BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1264
(209 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WRM|A Chain A, Crystal Structure Of Jsp-1
Length = 165
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 86/133 (64%), Gaps = 9/133 (6%)
Query: 19 VLPGLYVGNYRDSKDAVQLDRFNITHIVAIHDSARKIH--------PVSKTKASQPANHY 70
+LPGLY+GN++D++DA QL + +THI+++HDSAR + P + + + H+
Sbjct: 10 ILPGLYIGNFKDARDAEQLSKNKVTHILSVHDSARPMLEGVKYLCIPAADSPSQNLTRHF 69
Query: 71 QVDPRGGPDQVYLSEQNISHFSLAGMSRSVTVTIAYIMSVTSLNWKEALKVVRVGRAIAN 130
+ + + E + H LAG+SRSVT+ IAYIM+VT W++AL VR GR+ AN
Sbjct: 70 KESIKFIHECRLRGESCLVH-CLAGVSRSVTLVIAYIMTVTDFGWEDALHTVRAGRSCAN 128
Query: 131 PNNGFQKQLQDFE 143
PN GFQ+QLQ+FE
Sbjct: 129 PNVGFQRQLQEFE 141
>pdb|1YZ4|A Chain A, Crystal Structure Of Dusp15
pdb|1YZ4|B Chain B, Crystal Structure Of Dusp15
Length = 160
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 79/132 (59%), Gaps = 9/132 (6%)
Query: 19 VLPGLYVGNYRDSKDAVQLDRFNITHIVAIHDSARKIH--------PVSKTKASQPANHY 70
VLPGLY+GN+ D+KD QL R ITHI++IH+S + + PV+ T H+
Sbjct: 11 VLPGLYLGNFIDAKDLDQLGRNKITHIISIHESPQPLLQDITYLRIPVADTPEVPIKKHF 70
Query: 71 QVDPRGGPDQVYLSEQNISHFSLAGMSRSVTVTIAYIMSVTSLNWKEALKVVRVGRAIAN 130
+ + L+ N S AG+SRS T+ AY+M+VT L W++ L+ ++ R IAN
Sbjct: 71 K-ECINFIHCCRLNGGNCLVHSFAGISRSTTIVTAYVMTVTGLGWRDVLEAIKATRPIAN 129
Query: 131 PNNGFQKQLQDF 142
PN GF++QL++F
Sbjct: 130 PNPGFRQQLEEF 141
>pdb|1MKP|A Chain A, Crystal Structure Of Pyst1 (Mkp3)
Length = 144
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 10/135 (7%)
Query: 19 VLPGLYVGNYRDSKDAVQLDRFNITHIVAIHDSARKIHPVS---KTKASQPANHY-QVDP 74
+LP LY+G +DS + L+ F I +I+ + + + + K K ++H+ Q
Sbjct: 7 ILPFLYLGCAKDSTNLDVLEEFGIKYILNVTPNLPNLFENAGEFKYKQIPISDHWSQNLS 66
Query: 75 RGGPDQVYLSEQ------NISHFSLAGMSRSVTVTIAYIMSVTSLNWKEALKVVRVGRAI 128
+ P+ + ++ + SLAG+SRSVTVT+AY+M +L+ +A +V++ ++
Sbjct: 67 QFFPEAISFIDEARGKNCGVLVHSLAGISRSVTVTVAYLMQKLNLSMNDAYDIVKMKKSN 126
Query: 129 ANPNNGFQKQLQDFE 143
+PN F QL DFE
Sbjct: 127 ISPNFNFMGQLLDFE 141
>pdb|2HXP|A Chain A, Crystal Structure Of The Human Phosphatase (Dusp9)
Length = 155
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 70/135 (51%), Gaps = 10/135 (7%)
Query: 19 VLPGLYVGNYRDSKDAVQLDRFNITHIVAIHDSARKIHPVS---KTKASQPANHY-QVDP 74
+LP LY+G+ RDS + L + I +I+ + + + K ++H+ Q
Sbjct: 9 ILPNLYLGSARDSANLESLAKLGIRYILNVTPNLPNFFEKNGDFHYKQIPISDHWSQNLS 68
