RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12639
(134 letters)
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 44.6 bits (106), Expect = 3e-08
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 43 YECCHCARSFPCKSYLIPHLR-VHTGEKPYACNL 75
Y C C + F +L H++ VHT E+P+ C +
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39
Score = 28.4 bits (64), Expect = 0.041
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 66 TGEKPYACNLCTVRYLRSYELVLHLKKCH 94
+ KPY C C + R L H+K+ H
Sbjct: 1 SVGKPYICQSCGKGFSRPDHLNGHIKQVH 29
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 41.6 bits (98), Expect = 4e-07
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 43 YECCH--CARSFPCKSYLIPHLRVHTGEKPYAC 73
+ C C +SF K +L H+++H+ + Y C
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 34
Score = 23.1 bits (50), Expect = 2.9
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 3 SHLMLHTGAKPYAC 16
H+ LH+ + Y C
Sbjct: 21 EHMKLHSDTRDYIC 34
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 42.4 bits (99), Expect = 4e-07
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 12 KPYACTECDQKFNRNSKLKIHYNLAHCTGEMYECCHCARSFPCKSYLIPHLRVH 65
K Y C +C + F S+ H + H Y C C + F K +L+ H+++H
Sbjct: 2 KLYPC-QCGKSFTHKSQRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 33.9 bits (77), Expect = 6e-04
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 46 CHCARSFPCKSYLIPHLRVHTGEKPYACNLCTVRYLRSYELVLHLK 91
C C +SF KS H+ +H G +PY C +C ++ + LV H+K
Sbjct: 6 CQCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK 51
Score = 25.4 bits (55), Expect = 0.81
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 4 HLMLHTGAKPYACTECDQKFNRNSKLKIH 32
H+ +H G +PY C C +KF L H
Sbjct: 21 HMSMHLGLRPYGCGVCGKKFKMKHHLVGH 49
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 40.7 bits (96), Expect = 9e-07
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 63 RVHTGEKPYACNLCTVRYLRSYELVLHLKKCHRED 97
R H+GEKPY C +C R+ +S + +H+ + H E+
Sbjct: 1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTEN 35
Score = 40.0 bits (94), Expect = 2e-06
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 8 HTGAKPYACTECDQKFNRNSKLKIHYNLAHCTGEM 42
H+G KPY C C +F ++ +K+H H T +
Sbjct: 3 HSGEKPYECYICHARFTQSGTMKMHILQKH-TENV 36
Score = 31.5 bits (72), Expect = 0.003
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPH-LRVHTGE 68
+GE YEC C F + H L+ HT
Sbjct: 4 SGEKPYECYICHARFTQSGTMKMHILQKHTEN 35
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 40.3 bits (95), Expect = 1e-06
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEK 69
+ C C R+F + +L H R HT EK
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 22.6 bits (49), Expect = 3.9
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 69 KPYACNLCTVRYLRSYELVLHLK 91
+ + C +CT + R L H +
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYR 23
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 39.9 bits (94), Expect = 2e-06
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPHLRVHTGE 68
+GE Y C C ++F S L+ H RVHTGE
Sbjct: 3 SGEKPYGCVECGKAFSRSSILVQHQRVHTGE 33
Score = 38.8 bits (91), Expect = 4e-06
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 8 HTGAKPYACTECDQKFNRNSKLKIH 32
H+G KPY C EC + F+R+S L H
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQH 26
Score = 34.1 bits (79), Expect = 2e-04
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 64 VHTGEKPYACNLCTVRYLRSYELVLHLK 91
+H+GEKPY C C + RS LV H +
Sbjct: 1 IHSGEKPYGCVECGKAFSRSSILVQHQR 28
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 39.2 bits (92), Expect = 3e-06
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEK 69
+ C C + F +L H++ H +K
Sbjct: 3 FACPECPKRFMRSDHLSKHIKTHQNKK 29
Score = 31.2 bits (71), Expect = 0.004
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 12 KPYACTECDQKFNRNSKLKIH 32
K +AC EC ++F R+ L H
Sbjct: 1 KKFACPECPKRFMRSDHLSKH 21
Score = 23.5 bits (51), Expect = 2.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 69 KPYACNLCTVRYLRSYELVLHLK 91
K +AC C R++RS L H+K
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIK 23
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 38.5 bits (90), Expect = 7e-06
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 63 RVHTGEKPYACNLCTVRYLRSYELVLHLKKCHRED 97
R HTGEKPYAC+ C + + L +H K+ H +
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN 35
