Query psy1264
Match_columns 209
No_of_seqs 223 out of 1343
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 15:46:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1264.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1264hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1718|consensus 100.0 8.3E-34 1.8E-38 219.1 12.3 129 13-149 14-158 (198)
2 smart00195 DSPc Dual specifici 100.0 1E-31 2.2E-36 205.6 14.2 121 16-144 1-137 (138)
3 KOG1716|consensus 100.0 1.1E-29 2.3E-34 216.9 12.8 133 13-150 72-220 (285)
4 KOG1717|consensus 100.0 1.3E-29 2.7E-34 208.6 10.9 129 14-148 170-314 (343)
5 cd00127 DSPc Dual specificity 100.0 4.5E-29 9.7E-34 190.4 13.2 123 15-143 1-139 (139)
6 PF00782 DSPc: Dual specificit 100.0 6.4E-29 1.4E-33 188.7 9.5 117 23-145 1-133 (133)
7 PRK12361 hypothetical protein; 99.9 3.3E-24 7.1E-29 197.8 14.2 127 15-145 94-236 (547)
8 KOG1719|consensus 99.9 9.2E-22 2E-26 150.4 9.3 136 5-148 20-172 (183)
9 PTZ00242 protein tyrosine phos 99.8 2.2E-20 4.7E-25 147.8 13.1 130 10-145 5-157 (166)
10 PTZ00393 protein tyrosine phos 99.8 3E-19 6.5E-24 147.1 11.6 107 33-146 108-229 (241)
11 KOG1720|consensus 99.6 1.4E-15 3E-20 122.0 10.9 106 35-144 88-206 (225)
12 COG2453 CDC14 Predicted protei 99.5 6.9E-14 1.5E-18 112.0 10.2 75 68-144 73-163 (180)
13 KOG2836|consensus 99.4 1.3E-12 2.9E-17 98.2 10.1 103 33-142 33-152 (173)
14 PF03162 Y_phosphatase2: Tyros 99.4 2.7E-13 5.9E-18 107.0 4.7 108 14-124 5-129 (164)
15 TIGR01244 conserved hypothetic 99.4 4.1E-12 8.8E-17 97.2 9.5 112 16-129 2-128 (135)
16 PF05706 CDKN3: Cyclin-depende 99.3 1.6E-12 3.4E-17 101.8 3.6 98 22-119 42-168 (168)
17 PF04273 DUF442: Putative phos 99.0 6.1E-10 1.3E-14 82.3 4.5 89 16-105 2-105 (110)
18 smart00012 PTPc_DSPc Protein t 99.0 2.5E-09 5.5E-14 76.7 7.3 56 85-140 39-100 (105)
19 smart00404 PTPc_motif Protein 99.0 2.5E-09 5.5E-14 76.7 7.3 56 85-140 39-100 (105)
20 COG5350 Predicted protein tyro 98.8 2.3E-08 5.1E-13 76.8 9.1 103 34-136 25-145 (172)
21 PLN02727 NAD kinase 98.8 1.5E-08 3.2E-13 96.9 6.6 96 22-117 262-373 (986)
22 cd00047 PTPc Protein tyrosine 98.7 2.8E-08 6.1E-13 82.0 6.8 56 85-140 166-226 (231)
23 smart00194 PTPc Protein tyrosi 98.6 7.7E-08 1.7E-12 80.8 6.8 56 85-140 193-253 (258)
24 PF13350 Y_phosphatase3: Tyros 98.6 1.4E-07 3.1E-12 74.2 6.7 98 18-120 15-158 (164)
25 COG3453 Uncharacterized protei 98.6 1.6E-07 3.5E-12 69.4 6.0 107 16-124 3-124 (130)
26 PRK15375 pathogenicity island 98.4 8.2E-07 1.8E-11 80.5 7.9 60 88-147 469-530 (535)
27 PF00102 Y_phosphatase: Protei 98.2 3E-06 6.5E-11 69.3 6.9 58 84-141 169-231 (235)
28 KOG1572|consensus 98.2 5.5E-06 1.2E-10 68.2 7.9 108 13-122 57-184 (249)
29 KOG2283|consensus 98.2 4.1E-06 8.9E-11 75.4 7.7 124 15-145 14-173 (434)
30 PHA02742 protein tyrosine phos 98.1 5.9E-06 1.3E-10 71.4 7.1 54 85-138 229-287 (303)
31 PHA02747 protein tyrosine phos 98.1 9.4E-06 2E-10 70.4 8.3 54 86-139 230-288 (312)
32 PHA02746 protein tyrosine phos 98.1 1.2E-05 2.6E-10 70.1 8.7 55 86-140 248-307 (323)
33 COG2365 Protein tyrosine/serin 98.1 2.4E-05 5.2E-10 65.8 9.1 49 85-133 136-184 (249)
34 PHA02740 protein tyrosine phos 98.1 1.2E-05 2.5E-10 69.4 7.1 55 85-139 221-280 (298)
35 PHA02738 hypothetical protein; 97.9 2.4E-05 5.3E-10 68.1 6.7 55 85-139 227-286 (320)
36 KOG0790|consensus 97.8 6.4E-05 1.4E-09 67.1 7.7 106 33-139 372-513 (600)
37 KOG0792|consensus 97.7 8.8E-05 1.9E-09 72.0 6.6 56 85-140 1063-1123(1144)
38 KOG2386|consensus 97.5 4.8E-05 1E-09 67.3 1.9 61 83-143 122-182 (393)
39 COG5599 PTP2 Protein tyrosine 97.4 0.00018 4E-09 60.3 4.0 57 84-140 217-287 (302)
40 PF04179 Init_tRNA_PT: Initiat 97.3 0.0029 6.4E-08 57.5 11.5 120 17-142 290-449 (451)
41 PF14566 PTPlike_phytase: Inos 97.3 0.00036 7.9E-09 54.1 4.4 45 65-109 90-148 (149)
42 KOG0789|consensus 97.2 0.00059 1.3E-08 60.8 6.0 55 85-139 299-359 (415)
43 KOG0791|consensus 96.9 0.0034 7.3E-08 55.0 6.8 60 84-143 286-350 (374)
44 KOG0793|consensus 95.8 0.013 2.8E-07 55.3 4.6 71 67-137 894-985 (1004)
45 KOG4228|consensus 94.7 0.097 2.1E-06 51.8 7.1 52 84-135 1017-1073(1087)
46 KOG4228|consensus 94.4 0.08 1.7E-06 52.4 5.8 52 84-135 729-785 (1087)
47 PF14671 DSPn: Dual specificit 93.7 0.096 2.1E-06 40.3 3.9 44 84-127 65-112 (141)
48 KOG4471|consensus 89.1 0.37 8E-06 45.0 3.2 27 83-109 372-399 (717)
49 PRK01415 hypothetical protein; 87.8 0.6 1.3E-05 39.3 3.4 86 19-114 104-197 (247)
50 COG0607 PspE Rhodanese-related 84.0 4.8 0.0001 28.2 6.3 67 36-110 14-84 (110)
51 cd01518 RHOD_YceA Member of th 76.1 3.6 7.8E-05 28.9 3.3 29 83-114 59-87 (101)
52 cd01533 4RHOD_Repeat_2 Member 72.3 5.9 0.00013 28.2 3.7 27 84-113 65-91 (109)
53 PF03861 ANTAR: ANTAR domain; 70.8 6.9 0.00015 24.8 3.3 26 100-125 15-40 (56)
54 PF06602 Myotub-related: Myotu 70.8 3.7 7.9E-05 36.4 2.7 21 83-103 229-249 (353)
55 PLN02160 thiosulfate sulfurtra 69.0 6.6 0.00014 29.6 3.4 29 83-114 79-107 (136)
56 smart00400 ZnF_CHCC zinc finge 68.6 6.4 0.00014 24.8 2.8 32 89-122 23-54 (55)
57 cd01448 TST_Repeat_1 Thiosulfa 67.8 8.4 0.00018 27.9 3.8 30 83-114 77-106 (122)
58 cd01523 RHOD_Lact_B Member of 66.5 7 0.00015 27.3 3.0 30 82-114 58-87 (100)
59 PF02673 BacA: Bacitracin resi 65.8 6.8 0.00015 33.2 3.3 28 93-122 159-186 (259)
60 KOG1089|consensus 65.8 6.3 0.00014 37.0 3.2 26 84-109 343-369 (573)
61 PF11460 DUF3007: Protein of u 65.5 26 0.00056 25.5 5.7 47 128-179 57-103 (104)
62 PRK00142 putative rhodanese-re 64.6 8.3 0.00018 33.5 3.6 29 83-114 169-197 (314)
63 PRK12554 undecaprenyl pyrophos 63.3 7.7 0.00017 33.2 3.1 26 94-121 166-191 (276)
64 TIGR00753 undec_PP_bacA undeca 62.9 8.1 0.00018 32.7 3.2 26 94-121 160-185 (255)
65 TIGR03865 PQQ_CXXCW PQQ-depend 62.5 9.7 0.00021 29.7 3.4 29 84-114 115-143 (162)
66 PRK00281 undecaprenyl pyrophos 60.2 9.7 0.00021 32.4 3.2 26 94-121 164-189 (268)
67 TIGR00853 pts-lac PTS system, 57.4 9.3 0.0002 27.1 2.2 19 84-103 2-20 (95)
68 PRK05320 rhodanese superfamily 57.0 13 0.00028 31.4 3.4 28 84-114 174-201 (257)
69 cd01528 RHOD_2 Member of the R 55.3 19 0.0004 25.1 3.6 28 84-114 57-84 (101)
70 PF01807 zf-CHC2: CHC2 zinc fi 54.7 15 0.00032 26.1 2.9 36 89-126 54-89 (97)
71 cd01534 4RHOD_Repeat_3 Member 53.5 20 0.00042 24.7 3.4 27 84-113 55-81 (95)
72 cd01532 4RHOD_Repeat_1 Member 53.0 25 0.00054 24.1 3.9 29 84-113 49-77 (92)
73 cd01520 RHOD_YbbB Member of th 52.6 22 0.00047 26.2 3.7 30 82-113 83-112 (128)
74 cd05567 PTS_IIB_mannitol PTS_I 49.4 18 0.00038 24.9 2.6 14 86-99 1-14 (87)
75 KOG1530|consensus 49.1 34 0.00074 26.1 4.1 17 84-101 88-104 (136)
76 cd01526 RHOD_ThiF Member of th 48.4 26 0.00057 25.4 3.5 28 83-113 70-97 (122)
77 cd01447 Polysulfide_ST Polysul 48.3 22 0.00048 24.5 3.0 29 82-113 58-86 (103)
78 PF08094 Toxin_24: Conotoxin T 47.2 13 0.00029 20.5 1.3 23 184-206 5-30 (33)
79 PF10302 DUF2407: DUF2407 ubiq 47.0 11 0.00025 26.9 1.3 11 85-95 85-95 (97)
80 cd01519 RHOD_HSP67B2 Member of 45.6 32 0.0007 23.9 3.5 28 84-114 65-92 (106)
81 cd01525 RHOD_Kc Member of the 45.3 32 0.00069 23.9 3.5 26 85-113 65-90 (105)
82 cd01522 RHOD_1 Member of the R 44.9 25 0.00055 25.4 3.0 27 84-113 63-89 (117)
83 cd01529 4RHOD_Repeats Member o 44.5 31 0.00067 23.7 3.3 28 83-113 54-81 (96)
84 COG1968 BacA Undecaprenyl pyro 42.9 28 0.00061 29.7 3.2 26 94-121 165-190 (270)
85 COG3707 AmiR Response regulato 41.0 28 0.00061 28.2 2.8 23 103-125 150-172 (194)
86 PHA02540 61 DNA primase; Provi 40.9 51 0.0011 29.1 4.6 39 85-126 51-90 (337)
87 cd01444 GlpE_ST GlpE sulfurtra 40.6 47 0.001 22.4 3.7 28 83-113 54-81 (96)
88 PRK09590 celB cellobiose phosp 39.4 26 0.00057 25.3 2.2 14 86-99 2-15 (104)
89 cd01530 Cdc25 Cdc25 phosphatas 37.9 38 0.00083 24.8 3.0 25 83-109 66-91 (121)
90 cd00687 Terpene_cyclase_nonpla 37.6 1.6E+02 0.0035 24.8 7.2 23 103-125 231-253 (303)
91 TIGR02981 phageshock_pspE phag 37.1 49 0.0011 23.5 3.4 27 84-113 57-83 (101)
92 PF02302 PTS_IIB: PTS system, 36.9 31 0.00067 23.4 2.2 13 87-99 1-13 (90)
93 cd01527 RHOD_YgaP Member of th 36.2 44 0.00096 22.9 3.0 18 82-100 51-68 (99)
94 COG4738 Predicted transcriptio 35.6 30 0.00065 25.7 2.0 21 93-113 22-42 (124)
95 TIGR00640 acid_CoA_mut_C methy 35.0 41 0.00089 25.3 2.8 30 22-51 86-115 (132)
96 cd04445 DEP_PLEK1 DEP (Disheve 33.2 38 0.00082 24.4 2.2 37 83-124 22-59 (99)
97 PF09707 Cas_Cas2CT1978: CRISP 32.4 20 0.00043 25.2 0.6 24 7-30 12-35 (86)
98 PF11237 DUF3038: Protein of u 32.3 2.2E+02 0.0047 22.6 6.5 46 98-144 70-115 (171)
99 PRK10287 thiosulfate:cyanide s 32.0 52 0.0011 23.6 2.8 18 84-102 59-76 (104)
100 PF03668 ATP_bind_2: P-loop AT 31.7 35 0.00077 29.3 2.2 18 87-104 244-261 (284)
101 PRK05600 thiamine biosynthesis 31.5 58 0.0012 29.0 3.6 25 86-113 333-357 (370)
102 cd01443 Cdc25_Acr2p Cdc25 enzy 31.2 62 0.0013 23.0 3.1 18 85-102 66-83 (113)
103 PF13720 Acetyltransf_11: Udp 31.1 1.6E+02 0.0034 20.2 5.0 35 94-128 26-63 (83)
104 cd01521 RHOD_PspE2 Member of t 30.7 83 0.0018 22.2 3.7 30 82-113 61-91 (110)
105 COG1660 Predicted P-loop-conta 29.8 37 0.00081 29.0 1.9 17 87-103 245-261 (286)
106 PF00581 Rhodanese: Rhodanese- 29.2 91 0.002 21.4 3.7 31 83-114 65-98 (113)
107 smart00450 RHOD Rhodanese Homo 28.4 96 0.0021 20.4 3.6 29 83-114 54-82 (100)
108 PRK11784 tRNA 2-selenouridine 27.4 77 0.0017 28.0 3.6 28 84-113 87-114 (345)
109 PRK07411 hypothetical protein; 27.4 70 0.0015 28.6 3.4 29 83-114 340-368 (390)
110 COG0358 DnaG DNA primase (bact 27.3 3.5E+02 0.0076 25.5 8.2 53 72-127 37-91 (568)
111 cd02071 MM_CoA_mut_B12_BD meth 27.1 60 0.0013 23.7 2.5 31 22-52 83-113 (122)
112 TIGR02094 more_P_ylases alpha- 26.9 68 0.0015 30.6 3.4 38 85-125 160-200 (601)
113 PF12921 ATP13: Mitochondrial 26.7 1.1E+02 0.0024 22.7 3.9 41 101-145 57-100 (126)
114 TIGR03573 WbuX N-acetyl sugar 26.6 1.3E+02 0.0028 26.4 4.9 32 92-124 283-314 (343)
115 PRK05416 glmZ(sRNA)-inactivati 26.2 49 0.0011 28.4 2.1 18 87-104 247-264 (288)
116 PF09419 PGP_phosphatase: Mito 25.6 51 0.0011 26.0 2.0 33 14-47 12-46 (168)
117 PF07359 LEAP-2: Liver-express 25.5 34 0.00074 23.3 0.8 18 190-207 52-69 (77)
118 PF08283 Gemini_AL1_M: Geminiv 25.5 2.2E+02 0.0048 20.7 5.1 62 111-178 14-78 (106)
119 COG2185 Sbm Methylmalonyl-CoA 24.5 82 0.0018 24.3 2.9 32 16-49 92-123 (143)
120 PHA03338 US22 family homolog; 24.3 73 0.0016 27.6 2.7 39 90-128 161-200 (344)
121 cd01531 Acr2p Eukaryotic arsen 24.3 90 0.002 22.1 3.0 20 85-104 62-81 (113)
122 TIGR01873 cas_CT1978 CRISPR-as 24.2 35 0.00077 24.0 0.7 25 6-30 11-35 (87)
123 PF14420 Clr5: Clr5 domain 24.2 1.9E+02 0.0041 18.0 4.5 33 110-142 18-50 (54)
124 PF12554 MOZART1: Mitotic-spin 23.7 1.9E+02 0.0041 17.9 4.2 32 94-126 17-48 (48)
125 COG1440 CelA Phosphotransferas 23.6 67 0.0015 23.3 2.1 14 86-99 2-15 (102)
126 PRK10310 PTS system galactitol 23.5 66 0.0014 22.6 2.0 17 86-102 3-19 (94)
127 cd05564 PTS_IIB_chitobiose_lic 23.0 64 0.0014 22.7 1.9 13 87-99 1-13 (96)
128 cd05565 PTS_IIB_lactose PTS_II 22.8 72 0.0016 22.8 2.1 19 87-107 2-20 (99)
129 PRK10499 PTS system N,N'-diace 22.8 79 0.0017 22.8 2.4 31 85-115 3-34 (106)
130 PF14698 ASL_C2: Argininosucci 22.6 1.7E+02 0.0037 19.3 3.9 24 100-124 4-27 (70)
131 COG4347 Predicted membrane pro 22.5 1E+02 0.0023 24.7 3.1 41 68-124 44-84 (200)
132 PRK11558 putative ssRNA endonu 22.2 38 0.00081 24.4 0.5 24 7-30 14-37 (97)
133 cd01449 TST_Repeat_2 Thiosulfa 22.1 1.3E+02 0.0028 21.2 3.4 27 84-113 77-103 (118)
134 COG1636 Uncharacterized protei 21.8 4.5E+02 0.0097 21.4 6.7 84 85-186 3-86 (204)
135 PRK01269 tRNA s(4)U8 sulfurtra 21.3 1.1E+02 0.0023 28.3 3.4 28 83-113 447-474 (482)
136 KOG1004|consensus 20.9 2.1E+02 0.0046 23.7 4.6 40 83-124 183-222 (230)
137 PF08114 PMP1_2: ATPase proteo 20.8 33 0.00071 20.6 0.0 25 84-110 7-31 (43)
138 TIGR02093 P_ylase glycogen/sta 20.7 1.8E+02 0.004 28.8 5.0 41 85-128 296-340 (794)
139 COG3414 SgaB Phosphotransferas 20.6 1.4E+02 0.003 21.1 3.2 31 86-116 2-34 (93)
140 KOG3248|consensus 20.5 3.8E+02 0.0083 23.8 6.4 51 113-168 216-266 (421)
141 TIGR01391 dnaG DNA primase, ca 20.3 1.1E+02 0.0025 27.5 3.4 37 89-127 55-91 (415)
No 1
>KOG1718|consensus
Probab=100.00 E-value=8.3e-34 Score=219.12 Aligned_cols=129 Identities=26% Similarity=0.388 Sum_probs=115.5
Q ss_pred CCCccceeCCeEEcCccCcCCHHHHHhCCCceEEEcccCCCccCCCCcccCCCCCceEE-EcCCCCCcccc---------
Q psy1264 13 KDVKRIVLPGLYVGNYRDSKDAVQLDRFNITHIVAIHDSARKIHPVSKTKASQPANHYQ-VDPRGGPDQVY--------- 82 (209)
Q Consensus 13 ~~~~~~I~p~LylG~~~~a~~~~~L~~~gIt~Vinl~~~~~~~~~~~~~~~~~~~~~y~-I~~~D~~~~~~--------- 82 (209)
..++++|+|+||+++-..+.+...|+++|||+|||.+.+.+.... +.+.|. ||+.|.|...+
T Consensus 14 ~~~~SqIt~sLfl~~GvaA~~k~~l~~~~It~IiNat~E~pn~~l--------~~~qy~kv~~~D~p~~~l~~hfD~vAD 85 (198)
T KOG1718|consen 14 IGGMSQITPSLFLSNGVAANDKLLLKKRKITCIINATTEVPNTSL--------PDIQYMKVPLEDTPQARLYDHFDPVAD 85 (198)