Query: 75 RGGPDQVYLSEQNISH------FSLAGMSRSVTVTIAYIMSVTSLNWKEALKVVRVGRAI 128
R P+ + ++ +S SLAG+SRSVTVT+AY+M L+ +A +V+ ++
Sbjct: 69 RFFPEAIEFIDEALSQNCGVLVHSLAGVSRSVTVTVAYLMQKLHLSLNDAYDLVKRKKSN 128
Query: 129 ANPNNGFQKQLQDFE 143
+PN F QL DFE
Sbjct: 129 ISPNFNFMGQLLDFE 143
>pdb|3LJ8|A Chain A, Crystal Structure Of Mkp-4
Length = 146
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 69/135 (51%), Gaps = 10/135 (7%)
Query: 19 VLPGLYVGNYRDSKDAVQLDRFNITHIVAIHDSARKIHPVS---KTKASQPANHY-QVDP 74
+LP LY+G+ RDS + L + I +I+ + + + K ++H+ Q
Sbjct: 6 ILPNLYLGSARDSANLESLAKLGIRYILNVTPNLPNFFEKNGDFHYKQIPISDHWSQNLS 65
Query: 75 RGGPDQVYLSEQNISH------FSLAGMSRSVTVTIAYIMSVTSLNWKEALKVVRVGRAI 128
R P+ + ++ +S LAG+SRSVTVT+AY+M L+ +A +V+ ++
Sbjct: 66 RFFPEAIEFIDEALSQNCGVLVHCLAGVSRSVTVTVAYLMQKLHLSLNDAYDLVKRKKSN 125
Query: 129 ANPNNGFQKQLQDFE 143
+PN F QL DFE
Sbjct: 126 ISPNFNFMGQLLDFE 140
>pdb|1ZZW|A Chain A, Crystal Structure Of Catalytic Domain Of Human Map Kinase
Phosphatase 5
pdb|1ZZW|B Chain B, Crystal Structure Of Catalytic Domain Of Human Map Kinase
Phosphatase 5
Length = 149
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 12/136 (8%)
Query: 19 VLPGLYVGNYRDSKDAVQLDRFNITHIVAIHDSARKIH-----------PVSKTKASQPA 67
+LP L++GN +D++D + R NI +++ + H P + + Q
Sbjct: 7 ILPFLFLGNEQDAQDLDTMQRLNIGYVINVTTHLPLYHYEKGLFNYKRLPATDSN-KQNL 65
Query: 68 NHYQVDPRGGPDQVYLSEQNISHFSLAGMSRSVTVTIAYIMSVTSLNWKEALKVVRVGRA 127
Y + ++ + + + AG+SRS T+ IAY+M T + +A K V+ R
Sbjct: 66 RQYFEEAFEFIEEAHQCGKGLLIHCQAGVSRSATIVIAYLMKHTRMTMTDAYKFVKGKRP 125
Query: 128 IANPNNGFQKQLQDFE 143
I +PN F QL +FE
Sbjct: 126 IISPNLNFMGQLLEFE 141
>pdb|2OUD|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mkp5
Length = 177
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 12/136 (8%)
Query: 19 VLPGLYVGNYRDSKDAVQLDRFNITHIVAIHDSARKIH-----------PVSKTKASQPA 67
+LP L++GN +D++D + R NI +++ + H P + + Q
Sbjct: 11 ILPFLFLGNEQDAQDLDTMQRLNIGYVINVTTHLPLYHYEKGLFNYKRLPATDSN-KQNL 69
Query: 68 NHYQVDPRGGPDQVYLSEQNISHFSLAGMSRSVTVTIAYIMSVTSLNWKEALKVVRVGRA 127
Y + ++ + + + AG+SRS T+ IAY+M T + +A K V+ R
Sbjct: 70 RQYFEEAFEFIEEAHQCGKGLLIHCQAGVSRSATIVIAYLMKHTRMTMTDAYKFVKGKRP 129
Query: 128 IANPNNGFQKQLQDFE 143
I +PN F QL +FE
Sbjct: 130 IISPNLNFMGQLLEFE 145
>pdb|2R0B|A Chain A, Crystal Structure Of Human Tyrosine Phosphatase-like
Serine/threonine/tyrosine-interacting Protein
Length = 154