Score = 37.3 bits (87), Expect = 2e-05
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 8 HTGAKPYACTECDQKFNRNSKLKIH 32
HTG KPYAC+ CD+ F + L +H
Sbjct: 3 HTGEKPYACSHCDKTFRQKQLLDMH 27
Score = 35.4 bits (82), Expect = 8e-05
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPHLRVHTGEK 69
TGE Y C HC ++F K L H + +
Sbjct: 4 TGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN 35
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 37.4 bits (87), Expect = 2e-05
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLHLKK 92
R TG KP+ C C + RS L LH K+
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR 33
Score = 36.2 bits (84), Expect = 5e-05
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 4 HLMLHTGAKPYACTECDQKFNRNSKLKIH 32
TG KP+ C +CD+ F+R+ L +H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALH 30
Score = 31.2 bits (71), Expect = 0.003
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPHLRVHTG 67
TG ++C C RSF +L H + H
Sbjct: 7 TGIKPFQCPDCDRSFSRSDHLALHRKRHML 36
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
9606]}
Length = 38
Score = 36.7 bits (85), Expect = 3e-05
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 4 HLMLHTGAKPYACTECDQKFNRNSKLKIH 32
+ Y C EC + F+ +S L H
Sbjct: 3 SEWQQRERRRYKCDECGKSFSHSSDLSKH 31
Score = 36.7 bits (85), Expect = 4e-05
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 61 HLRVHTGEKPYACNLCTVRYLRSYELVLHLK 91
+ Y C+ C + S +L H +
Sbjct: 3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRR 33
Score = 35.9 bits (83), Expect = 7e-05
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 39 TGEM-YECCHCARSFPCKSYLIPHLRVHTGE 68
Y+C C +SF S L H R HTGE
Sbjct: 8 RERRRYKCDECGKSFSHSSDLSKHRRTHTGE 38
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 36.4 bits (85), Expect = 4e-05
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTG 67
++C C R+F +L H+R HTG
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTG 28
Score = 31.8 bits (73), Expect = 0.002
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 12 KPYACTECDQKFNRNSKLKIH 32
KP+ C C + F+R+ L H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTH 22
Score = 24.5 bits (54), Expect = 0.88
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 68 EKPYACNLCTVRYLRSYELVLHLK 91
+KP+ C +C + RS L H++
Sbjct: 1 QKPFQCRICMRNFSRSDHLTTHIR 24
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 35.8 bits (83), Expect = 7e-05
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 43 YECCH--CARSFPCKSYLIPHLRVHTGEK 69
+ C C + F L H R HTGEK
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 34.1 bits (79), Expect = 3e-04
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHT 66
Y+C C ++F S LI H R+HT
Sbjct: 3 YKCLECGKAFSQNSGLINHQRIHT 26
Score = 30.3 bits (69), Expect = 0.006
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 12 KPYACTECDQKFNRNSKLKIH 32
KPY C EC + F++NS L H
Sbjct: 1 KPYKCLECGKAFSQNSGLINH 21
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 30
Score = 33.8 bits (78), Expect = 4e-04
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 43 YECCH--CARSFPCKSYLIPHLRVHTGE 68
++C C +S+ L HLR HTGE
Sbjct: 3 HKCTFEGCRKSYSRLENLKTHLRSHTGE 30
Score = 26.9 bits (60), Expect = 0.10
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 12 KPYACTE--CDQKFNRNSKLKIH 32
KP+ CT C + ++R LK H
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTH 23
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 33.8 bits (77), Expect = 4e-04
Identities = 4/34 (11%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 39 TGE---MYECCHCARSFPCKSYLIPHLRVHTGEK 69
+ C ++F + + H++ H ++
Sbjct: 14 MPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 24.1 bits (52), Expect = 1.5
Identities = 3/19 (15%), Positives = 5/19 (26%)
Query: 58 LIPHLRVHTGEKPYACNLC 76
I +K + C
Sbjct: 6 SIDKYVKEMPDKTFECLFP 24
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 35
Score = 33.2 bits (76), Expect = 6e-04
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 8 HTGAKPYACTECDQKFNRNSKLKIH 32
+G +P+ C C F + H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARH 26
Score = 33.2 bits (76), Expect = 7e-04
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 39 TGE-MYECCHCARSFPCKSYLIPHLRVHTGE 68
+G+ + C C +F K+ HL+VHT
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVHTDT 33
Score = 30.9 bits (70), Expect = 0.004