T ss_pred ccchhhcCcceeEeccccccCHHHHHhcCceEEEEcccCCCCccC--------CCceeEEEEcccCCcchhhhhhhHHHH
Confidence 478999999999998788889999999999999999887653222 227788 99999998773
Q ss_pred ------cCCCcEEEEcCCCCchhHHHHHHHHHHhCCCCHHHHHHHHHhhCCCccCCHHHHHHHHHHHHHHHHH
Q psy1264 83 ------LSEQNISHFSLAGMSRSVTVTIAYIMSVTSLNWKEALKVVRVGRAIANPNNGFQKQLQDFECFRLAD 149 (209)
Q Consensus 83 ------~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~~~~~A~~~vr~~Rp~i~pn~~f~~qL~~~e~~~l~~ 149 (209)
..||++||||.+|+|||+++++||||++.+|++.||+.++|++||.+.||.|||+||..||+.+.++
T Consensus 86 ~I~~v~~~gG~TLvHC~AGVSRSAsLClAYLmK~~~msLreAy~~vKa~RpiIRPN~GFw~QLi~YE~qL~g~ 158 (198)
T KOG1718|consen 86 KIHSVIMRGGKTLVHCVAGVSRSASLCLAYLMKYHCMSLREAYHWVKARRPIIRPNVGFWRQLIDYEQQLFGN 158 (198)
T ss_pred HHHHHHhcCCcEEEEEccccchhHHHHHHHHHHHccchHHHHHHHHHhhCceeCCCccHHHHHHHHHHHhcCC
Confidence 6799999999999999999999999999999999999999999999999999999999999976553
No 2
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.98 E-value=1e-31 Score=205.59 Aligned_cols=121 Identities=28% Similarity=0.485 Sum_probs=107.2
Q ss_pred ccceeCCeEEcCccCcCCHHHHHhCCCceEEEcccCCCccCCCCcccCCCCCceEE-EcCCCCCcccc------------
Q psy1264 16 KRIVLPGLYVGNYRDSKDAVQLDRFNITHIVAIHDSARKIHPVSKTKASQPANHYQ-VDPRGGPDQVY------------ 82 (209)
Q Consensus 16 ~~~I~p~LylG~~~~a~~~~~L~~~gIt~Vinl~~~~~~~~~~~~~~~~~~~~~y~-I~~~D~~~~~~------------ 82 (209)
|++|.|+||+|+.+++.+.+.|+++||++||||+.+.+... ...+.|. +|+.|.+..++
T Consensus 1 ~~~I~~~l~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~~~~~--------~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~ 72 (138)
T smart00195 1 PSEILPHLYLGSYSSALNLALLKKLGITHVINVTNEVPNLN--------KKGFTYLGVPILDNTETKISPYFPEAVEFIE 72 (138)
T ss_pred CcEEeCCeEECChhHcCCHHHHHHcCCCEEEEccCCCCCCC--------CCCCEEEEEECCCCCCCChHHHHHHHHHHHH
Confidence 57999999999999999999999999999999988754321 1236777 99999644331
Q ss_pred ---cCCCcEEEEcCCCCchhHHHHHHHHHHhCCCCHHHHHHHHHhhCCCccCCHHHHHHHHHHHH
Q psy1264 83 ---LSEQNISHFSLAGMSRSVTVTIAYIMSVTSLNWKEALKVVRVGRAIANPNNGFQKQLQDFEC 144 (209)
Q Consensus 83 ---~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~~~~~A~~~vr~~Rp~i~pn~~f~~qL~~~e~ 144 (209)
..+++|||||.+|+|||+++++||||...||++++|+++|+++||.+.||.+|++||++||+
T Consensus 73 ~~~~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~~~~~A~~~v~~~R~~~~p~~~~~~qL~~~e~ 137 (138)
T smart00195 73 DAEKKGGKVLVHCQAGVSRSATLIIAYLMKYRNLSLNDAYDFVKDRRPIISPNFGFLRQLIEYER 137 (138)
T ss_pred HHhcCCCeEEEECCCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHHCCccCCCHhHHHHHHHHhh
Confidence 46789999999999999999999999999999999999999999999999999999999997
No 3
>KOG1716|consensus
Probab=99.96 E-value=1.1e-29 Score=216.89 Aligned_cols=133 Identities=27% Similarity=0.400 Sum_probs=117.8
Q ss_pred CCCccceeCCeEEcCccCcCCHHHHHhCCCceEEEcccCCCccCCCCcccCCCCCceEE-EcCCCCCcccc---------
Q psy1264 13 KDVKRIVLPGLYVGNYRDSKDAVQLDRFNITHIVAIHDSARKIHPVSKTKASQPANHYQ-VDPRGGPDQVY--------- 82 (209)
Q Consensus 13 ~~~~~~I~p~LylG~~~~a~~~~~L~~~gIt~Vinl~~~~~~~~~~~~~~~~~~~~~y~-I~~~D~~~~~~--------- 82 (209)
..++.+|.|+||+|+...+.+.+.++++||++|+|+....+..+. .....++|. |++.|.+..++
T Consensus 72 ~~~~~~i~p~l~lg~~~~~~~~~~l~~~~it~vln~~~~~~~~~~-----~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~ 146 (285)
T KOG1716|consen 72 GNPIVEILPNLYLGSQGVASDPDLLKKLGITHVLNVSSSCPNPRF-----LKEQGIKYLRIPVEDNPSTDILQHFPEAIS 146 (285)
T ss_pred cCCceeecCCceecCcccccchhhHHHcCCCEEEEecccCCcccc-----ccccCceEEeccccCCccccHHHHHHHHHH
Confidence 367899999999999999999999999999999999988765320 011238888 99999999884
Q ss_pred ------cCCCcEEEEcCCCCchhHHHHHHHHHHhCCCCHHHHHHHHHhhCCCccCCHHHHHHHHHHHHHHHHHH
Q psy1264 83 ------LSEQNISHFSLAGMSRSVTVTIAYIMSVTSLNWKEALKVVRVGRAIANPNNGFQKQLQDFECFRLADE 150 (209)
Q Consensus 83 ------~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~~~~~A~~~vr~~Rp~i~pn~~f~~qL~~~e~~~l~~~ 150 (209)
.++++|||||.+|+|||+|+++||||++++|++++|+++|+++||.+.||.+|+.||++||+.+.++.
T Consensus 147 fI~~a~~~~~~vlVHC~~GvSRSat~viAYlM~~~~~~l~~A~~~vk~~R~~i~PN~gf~~QL~~~e~~l~~~~ 220 (285)
T KOG1716|consen 147 FIEKAREKGGKVLVHCQAGVSRSATLVIAYLMKYEGLSLEDAYELVKSRRPIISPNFGFLRQLLEFEKRLSKKS 220 (285)
T ss_pred HHHHHHhCCCeEEEEcCCccchhHHHHHHHHHHHcCCCHHHHHHHHHHhCCccCCCHHHHHHHHHHHHhhccCC
Confidence 67899999999999999999999999999999999999999999999999999999999999765543
No 4
>KOG1717|consensus
Probab=99.96 E-value=1.3e-29 Score=208.56 Aligned_cols=129 Identities=27% Similarity=0.363 Sum_probs=116.5
Q ss_pred CCccceeCCeEEcCccCcCCHHHHHhCCCceEEEcccCCCccCCCCcccCCCCCceEE-EcCCCCCcccc----------
Q psy1264 14 DVKRIVLPGLYVGNYRDSKDAVQLDRFNITHIVAIHDSARKIHPVSKTKASQPANHYQ-VDPRGGPDQVY---------- 82 (209)
Q Consensus 14 ~~~~~I~p~LylG~~~~a~~~~~L~~~gIt~Vinl~~~~~~~~~~~~~~~~~~~~~y~-I~~~D~~~~~~---------- 82 (209)
..|-+|+|+||+|+..++.+.+.|++.||++||||+...+..+... +.++|. ||+.|...+++
T Consensus 170 ~FPV~ilp~LYLg~a~ds~NldvLkk~gI~yviNVTpnlpn~fe~~------g~f~YkqipisDh~Sqnls~ffpEAIsf 243 (343)
T KOG1717|consen 170 SFPVEILPNLYLGCAKDSTNLDVLKKYGIKYVINVTPNLPNNFENN------GEFIYKQIPISDHASQNLSQFFPEAISF 243 (343)
T ss_pred CcchhhccchhcccccccccHHHHHhcCceEEEecCCCCcchhhcC------CceeEEeeeccchhhhhhhhhhHHHHHH
Confidence 4467999999999999999999999999999999998877666553 348899 99999988884
Q ss_pred -----cCCCcEEEEcCCCCchhHHHHHHHHHHhCCCCHHHHHHHHHhhCCCccCCHHHHHHHHHHHHHHHH
Q psy1264 83 -----LSEQNISHFSLAGMSRSVTVTIAYIMSVTSLNWKEALKVVRVGRAIANPNNGFQKQLQDFECFRLA 148 (209)
Q Consensus 83 -----~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~~~~~A~~~vr~~Rp~i~pn~~f~~qL~~~e~~~l~ 148 (209)
.++..|||||.+|||||+||++||||++..+++.+|+.+|+.++..|.||.+|+-||..||+.+-.
T Consensus 244 IdeArsk~cgvLVHClaGISRSvTvtvaYLMqkl~lslndAyd~Vk~kksnisPNFnFMgQLldfertlgl 314 (343)
T KOG1717|consen 244 IDEARSKNCGVLVHCLAGISRSVTVTVAYLMQKLNLSLNDAYDFVKHKKSNISPNFNFMGQLLDFERTLGL 314 (343)
T ss_pred HHHhhccCCcEEEeeeccccchhHHHHHHHHHHhccchhhHHHHHHHhccCCCCCcchhHHHHHHHHHhhc
Confidence 466789999999999999999999999999999999999999999999999999999999996543
No 5
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.96 E-value=4.5e-29 Score=190.45 Aligned_cols=123 Identities=32% Similarity=0.496 Sum_probs=106.5
Q ss_pred CccceeCCeEEcCccCcCCHHHHHhCCCceEEEcccCCCccCCCCcccCCCCCceEE-EcCCCCCcccc-----------
Q psy1264 15 VKRIVLPGLYVGNYRDSKDAVQLDRFNITHIVAIHDSARKIHPVSKTKASQPANHYQ-VDPRGGPDQVY----------- 82 (209)
Q Consensus 15 ~~~~I~p~LylG~~~~a~~~~~L~~~gIt~Vinl~~~~~~~~~~~~~~~~~~~~~y~-I~~~D~~~~~~----------- 82 (209)
++++|.|+||+|+.+++.+.+.|+++||++|||++.+.+. +. .......|. +|+.|.+..++
T Consensus 1 ~~~~i~~~l~~g~~~~~~d~~~L~~~gi~~VI~l~~~~~~--~~----~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i 74 (139)
T cd00127 1 PLSEITPGLYLGSYPAASDKELLKKLGITHVLNVAKEVPN--EN----LFLSDFNYLYVPILDLPSQDISKYFDEAVDFI 74 (139)
T ss_pred CcCEEcCCeEECChhHhcCHHHHHHcCCCEEEEcccCCCC--cc----cCCCCceEEEEEceeCCCCChHHHHHHHHHHH
Confidence 4789999999999999999999999999999999987653 11 112335666 88888764431
Q ss_pred ----cCCCcEEEEcCCCCchhHHHHHHHHHHhCCCCHHHHHHHHHhhCCCccCCHHHHHHHHHHH
Q psy1264 83 ----LSEQNISHFSLAGMSRSVTVTIAYIMSVTSLNWKEALKVVRVGRAIANPNNGFQKQLQDFE 143 (209)
Q Consensus 83 ----~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~~~~~A~~~vr~~Rp~i~pn~~f~~qL~~~e 143 (209)
.++++|||||.+|+|||+++++||||...+|++++|+++||++||.+.||.+|++||.+||
T Consensus 75 ~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~a~~~vr~~r~~~~~~~~~~~~l~~~~ 139 (139)
T cd00127 75 DDAREKGGKVLVHCLAGVSRSATLVIAYLMKTLGLSLREAYEFVKSRRPIISPNAGFMRQLKEYE 139 (139)
T ss_pred HHHHhcCCcEEEECCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHCCccCCCHHHHHHHHHhC
Confidence 4678999999999999999999999999999999999999999999999999999999996
No 6
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.96 E-value=6.4e-29 Score=188.67 Aligned_cols=117 Identities=26% Similarity=0.421 Sum_probs=100.4
Q ss_pred eEEcCccCcCCHHHHHhCCCceEEEcccCCCccCCCCcccCCCCCceEE-EcCCCCCcccc---------------cCCC
Q psy1264 23 LYVGNYRDSKDAVQLDRFNITHIVAIHDSARKIHPVSKTKASQPANHYQ-VDPRGGPDQVY---------------LSEQ 86 (209)
Q Consensus 23 LylG~~~~a~~~~~L~~~gIt~Vinl~~~~~~~~~~~~~~~~~~~~~y~-I~~~D~~~~~~---------------~~~~ 86 (209)
||+|+.+++. .+.++++||++|||++.+.+... .......+|+ +|+.|....++ .+++
T Consensus 1 lylG~~~~a~-~~~l~~~~I~~Vin~~~~~~~~~-----~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~ 74 (133)
T PF00782_consen 1 LYLGSYPAAS-IAFLKNLGITHVINLQEECPNPY-----FYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGG 74 (133)
T ss_dssp EEEEEHHHHC-HHHHHHTTEEEEEECSSSSSTSH-----HHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTS
T ss_pred CEEeCHHHHh-HHHHHHCCCCEEEEccCCCcCch-----hcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccc
Confidence 7999999999 99999999999999998765310 0112236777 99888544431 5789
Q ss_pred cEEEEcCCCCchhHHHHHHHHHHhCCCCHHHHHHHHHhhCCCccCCHHHHHHHHHHHHH
Q psy1264 87 NISHFSLAGMSRSVTVTIAYIMSVTSLNWKEALKVVRVGRAIANPNNGFQKQLQDFECF 145 (209)
Q Consensus 87 ~VLVHC~~G~sRS~tvv~AYLm~~~~~~~~~A~~~vr~~Rp~i~pn~~f~~qL~~~e~~ 145 (209)
+|||||.+|+|||+++++||||...+|++++|+++|+++||.+.||.+|++||.+||++
T Consensus 75 ~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~e~~ 133 (133)
T PF00782_consen 75 KVLVHCKAGLSRSGAVAAAYLMKKNGMSLEEAIEYVRSRRPQINPNPSFIRQLYEYEKK 133 (133)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHTSSHHHHHHHHHHHSTTSTHHHHHHHHHHHHHHH
T ss_pred eeEEEeCCCcccchHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999973
No 7
>PRK12361 hypothetical protein; Provisional
Probab=99.91 E-value=3.3e-24 Score=197.85 Aligned_cols=127 Identities=18% Similarity=0.169 Sum_probs=106.8
Q ss_pred CccceeCCeEEcCccCcCCHHHHHhCCCceEEEcccCCCccCCCCcccCCCCCceEE-EcCCCCCcccc-----------
Q psy1264 15 VKRIVLPGLYVGNYRDSKDAVQLDRFNITHIVAIHDSARKIHPVSKTKASQPANHYQ-VDPRGGPDQVY----------- 82 (209)
Q Consensus 15 ~~~~I~p~LylG~~~~a~~~~~L~~~gIt~Vinl~~~~~~~~~~~~~~~~~~~~~y~-I~~~D~~~~~~----------- 82 (209)
.+++|.|+||+|+.+.+.|.+.|+++||++|||++.+.+..... .....++|+ ||+.|...+..
T Consensus 94 ~~~~I~~~l~lG~~~~a~d~~~L~~~gI~~Vldlt~E~~~~~~~----~~~~~i~yl~iPi~D~~~p~~~~l~~a~~~i~ 169 (547)
T PRK12361 94 AIQKIDENLYLGCRLFPADLEKLKSNKITAILDVTAEFDGLDWS----LTEEDIDYLNIPILDHSVPTLAQLNQAINWIH 169 (547)
T ss_pred cceEEcCcEEECCCCCcccHHHHHHcCCCEEEEccccccccccc----ccccCceEEEeecCCCCCCcHHHHHHHHHHHH
Confidence 45899999999999999999999999999999998765421111 011236788 99999754431
Q ss_pred ---cCCCcEEEEcCCCCchhHHHHHHHHHHh-CCCCHHHHHHHHHhhCCCccCCHHHHHHHHHHHHH
Q psy1264 83 ---LSEQNISHFSLAGMSRSVTVTIAYIMSV-TSLNWKEALKVVRVGRAIANPNNGFQKQLQDFECF 145 (209)
Q Consensus 83 ---~~~~~VLVHC~~G~sRS~tvv~AYLm~~-~~~~~~~A~~~vr~~Rp~i~pn~~f~~qL~~~e~~ 145 (209)
.++++|||||.+|+|||+++++||||.+ .++++++|+++||++||.+.||.+|+++|++|.+.
T Consensus 170 ~~~~~~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~v~~n~~q~~~l~~~~~~ 236 (547)
T PRK12361 170 RQVRANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRKTARLNKRQLRALEKMLEQ 236 (547)
T ss_pred HHHHCCCeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHc
Confidence 4678999999999999999999999976 58999999999999999999999999999998765
No 8
>KOG1719|consensus
Probab=99.86 E-value=9.2e-22 Score=150.41 Aligned_cols=136 Identities=16% Similarity=0.141 Sum_probs=110.5
Q ss_pred cccccccCCCCccceeCCeEEcCccC-cCCHHHHHhCCCceEEEcccCCCccCCCCcccCCCCCceEE-EcCCCCCccc-
Q psy1264 5 QIQIKDWKKDVKRIVLPGLYVGNYRD-SKDAVQLDRFNITHIVAIHDSARKIHPVSKTKASQPANHYQ-VDPRGGPDQV- 81 (209)
Q Consensus 5 ~~~~~~~~~~~~~~I~p~LylG~~~~-a~~~~~L~~~gIt~Vinl~~~~~~~~~~~~~~~~~~~~~y~-I~~~D~~~~~- 81 (209)
+++..+| +|...+.+|..+. +.+.+.++..|+..|+.+.++.+...+.. ..... +++++ ||..|.....
T Consensus 20 ~s~~~wy------~~~~~v~~~~~~FrS~~~~~i~ke~v~gvv~~ne~yE~~a~s~-~wk~~-giE~L~i~T~D~~~~Ps 91 (183)
T KOG1719|consen 20 ASAFRWY------RIDEFVILGAMPFRSMDVPLIKKENVGGVVTLNEPYELLAPSN-LWKNY-GIEFLVIPTRDYTGAPS 91 (183)
T ss_pred Hhhhcee------eecceEEEeecccccccchHHHhcCCCeEEEeCCchhhhhhhH-HHHhc-cceeEEeccccccCCCC
Confidence 6677777 6777788888764 45889999999999999998876544443 11122 25555 9988874433
Q ss_pred ---------c-----cCCCcEEEEcCCCCchhHHHHHHHHHHhCCCCHHHHHHHHHhhCCCccCCHHHHHHHHHHHHHHH
Q psy1264 82 ---------Y-----LSEQNISHFSLAGMSRSVTVTIAYIMSVTSLNWKEALKVVRVGRAIANPNNGFQKQLQDFECFRL 147 (209)
Q Consensus 82 ---------~-----~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~~~~~A~~~vr~~Rp~i~pn~~f~~qL~~~e~~~l 147 (209)
| ..|+.|||||++|.+||+|+++||||...+|+.++|+++||++||.+-..+++|+.|.+|-+...
T Consensus 92 ~~~i~~aVeFi~k~asLGktvYVHCKAGRtRSaTvV~cYLmq~~~wtpe~A~~~vr~iRp~VlL~~~Qw~~l~ef~~~~~ 171 (183)
T KOG1719|consen 92 LENIQKAVEFIHKNASLGKTVYVHCKAGRTRSATVVACYLMQHKNWTPEAAVEHVRKIRPRVLLRPAQWDVLKEFYKQIV 171 (183)
T ss_pred HHHHHHHHHHHHhccccCCeEEEEecCCCccchhhhhhhhhhhcCCCHHHHHHHHHhcCcceeecHHHHHHHHHHHHHHH
Confidence 1 56889999999999999999999999999999999999999999999999999999999988655
Q ss_pred H
Q psy1264 148 A 148 (209)
Q Consensus 148 ~ 148 (209)
.