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 61/149 (40%), Gaps = 31/149 (20%)
Query: 19 VLPGLYVGNYRD---SKDAVQLDRFNITHIVAIHDSARKIHPVSKTKASQPANHYQVDPR 75
+LPGL++G Y SK V L + ITHI+ I + K Q + +D
Sbjct: 9 ILPGLFLGPYSSAMKSKLPV-LQKHGITHIICIRQNIEA--NFIKPNFQQLFRYLVLDIA 65
Query: 76 GGPDQVYLSEQNISHFSL--------------------AGMSRSVTVTIAYIMSVTSLNW 115
P E I F + AG+SRS IAYIM + +
Sbjct: 66 DNP-----VENIIRFFPMTKEFIDGSLQMGGKVLVHGNAGISRSAAFVIAYIMETFGMKY 120
Query: 116 KEALKVVRVGRAIANPNNGFQKQLQDFEC 144
++A V+ R NPN GF QLQ++E
Sbjct: 121 RDAFAYVQERRFCINPNAGFVHQLQEYEA 149
>pdb|2G6Z|A Chain A, Crystal Structure Of Human Dusp5
pdb|2G6Z|B Chain B, Crystal Structure Of Human Dusp5
pdb|2G6Z|C Chain C, Crystal Structure Of Human Dusp5
Length = 211
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 32/145 (22%)
Query: 19 VLPGLYVGNYRDSKDAVQLDRFNITHIVAIHDSARK--------IH----PVSKTKASQP 66
+LP LY+G+ + A + + HI A+ + +R+ +H PV + +
Sbjct: 9 ILPFLYLGS---AYHASKCEFLANLHITALLNVSRRTSEACMTHLHYKWIPVEDSHTADI 65
Query: 67 ANHYQ--------VDPRGGPDQVYLSEQNISHFSLAGMSRSVTVTIAYIMSVTSLNWKEA 118
++H+Q V +GG V+ S AG+SRS T+ +AY+M KEA
Sbjct: 66 SSHFQEAIDFIDCVREKGGKVLVH---------SEAGISRSPTICMAYLMKTKQFRLKEA 116
Query: 119 LKVVRVGRAIANPNNGFQKQLQDFE 143
++ R++ +PN GF QL +E
Sbjct: 117 FDYIKQRRSMVSPNFGFMGQLLQYE 141
>pdb|1M3G|A Chain A, Solution Structure Of The Catalytic Domain Of Mapk
Phosphatase Pac-1: Insights Into Substrate-Induced
Enzymatic Activation
Length = 145
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 10/134 (7%)
Query: 19 VLPGLYVGNYRDSKDAVQLDRFNITHIVAIHDSA---------RKIHPVSKTKASQPANH 69
+LP L++G+ S D L IT ++ + S K PV + + +
Sbjct: 7 ILPYLFLGSCSHSSDLQGLQACGITAVLNVSASCPNHFEGLFRYKSIPVEDNQMVEISAW 66
Query: 70 YQVDPRGGPDQVYLSEQNISHFSLAGMSRSVTVTIAYIMSVTSLNWKEALKVVRVGRAIA 129
+Q + G D V S + S AG+SRS T+ +AY+M + EA V+ R +
Sbjct: 67 FQ-EAIGFIDWVKNSGGRVLVHSQAGISRSATICLAYLMQSRRVRLDEAFDFVKQRRGVI 125
Query: 130 NPNNGFQKQLQDFE 143
+PN F QL FE
Sbjct: 126 SPNFSFMGQLLQFE 139
>pdb|1J4X|A Chain A, Human Vh1-Related Dual-Specificity Phosphatase C124s
Mutant- Peptide Complex
Length = 184
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 21/140 (15%)
Query: 19 VLPGLYVGNYRDSKDAVQLDRFNITHIVAIHDSARKIHPVS---------------KTKA 63
V P +YVGN ++D +L + ITH++ + +H + K
Sbjct: 32 VTPRIYVGNASVAQDIPKLQKLGITHVLNAAEGRSFMHVNTNANFYKDSGITYLGIKAND 91