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 65 HTGEKPYACNLCTVRYLRSYELVLHLK 91
+G++P+ C +C + HLK
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLK 28
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 31.5 bits (72), Expect = 0.002
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 43 YEC--CHCARSFPCKSYLIPHLRVHTG 67
Y C C R F + L H+R+HTG
Sbjct: 3 YACPVESCDRRFSRSADLTRHIRIHTG 29
Score = 27.3 bits (61), Expect = 0.076
Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Query: 12 KPYACTE--CDQKFNRNSKLKIHY 33
+PYAC CD++F+R++ L H
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHI 24
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 30.8 bits (70), Expect = 0.004
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 43 YEC--CHCARSFPCKSYLIPHLRVHTGE 68
++C C + F L H+R+HTG+
Sbjct: 3 FQCTFEGCGKRFSLDFNLRTHVRIHTGD 30
Score = 25.4 bits (56), Expect = 0.37
Identities = 8/23 (34%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 12 KPYACTE--CDQKFNRNSKLKIH 32
KP+ CT C ++F+ + L+ H
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTH 23
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 28.4 bits (64), Expect = 0.036
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 43 YECCH--CARSFPCKSYLIPHLRVHTGE 68
Y C H C ++F LI H + H +
Sbjct: 4 YSCDHPGCDKAFVRNHDLIRHKKSHQEK 31
Score = 28.1 bits (63), Expect = 0.041
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 12 KPYACTE--CDQKFNRNSKLKIHY 33
+PY+C CD+ F RN L H
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHK 25
Score = 22.3 bits (48), Expect = 6.7
Identities = 8/26 (30%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 68 EKPYACN--LCTVRYLRSYELVLHLK 91
++PY+C+ C ++R+++L+ H K
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKK 26
>d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 75
Score = 28.3 bits (63), Expect = 0.10
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEKPYACNLCTVR 79
Y C+ CKS L P+ + ++C +C R
Sbjct: 7 YNPVVCSGPH-CKSILNPYCVIDPRNSSWSCPICNSR 42
>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 44
Score = 27.0 bits (59), Expect = 0.17
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 66 TGEKPYACNLCTVRYLRSYELVLHLKKCHR 95
TG KPY CN+C R++ H+ C +
Sbjct: 1 TGIKPYECNICAKRFMWRDSFHRHVTSCTK 30
Score = 23.9 bits (51), Expect = 2.0
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 9 TGAKPYACTECDQKFN-RNSKLKIHYNLAHCT 39
TG KPY C C ++F R+S H ++ CT
Sbjct: 1 TGIKPYECNICAKRFMWRDS---FHRHVTSCT 29
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 26.2 bits (58), Expect = 0.25
Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 12 KPYACTE--CDQKFNRNSKLKIHY 33
+PY C C++KF +++ LK H
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHI 24
Score = 23.5 bits (51), Expect = 2.3
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 2/26 (7%)
Query: 43 YECCH--CARSFPCKSYLIPHLRVHT 66
Y C C + F + L H+ H
Sbjct: 3 YVCPFDGCNKKFAQSTNLKSHILTHA 28
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 25.9 bits (57), Expect = 0.26
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 68 EKPYACNLCTVRYLRSYELVLHLK 91
EKP+AC++C ++ RS E H K
Sbjct: 1 EKPFACDICGRKFARSDERKRHTK 24
Score = 24.4 bits (53), Expect = 0.92
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 12 KPYACTECDQKFNRNSKLKIH 32
KP+AC C +KF R+ + K H
Sbjct: 2 KPFACDICGRKFARSDERKRH 22
>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 25.5 bits (56), Expect = 0.42
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 44 ECCHCARSFPCKSYLIPHLRVHTGE 68
C R F + L+ H+R HTGE
Sbjct: 9 GCSRELRPFKAQYMLVVHMRRHTGE 33
>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 27
Score = 25.4 bits (55), Expect = 0.46
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 44 ECCHCARSFPCKSYLIPHLRVHTGEK 69
EC C + F K YL H R HTGEK
Sbjct: 2 ECPTCHKKFLSKYYLKVHNRKHTGEK 27
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 25.4 bits (55), Expect = 0.48
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 68 EKPYACNLCTVRYLRSYELVLHLKK 92
E+P+ C +C S +L +HL+
Sbjct: 1 ERPFKCQICPYASRNSSQLTVHLRS 25
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 37
Score = 25.1 bits (55), Expect = 0.68
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 42 MYECCHCARSFPCKSYLIPHLRVHTGEK 69
Y C C R F L H+ VH ++
Sbjct: 5 SYTCSFCKREFRSAQALGGHMNVHRRDR 32