T Consensus 172 ~ 172 (183)
T KOG1719|consen 172 A 172 (183)
T ss_pred h
Confidence 4
No 9
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.85 E-value=2.2e-20 Score=147.76 Aligned_cols=130 Identities=16% Similarity=0.181 Sum_probs=99.0
Q ss_pred ccCCCCccceeCCeEEcCccCcC----CHHHHHhCCCceEEEcccCCCccCCCCcccCCCCCceEE-EcCCCCC--ccc-
Q psy1264 10 DWKKDVKRIVLPGLYVGNYRDSK----DAVQLDRFNITHIVAIHDSARKIHPVSKTKASQPANHYQ-VDPRGGP--DQV- 81 (209)
Q Consensus 10 ~~~~~~~~~I~p~LylG~~~~a~----~~~~L~~~gIt~Vinl~~~~~~~~~~~~~~~~~~~~~y~-I~~~D~~--~~~- 81 (209)
+-+...++-|.+.+++-..|... +.+.|+++||++||+++.+..+ +.. ....++.|. +|+.|.. ...
T Consensus 5 ~~~~~~~~~~~~r~~~~~~P~~~~~~~~l~~L~~~gI~~Iv~l~~~~~~--~~~---~~~~gi~~~~~p~~D~~~P~~~~ 79 (166)
T PTZ00242 5 ECKDRQIEYVLFKFLILDAPSPSNLPLYIKELQRYNVTHLVRVCGPTYD--AEL---LEKNGIEVHDWPFDDGAPPPKAV 79 (166)
T ss_pred cCCCcceeeeceEEEEecCCCcccHHHHHHHHHhCCCeEEEecCCCCCC--HHH---HHHCCCEEEecCCCCCCCCCHHH
Confidence 34455667788887776666543 4588999999999999764321 111 111236677 8877652 221
Q ss_pred ---c------------cCCCcEEEEcCCCCchhHHHHHHHHHHhCCCCHHHHHHHHHhhCCCccCCHHHHHHHHHHHHH
Q psy1264 82 ---Y------------LSEQNISHFSLAGMSRSVTVTIAYIMSVTSLNWKEALKVVRVGRAIANPNNGFQKQLQDFECF 145 (209)
Q Consensus 82 ---~------------~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~~~~~A~~~vr~~Rp~i~pn~~f~~qL~~~e~~ 145 (209)
+ ..+++|+|||.+|+|||++++++|||...++++++|+++|+++||.+ ++..|+.+|.+|++.
T Consensus 80 i~~~~~~i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~s~~eAi~~vr~~R~~~-i~~~Q~~~l~~~~~~ 157 (166)
T PTZ00242 80 IDNWLRLLDQEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYGGMEPLDAVGFVREKRKGA-INQTQLQFLKKYKPR 157 (166)
T ss_pred HHHHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCCC-chHHHHHHHHHHHHH
Confidence 1 23889999999999999999999999998899999999999999986 589999999999873
No 10
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.80 E-value=3e-19 Score=147.06 Aligned_cols=107 Identities=14% Similarity=0.180 Sum_probs=84.2
Q ss_pred CHHHHHhCCCceEEEcccCCCccCCCCcccCCCCCceEE-EcCCCC--Ccccc------------cCCCcEEEEcCCCCc
Q psy1264 33 DAVQLDRFNITHIVAIHDSARKIHPVSKTKASQPANHYQ-VDPRGG--PDQVY------------LSEQNISHFSLAGMS 97 (209)
Q Consensus 33 ~~~~L~~~gIt~Vinl~~~~~~~~~~~~~~~~~~~~~y~-I~~~D~--~~~~~------------~~~~~VLVHC~~G~s 97 (209)
.++.|++.||++||++++... .+.... ..++.++ +|+.|. |..+. ..|++|+|||.+|+|
T Consensus 108 yl~eLk~~gV~~lVrlcE~~Y--d~~~~~---~~GI~~~~lpipDg~aPs~~~i~~~l~~i~~~l~~g~~VaVHC~AGlG 182 (241)
T PTZ00393 108 YIKEMKNYNVTDLVRTCERTY--NDGEIT---SAGINVHELIFPDGDAPTVDIVSNWLTIVNNVIKNNRAVAVHCVAGLG 182 (241)
T ss_pred HHHHHHHcCCCEEEECCCCCC--CHHHHH---HcCCeEEEeecCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEECCCCCC
Confidence 558899999999999987542 112111 2235555 665555 43331 468899999999999
Q ss_pred hhHHHHHHHHHHhCCCCHHHHHHHHHhhCCCccCCHHHHHHHHHHHHHH
Q psy1264 98 RSVTVTIAYIMSVTSLNWKEALKVVRVGRAIANPNNGFQKQLQDFECFR 146 (209)
Q Consensus 98 RS~tvv~AYLm~~~~~~~~~A~~~vr~~Rp~i~pn~~f~~qL~~~e~~~ 146 (209)
||++++++|||. .||++++|+++||++||.+ +|..|++.|++|++..
T Consensus 183 RTGtl~AayLI~-~GmspeeAI~~VR~~RPgA-In~~Q~~fL~~y~~~~ 229 (241)
T PTZ00393 183 RAPVLASIVLIE-FGMDPIDAIVFIRDRRKGA-INKRQLQFLKAYKKKK 229 (241)
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhc
Confidence 999999999998 5999999999999999997 6999999999999854
No 11
>KOG1720|consensus
Probab=99.65 E-value=1.4e-15 Score=122.05 Aligned_cols=106 Identities=22% Similarity=0.195 Sum_probs=81.3
Q ss_pred HHHHhCCCceEEEcccCCCccCCCCcccCCCCCceEEEcCCCC--Ccccc-----------cCCCcEEEEcCCCCchhHH
Q psy1264 35 VQLDRFNITHIVAIHDSARKIHPVSKTKASQPANHYQVDPRGG--PDQVY-----------LSEQNISHFSLAGMSRSVT 101 (209)
Q Consensus 35 ~~L~~~gIt~Vinl~~~~~~~~~~~~~~~~~~~~~y~I~~~D~--~~~~~-----------~~~~~VLVHC~~G~sRS~t 101 (209)
..+++++++.|+.|.....+ +...... +..|+.++..|. |+.+. .++|+|.|||++|+|||++
T Consensus 88 ~~~~~~~v~s~vrln~~~yd--~~~f~~~--Gi~h~~l~f~Dg~tP~~~~v~~fv~i~e~~~~~g~iaVHCkaGlGRTG~ 163 (225)
T KOG1720|consen 88 QYFKNNNVTSIVRLNKRLYD--AKRFTDA--GIDHHDLFFADGSTPTDAIVKEFVKIVENAEKGGKIAVHCKAGLGRTGT 163 (225)
T ss_pred HHhhhcccceEEEcCCCCCC--hHHhccc--CceeeeeecCCCCCCCHHHHHHHHHHHHHHHhcCeEEEEeccCCCchhH
Confidence 45688999999999765421 1111211 123444555555 44442 4589999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhhCCCccCCHHHHHHHHHHHH
Q psy1264 102 VTIAYIMSVTSLNWKEALKVVRVGRAIANPNNGFQKQLQDFEC 144 (209)
Q Consensus 102 vv~AYLm~~~~~~~~~A~~~vr~~Rp~i~pn~~f~~qL~~~e~ 144 (209)
|++||||+.+||+..||+..||..||.+...+.+...|.++-.
T Consensus 164 liAc~lmy~~g~ta~eaI~~lR~~RpG~V~gpqQ~~l~~~q~~ 206 (225)
T KOG1720|consen 164 LIACYLMYEYGMTAGEAIAWLRICRPGAVIGPQQHKLLHKQRD 206 (225)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCCccccCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988888887765
No 12
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.53 E-value=6.9e-14 Score=112.00 Aligned_cols=75 Identities=21% Similarity=0.104 Sum_probs=58.8
Q ss_pred ceEE-EcCCCCCcccc--------------cCCCcEEEEcCCCCchhHHHHHHHHHHh-CCCCHHHHHHHHHhhCCCccC
Q psy1264 68 NHYQ-VDPRGGPDQVY--------------LSEQNISHFSLAGMSRSVTVTIAYIMSV-TSLNWKEALKVVRVGRAIANP 131 (209)
Q Consensus 68 ~~y~-I~~~D~~~~~~--------------~~~~~VLVHC~~G~sRS~tvv~AYLm~~-~~~~~~~A~~~vr~~Rp~i~p 131 (209)
..+. +|+.|....+. .++++|+|||.+|+|||+||++||||.+ .++..++|+.+++.+||. +
T Consensus 73 ~~~~~~~~~D~~~p~~~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~~~~r~~--~ 150 (180)
T COG2453 73 IQVLHLPILDGTVPDLEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRRRRPG--A 150 (180)
T ss_pred ceeeeeeecCCCCCcHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCc--c
Confidence 4444 88888866652 5677999999999999999999999999 667777888888888887 5
Q ss_pred CHHHHHHHHHHHH
Q psy1264 132 NNGFQKQLQDFEC 144 (209)
Q Consensus 132 n~~f~~qL~~~e~ 144 (209)
+....+++..++.
T Consensus 151 v~~~~q~~~~~e~ 163 (180)
T COG2453 151 VVTEIQHLFELEQ 163 (180)
T ss_pred cccHHHHHHHHHH
Confidence 6666666666655
No 13
>KOG2836|consensus
Probab=99.43 E-value=1.3e-12 Score=98.16 Aligned_cols=103 Identities=14% Similarity=0.246 Sum_probs=77.5
Q ss_pred CHHHHHhCCCceEEEcccCCCccCCCCcccCCCCCceEE-EcCCCCCccc--------------c--cCCCcEEEEcCCC
Q psy1264 33 DAVQLDRFNITHIVAIHDSARKIHPVSKTKASQPANHYQ-VDPRGGPDQV--------------Y--LSEQNISHFSLAG 95 (209)
Q Consensus 33 ~~~~L~~~gIt~Vinl~~~~~~~~~~~~~~~~~~~~~y~-I~~~D~~~~~--------------~--~~~~~VLVHC~~G 95 (209)
-++.|+++|+++||-+|+...+..+-. ..+++.+ .+.+|..... | ..+..|-|||.+|
T Consensus 33 fieELkKygvttvVRVCe~TYdt~~le-----k~GI~Vldw~f~dg~ppp~qvv~~w~~l~~~~f~e~p~~cvavhcvag 107 (173)
T KOG2836|consen 33 FIEELKKYGVTTVVRVCEPTYDTTPLE-----KEGITVLDWPFDDGAPPPNQVVDDWLSLVKTKFREEPGCCVAVHCVAG 107 (173)
T ss_pred HHHHHHhcCCeEEEEecccccCCchhh-----hcCceEeecccccCCCCchHHHHHHHHHHHHHHhhCCCCeEEEEeecc
Confidence 368899999999999998765433332 2336666 6666653322 1 4567799999999
Q ss_pred CchhHHHHHHHHHHhCCCCHHHHHHHHHhhCCCccCCHHHHHHHHHH
Q psy1264 96 MSRSVTVTIAYIMSVTSLNWKEALKVVRVGRAIANPNNGFQKQLQDF 142 (209)
Q Consensus 96 ~sRS~tvv~AYLm~~~~~~~~~A~~~vr~~Rp~i~pn~~f~~qL~~~ 142 (209)
+||++.+++..|+.. ||.+++|++++|++|..+ .|..+...|.+|
T Consensus 108 lgrapvlvalalie~-gmkyedave~ir~krrga-~n~kql~~leky 152 (173)
T KOG2836|consen 108 LGRAPVLVALALIEA-GMKYEDAVEMIRQKRRGA-INSKQLLYLEKY 152 (173)
T ss_pred cCcchHHHHHHHHHc-cccHHHHHHHHHHHhhcc-ccHHHHHHHHHh
Confidence 999999998888886 999999999999999995 787444444444
No 14
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.39 E-value=2.7e-13 Score=107.00 Aligned_cols=108 Identities=12% Similarity=0.073 Sum_probs=68.3
Q ss_pred CCccceeCCeEEcCccCcCCHHHHHhCCCceEEEcccCCCccCCCCcccCCCCCceEE-EcCCCCCc------cc-----
Q psy1264 14 DVKRIVLPGLYVGNYRDSKDAVQLDRFNITHIVAIHDSARKIHPVSKTKASQPANHYQ-VDPRGGPD------QV----- 81 (209)
Q Consensus 14 ~~~~~I~p~LylG~~~~a~~~~~L~~~gIt~Vinl~~~~~~~~~~~~~~~~~~~~~y~-I~~~D~~~------~~----- 81 (209)
.....|.|+||-|+++.+.+..+|+++|+++||+|..+.... +....+...++.+. +++..... ..
T Consensus 5 ~nF~~V~~~vYRS~~P~~~n~~fL~~L~LKTII~L~~e~~~~--~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~a 82 (164)
T PF03162_consen 5 LNFGMVEPGVYRSAQPTPANFPFLERLGLKTIINLRPEPPSQ--DFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEA 82 (164)
T ss_dssp TT-EEEETTEEEESS--HHHHHHHHHHT-SEEEE--SS---H--HHHHHHHHTT-EEEE-------GGG----HHHHHHH
T ss_pred ccccCCCCCccCCCCCChhhHHHHHHCCCceEEEecCCCCCH--HHHHHHhhcCceEEEeccccccCccccCCHHHHHHH
Confidence 456789999999999999999999999999999998764321 11111122335555 66654433 11
Q ss_pred c-----cCCCcEEEEcCCCCchhHHHHHHHHHHhCCCCHHHHHHHHHh
Q psy1264 82 Y-----LSEQNISHFSLAGMSRSVTVTIAYIMSVTSLNWKEALKVVRV 124 (209)
Q Consensus 82 ~-----~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~~~~~A~~~vr~ 124 (209)
+ ..+.+|||||..|..||++|+++|- +.+||++..|++..+.
T Consensus 83 L~~ild~~n~PvLiHC~~G~~rTG~vvg~lR-k~Q~W~~~~i~~Ey~~ 129 (164)
T PF03162_consen 83 LEIILDPRNYPVLIHCNHGKDRTGLVVGCLR-KLQGWSLSSIFDEYRR 129 (164)
T ss_dssp HHHHH-GGG-SEEEE-SSSSSHHHHHHHHHH-HHTTB-HHHHHHHHHH
T ss_pred HHHHhCCCCCCEEEEeCCCCcchhhHHHHHH-HHcCCCHHHHHHHHHH
Confidence 1 4578999999999999999999999 6789999999987775
No 15
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.37 E-value=4.1e-12 Score=97.22 Aligned_cols=112 Identities=14% Similarity=0.131 Sum_probs=81.6
Q ss_pred ccceeCCeEEcCccCcCCHHHHHhCCCceEEEcccCCCc-cCCCCc---ccCCCCCceEE-EcCCCCCc--cc---c---
Q psy1264 16 KRIVLPGLYVGNYRDSKDAVQLDRFNITHIVAIHDSARK-IHPVSK---TKASQPANHYQ-VDPRGGPD--QV---Y--- 82 (209)
Q Consensus 16 ~~~I~p~LylG~~~~a~~~~~L~~~gIt~Vinl~~~~~~-~~~~~~---~~~~~~~~~y~-I~~~D~~~--~~---~--- 82 (209)
+.+|.+.+|+++.+...+.+.|++.||+.|||+....+. ..+... ..+...+..|. ||+..... .+ |
T Consensus 2 ~~~i~~~~~~s~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~~~~~~~v~~f~~~ 81 (135)
T TIGR01244 2 IRKLTEHLYVSPQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAGDITPDDVETFRAA 81 (135)
T ss_pred ceEcCCCeeEcCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCCCCCHHHHHHHHHH
Confidence 358999999999999999999999999999999865432 222210 11122357777 88664321 11 1
Q ss_pred --cCCCcEEEEcCCCCchhHHHHHHHHHHhCCCCHHHHHHHHHhhCCCc
Q psy1264 83 --LSEQNISHFSLAGMSRSVTVTIAYIMSVTSLNWKEALKVVRVGRAIA 129 (209)
Q Consensus 83 --~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~~~~~A~~~vr~~Rp~i 129 (209)
...++||+||.+|. ||+++.+.++.. .|++.+++++..+..--.+
T Consensus 82 ~~~~~~pvL~HC~sG~-Rt~~l~al~~~~-~g~~~~~i~~~~~~~G~~~ 128 (135)
T TIGR01244 82 IGAAEGPVLAYCRSGT-RSSLLWGFRQAA-EGVPVEEIVRRAQAAGYDL 128 (135)
T ss_pred HHhCCCCEEEEcCCCh-HHHHHHHHHHHH-cCCCHHHHHHHHHHcCCCc
Confidence 34689999999999 998887666655 6999999999998765443
No 16
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.30 E-value=1.6e-12 Score=101.80 Aligned_cols=98 Identities=11% Similarity=0.141 Sum_probs=56.6
Q ss_pred CeEEcCccC----------cCCHHHHHhCCCceEEEcccCCCc---cCCCCcccCCCCCceEE-EcCCCCCcccc-----
Q psy1264 22 GLYVGNYRD----------SKDAVQLDRFNITHIVAIHDSARK---IHPVSKTKASQPANHYQ-VDPRGGPDQVY----- 82 (209)
Q Consensus 22 ~LylG~~~~----------a~~~~~L~~~gIt~Vinl~~~~~~---~~~~~~~~~~~~~~~y~-I~~~D~~~~~~----- 82 (209)
.|.+...|- ..|++.|++.|++.||.+++..+- ..++....+...++.++ +|+.|....++
T Consensus 42 ~Lglt~~PG~k~~d~~RdL~~DL~~Lk~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aPd~~~~~~ 121 (168)
T PF05706_consen 42 FLGLTFLPGCKFKDWRRDLQADLERLKDWGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSAPDFAAAWQ 121 (168)
T ss_dssp EEEEES-TT-EETTEEB-HHHHHHHHHHTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS---HHHHHH
T ss_pred eeeeecCCCcccccccchHHHHHHHHHHCCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCCCCHHHHHH
Confidence 466666654 336789999999999999876541 11222222233345666 66666644342
Q ss_pred ---------cCCCcEEEEcCCCCchhHHHHHHHHHHh-CCCCHHHHH
Q psy1264 83 ---------LSEQNISHFSLAGMSRSVTVTIAYIMSV-TSLNWKEAL 119 (209)
Q Consensus 83 ---------~~~~~VLVHC~~G~sRS~tvv~AYLm~~-~~~~~~~A~ 119 (209)
.+|++|+|||.+|+|||++|++++|+.. .+++.++|+
T Consensus 122 i~~eL~~~L~~g~~V~vHC~GGlGRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 122 ILEELAARLENGRKVLVHCRGGLGRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp HHHHHHHHHHTT--EEEE-SSSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred HHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence 6789999999999999999999998876 458998885
No 17
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=98.97 E-value=6.1e-10 Score=82.25 Aligned_cols=89 Identities=16% Similarity=0.208 Sum_probs=52.6
Q ss_pred ccceeCCeEEcCccCcCCHHHHHhCCCceEEEcccCCCcc-CCCC---cccCCCCCceEE-EcCCCCCc--cc---c---
Q psy1264 16 KRIVLPGLYVGNYRDSKDAVQLDRFNITHIVAIHDSARKI-HPVS---KTKASQPANHYQ-VDPRGGPD--QV---Y--- 82 (209)
Q Consensus 16 ~~~I~p~LylG~~~~a~~~~~L~~~gIt~Vinl~~~~~~~-~~~~---~~~~~~~~~~y~-I~~~D~~~--~~---~--- 82 (209)
+.+|.+.+++++.+...+++.|++.|+++|||+....+.. .+.. ...+...++.|. ||+....- .+ |
T Consensus 2 i~~i~~~~~vs~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~ 81 (110)
T PF04273_consen 2 IRQISDDLSVSGQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADA 81 (110)
T ss_dssp -EEEETTEEEECS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHH
T ss_pred CEecCCCeEECCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHH
Confidence 4689999999999999999999999999999998664421 1221 122334457788 88774321 11 1
Q ss_pred --cCCCcEEEEcCCCCchhHHHHHH
Q psy1264 83 --LSEQNISHFSLAGMSRSVTVTIA 105 (209)
Q Consensus 83 --~~~~~VLVHC~~G~sRS~tvv~A 105 (209)
...++||+||..|. ||+++.+.