Query: 64 SQPANHYQVDPRGGP--DQVYLSEQN--ISHFSLAGMSRSVTVTIAYIMSVTSLNWKEAL 119
+Q N R DQ L+++N + S G SRS T+ IAY+M ++ K AL
Sbjct: 92 TQEFNLSAYFERAADFIDQA-LAQKNGRVLVHSREGYSRSPTLVIAYLMMRQKMDVKSAL 150
Query: 120 KVVRVGRAIANPNNGFQKQL 139
+VR R I PN+GF QL
Sbjct: 151 SIVRQNREIG-PNDGFLAQL 169
>pdb|4HRF|A Chain A, Atomic Structure Of Dusp26
pdb|4HRF|B Chain B, Atomic Structure Of Dusp26
pdb|4HRF|C Chain C, Atomic Structure Of Dusp26
pdb|4HRF|D Chain D, Atomic Structure Of Dusp26
Length = 160
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 63/135 (46%), Gaps = 15/135 (11%)
Query: 19 VLPGLYVGNYRDSKDAVQLDRFNITHIV-AIHDSARK---------IHPVSKTKASQPAN 68
V PGLY+G+ + + +L R ITH++ A H R I + PA
Sbjct: 6 VWPGLYLGDQDMANNRRELRRLGITHVLNASHSRWRGTPEAYEGLGIRYLGVEAHDSPAF 65
Query: 69 HYQVDPRGGPDQVY--LSEQN--ISHFSLAGMSRSVTVTIAYIMSVTSLNWKEALKVVRV 124
+ + D ++ LS+ I S G+SRS T+ +AY+M L EA+K V+
Sbjct: 66 DMSIHFQTAADFIHRALSQPGGKILVHSAVGVSRSATLVLAYLMLYHHLTLVEAIKKVKD 125
Query: 125 GRAIANPNNGFQKQL 139
R I PN GF +QL
Sbjct: 126 HRGII-PNRGFLRQL 139
>pdb|1VHR|A Chain A, Human Vh1-Related Dual-Specificity Phosphatase
pdb|1VHR|B Chain B, Human Vh1-Related Dual-Specificity Phosphatase
Length = 184
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 62/148 (41%), Gaps = 37/148 (25%)
Query: 19 VLPGLYVGNYRDSKDAVQLDRFNITHIVAIHDSARKIHPVSKTKASQPANHYQVDPRGGP 78
V P +YVGN ++D +L + ITH++ + +H + AN Y+ G
Sbjct: 32 VTPRIYVGNASVAQDIPKLQKLGITHVLNAAEGRSFMH------VNTNANFYK---DSGI 82
Query: 79 DQVYLSEQNISHFSLA---------------------------GMSRSVTVTIAYIMSVT 111
+ + + F+L+ G SRS T+ IAY+M
Sbjct: 83 TYLGIKANDTQEFNLSAYFERAADFIDQALAQKNGRVLVHCREGYSRSPTLVIAYLMMRQ 142
Query: 112 SLNWKEALKVVRVGRAIANPNNGFQKQL 139
++ K AL +VR R I PN+GF QL
Sbjct: 143 KMDVKSALSIVRQNREIG-PNDGFLAQL 169
>pdb|3F81|A Chain A, Interaction Of Vhr With Sa3
pdb|3F81|B Chain B, Interaction Of Vhr With Sa3
Length = 183
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 62/148 (41%), Gaps = 37/148 (25%)
Query: 19 VLPGLYVGNYRDSKDAVQLDRFNITHIVAIHDSARKIHPVSKTKASQPANHYQVDPRGGP 78
V P +YVGN ++D +L + ITH++ + +H + AN Y+ G
Sbjct: 31 VTPRIYVGNASVAQDIPKLQKLGITHVLNAAEGRSFMH------VNTNANFYK---DSGI 81
Query: 79 DQVYLSEQNISHFSLA---------------------------GMSRSVTVTIAYIMSVT 111
+ + + F+L+ G SRS T+ IAY+M
Sbjct: 82 TYLGIKANDTQEFNLSAYFERAADFIDQALAQKNGRVLVHCREGYSRSPTLVIAYLMMRQ 141
Query: 112 SLNWKEALKVVRVGRAIANPNNGFQKQL 139