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 24.2 bits (52), Expect = 1.1
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 12 KPYACTECDQKFNRNSKLKIH 32
KPY+C C +F R ++ H
Sbjct: 2 KPYSCPVCGLRFKRKDRMSYH 22
Score = 23.5 bits (50), Expect = 2.7
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 68 EKPYACNLCTVRYLRSYELVLHLK 91
EKPY+C +C +R+ R + H++
Sbjct: 1 EKPYSCPVCGLRFKRKDRMSYHVR 24
>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 23.8 bits (51), Expect = 1.8
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 69 KPYACNLCTVRYLRSYELVLHLKKCHRE 96
+P+ CN C+ + L H+KK H +
Sbjct: 1 RPFKCNYCSFDTKQPSNLSKHMKKFHGD 28
>d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 85
Score = 24.8 bits (54), Expect = 1.9
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 54 CKSYLIPHLRVHTGEKPYACNLCTVR 79
C+SY+ P + + + CN C +
Sbjct: 19 CRSYMNPFVTFIEQGRRWRCNFCRLA 44
>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId:
8355]}
Length = 26
Score = 23.5 bits (50), Expect = 2.1
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 43 YECCHCARSFPCKSYLIPHLRVH 65
Y+C C RSF KS L H RVH
Sbjct: 1 YKCGLCERSFVEKSALSRHQRVH 23
>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 28
Score = 22.9 bits (49), Expect = 3.8
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 43 YECCHCARSFPCKSYLIPHLRVHTGEK 69
Y C C S L H+R HT +
Sbjct: 2 YICEECGIRAKKPSMLKKHIRTHTDVR 28
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 22.7 bits (48), Expect = 4.0
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 13 PYACTECDQKFNRNSKLKIH 32
P+ C C + F+R KLK H
Sbjct: 1 PHKCEVCGKCFSRKDKLKTH 20
>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 23.9 bits (51), Expect = 4.1
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 40 GEMYECCHCARSFPCKSYLIPHLRVHTGE 68
Y+C HC + L HL +H E
Sbjct: 16 NSTYQCKHCDSKLQSTAELTSHLNIHNEE 44
Score = 22.7 bits (48), Expect = 8.3
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 14 YACTECDQKFNRNSKLKIHYN 34
Y C CD K ++L H N
Sbjct: 19 YQCKHCDSKLQSTAELTSHLN 39
>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 179
Score = 24.6 bits (53), Expect = 4.5
Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 26 NSKLKIHYNLAHCTGEMYECCHCAR-SFPCKSYLIPHLRVHTGEKP 70
++++ +H L TG + A K + TG+
Sbjct: 103 HARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPI 148
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 22.7 bits (48), Expect = 4.9
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 14 YACTECDQKFNRNSKLKIHYNLAHCTGE 41
+ C EC + F +SKLK H L H TGE
Sbjct: 3 HVCAECGKAFVESSKLKRHQ-LVH-TGE 28
Score = 22.3 bits (47), Expect = 5.2
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 45 CCHCARSFPCKSYLIPHLRVHTGE 68
C C ++F S L H VHTGE
Sbjct: 5 CAECGKAFVESSKLKRHQLVHTGE 28
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 22.7 bits (48), Expect = 5.4
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 45 CCHCARSFPCKSYLIPHLRVHTGEKPYA 72
C C + F +L H H+GEKPY+
Sbjct: 8 CEICGKIFRDVYHLNRHKLSHSGEKPYS 35
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 22.0 bits (46), Expect = 7.1
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 12 KPYACTECDQKFNRNSKLKIHYNLAH 37
K Y C C+ + +S LK H H
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKH 26
>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 26
Score = 22.1 bits (46), Expect = 7.7
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 13 PYACTECDQKFNRNSKLKIH 32
PY C+ C Q+F + L+ H
Sbjct: 2 PYKCSSCSQQFMQKKDLQSH 21
>d2okua1 a.48.5.1 (A:443-564) Uncharacterized protein PG0775
{Porphyromonas gingivalis [TaxId: 837]}
Length = 122
Score = 23.3 bits (50), Expect = 8.0
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 113 AQVKQEYEELPVKVELNE 130
A++++EY++ VK EL
Sbjct: 16 ARIREEYQQTEVKPELQP 33
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.136 0.444
Gapped
Lambda K H
0.267 0.0612 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 520,748
Number of extensions: 23938
Number of successful extensions: 232
Number of sequences better than 10.0: 1
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 129
Length of query: 134
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 58
Effective length of database: 1,364,116
Effective search space: 79118728
Effective search space used: 79118728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 48 (22.5 bits)