T Consensus 82 l~~~~~Pvl~hC~sG~-Ra~~l~~l 105 (110)
T PF04273_consen 82 LESLPKPVLAHCRSGT-RASALWAL 105 (110)
T ss_dssp HHTTTTSEEEE-SCSH-HHHHHHHH
T ss_pred HHhCCCCEEEECCCCh-hHHHHHHH
Confidence 45689999999996 99776543
No 18
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=98.96 E-value=2.5e-09 Score=76.65 Aligned_cols=56 Identities=16% Similarity=0.043 Sum_probs=47.7
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHhC------CCCHHHHHHHHHhhCCCccCCHHHHHHHH
Q psy1264 85 EQNISHFSLAGMSRSVTVTIAYIMSVT------SLNWKEALKVVRVGRAIANPNNGFQKQLQ 140 (209)
Q Consensus 85 ~~~VLVHC~~G~sRS~tvv~AYLm~~~------~~~~~~A~~~vr~~Rp~i~pn~~f~~qL~ 140 (209)
+++|+|||.+|+|||++++++|++... ..++.+++..+|..||....+..+...+.
T Consensus 39 ~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~r~~~~~~~~q~~~~~ 100 (105)
T smart00012 39 SGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELRKQRPGMVQTFEQYLFLY 100 (105)
T ss_pred CCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhhhhhhCCcHHHHHHHH
Confidence 689999999999999999999988762 36888999999999999878776655543
No 19
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=98.96 E-value=2.5e-09 Score=76.65 Aligned_cols=56 Identities=16% Similarity=0.043 Sum_probs=47.7
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHhC------CCCHHHHHHHHHhhCCCccCCHHHHHHHH
Q psy1264 85 EQNISHFSLAGMSRSVTVTIAYIMSVT------SLNWKEALKVVRVGRAIANPNNGFQKQLQ 140 (209)
Q Consensus 85 ~~~VLVHC~~G~sRS~tvv~AYLm~~~------~~~~~~A~~~vr~~Rp~i~pn~~f~~qL~ 140 (209)
+++|+|||.+|+|||++++++|++... ..++.+++..+|..||....+..+...+.
T Consensus 39 ~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~r~~~~~~~~q~~~~~ 100 (105)
T smart00404 39 SGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELRKQRPGMVQTFEQYLFLY 100 (105)
T ss_pred CCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhhhhhhCCcHHHHHHHH
Confidence 689999999999999999999988762 36888999999999999878776655543
No 20
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=98.84 E-value=2.3e-08 Score=76.84 Aligned_cols=103 Identities=18% Similarity=0.213 Sum_probs=66.3
Q ss_pred HHHHHhCCCceEEEcccCCCccC-CCCcccCCCCCceEE-EcCCCCCccc-----------c----cCCCcEEEEcCCCC
Q psy1264 34 AVQLDRFNITHIVAIHDSARKIH-PVSKTKASQPANHYQ-VDPRGGPDQV-----------Y----LSEQNISHFSLAGM 96 (209)
Q Consensus 34 ~~~L~~~gIt~Vinl~~~~~~~~-~~~~~~~~~~~~~y~-I~~~D~~~~~-----------~----~~~~~VLVHC~~G~ 96 (209)
.++-.++|-+++|++.......+ +.......+-..++. |...|.+... | .+..+.||||.+|+
T Consensus 25 ae~~~rh~~t~mlsl~a~~t~~~~pa~~~~erhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~~apllIHC~aGI 104 (172)
T COG5350 25 AETAARHGPTHMLSLLAKGTYFHRPAVIAAERHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRFAPLLIHCYAGI 104 (172)
T ss_pred HHHHhhcCCceEEEeecccccccCccccchhhceeEeeccccCCCccccCCCHHHHHHHHHHHhcCccccceeeeecccc
Confidence 45567789999999987533222 111111111112222 3333332111 1 56678999999999
Q ss_pred chhHHHH-HHHHHHhCCCCHHHHHHHHHhhCCCccCCHHHH
Q psy1264 97 SRSVTVT-IAYIMSVTSLNWKEALKVVRVGRAIANPNNGFQ 136 (209)
Q Consensus 97 sRS~tvv-~AYLm~~~~~~~~~A~~~vr~~Rp~i~pn~~f~ 136 (209)
|||++++ +|-|.....|+-.+..+.++..+|.+.||+..+
T Consensus 105 SRStA~A~i~a~ala~~~de~ela~~Lra~sp~atPN~Rli 145 (172)
T COG5350 105 SRSTAAALIAALALAPDMDETELAERLRALSPYATPNPRLI 145 (172)
T ss_pred ccchHHHHHHHHhhccccChHHHHHHHHhcCcccCCChhHH
Confidence 9997766 334556679999999999999999999999543
No 21
>PLN02727 NAD kinase
Probab=98.75 E-value=1.5e-08 Score=96.91 Aligned_cols=96 Identities=14% Similarity=0.039 Sum_probs=70.5
Q ss_pred CeEEcCccCcCCHHHHHhCCCceEEEcccCCCccCCC---CcccCCCCCceEE-EcCCC--CCccc--------c--cCC
Q psy1264 22 GLYVGNYRDSKDAVQLDRFNITHIVAIHDSARKIHPV---SKTKASQPANHYQ-VDPRG--GPDQV--------Y--LSE 85 (209)
Q Consensus 22 ~LylG~~~~a~~~~~L~~~gIt~Vinl~~~~~~~~~~---~~~~~~~~~~~y~-I~~~D--~~~~~--------~--~~~ 85 (209)
.+|+++++...+.++|.++||++|||+..+.+...+. ....+...++.|+ ||+.+ .+... + ...
T Consensus 262 ~~~rsgQpspe~la~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~~apt~EqVe~fa~~l~~slp 341 (986)
T PLN02727 262 AFWRGGQVTEEGLKWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVRTAPSAEQVEKFASLVSDSSK 341 (986)
T ss_pred eEEEeCCCCHHHHHHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHHHHHHhhcC
Confidence 5899999999999999999999999998766521111 1112223457777 88754 33333 2 247
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHhCCCCHHH
Q psy1264 86 QNISHFSLAGMSRSVTVTIAYIMSVTSLNWKE 117 (209)
Q Consensus 86 ~~VLVHC~~G~sRS~tvv~AYLm~~~~~~~~~ 117 (209)
++||+||+.|..|+++++++|+.+..+...+.
T Consensus 342 kPVLvHCKSGarRAGamvA~yl~~~~~~~~~~ 373 (986)
T PLN02727 342 KPIYLHSKEGVWRTSAMVSRWKQYMTRSAERL 373 (986)
T ss_pred CCEEEECCCCCchHHHHHHHHHHHHcccchhh
Confidence 89999999999999999999999886654333
No 22
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=98.72 E-value=2.8e-08 Score=82.03 Aligned_cols=56 Identities=18% Similarity=0.061 Sum_probs=48.7
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHh-----CCCCHHHHHHHHHhhCCCccCCHHHHHHHH
Q psy1264 85 EQNISHFSLAGMSRSVTVTIAYIMSV-----TSLNWKEALKVVRVGRAIANPNNGFQKQLQ 140 (209)
Q Consensus 85 ~~~VLVHC~~G~sRS~tvv~AYLm~~-----~~~~~~~A~~~vr~~Rp~i~pn~~f~~qL~ 140 (209)
+++|+|||.+|+|||+++++++++.. ...++.+|+..||+.|+.+..+..++..+.
T Consensus 166 ~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~iR~~R~~~v~~~~Qy~f~~ 226 (231)
T cd00047 166 SGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKELRSQRPGMVQTEEQYIFLY 226 (231)
T ss_pred CCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHHHHhccccccCCHHHHHHHH
Confidence 67999999999999999999987654 368999999999999999888887766554
No 23
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=98.63 E-value=7.7e-08 Score=80.82 Aligned_cols=56 Identities=20% Similarity=0.077 Sum_probs=48.7
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHh-----CCCCHHHHHHHHHhhCCCccCCHHHHHHHH
Q psy1264 85 EQNISHFSLAGMSRSVTVTIAYIMSV-----TSLNWKEALKVVRVGRAIANPNNGFQKQLQ 140 (209)
Q Consensus 85 ~~~VLVHC~~G~sRS~tvv~AYLm~~-----~~~~~~~A~~~vr~~Rp~i~pn~~f~~qL~ 140 (209)
+++|+|||.+|+|||+++++++++.. ...++.+++..||+.|+.+..+..++..+.
T Consensus 193 ~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR~~R~~~v~~~~Qy~f~~ 253 (258)
T smart00194 193 TGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELRSQRPGMVQTEEQYIFLY 253 (258)
T ss_pred CCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHHhccccccCCHHHHHHHH
Confidence 68999999999999999999987643 468999999999999999888887766554
No 24
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=98.58 E-value=1.4e-07 Score=74.15 Aligned_cols=98 Identities=17% Similarity=0.254 Sum_probs=52.6
Q ss_pred ceeCC-eEEcCccC---cCCHHHHHhCCCceEEEcccCCCcc-CCCCcccCCCCCceEE-EcCCCCCccc----------
Q psy1264 18 IVLPG-LYVGNYRD---SKDAVQLDRFNITHIVAIHDSARKI-HPVSKTKASQPANHYQ-VDPRGGPDQV---------- 81 (209)
Q Consensus 18 ~I~p~-LylG~~~~---a~~~~~L~~~gIt~Vinl~~~~~~~-~~~~~~~~~~~~~~y~-I~~~D~~~~~---------- 81 (209)
.|.+| ||-++... ..+.+.|.++||++||+|....+.. .|+. ...++++. +|+.+.....
T Consensus 15 ~ir~g~lyRS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~----~~~g~~~~~~p~~~~~~~~~~~~~~~~~~ 90 (164)
T PF13350_consen 15 RIRPGRLYRSGNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDP----LIDGVQYVHIPIFGDDASSPDKLAELLQS 90 (164)
T ss_dssp TS-TTSEEEES--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS--------TT-EEEE--SS-S-TTH----------
T ss_pred eecCCcEEecCCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCC----CcCCceeeeeccccccccccccccccccc
Confidence 67888 88887664 3477899999999999998765411 1211 11235666 7766554331
Q ss_pred -----------c-------------------cCCCcEEEEcCCCCchhHHHHHHHHHHhCCCCHHHHHH
Q psy1264 82 -----------Y-------------------LSEQNISHFSLAGMSRSVTVTIAYIMSVTSLNWKEALK 120 (209)
Q Consensus 82 -----------~-------------------~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~~~~~A~~ 120 (209)
| ...++|||||.+|..||+.+++..| .--|.+.++.++
T Consensus 91 ~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~l~~~~~p~l~HC~aGKDRTG~~~alll-~~lGV~~~~I~~ 158 (164)
T PF13350_consen 91 SADAPRGMLEFYREMLESYAEAYRKIFELLADAPGPVLFHCTAGKDRTGVVAALLL-SLLGVPDEDIIA 158 (164)
T ss_dssp HHHHHHHHHHHHHHGGGSTHHHHHHHHHHHH-TT--EEEE-SSSSSHHHHHHHHHH-HHTT--HHHHHH
T ss_pred ccchhhHHHHHHHHHHHhhhHHHHHHHHHhccCCCcEEEECCCCCccHHHHHHHHH-HHcCCCHHHHHH
Confidence 0 2447999999999999976666555 445998887765
No 25
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.56 E-value=1.6e-07 Score=69.41 Aligned_cols=107 Identities=14% Similarity=0.134 Sum_probs=76.5
Q ss_pred ccceeCCeEEcCccCcCCHHHHHhCCCceEEEcccCCCc-cCCCC---cccCCCCCceEE-EcCCCC-Cc-cc---c---
Q psy1264 16 KRIVLPGLYVGNYRDSKDAVQLDRFNITHIVAIHDSARK-IHPVS---KTKASQPANHYQ-VDPRGG-PD-QV---Y--- 82 (209)
Q Consensus 16 ~~~I~p~LylG~~~~a~~~~~L~~~gIt~Vinl~~~~~~-~~~~~---~~~~~~~~~~y~-I~~~D~-~~-~~---~--- 82 (209)
+.+|.+.|.|++.....|...++++|++.|||.....+. .-|+. ...+...+..|. ||+... .. .+ +
T Consensus 3 i~~I~d~lsVsgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~~dV~~f~~A 82 (130)
T COG3453 3 IRRINDRLSVSGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGGGITEADVEAFQRA 82 (130)
T ss_pred ceecccceeecCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCCCCCHHHHHHHHHH
Confidence 468999999999999999999999999999999765542 22221 122334556777 887753 22 22 2
Q ss_pred --cCCCcEEEEcCCCCchhHHHHHHHHHHhCCCCHHHHHHHHHh
Q psy1264 83 --LSEQNISHFSLAGMSRSVTVTIAYIMSVTSLNWKEALKVVRV 124 (209)
Q Consensus 83 --~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~~~~~A~~~vr~ 124 (209)
..+++||.||+.| .||.++-..-- ...||+.+++..+=++
T Consensus 83 l~eaegPVlayCrsG-tRs~~ly~~~~-~~~gm~~de~~a~g~a 124 (130)
T COG3453 83 LDEAEGPVLAYCRSG-TRSLNLYGLGE-LDGGMSRDEIEALGQA 124 (130)
T ss_pred HHHhCCCEEeeecCC-chHHHHHHHHH-HhcCCCHHHHHHHHHh
Confidence 5789999999999 58855543333 4469999988776554
No 26
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=98.41 E-value=8.2e-07 Score=80.48 Aligned_cols=60 Identities=18% Similarity=0.143 Sum_probs=53.2
Q ss_pred EEEEcCCCCchhHHHHHHHHHHhCC-CCHHHHHHHHHhhCCC-ccCCHHHHHHHHHHHHHHH
Q psy1264 88 ISHFSLAGMSRSVTVTIAYIMSVTS-LNWKEALKVVRVGRAI-ANPNNGFQKQLQDFECFRL 147 (209)
Q Consensus 88 VLVHC~~G~sRS~tvv~AYLm~~~~-~~~~~A~~~vr~~Rp~-i~pn~~f~~qL~~~e~~~l 147 (209)
.+|||.+|+|||++++++|+|...+ .++++.+.-+|..|+. +--+..++..|.+....++
T Consensus 469 PVVHCSAGVGRTGTFIAi~llk~~~~~sle~IV~dlR~qRng~MVQt~eQy~~l~~~~~~~~ 530 (535)
T PRK15375 469 PMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRADFRNSRNNRMLEDASQFVQLKAMQAQLL 530 (535)
T ss_pred ceEEcCCCCchHHHHHHHHHHhccccCCHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHh
Confidence 4799999999999999999997544 6899999999999998 7789999999998887654
No 27
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=98.24 E-value=3e-06 Score=69.28 Aligned_cols=58 Identities=19% Similarity=0.043 Sum_probs=49.4
Q ss_pred CCCcEEEEcCCCCchhHHHHHHHHHHh-----CCCCHHHHHHHHHhhCCCccCCHHHHHHHHH
Q psy1264 84 SEQNISHFSLAGMSRSVTVTIAYIMSV-----TSLNWKEALKVVRVGRAIANPNNGFQKQLQD 141 (209)
Q Consensus 84 ~~~~VLVHC~~G~sRS~tvv~AYLm~~-----~~~~~~~A~~~vr~~Rp~i~pn~~f~~qL~~ 141 (209)
..++|+|||..|.|||++++++.++.. ...+..+++..||+.|+.+..+..++..+..
T Consensus 169 ~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~i~~~~qy~f~~~ 231 (235)
T PF00102_consen 169 PNGPIVVHCSDGVGRSGTFCAIDILIEQLKKEGEVDVFEIVKKLRQQRPGAIQSPEQYRFCYM 231 (235)
T ss_dssp TSSEEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTTSTTSSSSHHHHHHHHH
T ss_pred CccceEeecccccccccccccchhhccccccccchhhHHHHHHHHhhCCCccCCHHHHHHHHH
Confidence 468999999999999999999987653 4579999999999999999889877666543
No 28
>KOG1572|consensus
Probab=98.22 E-value=5.5e-06 Score=68.21 Aligned_cols=108 Identities=13% Similarity=0.071 Sum_probs=76.4
Q ss_pred CCCccceeCCeEEcCccCcCCHHHHHhCCCceEEEcccCCCccCCCCcccCCCCCceEEEcCCCCC------cccc----
Q psy1264 13 KDVKRIVLPGLYVGNYRDSKDAVQLDRFNITHIVAIHDSARKIHPVSKTKASQPANHYQVDPRGGP------DQVY---- 82 (209)
Q Consensus 13 ~~~~~~I~p~LylG~~~~a~~~~~L~~~gIt~Vinl~~~~~~~~~~~~~~~~~~~~~y~I~~~D~~------~~~~---- 82 (209)
....+-|.++||-++++...+..+|+.++.+.||+|+.+..+. +....-....+..|.|.++..- ..+.
T Consensus 57 PlnFs~V~~~lyRSg~P~~~NfsFL~~L~LksIisL~pE~yp~-~nl~f~~~~~Ik~~~i~ie~~k~~~k~P~~~~~~~~ 135 (249)
T KOG1572|consen 57 PLNFSMVDNGLYRSGFPRPENFSFLKTLHLKSIISLCPEPYPE-ENLNFLESNGIKLYQIGIEGEKDNKKEPFVNIPDHS 135 (249)
T ss_pred CccccccccceeecCCCCccchHHHHHhhhheEEEecCCCCCh-HHHHHHHhcCceEEEEecccccccccCCCCCChHHH
Confidence 3456778889999999999999999999999999999885211 1111111222233335544332 1221
Q ss_pred ----------cCCCcEEEEcCCCCchhHHHHHHHHHHhCCCCHHHHHHHH
Q psy1264 83 ----------LSEQNISHFSLAGMSRSVTVTIAYIMSVTSLNWKEALKVV 122 (209)
Q Consensus 83 ----------~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~~~~~A~~~v 122 (209)
..+.++||||..|..|+++|+.+.- +.++|++--.+..-
T Consensus 136 i~~~l~~lld~~N~P~Lihc~rGkhRtg~lVgclR-klq~W~lssil~Ey 184 (249)
T KOG1572|consen 136 IRKALKVLLDKRNYPILIHCKRGKHRTGCLVGCLR-KLQNWSLSSILDEY 184 (249)
T ss_pred HHHHHHHHhcccCCceEEecCCCCcchhhhHHHHH-HHhccchhHHHHHH
Confidence 5678999999999999999998866 66789988776643
No 29
>KOG2283|consensus
Probab=98.21 E-value=4.1e-06 Score=75.41 Aligned_cols=124 Identities=11% Similarity=0.040 Sum_probs=80.0
Q ss_pred CccceeCCeEEcCccCcCCHHHHHhCCCc--------------eEEEcccCCCccCCCCcccCCCCCceEEEcCCCCCcc
Q psy1264 15 VKRIVLPGLYVGNYRDSKDAVQLDRFNIT--------------HIVAIHDSARKIHPVSKTKASQPANHYQVDPRGGPDQ 80 (209)
Q Consensus 15 ~~~~I~p~LylG~~~~a~~~~~L~~~gIt--------------~Vinl~~~~~~~~~~~~~~~~~~~~~y~I~~~D~~~~ 80 (209)
.++=|+++|.+-++++..... +-++.+. .|.||+.+. .+.... ..+....++.+|....