++ K AL +VR R I PN+GF QL
Sbjct: 142 KMDVKSALSIVRQNREIG-PNDGFLAQL 168
>pdb|2E0T|A Chain A, Crystal Structure Of Catalytic Domain Of Dual Specificity
Phosphatase 26, Ms0830 From Homo Sapiens
Length = 151
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 17/136 (12%)
Query: 19 VLPGLYVGNYRDSKDAVQLDRFNITHIV-AIHDSARK---------IHPVSKTKASQPAN 68
V PGLY+G+ + + +L R ITH++ A H R I + PA
Sbjct: 5 VWPGLYLGDQDMANNRRELRRLGITHVLNASHSRWRGTPEAYEGLGIRYLGVEAHDSPAF 64
Query: 69 HYQVDPRGGPDQVY--LSEQN---ISHFSLAGMSRSVTVTIAYIMSVTSLNWKEALKVVR 123
+ + D ++ LS+ + H ++ G+SRS T+ +AY+M L EA+K V+
Sbjct: 65 DMSIHFQTAADFIHRALSQPGGKILVHCAV-GVSRSATLVLAYLMLYHHLTLVEAIKKVK 123
Query: 124 VGRAIANPNNGFQKQL 139
R I PN GF +QL
Sbjct: 124 DHRGII-PNRGFLRQL 138
>pdb|3EZZ|A Chain A, Crystal Structure Of Human Mkp-2
pdb|3EZZ|B Chain B, Crystal Structure Of Human Mkp-2
pdb|3EZZ|C Chain C, Crystal Structure Of Human Mkp-2
pdb|3EZZ|D Chain D, Crystal Structure Of Human Mkp-2
pdb|3EZZ|E Chain E, Crystal Structure Of Human Mkp-2
pdb|3EZZ|F Chain F, Crystal Structure Of Human Mkp-2
Length = 144
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 10/134 (7%)
Query: 19 VLPGLYVGNYRDSKDAVQLDRFNITHIVAIHDSA---------RKIHPVSKTKASQPANH 69
+LP LY+G+ + LD IT ++ + K PV + ++
Sbjct: 7 ILPFLYLGSAYHAARRDMLDALGITALLNVSSDCPNHFEGHYQYKCIPVEDNHKADISSW 66
Query: 70 YQVDPRGGPDQVYLSEQNISHFSLAGMSRSVTVTIAYIMSVTSLNWKEALKVVRVGRAIA 129
+ ++ D V + S AG+SRS T+ +AY+M + +EA + V+ R+I
Sbjct: 67 F-MEAIEYIDAVKDCRGRVLVHSQAGISRSATICLAYLMMKKRVRLEEAFEFVKQRRSII 125
Query: 130 NPNNGFQKQLQDFE 143
+PN F QL FE
Sbjct: 126 SPNFSFMGQLLQFE 139
>pdb|2GWO|A Chain A, Crystal Structure Of Tmdp
pdb|2GWO|B Chain B, Crystal Structure Of Tmdp
pdb|2GWO|C Chain C, Crystal Structure Of Tmdp
pdb|2GWO|D Chain D, Crystal Structure Of Tmdp
Length = 198
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 17/138 (12%)
Query: 19 VLPGLYVGNYRDSKDAVQLDRFNITHIVAIHDSARKIHPVSKTKASQPANHYQVDPRGGP 78
V P L++G+ ++D +L + ITH+V ++ +K +Y ++ P
Sbjct: 49 VWPSLFLGDAYAARDKSKLIQLGITHVVNAAAGKFQVDTGAKFYRGMSLEYYGIEADDNP 108
Query: 79 ----DQVYLSEQNISHFSLA------------GMSRSVTVTIAYIMSVTSLNWKEALKVV 122
+L +L+ G+SRS T+ +A++M ++ EA++ V
Sbjct: 109 FFDLSVYFLPVARYIRAALSVPQGRVLVHCAMGVSRSATLVLAFLMICENMTLVEAIQTV 168
Query: 123 RVGRAIANPNNGFQKQLQ 140
+ R I PN+GF +QLQ
Sbjct: 169 QAHRNIC-PNSGFLRQLQ 185
>pdb|2WGP|A Chain A, Crystal Structure Of Human Dual Specificity Phosphatase 14
pdb|2WGP|B Chain B, Crystal Structure Of Human Dual Specificity Phosphatase 14
Length = 190
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 94 AGMSRSVTVTIAYIMSVTSLNWKEALKVVRVGRAIANPNNGFQKQLQDFE 143
AG+SRS T+ IAY+M ++ EA V+ R + PN GF +QL D+E
Sbjct: 112 AGVSRSATLCIAYLMKFHNVCLLEAYNWVKARRPVIRPNVGFWRQLIDYE 161
>pdb|2PQ5|A Chain A, Crystal Structure Of Dual Specificity Protein Phosphatase
13 (Dusp13)
pdb|2PQ5|B Chain B, Crystal Structure Of Dual Specificity Protein Phosphatase
13 (Dusp13)
pdb|2PQ5|C Chain C, Crystal Structure Of Dual Specificity Protein Phosphatase
13 (Dusp13)
pdb|2PQ5|D Chain D, Crystal Structure Of Dual Specificity Protein Phosphatase
13 (Dusp13)
Length = 205
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 17/138 (12%)
Query: 19 VLPGLYVGNYRDSKDAVQLDRFNITHIVAIHDSARKIHPVSKTKASQPANHYQVDPRGGP 78
V P L++G+ ++D +L + ITH+V ++ +K +Y ++ P
Sbjct: 49 VWPSLFLGDAYAARDKSKLIQLGITHVVNAAAGKFQVDTGAKFYRGMSLEYYGIEADDNP 108
Query: 79 ----DQVYLSEQNISHFSLA------------GMSRSVTVTIAYIMSVTSLNWKEALKVV 122
+L +L+ G+SRS T+ +A++M ++ EA++ V
Sbjct: 109 FFDLSVYFLPVARYIRAALSVPQGRVLVHCAMGVSRSATLVLAFLMIYENMTLVEAIQTV 168
Query: 123 RVGRAIANPNNGFQKQLQ 140
+ R I PN+GF +QLQ
Sbjct: 169 QAHRNIC-PNSGFLRQLQ 185
>pdb|2HCM|A Chain A, Crystal Structure Of Mouse Putative Dual Specificity
Phosphatase Complexed With Zinc Tungstate, New York
Structural Genomics Consortium
Length = 164
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%)
Query: 95 GMSRSVTVTIAYIMSVTSLNWKEALKVVRVGRAIANPNNGFQKQLQDFE 143
G SRS V AY+M + A ++V+ R +A PN GF QLQ +E
Sbjct: 99 GRSRSAAVCTAYLMRHRGHSLDRAFQMVKSARPVAEPNLGFWAQLQKYE 147
>pdb|2NT2|A Chain A, Crystal Structure Of Slingshot Phosphatase 2
pdb|2NT2|B Chain B, Crystal Structure Of Slingshot Phosphatase 2
pdb|2NT2|C Chain C, Crystal Structure Of Slingshot Phosphatase 2
Length = 145
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 92 SLAGMSRSVTVTIAYIMSVTSLNWKEALKVVRVGRAIANPNNGFQKQLQDFE 143
S G+SRS + IAY M N A V+ R + PN F +QL++++
Sbjct: 88 SKMGVSRSASTVIAYAMKEYGWNLDRAYDYVKERRTVTKPNPSFMRQLEEYQ 139
>pdb|2ESB|A Chain A, Crystal Structure Of Human Dusp18
Length = 188
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 94 AGMSRSVTVTIAYIMSVTSLNWKEALKVVRVGRAIANPNNGFQKQLQDFE 143
AG+SRS + +AY+M +++ +A + R I PN+GF +QL +E
Sbjct: 106 AGVSRSAALCLAYLMKYHAMSLLDAHTWTKSCRPIIRPNSGFWEQLIHYE 155