T Consensus 14 DltYIT~rIIamsfPa~~~es-~yRN~l~dV~~fL~s~H~~~y~vyNL~~er--~yd~~~----f~g~V~~~~~~Dh~~P 86 (434)
T KOG2283|consen 14 DLTYITSRIIAMSFPAEGIES-LYRNNLEDVVLFLDSKHKDHYKVYNLSSER--LYDPSR----FHGRVARFGFDDHNPP 86 (434)
T ss_pred cceeeeeeEEEEeCCCCcchh-hhcCCHHHHHHHHhhccCCceEEEecCccc--cCCccc----cccceeecCCCCCCCC
Confidence 466788888777777544322 3334333 466776521 111110 0112222455554333
Q ss_pred cc----------------cCCCcEEEEcCCCCchhHHHHHHHHHHhCCCC-HHHHHHHHHhhC---C--CccCCHHHHHH
Q psy1264 81 VY----------------LSEQNISHFSLAGMSRSVTVTIAYIMSVTSLN-WKEALKVVRVGR---A--IANPNNGFQKQ 138 (209)
Q Consensus 81 ~~----------------~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~~-~~~A~~~vr~~R---p--~i~pn~~f~~q 138 (209)
.+ .....|.|||.+|.+||+++++||||...-.. .++|+.+.-.+| . ....-+.+.+.
T Consensus 87 ~L~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR~~~~~~~~~~~PSq~RY 166 (434)
T KOG2283|consen 87 PLELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKRFDEGKSKGVTIPSQRRY 166 (434)
T ss_pred cHHHHHHHHHCHHHHHhcCccceEEEEccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhhccccccCCccCchhhHH
Confidence 32 33456999999999999999999999985554 899999999999 3 22346788899
Q ss_pred HHHHHHH
Q psy1264 139 LQDFECF 145 (209)
Q Consensus 139 L~~~e~~ 145 (209)
+..|+..
T Consensus 167 v~Y~~~~ 173 (434)
T KOG2283|consen 167 VGYFSRV 173 (434)
T ss_pred HHHHHHH
Confidence 9999884
No 30
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=98.15 E-value=5.9e-06 Score=71.38 Aligned_cols=54 Identities=15% Similarity=-0.004 Sum_probs=43.7
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHh-----CCCCHHHHHHHHHhhCCCccCCHHHHHH
Q psy1264 85 EQNISHFSLAGMSRSVTVTIAYIMSV-----TSLNWKEALKVVRVGRAIANPNNGFQKQ 138 (209)
Q Consensus 85 ~~~VLVHC~~G~sRS~tvv~AYLm~~-----~~~~~~~A~~~vr~~Rp~i~pn~~f~~q 138 (209)
.++|+|||.+|+||||++++..++.. ...++-+++..+|+.|+.+..+..++..
T Consensus 229 ~~PIvVHCsaGvGRTGtF~aid~~i~~~~~~~~v~v~~~V~~lR~qR~~~Vqt~~QY~F 287 (303)
T PHA02742 229 EPPILVHCSAGLDRAGAFCAIDICISKYNERAIIPLLSIVRDLRKQRHNCLSLPQQYIF 287 (303)
T ss_pred CCCeEEECCCCCchhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccccCCHHHHHH
Confidence 37899999999999999987765442 3567889999999999998778765543
No 31
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=98.15 E-value=9.4e-06 Score=70.42 Aligned_cols=54 Identities=11% Similarity=-0.019 Sum_probs=45.9
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHH-----hCCCCHHHHHHHHHhhCCCccCCHHHHHHH
Q psy1264 86 QNISHFSLAGMSRSVTVTIAYIMS-----VTSLNWKEALKVVRVGRAIANPNNGFQKQL 139 (209)
Q Consensus 86 ~~VLVHC~~G~sRS~tvv~AYLm~-----~~~~~~~~A~~~vr~~Rp~i~pn~~f~~qL 139 (209)
++|+|||.+|+||||++++.-++. ....+..+++..+|..|+.+..+..++..+
T Consensus 230 ~PIvVHCsaGvGRtGtfcaidi~i~~l~~~~~v~v~~~V~~lR~qR~~~Vqt~~QY~F~ 288 (312)
T PHA02747 230 CPIVVHCSDGVGKTGIFCAVDICLNQLVKRKAICLAKTAEKIREQRHAGIMNFDDYLFI 288 (312)
T ss_pred CCEEEEecCCCcchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHhccccccCCHHHHHHH
Confidence 689999999999999999876433 256789999999999999988888777666
No 32
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=98.13 E-value=1.2e-05 Score=70.09 Aligned_cols=55 Identities=15% Similarity=-0.070 Sum_probs=45.5
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHH-----hCCCCHHHHHHHHHhhCCCccCCHHHHHHHH
Q psy1264 86 QNISHFSLAGMSRSVTVTIAYIMS-----VTSLNWKEALKVVRVGRAIANPNNGFQKQLQ 140 (209)
Q Consensus 86 ~~VLVHC~~G~sRS~tvv~AYLm~-----~~~~~~~~A~~~vr~~Rp~i~pn~~f~~qL~ 140 (209)
++|+|||.+|+||||++++.-++. ....+..+++..+|..|+.+..+..++..+-
T Consensus 248 ~PIvVHCsaGvGRTGtfcaid~~l~~l~~~~~vdv~~~V~~lR~qR~~~Vqt~~QY~F~y 307 (323)
T PHA02746 248 GPIVVHCSAGIGRAGTFCAIDNALEQLEKEKEVCLGEIVLKIRKQRHSSVFLPEQYAFCY 307 (323)
T ss_pred CCEEEEcCCCCCcchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhcccccCCCHHHHHHHH
Confidence 689999999999999998865432 2568899999999999999888887665554
No 33
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=98.07 E-value=2.4e-05 Score=65.79 Aligned_cols=49 Identities=16% Similarity=0.034 Sum_probs=41.3
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHhCCCCHHHHHHHHHhhCCCccCCH
Q psy1264 85 EQNISHFSLAGMSRSVTVTIAYIMSVTSLNWKEALKVVRVGRAIANPNN 133 (209)
Q Consensus 85 ~~~VLVHC~~G~sRS~tvv~AYLm~~~~~~~~~A~~~vr~~Rp~i~pn~ 133 (209)
+++||+||.+|..|+|.+++.|++...++....+-+++...++......
T Consensus 136 ~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~~~~~ 184 (249)
T COG2365 136 NGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGEPERR 184 (249)
T ss_pred cCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccchhhH
Confidence 4999999999999999999999999877777688888888877654444
No 34
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=98.06 E-value=1.2e-05 Score=69.39 Aligned_cols=55 Identities=20% Similarity=0.007 Sum_probs=44.8
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHH-----hCCCCHHHHHHHHHhhCCCccCCHHHHHHH
Q psy1264 85 EQNISHFSLAGMSRSVTVTIAYIMS-----VTSLNWKEALKVVRVGRAIANPNNGFQKQL 139 (209)
Q Consensus 85 ~~~VLVHC~~G~sRS~tvv~AYLm~-----~~~~~~~~A~~~vr~~Rp~i~pn~~f~~qL 139 (209)
.++|+|||.+|+||||+.++.-++. ....++.+++..+|..|+..-.+..++..+
T Consensus 221 ~~PIVVHCSaGvGRTGtFcaiDi~l~~~~~~~~vdi~~~V~~lR~qR~~~Vqt~~QY~F~ 280 (298)
T PHA02740 221 IAPIIIDCIDGISSSAVFCVFDICATEFDKTGMLSIANALKKVRQKKYGCMNCLDDYVFC 280 (298)
T ss_pred CCCEEEECCCCCchhHHHHHHHHHHHHHHhcCcccHHHHHHHHHhhCccccCCHHHHHHH
Confidence 3689999999999999998776543 345789999999999999987887665543
No 35
>PHA02738 hypothetical protein; Provisional
Probab=97.92 E-value=2.4e-05 Score=68.09 Aligned_cols=55 Identities=15% Similarity=-0.004 Sum_probs=44.2
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHH-H----hCCCCHHHHHHHHHhhCCCccCCHHHHHHH
Q psy1264 85 EQNISHFSLAGMSRSVTVTIAYIM-S----VTSLNWKEALKVVRVGRAIANPNNGFQKQL 139 (209)
Q Consensus 85 ~~~VLVHC~~G~sRS~tvv~AYLm-~----~~~~~~~~A~~~vr~~Rp~i~pn~~f~~qL 139 (209)
.++|+|||.+|+||||+.++.-++ . ....++.+++..||+.|+....+..++..+
T Consensus 227 ~~PIVVHCs~GiGRtGtFcaidi~i~~~~~~~~vdv~~~V~~lR~qR~~~vqt~~QY~F~ 286 (320)
T PHA02738 227 PPPIVVHCNAGLGRTPCYCVVDISISRFDACATVSIPSIVSSIRNQRYYSLFIPFQYFFC 286 (320)
T ss_pred CCCeEEEcCCCCChhhhhhHHHHHHHHHHhcCCcCHHHHHHHHHhhhhhccCCHHHHHHH
Confidence 368999999999999998766533 2 245789999999999999988888776543
No 36
>KOG0790|consensus
Probab=97.84 E-value=6.4e-05 Score=67.05 Aligned_cols=106 Identities=14% Similarity=0.225 Sum_probs=66.7
Q ss_pred CHHHHHhCCCceEEEcccCCCccC-----------CCCcccCCCCCceEE-EcCCCCCccc-----c-----------cC
Q psy1264 33 DAVQLDRFNITHIVAIHDSARKIH-----------PVSKTKASQPANHYQ-VDPRGGPDQV-----Y-----------LS 84 (209)
Q Consensus 33 ~~~~L~~~gIt~Vinl~~~~~~~~-----------~~~~~~~~~~~~~y~-I~~~D~~~~~-----~-----------~~ 84 (209)
+...++.+|+-.|-|+.+..-.-+ .+. .....-..+|+ +|+-..|... | ..
T Consensus 372 ee~~~e~~G~~~v~~v~E~~t~dY~LR~l~vs~~~~g~-~~R~I~~yh~~tWPDHGvP~dPg~vLnFLe~V~~rq~~l~~ 450 (600)
T KOG0790|consen 372 EEGALEEYGVMRVRNVKESDTHDYTLRELKVSKLGNGN-LEREIWHYHYLTWPDHGVPSDPGGVLNFLEEVNHRQESLMD 450 (600)
T ss_pred cccchhhcCceEEEeccccccccceehheeeccccCCc-chhhhhhhheeecccCCCcCCccHHHHHHHHhhhhhccccc
Confidence 445677888888888866432100 000 00011123344 5555555444 1 34
Q ss_pred CCcEEEEcCCCCchhHHHHHH-HHHH---h----CCCCHHHHHHHHHhhCCCccCCHHHHHHH
Q psy1264 85 EQNISHFSLAGMSRSVTVTIA-YIMS---V----TSLNWKEALKVVRVGRAIANPNNGFQKQL 139 (209)
Q Consensus 85 ~~~VLVHC~~G~sRS~tvv~A-YLm~---~----~~~~~~~A~~~vr~~Rp~i~pn~~f~~qL 139 (209)
-|+|.|||.|||||++|+++. .||. . ..++....++.||+.|+.+-....+++.+
T Consensus 451 AgpIvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~ktIqmVRsqRSGmVQTEaQYkFi 513 (600)
T KOG0790|consen 451 AGPIVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQKTIQMVRSQRSGMVQTEAQYKFI 513 (600)
T ss_pred cCcEEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHHHHHHHHHHhcchhhhHHhHHHH
Confidence 579999999999999997754 4443 2 45678899999999999877776665543
No 37
>KOG0792|consensus
Probab=97.68 E-value=8.8e-05 Score=71.97 Aligned_cols=56 Identities=14% Similarity=0.175 Sum_probs=46.1
Q ss_pred CCcEEEEcCCCCchhHHHHHH----HHHHh-CCCCHHHHHHHHHhhCCCccCCHHHHHHHH
Q psy1264 85 EQNISHFSLAGMSRSVTVTIA----YIMSV-TSLNWKEALKVVRVGRAIANPNNGFQKQLQ 140 (209)
Q Consensus 85 ~~~VLVHC~~G~sRS~tvv~A----YLm~~-~~~~~~~A~~~vr~~Rp~i~pn~~f~~qL~ 140 (209)
+.+|+|||.+|+||||+++++ ||+.. .....-+.++.+|..|-.+.++..++..+-
T Consensus 1063 ~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vdi~divr~mR~QR~~mVQT~~QYkFVy 1123 (1144)
T KOG0792|consen 1063 NPPILVHCSAGIGRTGVLILMETALCLLEHNEPVDILDIVRTMRDQRAMMVQTLSQYKFVY 1123 (1144)
T ss_pred CCCeEEEccCCCCcceehHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhccchHHhhHHH
Confidence 458999999999999998855 44444 456788999999999999999998877653
No 38
>KOG2386|consensus
Probab=97.49 E-value=4.8e-05 Score=67.32 Aligned_cols=61 Identities=20% Similarity=0.218 Sum_probs=50.6
Q ss_pred cCCCcEEEEcCCCCchhHHHHHHHHHHhCCCCHHHHHHHHHhhCCCccCCHHHHHHHHHHH
Q psy1264 83 LSEQNISHFSLAGMSRSVTVTIAYIMSVTSLNWKEALKVVRVGRAIANPNNGFQKQLQDFE 143 (209)
Q Consensus 83 ~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~~~~~A~~~vr~~Rp~i~pn~~f~~qL~~~e 143 (209)
..+.=|+|||.+|++|++-++++|||...+|+..+|++.+...||...-....+..|...+
T Consensus 122 ~~~~LI~vhcthG~NrtgyLI~~yL~~~~~~s~~~aik~f~~~r~~gi~k~dyi~~L~~~~ 182 (393)
T KOG2386|consen 122 LDDELIGVHCTHGLNRTGYLICAYLADVGGYSSSEAIKRFADARPPGIEKQDYIDALYSRY 182 (393)
T ss_pred CCCCEEEEeCCCcccccceeeeeeeeeccCccHHHHHHHHHHhCCCccCchHHHHHHhhcc
Confidence 3456699999999999999999999999999999999999999997545555555555443
No 39
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.38 E-value=0.00018 Score=60.32 Aligned_cols=57 Identities=18% Similarity=0.064 Sum_probs=36.5
Q ss_pred CCCcEEEEcCCCCchhHHHHHHH-HHHhCCCC-------------HHHHHHHHHhhCCCccCCHHHHHHHH
Q psy1264 84 SEQNISHFSLAGMSRSVTVTIAY-IMSVTSLN-------------WKEALKVVRVGRAIANPNNGFQKQLQ 140 (209)
Q Consensus 84 ~~~~VLVHC~~G~sRS~tvv~AY-Lm~~~~~~-------------~~~A~~~vr~~Rp~i~pn~~f~~qL~ 140 (209)
..++++|||.||+||+||.++.- |+....-+ ..+.+..+|+.|-.+-.|..+...|-
T Consensus 217 ~t~piiVHCSAGvGRTGTFIalD~ll~~~~~~~~~t~~~~~t~D~if~iV~~LRsQRmkmVQn~~Qf~flY 287 (302)
T COG5599 217 RTGPIIVHCSAGVGRTGTFIALDILLRMPNDTLNHTDTWEDTQDLIFQIVLSLRSQRMKMVQNKTQFKFLY 287 (302)
T ss_pred CCCCEEEEeccCCCCcceeeeHHHHHhccccccCCCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 67899999999999999988775 44432221 12345556666655555554444443
No 40
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=97.33 E-value=0.0029 Score=57.47 Aligned_cols=120 Identities=14% Similarity=0.159 Sum_probs=75.9
Q ss_pred cceeCCeEEcCccCcCCH----HHHHhCCCceEEEcccCCCccCCCCcccCCCCCceEE-EcCCCCCc--ccc-------
Q psy1264 17 RIVLPGLYVGNYRDSKDA----VQLDRFNITHIVAIHDSARKIHPVSKTKASQPANHYQ-VDPRGGPD--QVY------- 82 (209)
Q Consensus 17 ~~I~p~LylG~~~~a~~~----~~L~~~gIt~Vinl~~~~~~~~~~~~~~~~~~~~~y~-I~~~D~~~--~~~------- 82 (209)
..+.++||+|.....-.. ..-.......||++.......... .....++ +++...-. .++
T Consensus 290 ~~~~~~i~ig~~~~~l~~~~~~~~~~~~~~~~vI~~s~~~~~~~~~------~~~~~~L~l~i~~~K~gs~~LR~~LP~i 363 (451)
T PF04179_consen 290 DPGTTGIYIGKISSNLAISKAQLPDLESEFDCVINCSESPTPKESW------PKSPKYLHLPIPSSKKGSRDLRKALPKI 363 (451)
T ss_pred ccCCCCeEEeccCCccccchhhccccCCCcCEEEEcCCCccccccc------CCCceEEeCcCCCCcccHHHHHHHHHHH
Confidence 345778999998762111 112346788999998765321111 1113444 66654422 121
Q ss_pred --------c--CCCcEEEEcCCCCchhHHHHHHHHHHhCCCC----------------HHHHHHHHHhhCCCccCCHHHH
Q psy1264 83 --------L--SEQNISHFSLAGMSRSVTVTIAYIMSVTSLN----------------WKEALKVVRVGRAIANPNNGFQ 136 (209)
Q Consensus 83 --------~--~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~~----------------~~~A~~~vr~~Rp~i~pn~~f~ 136 (209)
. .+.+|||+|..|...|+.|++|.|+..++.. .+.-+.+|-+.+|.++|+.+..
T Consensus 364 ~~fv~~~L~~~~~~~iLV~C~sGkDlSVgVaLaILc~~Fd~~g~~~~~~~~~~itK~~IR~rL~~I~~~~p~aNPSRaTL 443 (451)
T PF04179_consen 364 CSFVRSHLSSDPGKPILVCCDSGKDLSVGVALAILCKLFDDDGNFRDSFERPSITKDDIRQRLAWIISSRPDANPSRATL 443 (451)
T ss_pred HHHHHHHhcccCCCcEEEEcCCcchHHHHHHHHHHHHhcCcccCcccccccCCCCHHHHHHHHHHHHHhCCCCCCCHHHH
Confidence 2 3789999999999999999999999986543 2344566666677777777776
Q ss_pred HHHHHH
Q psy1264 137 KQLQDF 142 (209)
Q Consensus 137 ~qL~~~ 142 (209)
+++-.|
T Consensus 444 qsVNsF 449 (451)
T PF04179_consen 444 QSVNSF 449 (451)
T ss_pred HHHHHh
Confidence 666554
No 41
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=97.28 E-value=0.00036 Score=54.12 Aligned_cols=45 Identities=13% Similarity=0.174 Sum_probs=30.1
Q ss_pred CCCceEE-EcCCCCCccc------c-------cCCCcEEEEcCCCCchhHHHHHHHHHH
Q psy1264 65 QPANHYQ-VDPRGGPDQV------Y-------LSEQNISHFSLAGMSRSVTVTIAYIMS 109 (209)
Q Consensus 65 ~~~~~y~-I~~~D~~~~~------~-------~~~~~VLVHC~~G~sRS~tvv~AYLm~ 109 (209)
..+..|. ||+.|...+. | ..+..+.+||.+|.|||.+..+.|.|.
T Consensus 90 ~~g~~Y~Ripitd~~~P~~~~iD~fi~~v~~~p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 90 GNGLRYYRIPITDHQAPDPEDIDAFINFVKSLPKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp HTT-EEEEEEE-TTS---HHHHHHHHHHHHTS-TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred cCCceEEEEeCCCcCCCCHHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3568899 9999874333 1 456679999999999999988888664
No 42
>KOG0789|consensus
Probab=97.24 E-value=0.00059 Score=60.82 Aligned_cols=55 Identities=18% Similarity=0.084 Sum_probs=41.7
Q ss_pred CCcEEEEcCCCCchhHHHHHHH-HHHh--C---CCCHHHHHHHHHhhCCCccCCHHHHHHH
Q psy1264 85 EQNISHFSLAGMSRSVTVTIAY-IMSV--T---SLNWKEALKVVRVGRAIANPNNGFQKQL 139 (209)
Q Consensus 85 ~~~VLVHC~~G~sRS~tvv~AY-Lm~~--~---~~~~~~A~~~vr~~Rp~i~pn~~f~~qL 139 (209)
.+++.|||.+|+|||+|+++.- .+.. . .....+.+..+|..|+.+..+..|+..+
T Consensus 299 ~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~iR~qR~~~vqt~~Qy~f~ 359 (415)
T KOG0789|consen 299 QEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREIRYQRPGAVQSPLQYLFI 359 (415)
T ss_pred CCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhcccchhHHHHH
Confidence 5799999999999999999654 3332 2 2458888889999999887777655443
No 43
>KOG0791|consensus
Probab=96.86 E-value=0.0034 Score=54.98 Aligned_cols=60 Identities=13% Similarity=0.071 Sum_probs=45.8
Q ss_pred CCCcEEEEcCCCCchhHHHHHHH-HHHhCC----CCHHHHHHHHHhhCCCccCCHHHHHHHHHHH
Q psy1264 84 SEQNISHFSLAGMSRSVTVTIAY-IMSVTS----LNWKEALKVVRVGRAIANPNNGFQKQLQDFE 143 (209)
Q Consensus 84 ~~~~VLVHC~~G~sRS~tvv~AY-Lm~~~~----~~~~~A~~~vr~~Rp~i~pn~~f~~qL~~~e 143 (209)
..++++|||.+|+|||+|.++.- |++..+ .+.-..+..+|+.|+.+.++..++-.|...=
T Consensus 286 ~~~p~iVhCSAGVgRTGTFiald~LLqq~~~~~~vdi~~iv~~lR~~R~~mVqte~Qyvfl~~c~ 350 (374)
T KOG0791|consen 286 SKGPTIVHCSAGVGRTGTFIALDRLLQQIDSEETVDIFGVVLELRSARMLMVQTEDQYVFLHQCV 350 (374)
T ss_pred CCCceeEEeecccccccchHhHHHHHHHhcccccccHHHHHHHhhhccccccchHHHHHHHHHHH
Confidence 45789999999999999998775 444322 3455677788889999999987777776553
No 44
>KOG0793|consensus
Probab=95.77 E-value=0.013 Score=55.29 Aligned_cols=71 Identities=14% Similarity=0.146 Sum_probs=49.4
Q ss_pred CceEE-EcCCCCCccc-----c-------c--CCCcEEEEcCCCCchhHHHHHHHHH----Hh--CCCCHHHHHHHHHhh
Q psy1264 67 ANHYQ-VDPRGGPDQV-----Y-------L--SEQNISHFSLAGMSRSVTVTIAYIM----SV--TSLNWKEALKVVRVG 125 (209)
Q Consensus 67 ~~~y~-I~~~D~~~~~-----~-------~--~~~~VLVHC~~G~sRS~tvv~AYLm----~~--~~~~~~~A~~~vr~~ 125 (209)
-+||+ +|....|... | . ...+|+|||..|-|||++-++.=++ .+ ...+....++++|..
T Consensus 894 QFHfLSWp~egvPasarslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDIaATlEHlRDQ 973 (1004)
T KOG0793|consen 894 QFHFLSWPDEGVPASARSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDIAATLEHLRDQ 973 (1004)
T ss_pred eeeeecccccCCccchHHHHHHHHHhhhhccCCCCceEEEccCCCCccceeeeHHHHHHHHhccchhhhHHHHHHHHhhc
Confidence 37888 8877777655 2 2 2357999999999999986544322 22 345677789999999
Q ss_pred CCCccCCHHHHH
Q psy1264 126 RAIANPNNGFQK 137 (209)
Q Consensus 126 Rp~i~pn~~f~~ 137 (209)
||.+--...+.+
T Consensus 974 R~GmVaTkdQFe 985 (1004)
T KOG0793|consen 974 RPGMVATKDQFE 985 (1004)
T ss_pred CCcceeehhhhH
Confidence 998766554433
No 45
>KOG4228|consensus
Probab=94.72 E-value=0.097 Score=51.83 Aligned_cols=52 Identities=17% Similarity=0.152 Sum_probs=38.0
Q ss_pred CCCcEEEEcCCCCchhHHHHHHHHHHh-----CCCCHHHHHHHHHhhCCCccCCHHH
Q psy1264 84 SEQNISHFSLAGMSRSVTVTIAYIMSV-----TSLNWKEALKVVRVGRAIANPNNGF 135 (209)
Q Consensus 84 ~~~~VLVHC~~G~sRS~tvv~AYLm~~-----~~~~~~~A~~~vr~~Rp~i~pn~~f 135 (209)
..+++.|||..|.+||++.+++-++.. .-++.=.+++-+|..||.+.-...+
T Consensus 1017 ~~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~~vDVfq~vk~Lr~~rp~mv~t~~Q 1073 (1087)
T KOG4228|consen 1017 ADGPIIVHCLNGVGRTGTFCAISILLERMRKEGVVDVFQTVKTLRFQRPGMVDTSDQ 1073 (1087)
T ss_pred CCCCEEEEEcCCCcceeehHHHHHHHHHHhhcCceeeehhhhhhhhcCccccCcHHH
Confidence 368999999999999998887654332 3356667888888888876444433
No 46
>KOG4228|consensus
Probab=94.44 E-value=0.08 Score=52.40 Aligned_cols=52 Identities=13% Similarity=0.075 Sum_probs=35.6
Q ss_pred CCCcEEEEcCCCCchhHHHHHHH-----HHHhCCCCHHHHHHHHHhhCCCccCCHHH
Q psy1264 84 SEQNISHFSLAGMSRSVTVTIAY-----IMSVTSLNWKEALKVVRVGRAIANPNNGF 135 (209)
Q Consensus 84 ~~~~VLVHC~~G~sRS~tvv~AY-----Lm~~~~~~~~~A~~~vr~~Rp~i~pn~~f 135 (209)
..|+++|||.+|+||||+.++.= ++.....+.-.-+..+|..|+...-...+
T Consensus 729 ~aGPiVVHCSAGvGRTG~fi~iDaml~~~~~e~~vdiy~~v~~lR~QR~~mVQt~eQ 785 (1087)
T KOG4228|consen 729 DAGPIVVHCSAGVGRTGCFIVIDAMLDRLECEGKVDIYGHVKTLRRQRNNMVQTEEQ 785 (1087)
T ss_pred CCCCEEEECCCCCCCcceEEEeHHHHHHHHhhCccceechhHHHHhccccccccHHH
Confidence 56999999999999999865432 22233455666677777778765544433
No 47
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=93.71 E-value=0.096 Score=40.29 Aligned_cols=44 Identities=14% Similarity=0.029 Sum_probs=31.3
Q ss_pred CCCcEEEEcCCCCc--h--hHHHHHHHHHHhCCCCHHHHHHHHHhhCC
Q psy1264 84 SEQNISHFSLAGMS--R--SVTVTIAYIMSVTSLNWKEALKVVRVGRA 127 (209)
Q Consensus 84 ~~~~VLVHC~~G~s--R--S~tvv~AYLm~~~~~~~~~A~~~vr~~Rp 127 (209)
..++.+||+...-. | ++.++.||+|.+.||+.++|++-+.+.-|
T Consensus 65 ~~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~~~p 112 (141)
T PF14671_consen 65 LKKKKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSPEEAYKPLASIQP 112 (141)
T ss_dssp GTTSEEEEEE-S-HHHHHHHHHHHHHHHHHTS---HHHHHHHHTTTT-
T ss_pred hcCCeEEEECCCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCC
Confidence 45788889887655 3 37788999999999999999999987753
No 48
>KOG4471|consensus
Probab=89.12 E-value=0.37 Score=45.02 Aligned_cols=27 Identities=11% Similarity=0.249 Sum_probs=20.7
Q ss_pred cCCCcEEEEcCCCCchhHHHH-HHHHHH
Q psy1264 83 LSEQNISHFSLAGMSRSVTVT-IAYIMS 109 (209)
Q Consensus 83 ~~~~~VLVHC~~G~sRS~tvv-~AYLm~ 109 (209)
..+.+|||||..|..|++-++ +|-||.
T Consensus 372 ~~~~sVlVHCSDGWDRT~QlvsLA~LlL 399 (717)
T KOG4471|consen 372 SESRSVLVHCSDGWDRTAQLVSLAMLLL 399 (717)
T ss_pred cCCceEEEEcCCCccchHHHHHHHHHHh
Confidence 345679999999999998766 455554
No 49
>PRK01415 hypothetical protein; Validated
Probab=87.75 E-value=0.6 Score=39.30 Aligned_cols=86 Identities=14% Similarity=0.154 Sum_probs=44.5
Q ss_pred eeCCeEEcCccCcCCHHHHHhCCCceEEEcccCCCccCCCCcccCCCCCceEEEcCCCCCc--------ccccCCCcEEE
Q psy1264 19 VLPGLYVGNYRDSKDAVQLDRFNITHIVAIHDSARKIHPVSKTKASQPANHYQVDPRGGPD--------QVYLSEQNISH 90 (209)
Q Consensus 19 I~p~LylG~~~~a~~~~~L~~~gIt~Vinl~~~~~~~~~~~~~~~~~~~~~y~I~~~D~~~--------~~~~~~~~VLV 90 (209)
+.|..-.|..-.+.+...+.+..=..||++.+..+. ..+....+ ++ +|+.+..+ ..+..+++|++
T Consensus 104 ~~~~~~~g~~i~p~e~~~ll~~~~~vvIDVRn~~E~-~~Ghi~gA----in--ip~~~f~e~~~~~~~~~~~~k~k~Iv~ 176 (247)
T PRK01415 104 LNVDLFKGEYIEPKDWDEFITKQDVIVIDTRNDYEV-EVGTFKSA----IN--PNTKTFKQFPAWVQQNQELLKGKKIAM 176 (247)
T ss_pred CCccccCccccCHHHHHHHHhCCCcEEEECCCHHHH-hcCCcCCC----CC--CChHHHhhhHHHHhhhhhhcCCCeEEE
Confidence 344333555555555555544444568898775432 11111110 11 33322111 12356789999
Q ss_pred EcCCCCchhHHHHHHHHHHhCCCC
Q psy1264 91 FSLAGMSRSVTVTIAYIMSVTSLN 114 (209)
Q Consensus 91 HC~~G~sRS~tvv~AYLm~~~~~~ 114 (209)
+|.+|+ || ..++++|.. .|.+
T Consensus 177 yCtgGi-Rs-~kAa~~L~~-~Gf~ 197 (247)
T PRK01415 177 VCTGGI-RC-EKSTSLLKS-IGYD 197 (247)
T ss_pred ECCCCh-HH-HHHHHHHHH-cCCC
Confidence 999995 77 555666654 3653
No 50
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=84.01 E-value=4.8 Score=28.23 Aligned_cols=67 Identities=10% Similarity=0.059 Sum_probs=37.9
Q ss_pred HHHhCCCceEEEcccCCCccCCCCcccCCCCCceEEEcCCCCCcccc----cCCCcEEEEcCCCCchhHHHHHHHHHHh
Q psy1264 36 QLDRFNITHIVAIHDSARKIHPVSKTKASQPANHYQVDPRGGPDQVY----LSEQNISHFSLAGMSRSVTVTIAYIMSV 110 (209)
Q Consensus 36 ~L~~~gIt~Vinl~~~~~~~~~~~~~~~~~~~~~y~I~~~D~~~~~~----~~~~~VLVHC~~G~sRS~tvv~AYLm~~ 110 (209)
.+...+-..||++.+..+. .... .+.....||+.+.....- ..+++++|+|..|. || ..++.+|...
T Consensus 14 ~~~~~~~~~liDvR~~~e~-~~~~-----i~~~~~~ip~~~~~~~~~~~~~~~~~~ivv~C~~G~-rS-~~aa~~L~~~ 84 (110)
T COG0607 14 LLLAGEDAVLLDVREPEEY-ERGH-----IPGAAINIPLSELKAAENLLELPDDDPIVVYCASGV-RS-AAAAAALKLA 84 (110)
T ss_pred HhhccCCCEEEeccChhHh-hhcC-----CCcceeeeecccchhhhcccccCCCCeEEEEeCCCC-Ch-HHHHHHHHHc
Confidence 3445556788888766321 1111 011122266666654322 35789999999995 77 5555555554
No 51
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=76.14 E-value=3.6 Score=28.86 Aligned_cols=29 Identities=17% Similarity=0.346 Sum_probs=19.2
Q ss_pred cCCCcEEEEcCCCCchhHHHHHHHHHHhCCCC
Q psy1264 83 LSEQNISHFSLAGMSRSVTVTIAYIMSVTSLN 114 (209)
Q Consensus 83 ~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~~ 114 (209)
..+++|+|+|..| .||... +.+| ...|.+
T Consensus 59 ~~~~~ivvyC~~G-~rs~~a-~~~L-~~~G~~ 87 (101)
T cd01518 59 LKGKKVLMYCTGG-IRCEKA-SAYL-KERGFK 87 (101)
T ss_pred cCCCEEEEECCCc-hhHHHH-HHHH-HHhCCc
Confidence 4667899999998 588543 3344 444653
No 52
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=72.27 E-value=5.9 Score=28.22 Aligned_cols=27 Identities=15% Similarity=0.062 Sum_probs=17.7
Q ss_pred CCCcEEEEcCCCCchhHHHHHHHHHHhCCC
Q psy1264 84 SEQNISHFSLAGMSRSVTVTIAYIMSVTSL 113 (209)
Q Consensus 84 ~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~ 113 (209)
.+.+|+|+|..|. || +.++..| ...|.
T Consensus 65 ~~~~ivv~C~~G~-rs-~~a~~~L-~~~G~ 91 (109)
T cd01533 65 PRTPIVVNCAGRT-RS-IIGAQSL-INAGL 91 (109)
T ss_pred CCCeEEEECCCCc-hH-HHHHHHH-HHCCC
Confidence 4578999999996 77 3333334 44565
No 53
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=70.81 E-value=6.9 Score=24.81 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhh
Q psy1264 100 VTVTIAYIMSVTSLNWKEALKVVRVG 125 (209)
Q Consensus 100 ~tvv~AYLm~~~~~~~~~A~~~vr~~ 125 (209)
..-+.+.||..+|++.++|++.++..
T Consensus 15 I~~AkgiLm~~~g~~e~~A~~~Lr~~ 40 (56)
T PF03861_consen 15 IEQAKGILMARYGLSEDEAYRLLRRQ 40 (56)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 45567889999999999999999874
No 54
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=70.81 E-value=3.7 Score=36.35 Aligned_cols=21 Identities=10% Similarity=0.124 Sum_probs=16.0
Q ss_pred cCCCcEEEEcCCCCchhHHHH
Q psy1264 83 LSEQNISHFSLAGMSRSVTVT 103 (209)
Q Consensus 83 ~~~~~VLVHC~~G~sRS~tvv 103 (209)
..+..|||||..|..|++-++
T Consensus 229 ~~~~~Vlvh~~dGwDrt~q~~ 249 (353)
T PF06602_consen 229 DEGSSVLVHCSDGWDRTSQLS 249 (353)
T ss_dssp TT--EEEEECTTSSSHHHHHH
T ss_pred ccCceEEEEcCCCCcccHHHH
Confidence 467789999999999996554
No 55
>PLN02160 thiosulfate sulfurtransferase
Probab=68.97 E-value=6.6 Score=29.63 Aligned_cols=29 Identities=17% Similarity=0.151 Sum_probs=19.1
Q ss_pred cCCCcEEEEcCCCCchhHHHHHHHHHHhCCCC
Q psy1264 83 LSEQNISHFSLAGMSRSVTVTIAYIMSVTSLN 114 (209)
Q Consensus 83 ~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~~ 114 (209)
..+++|+|||..| .||...+ .++...|.+
T Consensus 79 ~~~~~IivyC~sG-~RS~~Aa--~~L~~~G~~ 107 (136)
T PLN02160 79 NPADDILVGCQSG-ARSLKAT--TELVAAGYK 107 (136)
T ss_pred CCCCcEEEECCCc-HHHHHHH--HHHHHcCCC
Confidence 4567899999999 5885443 333444654
No 56
>smart00400 ZnF_CHCC zinc finger.
Probab=68.57 E-value=6.4 Score=24.79 Aligned_cols=32 Identities=19% Similarity=0.318 Sum_probs=23.6
Q ss_pred EEEcCCCCchhHHHHHHHHHHhCCCCHHHHHHHH
Q psy1264 89 SHFSLAGMSRSVTVTIAYIMSVTSLNWKEALKVV 122 (209)
Q Consensus 89 LVHC~~G~sRS~tvv~AYLm~~~~~~~~~A~~~v 122 (209)
..||.+ -++.+- ++.++|..+|+++.+|++.+
T Consensus 23 ~~~Cf~-cg~gGd-~i~fv~~~~~~sf~eA~~~L 54 (55)
T smart00400 23 FFHCFG-CGAGGN-VISFLMKYDKLSFVEAVKKL 54 (55)
T ss_pred EEEEeC-CCCCCC-HHHHHHHHHCcCHHHHHHHh
Confidence 467774 245554 47778888899999999875
No 57
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=67.81 E-value=8.4 Score=27.85 Aligned_cols=30 Identities=3% Similarity=-0.033 Sum_probs=20.0
Q ss_pred cCCCcEEEEcCCCCchhHHHHHHHHHHhCCCC
Q psy1264 83 LSEQNISHFSLAGMSRSVTVTIAYIMSVTSLN 114 (209)
Q Consensus 83 ~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~~ 114 (209)
..+.+|+|+|..| +++++.++.+| ...|++
T Consensus 77 ~~~~~vv~~c~~g-~~~a~~~~~~l-~~~G~~ 106 (122)
T cd01448 77 SNDDTVVVYDDGG-GFFAARAWWTL-RYFGHE 106 (122)
T ss_pred CCCCEEEEECCCC-CccHHHHHHHH-HHcCCC
Confidence 3577899999998 55656655544 444654
No 58
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=66.53 E-value=7 Score=27.25 Aligned_cols=30 Identities=7% Similarity=0.074 Sum_probs=19.3
Q ss_pred ccCCCcEEEEcCCCCchhHHHHHHHHHHhCCCC
Q psy1264 82 YLSEQNISHFSLAGMSRSVTVTIAYIMSVTSLN 114 (209)
Q Consensus 82 ~~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~~ 114 (209)
+..+++|+|+|..|. ||. .++..| ...|.+
T Consensus 58 ~~~~~~ivv~C~~G~-rs~-~aa~~L-~~~G~~ 87 (100)
T cd01523 58 LPDDQEVTVICAKEG-SSQ-FVAELL-AERGYD 87 (100)
T ss_pred CCCCCeEEEEcCCCC-cHH-HHHHHH-HHcCce
Confidence 356788999999994 773 334444 344653
No 59
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=65.85 E-value=6.8 Score=33.15 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=21.9
Q ss_pred CCCCchhHHHHHHHHHHhCCCCHHHHHHHH
Q psy1264 93 LAGMSRSVTVTIAYIMSVTSLNWKEALKVV 122 (209)
Q Consensus 93 ~~G~sRS~tvv~AYLm~~~~~~~~~A~~~v 122 (209)
--|+|||++.+.+-++ .|++.++|.++-
T Consensus 159 ~PGiSRSG~Ti~~~l~--~G~~r~~A~~fS 186 (259)
T PF02673_consen 159 IPGISRSGATITAGLL--LGLDREEAARFS 186 (259)
T ss_pred CCCcChHHHHHHHHHH--CCCCHHHHHHHH
Confidence 3699999888877654 389999998763
No 60
>KOG1089|consensus
Probab=65.82 E-value=6.3 Score=37.00 Aligned_cols=26 Identities=15% Similarity=0.270 Sum_probs=19.6
Q ss_pred CCCcEEEEcCCCCchhHHHH-HHHHHH
Q psy1264 84 SEQNISHFSLAGMSRSVTVT-IAYIMS 109 (209)
Q Consensus 84 ~~~~VLVHC~~G~sRS~tvv-~AYLm~ 109 (209)
++-+|||||.-|..|+.-|+ +|=||.