>pdb|3S4E|A Chain A, Crystal Structrue Of A Novel Mitogen-Activated Protein
Kinase Phosphatase, Skrp1
Length = 144
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 30/50 (60%)
Query: 94 AGMSRSVTVTIAYIMSVTSLNWKEALKVVRVGRAIANPNNGFQKQLQDFE 143
AG+SR+ + I ++M+ ++ A +V+ R PN+GF +QL+ ++
Sbjct: 90 AGVSRAAAIVIGFLMNSEQTSFTSAFSLVKNARPSICPNSGFMEQLRTYQ 139
>pdb|2Y96|A Chain A, Structure Of Human Dual-Specificity Phosphatase 27
pdb|2Y96|B Chain B, Structure Of Human Dual-Specificity Phosphatase 27
Length = 219
Score = 35.0 bits (79), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 95 GMSRSVTVTIAYIMSVTSLNWKEALKVVRVGRAIANPNNGFQKQLQDFE 143
G SRS T+ +AY+M + +A++ V R + PN GF KQL++ +
Sbjct: 149 GRSRSATLVLAYLMIHKDMTLVDAIQQVAKNRCVL-PNRGFLKQLRELD 196
>pdb|2J16|B Chain B, Apo & Sulphate Bound Forms Of Sdp-1
Length = 182
Score = 34.7 bits (78), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 95 GMSRSVTVTIAYIMSVTSLNWKEALKVVRVGRAIANPNNGFQKQLQDFE 143
G+SRS T+ IAYIM +L+ + + +++ NP+ G QL ++E
Sbjct: 127 GLSRSATLIIAYIMKYHNLSLRHSYDLLKSRADKINPSIGLIFQLMEWE 175
>pdb|2J17|A Chain A, Ptyr Bound Form Of Sdp-1
pdb|2J17|B Chain B, Ptyr Bound Form Of Sdp-1
Length = 182
Score = 34.7 bits (78), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 95 GMSRSVTVTIAYIMSVTSLNWKEALKVVRVGRAIANPNNGFQKQLQDFEC 144
G+SRS T+ IAYIM +L+ + + +++ NP+ G QL ++E
Sbjct: 127 GLSRSATLIIAYIMKYHNLSLRHSYDLLKSRADKINPSIGLIFQLMEWEV 176
>pdb|2J16|A Chain A, Apo & Sulphate Bound Forms Of Sdp-1
Length = 182
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 95 GMSRSVTVTIAYIMSVTSLNWKEALKVVRVGRAIANPNNGFQKQLQDFEC 144
G+SRS T+ IAYIM +L+ + + +++ NP+ G QL ++E
Sbjct: 127 GLSRSATLIIAYIMKYHNLSLRHSYDLLKSRADKINPSIGLIFQLMEWEV 176
>pdb|2RF6|A Chain A, Crystal Structure Of The Vaccinia Virus Dual-Specificity
Phosphatase Vh1
pdb|3CM3|A Chain A, High Resolution Crystal Structure Of The Vaccinia Virus
Dual-Specificity Phosphatase Vh1
Length = 176
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 31/110 (28%)
Query: 19 VLPGLYVGNYRDSKDA------------VQLDRF-------NITHIVAIHDSARKIHPVS 59
V +Y+GNY+++ DA + +D++ NI HI + D+ I S
Sbjct: 35 VTNNVYLGNYKNAMDAPSSEVKFKYVLNLTMDKYTLPNSNINIIHIPLVDDTTTDI---S 91
Query: 60 KTKASQPANHYQVDPRGGPDQVYLSEQNISHFSLAGMSRSVTVTIAYIMS 109
K A + D R P V+ S AG++RS + +AY+MS
Sbjct: 92 KYFDDVTAFLSKCDQRNEPVLVH---------SAAGVNRSGAMILAYLMS 132