T Consensus 343 ~~~sVlvhcsdGwDrT~qV~SLaQllL 369 (573)
T KOG1089|consen 343 EGASVLVHCSDGWDRTCQVSSLAQLLL 369 (573)
T ss_pred CCCeEEEEccCCcchhHHHHHHHHHHh
Confidence 55789999999999996665 444443
No 61
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=65.50 E-value=26 Score=25.48 Aligned_cols=47 Identities=15% Similarity=0.207 Sum_probs=32.8
Q ss_pred CccCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCCCCHHHHHHHHHhhh
Q psy1264 128 IANPNNGFQKQLQDFECFRLADERRRLRERFPSRALASMDEEQCQLLLIAYQ 179 (209)
Q Consensus 128 ~i~pn~~f~~qL~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 179 (209)
.++-+..|.+|+++||+..-+-..+.+.+++.+ +++++...|+.+-+
T Consensus 57 V~t~~MTy~~Q~k~Ye~a~~~~~~~~lqkRle~-----l~~eE~~~L~~eie 103 (104)
T PF11460_consen 57 VVTGKMTYMQQRKDYEEAVDQLTNEELQKRLEE-----LSPEELEALQAEIE 103 (104)
T ss_pred hccCCCcHHHHHHHHHHHHHHHhHHHHHHHHHh-----CCHHHHHHHHHHhc
Confidence 346678899999999997655455566666443 45678888877643
No 62
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=64.56 E-value=8.3 Score=33.52 Aligned_cols=29 Identities=14% Similarity=0.411 Sum_probs=20.3
Q ss_pred cCCCcEEEEcCCCCchhHHHHHHHHHHhCCCC
Q psy1264 83 LSEQNISHFSLAGMSRSVTVTIAYIMSVTSLN 114 (209)
Q Consensus 83 ~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~~ 114 (209)
..+++|+|+|..|+ || ..+++||.. .|.+
T Consensus 169 ~kdk~IvvyC~~G~-Rs-~~aa~~L~~-~Gf~ 197 (314)
T PRK00142 169 LKDKKVVMYCTGGI-RC-EKASAWMKH-EGFK 197 (314)
T ss_pred CCcCeEEEECCCCc-HH-HHHHHHHHH-cCCC
Confidence 36789999999995 77 445666654 4653
No 63
>PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=63.32 E-value=7.7 Score=33.18 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=20.6
Q ss_pred CCCchhHHHHHHHHHHhCCCCHHHHHHH
Q psy1264 94 AGMSRSVTVTIAYIMSVTSLNWKEALKV 121 (209)
Q Consensus 94 ~G~sRS~tvv~AYLm~~~~~~~~~A~~~ 121 (209)
-|+|||++.+.+-|+. |++-++|.++
T Consensus 166 PGiSRSG~TI~a~l~~--G~~r~~Aa~f 191 (276)
T PRK12554 166 PGVSRSGATIIAGLLL--GLTREAAARF 191 (276)
T ss_pred cCCCCchHHHHHHHHc--CCCHHHHHHH
Confidence 5999998877776543 8999999775
No 64
>TIGR00753 undec_PP_bacA undecaprenyl-diphosphatase UppP. This is a family of small, highly hydrophobic proteins. Overexpression of this protein in Escherichia coli is associated with bacitracin resistance, and the protein was originally proposed to be an undecaprenol kinase and called bacA. It is now known to be an undecaprenyl pyrophosphate phosphatase (EC 3.6.1.27) and is renamed UppP.
Probab=62.91 E-value=8.1 Score=32.66 Aligned_cols=26 Identities=31% Similarity=0.335 Sum_probs=20.5
Q ss_pred CCCchhHHHHHHHHHHhCCCCHHHHHHH
Q psy1264 94 AGMSRSVTVTIAYIMSVTSLNWKEALKV 121 (209)
Q Consensus 94 ~G~sRS~tvv~AYLm~~~~~~~~~A~~~ 121 (209)
-|+|||++.+.+-|+ .|++-++|.++
T Consensus 160 PGiSRSG~TI~a~l~--~G~~r~~Aa~f 185 (255)
T TIGR00753 160 PGVSRSGSTISGGLF--IGLNRKAAAEF 185 (255)
T ss_pred cCCCCchHHHHHHHH--cCCCHHHHHHH
Confidence 599999877777554 48999999775
No 65
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=62.51 E-value=9.7 Score=29.67 Aligned_cols=29 Identities=14% Similarity=0.057 Sum_probs=20.0
Q ss_pred CCCcEEEEcCCCCchhHHHHHHHHHHhCCCC
Q psy1264 84 SEQNISHFSLAGMSRSVTVTIAYIMSVTSLN 114 (209)
Q Consensus 84 ~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~~ 114 (209)
++.+|+|.|..|..||.. +++++...|.+
T Consensus 115 ~d~~IVvYC~~G~~~S~~--aa~~L~~~G~~ 143 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSWN--AAKRALAYGYS 143 (162)
T ss_pred CCCEEEEEECCCCHHHHH--HHHHHHhcCCc
Confidence 567899999998777765 44454554543
No 66
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=60.19 E-value=9.7 Score=32.42 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=20.5
Q ss_pred CCCchhHHHHHHHHHHhCCCCHHHHHHH
Q psy1264 94 AGMSRSVTVTIAYIMSVTSLNWKEALKV 121 (209)
Q Consensus 94 ~G~sRS~tvv~AYLm~~~~~~~~~A~~~ 121 (209)
-|+|||++.+.+-|+ .|++.++|.++
T Consensus 164 PGiSRSG~TI~~~l~--~G~~r~~Aa~f 189 (268)
T PRK00281 164 PGTSRSGATISGGLL--LGLSREAAAEF 189 (268)
T ss_pred CCCCccHHHHHHHHH--cCCCHHHHHHH
Confidence 699999877777553 48999998775
No 67
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=57.42 E-value=9.3 Score=27.11 Aligned_cols=19 Identities=37% Similarity=0.452 Sum_probs=14.3
Q ss_pred CCCcEEEEcCCCCchhHHHH
Q psy1264 84 SEQNISHFSLAGMSRSVTVT 103 (209)
Q Consensus 84 ~~~~VLVHC~~G~sRS~tvv 103 (209)
+..+|||-|.+|+| |+.++
T Consensus 2 ~~~~ILl~C~~G~s-SS~l~ 20 (95)
T TIGR00853 2 NETNILLLCAAGMS-TSLLV 20 (95)
T ss_pred CccEEEEECCCchh-HHHHH
Confidence 35689999999998 44433
No 68
>PRK05320 rhodanese superfamily protein; Provisional
Probab=56.95 E-value=13 Score=31.37 Aligned_cols=28 Identities=11% Similarity=0.317 Sum_probs=19.8
Q ss_pred CCCcEEEEcCCCCchhHHHHHHHHHHhCCCC
Q psy1264 84 SEQNISHFSLAGMSRSVTVTIAYIMSVTSLN 114 (209)
Q Consensus 84 ~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~~ 114 (209)
++++|+++|..|+ || ..++++|.. .|.+
T Consensus 174 kdk~IvvyC~~G~-Rs-~~Aa~~L~~-~Gf~ 201 (257)
T PRK05320 174 AGKTVVSFCTGGI-RC-EKAAIHMQE-VGID 201 (257)
T ss_pred CCCeEEEECCCCH-HH-HHHHHHHHH-cCCc
Confidence 5788999999995 77 555666654 3553
No 69
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=55.32 E-value=19 Score=25.11 Aligned_cols=28 Identities=18% Similarity=0.431 Sum_probs=18.0
Q ss_pred CCCcEEEEcCCCCchhHHHHHHHHHHhCCCC
Q psy1264 84 SEQNISHFSLAGMSRSVTVTIAYIMSVTSLN 114 (209)
Q Consensus 84 ~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~~ 114 (209)
.+.+|+|+|..| .||... +.+|. ..|.+
T Consensus 57 ~~~~vv~~c~~g-~rs~~~-~~~l~-~~G~~ 84 (101)
T cd01528 57 PDKDIVVLCHHG-GRSMQV-AQWLL-RQGFE 84 (101)
T ss_pred CCCeEEEEeCCC-chHHHH-HHHHH-HcCCc
Confidence 367899999998 477433 33343 34654
No 70
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=54.66 E-value=15 Score=26.14 Aligned_cols=36 Identities=17% Similarity=0.221 Sum_probs=24.3
Q ss_pred EEEcCCCCchhHHHHHHHHHHhCCCCHHHHHHHHHhhC
Q psy1264 89 SHFSLAGMSRSVTVTIAYIMSVTSLNWKEALKVVRVGR 126 (209)
Q Consensus 89 LVHC~~G~sRS~tvv~AYLm~~~~~~~~~A~~~vr~~R 126 (209)
.-||.+ -+.++- ++.++|...++++.+|++.+.+.-
T Consensus 54 ~~~Cf~-Cg~~Gd-~i~~v~~~~~~~f~eAv~~l~~~~ 89 (97)
T PF01807_consen 54 RFKCFG-CGKGGD-VIDFVMKYEGCSFKEAVKWLAEEF 89 (97)
T ss_dssp EEEETT-T--EE--HHHHHHHHHT--HHHHHHHHHHHH
T ss_pred eEEECC-CCCCCc-HHhHHHHHhCCCHHHHHHHHHHHh
Confidence 678885 456654 477789999999999999987653
No 71
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=53.48 E-value=20 Score=24.71 Aligned_cols=27 Identities=15% Similarity=0.163 Sum_probs=17.6
Q ss_pred CCCcEEEEcCCCCchhHHHHHHHHHHhCCC
Q psy1264 84 SEQNISHFSLAGMSRSVTVTIAYIMSVTSL 113 (209)
Q Consensus 84 ~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~ 113 (209)
.+.+|+|+|..|. ||.. ++.+| ...|.
T Consensus 55 ~~~~iv~~c~~G~-rs~~-aa~~L-~~~G~ 81 (95)
T cd01534 55 RGARIVLADDDGV-RADM-TASWL-AQMGW 81 (95)
T ss_pred CCCeEEEECCCCC-hHHH-HHHHH-HHcCC
Confidence 4678999999985 7643 33344 44565
No 72
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=53.02 E-value=25 Score=24.13 Aligned_cols=29 Identities=10% Similarity=0.054 Sum_probs=17.7
Q ss_pred CCCcEEEEcCCCCchhHHHHHHHHHHhCCC
Q psy1264 84 SEQNISHFSLAGMSRSVTVTIAYIMSVTSL 113 (209)
Q Consensus 84 ~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~ 113 (209)
.+.+|+|+|..|...++..++..| ...|.
T Consensus 49 ~~~~ivl~c~~G~~~~s~~aa~~L-~~~G~ 77 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAARRL-SELGY 77 (92)
T ss_pred CCCeEEEEeCCCCchHHHHHHHHH-HHcCc
Confidence 367899999998533344444444 43454
No 73
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=52.57 E-value=22 Score=26.18 Aligned_cols=30 Identities=13% Similarity=0.288 Sum_probs=19.9
Q ss_pred ccCCCcEEEEcCCCCchhHHHHHHHHHHhCCC
Q psy1264 82 YLSEQNISHFSLAGMSRSVTVTIAYIMSVTSL 113 (209)
Q Consensus 82 ~~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~ 113 (209)
+.++.+|+|.|..|-.||..+ ++++...|.
T Consensus 83 i~~~~~vvvyC~~~G~rs~~a--~~~L~~~G~ 112 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQSL--AWLLESLGI 112 (128)
T ss_pred cCCCCeEEEEeCCCCccHHHH--HHHHHHcCC
Confidence 345678999998544576533 366666665
No 74
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=49.40 E-value=18 Score=24.92 Aligned_cols=14 Identities=36% Similarity=0.351 Sum_probs=11.8
Q ss_pred CcEEEEcCCCCchh
Q psy1264 86 QNISHFSLAGMSRS 99 (209)
Q Consensus 86 ~~VLVHC~~G~sRS 99 (209)
++|+|.|.+|+|=|
T Consensus 1 ~kilvvCg~G~gtS 14 (87)
T cd05567 1 KKIVFACDAGMGSS 14 (87)
T ss_pred CEEEEECCCCccHH
Confidence 47999999999854
No 75
>KOG1530|consensus
Probab=49.07 E-value=34 Score=26.05 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=13.3
Q ss_pred CCCcEEEEcCCCCchhHH
Q psy1264 84 SEQNISHFSLAGMSRSVT 101 (209)
Q Consensus 84 ~~~~VLVHC~~G~sRS~t 101 (209)
..+.+.|+|..|. ||..
T Consensus 88 ~d~eiIf~C~SG~-Rs~~ 104 (136)
T KOG1530|consen 88 HDKEIIFGCASGV-RSLK 104 (136)
T ss_pred CCCcEEEEeccCc-chhH
Confidence 3568999999996 8843
No 76
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=48.37 E-value=26 Score=25.42 Aligned_cols=28 Identities=18% Similarity=0.055 Sum_probs=18.2
Q ss_pred cCCCcEEEEcCCCCchhHHHHHHHHHHhCCC
Q psy1264 83 LSEQNISHFSLAGMSRSVTVTIAYIMSVTSL 113 (209)
Q Consensus 83 ~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~ 113 (209)
..+++|+|+|..|. ||...+ .+ +...|.
T Consensus 70 ~~~~~ivv~C~~G~-rs~~aa-~~-L~~~G~ 97 (122)
T cd01526 70 DKDSPIYVVCRRGN-DSQTAV-RK-LKELGL 97 (122)
T ss_pred CCCCcEEEECCCCC-cHHHHH-HH-HHHcCC
Confidence 45678999999995 774333 33 344466
No 77
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=48.29 E-value=22 Score=24.47 Aligned_cols=29 Identities=14% Similarity=0.258 Sum_probs=18.5
Q ss_pred ccCCCcEEEEcCCCCchhHHHHHHHHHHhCCC
Q psy1264 82 YLSEQNISHFSLAGMSRSVTVTIAYIMSVTSL 113 (209)
Q Consensus 82 ~~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~ 113 (209)
+..+.+|+|+|..| .||.. ++.++...|.
T Consensus 58 ~~~~~~ivv~c~~g-~~s~~--~~~~l~~~G~ 86 (103)
T cd01447 58 FAEDKPFVFYCASG-WRSAL--AGKTLQDMGL 86 (103)
T ss_pred CCCCCeEEEEcCCC-CcHHH--HHHHHHHcCh
Confidence 34678899999988 47643 3344455453
No 78
>PF08094 Toxin_24: Conotoxin TVIIA/GS family; InterPro: IPR012629 This family consists of conotoxins isolated from the venom of cone snail Conus tulipa and Conus geographus. Conotoxin TVIIA, isolated from Conus tulipa displays little sequence homology with other well-characterised pharmacological classes of peptides, but displays similarity with conotoxin GS, a peptide from Conus geographus. Both these peptides block skeletal muscle sodium channels and also share several biochemical features and represent a distinct subgroup of the four-loop conotoxins [].; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1AG7_A 1EYO_A.
Probab=47.16 E-value=13 Score=20.53 Aligned_cols=23 Identities=30% Similarity=0.706 Sum_probs=17.6
Q ss_pred CCCCcccCcccCcccCCc---ccccC
Q psy1264 184 GKHICEGNCAMGEICPTG---MCRAS 206 (209)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~---~~~~~ 206 (209)
.+.-|-+.|-||-+|++| -|.+.
T Consensus 5 r~srcpp~ccmgl~c~rgnpqkci~~ 30 (33)
T PF08094_consen 5 RGSRCPPQCCMGLRCGRGNPQKCIGA 30 (33)
T ss_dssp TTSSSSSSB-TTEEECSSSS-CEEET
T ss_pred CCCCCCchheeeeeecCCCcccceee
Confidence 345788999999999999 77654
No 79
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=46.97 E-value=11 Score=26.90 Aligned_cols=11 Identities=18% Similarity=0.114 Sum_probs=9.1
Q ss_pred CCcEEEEcCCC
Q psy1264 85 EQNISHFSLAG 95 (209)
Q Consensus 85 ~~~VLVHC~~G 95 (209)
..+|||||.-|
T Consensus 85 ~~~~yIhCsIG 95 (97)
T PF10302_consen 85 APRIYIHCSIG 95 (97)
T ss_pred CCeEEEEEecc
Confidence 36899999876
No 80
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=45.64 E-value=32 Score=23.87 Aligned_cols=28 Identities=18% Similarity=0.304 Sum_probs=18.4
Q ss_pred CCCcEEEEcCCCCchhHHHHHHHHHHhCCCC
Q psy1264 84 SEQNISHFSLAGMSRSVTVTIAYIMSVTSLN 114 (209)
Q Consensus 84 ~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~~ 114 (209)
.+.+|+|+|..|. ||.. ++.++...|.+
T Consensus 65 ~~~~ivv~c~~g~-~s~~--~~~~l~~~G~~ 92 (106)
T cd01519 65 KDKELIFYCKAGV-RSKA--AAELARSLGYE 92 (106)
T ss_pred CCCeEEEECCCcH-HHHH--HHHHHHHcCCc
Confidence 4678999999986 6533 34445555653
No 81
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=45.26 E-value=32 Score=23.89 Aligned_cols=26 Identities=8% Similarity=-0.008 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHhCCC
Q psy1264 85 EQNISHFSLAGMSRSVTVTIAYIMSVTSL 113 (209)
Q Consensus 85 ~~~VLVHC~~G~sRS~tvv~AYLm~~~~~ 113 (209)
+..|+|+|..|. ||..++ ..+...|.
T Consensus 65 ~~~vv~~c~~g~-~s~~~a--~~L~~~G~ 90 (105)
T cd01525 65 GKIIVIVSHSHK-HAALFA--AFLVKCGV 90 (105)
T ss_pred CCeEEEEeCCCc-cHHHHH--HHHHHcCC
Confidence 678999999986 664432 23344454
No 82
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=44.92 E-value=25 Score=25.42 Aligned_cols=27 Identities=11% Similarity=0.272 Sum_probs=17.5
Q ss_pred CCCcEEEEcCCCCchhHHHHHHHHHHhCCC
Q psy1264 84 SEQNISHFSLAGMSRSVTVTIAYIMSVTSL 113 (209)
Q Consensus 84 ~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~ 113 (209)
.+.+|+|+|..| .||...+ .+| ...|.
T Consensus 63 ~~~~ivv~C~~G-~rs~~aa-~~L-~~~G~ 89 (117)
T cd01522 63 KDRPVLLLCRSG-NRSIAAA-EAA-AQAGF 89 (117)
T ss_pred CCCeEEEEcCCC-ccHHHHH-HHH-HHCCC
Confidence 567899999998 4775443 333 44454
No 83
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=44.49 E-value=31 Score=23.67 Aligned_cols=28 Identities=0% Similarity=-0.331 Sum_probs=18.1
Q ss_pred cCCCcEEEEcCCCCchhHHHHHHHHHHhCCC
Q psy1264 83 LSEQNISHFSLAGMSRSVTVTIAYIMSVTSL 113 (209)
Q Consensus 83 ~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~ 113 (209)
..+.+|+|+|..| .||.. ++.+| ...|.
T Consensus 54 ~~~~~ivv~c~~g-~~s~~-~~~~l-~~~G~ 81 (96)
T cd01529 54 GRATRYVLTCDGS-LLARF-AAQEL-LALGG 81 (96)
T ss_pred CCCCCEEEEeCCh-HHHHH-HHHHH-HHcCC
Confidence 4567899999877 47744 34444 44464
No 84
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=42.87 E-value=28 Score=29.72 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=18.9
Q ss_pred CCCchhHHHHHHHHHHhCCCCHHHHHHH
Q psy1264 94 AGMSRSVTVTIAYIMSVTSLNWKEALKV 121 (209)
Q Consensus 94 ~G~sRS~tvv~AYLm~~~~~~~~~A~~~ 121 (209)
-|.|||++-+.+-|. .|.+-++|.++
T Consensus 165 PG~SRSGaTI~~~ll--lG~~r~~Aaef 190 (270)
T COG1968 165 PGTSRSGATISGGLL--LGLSREAAAEF 190 (270)
T ss_pred CCCCccHHHHHHHHH--cCCCHHHHHHH
Confidence 599999777666543 37788888765
No 85
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=41.00 E-value=28 Score=28.22 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=19.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhh
Q psy1264 103 TIAYIMSVTSLNWKEALKVVRVG 125 (209)
Q Consensus 103 v~AYLm~~~~~~~~~A~~~vr~~ 125 (209)
+=+.||..+|++-++|++.+|..
T Consensus 150 AKglLM~~~g~sE~EAy~~lR~~ 172 (194)
T COG3707 150 AKGLLMKRRGLSEEEAYKLLRRT 172 (194)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHH
Confidence 34678999999999999999873
No 86
>PHA02540 61 DNA primase; Provisional
Probab=40.92 E-value=51 Score=29.10 Aligned_cols=39 Identities=10% Similarity=-0.012 Sum_probs=30.1
Q ss_pred CCcEEEEcC-CCCchhHHHHHHHHHHhCCCCHHHHHHHHHhhC
Q psy1264 85 EQNISHFSL-AGMSRSVTVTIAYIMSVTSLNWKEALKVVRVGR 126 (209)
Q Consensus 85 ~~~VLVHC~-~G~sRS~tvv~AYLm~~~~~~~~~A~~~vr~~R 126 (209)
.+....||. .|.|. =++.|||.+.++++.||++.+-+..