>pdb|1GPL|A Chain A, Rp2 Lipase
Length = 432
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 22/52 (42%)
Query: 28 YRDSKDAVQLDRFNITHIVAIHDSARKIHPVSKTKASQPANHYQVDPRGGPD 79
++D+ + V+LD + + IH I P SQ H P GG D
Sbjct: 184 FQDTPEEVRLDPSDAKFVDVIHTDISPILPSLGFGMSQKVGHMDFFPNGGKD 235
>pdb|2OXE|A Chain A, Structure Of The Human Pancreatic Lipase-Related Protein 2
pdb|2OXE|B Chain B, Structure Of The Human Pancreatic Lipase-Related Protein 2
Length = 466
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 28 YRDSKDAVQLDRFNITHIVAIHDSARKIHPVSKTKASQPANHYQVDPRGG 77
++D + V+LD + + IH + I P SQ H P GG
Sbjct: 186 FQDEPEEVRLDPSDAVFVDVIHTDSSPIVPSLGFGMSQKVGHLDFFPNGG 235
>pdb|2PVS|A Chain A, Structure Of Human Pancreatic Lipase Related Protein 2
Mutant N336q
pdb|2PVS|B Chain B, Structure Of Human Pancreatic Lipase Related Protein 2
Mutant N336q
Length = 452
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 28 YRDSKDAVQLDRFNITHIVAIHDSARKIHPVSKTKASQPANHYQVDPRGG 77
++D + V+LD + + IH + I P SQ H P GG
Sbjct: 184 FQDEPEEVRLDPSDAVFVDVIHTDSSPIVPSLGFGMSQKVGHLDFFPNGG 233
>pdb|4F6T|B Chain B, The Crystal Structure Of The Molybdenum Storage Protein
(Mosto) From Azotobacter Vinelandii Loaded With Various
Polyoxometalates
Length = 268
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 22 GLYVGNYRDSKDAVQLDRFNITHIVA--IHDSARKIHPVSKTKASQPANHYQV 72
GLY N + SKDA + R ++ + A +HDS + + +++Q QV
Sbjct: 191 GLYTANPKTSKDATFIPRISVDEMKAKGLHDSILEFPVLDLLQSAQHVREVQV 243
>pdb|1W52|X Chain X, Crystal Structure Of A Proteolyzed Form Of Pancreatic
Lipase Related Protein 2 From Horse
Length = 452
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 22/50 (44%)
Query: 28 YRDSKDAVQLDRFNITHIVAIHDSARKIHPVSKTKASQPANHYQVDPRGG 77
++D+ + V+LD + + IH A + P SQ H P GG
Sbjct: 184 FQDASEEVRLDPSDAQFVDVIHTDASPMLPSLGFGMSQKVGHMDFFPNGG 233
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,509,012
Number of Sequences: 62578
Number of extensions: 186786
Number of successful extensions: 407
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 360
Number of HSP's gapped (non-prelim): 38
length of query: 209
length of database: 14,973,337
effective HSP length: 94
effective length of query: 115
effective length of database: 9,091,005
effective search space: 1045465575
effective search space used: 1045465575
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)