T Consensus 51 k~~~~yhCFgCGa~G---d~i~Flme~e~lsf~Eav~~la~~~ 90 (337)
T PHA02540 51 KDGGVFKCHNCGYHR---PFGNFLKDYEPDLYREYIMERFKER 90 (337)
T ss_pred CCceEEEecCCCCCC---CHHHHHHHhcCCChHHHHHHHHHHh
Confidence 447899997 45554 4788999999999999999665543
No 87
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=40.57 E-value=47 Score=22.44 Aligned_cols=28 Identities=11% Similarity=0.138 Sum_probs=17.1
Q ss_pred cCCCcEEEEcCCCCchhHHHHHHHHHHhCCC
Q psy1264 83 LSEQNISHFSLAGMSRSVTVTIAYIMSVTSL 113 (209)
Q Consensus 83 ~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~ 113 (209)
..+.+|+|+|..|. || ..+ +..+...|.
T Consensus 54 ~~~~~ivv~c~~g~-~s-~~a-~~~l~~~G~ 81 (96)
T cd01444 54 DRDRPVVVYCYHGN-SS-AQL-AQALREAGF 81 (96)
T ss_pred CCCCCEEEEeCCCC-hH-HHH-HHHHHHcCC
Confidence 46789999999774 44 333 333444454
No 88
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=39.43 E-value=26 Score=25.33 Aligned_cols=14 Identities=36% Similarity=0.349 Sum_probs=11.2
Q ss_pred CcEEEEcCCCCchh
Q psy1264 86 QNISHFSLAGMSRS 99 (209)
Q Consensus 86 ~~VLVHC~~G~sRS 99 (209)
++||+-|.+|+|-|
T Consensus 2 kkILlvCg~G~STS 15 (104)
T PRK09590 2 KKALIICAAGMSSS 15 (104)
T ss_pred cEEEEECCCchHHH
Confidence 47999999999433
No 89
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=37.92 E-value=38 Score=24.75 Aligned_cols=25 Identities=4% Similarity=-0.020 Sum_probs=16.2
Q ss_pred cCCCcEEEEcC-CCCchhHHHHHHHHHH
Q psy1264 83 LSEQNISHFSL-AGMSRSVTVTIAYIMS 109 (209)
Q Consensus 83 ~~~~~VLVHC~-~G~sRS~tvv~AYLm~ 109 (209)
..+..|+|||. .| .||+. ++.+|..
T Consensus 66 ~~~~~vv~yC~~sg-~rs~~-aa~~L~~ 91 (121)
T cd01530 66 KKRRVLIFHCEFSS-KRGPR-MARHLRN 91 (121)
T ss_pred CCCCEEEEECCCcc-ccHHH-HHHHHHH
Confidence 35678999997 66 57644 4445543
No 90
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=37.61 E-value=1.6e+02 Score=24.75 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=19.1
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhh
Q psy1264 103 TIAYIMSVTSLNWKEALKVVRVG 125 (209)
Q Consensus 103 v~AYLm~~~~~~~~~A~~~vr~~ 125 (209)
++..||+.+|++.++|++.++..
T Consensus 231 ~V~vl~~~~g~s~~eA~~~~~~~ 253 (303)
T cd00687 231 LVKVLAEEHGLSLEEAISVVRDM 253 (303)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHH
Confidence 44567888899999999999876
No 91
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=37.05 E-value=49 Score=23.52 Aligned_cols=27 Identities=11% Similarity=0.096 Sum_probs=16.6
Q ss_pred CCCcEEEEcCCCCchhHHHHHHHHHHhCCC
Q psy1264 84 SEQNISHFSLAGMSRSVTVTIAYIMSVTSL 113 (209)
Q Consensus 84 ~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~ 113 (209)
.+.+|+|+|..|. ||... +..| ...|.
T Consensus 57 ~~~~vvlyC~~G~-rS~~a-a~~L-~~~G~ 83 (101)
T TIGR02981 57 KNDTVKLYCNAGR-QSGMA-KDIL-LDMGY 83 (101)
T ss_pred CCCeEEEEeCCCH-HHHHH-HHHH-HHcCC
Confidence 4567999999994 66444 3333 33354
No 92
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=36.90 E-value=31 Score=23.41 Aligned_cols=13 Identities=23% Similarity=0.235 Sum_probs=11.2
Q ss_pred cEEEEcCCCCchh
Q psy1264 87 NISHFSLAGMSRS 99 (209)
Q Consensus 87 ~VLVHC~~G~sRS 99 (209)
+|||-|.+|+|=|
T Consensus 1 kIlvvC~~Gi~TS 13 (90)
T PF02302_consen 1 KILVVCGSGIGTS 13 (90)
T ss_dssp EEEEEESSSSHHH
T ss_pred CEEEECCChHHHH
Confidence 5899999999755
No 93
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=36.18 E-value=44 Score=22.93 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=13.4
Q ss_pred ccCCCcEEEEcCCCCchhH
Q psy1264 82 YLSEQNISHFSLAGMSRSV 100 (209)
Q Consensus 82 ~~~~~~VLVHC~~G~sRS~ 100 (209)
+..+.+|+|+|..|. ||.
T Consensus 51 ~~~~~~iv~~c~~g~-~s~ 68 (99)
T cd01527 51 LVGANAIIFHCRSGM-RTQ 68 (99)
T ss_pred CCCCCcEEEEeCCCc-hHH
Confidence 355678999999984 554
No 94
>COG4738 Predicted transcriptional regulator [Transcription]
Probab=35.62 E-value=30 Score=25.67 Aligned_cols=21 Identities=19% Similarity=0.374 Sum_probs=17.5
Q ss_pred CCCCchhHHHHHHHHHHhCCC
Q psy1264 93 LAGMSRSVTVTIAYIMSVTSL 113 (209)
Q Consensus 93 ~~G~sRS~tvv~AYLm~~~~~ 113 (209)
..|++|+.+.+++||+.....
T Consensus 22 ~lgi~R~vA~tlv~L~~~~E~ 42 (124)
T COG4738 22 ILGIPRNVATTLVCLAKGDEA 42 (124)
T ss_pred HcCCCchHHHHHHHHhcCcch
Confidence 369999999999999986443
No 95
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=34.95 E-value=41 Score=25.29 Aligned_cols=30 Identities=17% Similarity=0.197 Sum_probs=25.4
Q ss_pred CeEEcCccCcCCHHHHHhCCCceEEEcccC
Q psy1264 22 GLYVGNYRDSKDAVQLDRFNITHIVAIHDS 51 (209)
Q Consensus 22 ~LylG~~~~a~~~~~L~~~gIt~Vinl~~~ 51 (209)
.+++|+.....+.+.|++.||+.++.....
T Consensus 86 ~vivGG~~~~~~~~~l~~~Gvd~~~~~gt~ 115 (132)
T TIGR00640 86 LVVVGGVIPPQDFDELKEMGVAEIFGPGTP 115 (132)
T ss_pred EEEEeCCCChHhHHHHHHCCCCEEECCCCC
Confidence 388998877788999999999999987654
No 96
>cd04445 DEP_PLEK1 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 1-like proteins. Pleckstrin 1 plays a role in cell spreading and reorganization of actin cytoskeleton in platelets and leukocytes. Its activity is highly regulated by phosphorylation, mainly by protein kinase C. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=33.17 E-value=38 Score=24.36 Aligned_cols=37 Identities=16% Similarity=0.346 Sum_probs=29.1
Q ss_pred cCCCcEEEEcCCCCchhHHHHHHHHHHhCCCC-HHHHHHHHHh
Q psy1264 83 LSEQNISHFSLAGMSRSVTVTIAYIMSVTSLN-WKEALKVVRV 124 (209)
Q Consensus 83 ~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~~-~~~A~~~vr~ 124 (209)
...++|+=||..| +-++.||+...... -.||+.+-..
T Consensus 22 ~~~~tv~~hcftG-----sdVVdWLv~~~~v~~r~EAl~las~ 59 (99)
T cd04445 22 EKDKKVFNHCFTG-----SCVIDWLVSNQSVRNRQEGLMLASS 59 (99)
T ss_pred HHhhccccceecc-----cHHHHHHHHhhcccchHHHHHHHHH
Confidence 5678999999988 56889999987764 7788776443
No 97
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=32.35 E-value=20 Score=25.15 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=16.9
Q ss_pred cccccCCCCccceeCCeEEcCccC
Q psy1264 7 QIKDWKKDVKRIVLPGLYVGNYRD 30 (209)
Q Consensus 7 ~~~~~~~~~~~~I~p~LylG~~~~ 30 (209)
.++.+-..-+.||.||+|+|+...
T Consensus 12 ~lRG~Ltrwl~Ei~~GVyVg~~s~ 35 (86)
T PF09707_consen 12 RLRGFLTRWLLEIRPGVYVGNVSA 35 (86)
T ss_pred hHhchhhheeEecCCCcEEcCCCH
Confidence 333444455789999999997664
No 98
>PF11237 DUF3038: Protein of unknown function (DUF3038); InterPro: IPR021399 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=32.32 E-value=2.2e+02 Score=22.64 Aligned_cols=46 Identities=15% Similarity=0.196 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHhCCCCHHHHHHHHHhhCCCccCCHHHHHHHHHHHH
Q psy1264 98 RSVTVTIAYIMSVTSLNWKEALKVVRVGRAIANPNNGFQKQLQDFEC 144 (209)
Q Consensus 98 RS~tvv~AYLm~~~~~~~~~A~~~vr~~Rp~i~pn~~f~~qL~~~e~ 144 (209)
||-+++++|+.+..---..+|+..+.+.... .+.+.....|.+|-.
T Consensus 70 raLV~Iic~lA~~~~~lIRqll~~~eQ~~~~-~~~~~~~~ll~~Yl~ 115 (171)
T PF11237_consen 70 RALVLIICYLAKQLQPLIRQLLLLLEQMSSQ-EPPPHQNQLLGDYLD 115 (171)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCChhhHHHHHHHHH
Confidence 7778899999998777788888777776655 455555555666644
No 99
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=32.00 E-value=52 Score=23.56 Aligned_cols=18 Identities=17% Similarity=0.283 Sum_probs=12.8
Q ss_pred CCCcEEEEcCCCCchhHHH
Q psy1264 84 SEQNISHFSLAGMSRSVTV 102 (209)
Q Consensus 84 ~~~~VLVHC~~G~sRS~tv 102 (209)
.+.+|+|+|..| .||...
T Consensus 59 ~~~~IVlyC~~G-~rS~~a 76 (104)
T PRK10287 59 KNDTVKLYCNAG-RQSGQA 76 (104)
T ss_pred CCCeEEEEeCCC-hHHHHH
Confidence 356799999988 465444
No 100
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=31.74 E-value=35 Score=29.33 Aligned_cols=18 Identities=28% Similarity=0.276 Sum_probs=15.9
Q ss_pred cEEEEcCCCCchhHHHHH
Q psy1264 87 NISHFSLAGMSRSVTVTI 104 (209)
Q Consensus 87 ~VLVHC~~G~sRS~tvv~ 104 (209)
.|-|=|.+|..||++++=
T Consensus 244 tIaiGCTGG~HRSV~iae 261 (284)
T PF03668_consen 244 TIAIGCTGGQHRSVAIAE 261 (284)
T ss_pred EEEEEcCCCcCcHHHHHH
Confidence 588999999999998873
No 101
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=31.53 E-value=58 Score=28.99 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=16.9
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHhCCC
Q psy1264 86 QNISHFSLAGMSRSVTVTIAYIMSVTSL 113 (209)
Q Consensus 86 ~~VLVHC~~G~sRS~tvv~AYLm~~~~~ 113 (209)
.+|+|||..| .||. .++.+|.. .|.
T Consensus 333 ~~Ivv~C~sG-~RS~-~Aa~~L~~-~G~ 357 (370)
T PRK05600 333 DNVVVYCASG-IRSA-DFIEKYSH-LGH 357 (370)
T ss_pred CcEEEECCCC-hhHH-HHHHHHHH-cCC
Confidence 3899999999 4775 44455543 455
No 102
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=31.20 E-value=62 Score=23.00 Aligned_cols=18 Identities=6% Similarity=-0.020 Sum_probs=13.2
Q ss_pred CCcEEEEcCCCCchhHHH
Q psy1264 85 EQNISHFSLAGMSRSVTV 102 (209)
Q Consensus 85 ~~~VLVHC~~G~sRS~tv 102 (209)
...|+|||..|-.||+..
T Consensus 66 ~~~iv~~C~~~g~rs~~a 83 (113)
T cd01443 66 VKLAIFYCGSSQGRGPRA 83 (113)
T ss_pred CCEEEEECCCCCcccHHH
Confidence 467999999865677543
No 103
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=31.07 E-value=1.6e+02 Score=20.24 Aligned_cols=35 Identities=26% Similarity=0.326 Sum_probs=22.6
Q ss_pred CCCchh--HHHHHHH-HHHhCCCCHHHHHHHHHhhCCC
Q psy1264 94 AGMSRS--VTVTIAY-IMSVTSLNWKEALKVVRVGRAI 128 (209)
Q Consensus 94 ~G~sRS--~tvv~AY-Lm~~~~~~~~~A~~~vr~~Rp~ 128 (209)
+|+++. ..+--|| ++...+.++++|++.+++..+.
T Consensus 26 ~Gfs~~~i~~l~~ayr~l~~~~~~~~~a~~~l~~~~~~ 63 (83)
T PF13720_consen 26 RGFSKEEISALRRAYRILFRSGLTLEEALEELEEEYPD 63 (83)
T ss_dssp TTS-HHHHHHHHHHHHHHHTSSS-HHHHHHHHHHHTTS
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccC
Confidence 566654 3455667 4445788999999999886655
No 104
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=30.66 E-value=83 Score=22.19 Aligned_cols=30 Identities=7% Similarity=-0.071 Sum_probs=18.3
Q ss_pred ccCCCcEEEEcCCCCc-hhHHHHHHHHHHhCCC
Q psy1264 82 YLSEQNISHFSLAGMS-RSVTVTIAYIMSVTSL 113 (209)
Q Consensus 82 ~~~~~~VLVHC~~G~s-RS~tvv~AYLm~~~~~ 113 (209)
+..+.+|+|+|..|.. || ..++. .+...|.
T Consensus 61 i~~~~~vvvyc~~g~~~~s-~~~a~-~l~~~G~ 91 (110)
T cd01521 61 LDKEKLFVVYCDGPGCNGA-TKAAL-KLAELGF 91 (110)
T ss_pred CCCCCeEEEEECCCCCchH-HHHHH-HHHHcCC
Confidence 3567889999998863 44 33333 3344455
No 105
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=29.77 E-value=37 Score=29.02 Aligned_cols=17 Identities=29% Similarity=0.296 Sum_probs=15.2
Q ss_pred cEEEEcCCCCchhHHHH
Q psy1264 87 NISHFSLAGMSRSVTVT 103 (209)
Q Consensus 87 ~VLVHC~~G~sRS~tvv 103 (209)
.|-|=|.+|..||++++
T Consensus 245 TIaIGCTGGqHRSV~ia 261 (286)
T COG1660 245 TIAIGCTGGQHRSVYIA 261 (286)
T ss_pred EEEEccCCCccchHHHH
Confidence 37899999999999887
No 106
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=29.21 E-value=91 Score=21.37 Aligned_cols=31 Identities=19% Similarity=0.407 Sum_probs=18.7
Q ss_pred cCCCcEEEEcCCCCchhHHHH---HHHHHHhCCCC
Q psy1264 83 LSEQNISHFSLAGMSRSVTVT---IAYIMSVTSLN 114 (209)
Q Consensus 83 ~~~~~VLVHC~~G~sRS~tvv---~AYLm~~~~~~ 114 (209)
..+..|+|+|..|. |+...+ +++.+...|.+
T Consensus 65 ~~~~~iv~yc~~~~-~~~~~~~~~~~~~l~~~g~~ 98 (113)
T PF00581_consen 65 DKDKDIVFYCSSGW-RSGSAAAARVAWILKKLGFK 98 (113)
T ss_dssp TTTSEEEEEESSSC-HHHHHHHHHHHHHHHHTTTS
T ss_pred cccccceeeeeccc-ccchhHHHHHHHHHHHcCCC
Confidence 45667999997775 443333 34445555654
No 107
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=28.36 E-value=96 Score=20.41 Aligned_cols=29 Identities=14% Similarity=0.303 Sum_probs=17.8
Q ss_pred cCCCcEEEEcCCCCchhHHHHHHHHHHhCCCC
Q psy1264 83 LSEQNISHFSLAGMSRSVTVTIAYIMSVTSLN 114 (209)
Q Consensus 83 ~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~~ 114 (209)
..+..|+|+|..|. |+ ..+++.+...|..
T Consensus 54 ~~~~~iv~~c~~g~-~a--~~~~~~l~~~G~~ 82 (100)
T smart00450 54 DKDKPVVVYCRSGN-RS--AKAAWLLRELGFK 82 (100)
T ss_pred CCCCeEEEEeCCCc-HH--HHHHHHHHHcCCC
Confidence 56678999996654 55 3334444555554
No 108
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=27.45 E-value=77 Score=27.97 Aligned_cols=28 Identities=14% Similarity=0.101 Sum_probs=18.1
Q ss_pred CCCcEEEEcCCCCchhHHHHHHHHHHhCCC
Q psy1264 84 SEQNISHFSLAGMSRSVTVTIAYIMSVTSL 113 (209)
Q Consensus 84 ~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~ 113 (209)
.+.+|+|+|..|-.||..++ .++...|.
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa--~~L~~~G~ 114 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQ--QWLKEAGI 114 (345)
T ss_pred CCCeEEEEECCCChHHHHHH--HHHHHcCC
Confidence 56789999976556886653 33334454
No 109
>PRK07411 hypothetical protein; Validated
Probab=27.41 E-value=70 Score=28.61 Aligned_cols=29 Identities=14% Similarity=0.256 Sum_probs=19.1
Q ss_pred cCCCcEEEEcCCCCchhHHHHHHHHHHhCCCC
Q psy1264 83 LSEQNISHFSLAGMSRSVTVTIAYIMSVTSLN 114 (209)
Q Consensus 83 ~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~~ 114 (209)
..+.+|+|||..|. ||.. ++.. ++..|.+
T Consensus 340 ~~d~~IVvyC~~G~-RS~~-aa~~-L~~~G~~ 368 (390)
T PRK07411 340 LNGHRLIAHCKMGG-RSAK-ALGI-LKEAGIE 368 (390)
T ss_pred CCCCeEEEECCCCH-HHHH-HHHH-HHHcCCC
Confidence 45678999999986 7743 3333 3455654
No 110
>COG0358 DnaG DNA primase (bacterial type) [DNA replication, recombination, and repair]
Probab=27.29 E-value=3.5e+02 Score=25.47 Aligned_cols=53 Identities=13% Similarity=0.178 Sum_probs=37.7
Q ss_pred EcCCCCCcccc-cCCCcEEEEcC-CCCchhHHHHHHHHHHhCCCCHHHHHHHHHhhCC
Q psy1264 72 VDPRGGPDQVY-LSEQNISHFSL-AGMSRSVTVTIAYIMSVTSLNWKEALKVVRVGRA 127 (209)
Q Consensus 72 I~~~D~~~~~~-~~~~~VLVHC~-~G~sRS~tvv~AYLm~~~~~~~~~A~~~vr~~Rp 127 (209)
-|..+.-++.| -...+++-||. .|.|. =++.++|...|.++.+|+..+-.+--
T Consensus 37 CPFH~EktPSf~V~~~k~~yhCFGCg~~G---d~i~Fl~~~~g~sf~eav~~La~~~g 91 (568)
T COG0358 37 CPFHAEKTPSFTVSPEKGFYHCFGCGAGG---DAIKFLMELLGLSFDEAVLQLAGRAG 91 (568)
T ss_pred CcCCCCCCCCceEeCCCCeEecCCCCCCc---cHHHHHHHhcCCCHHHHHHHHHHHhC
Confidence 34444444444 34567888997 34443 36889999999999999999887754
No 111
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=27.05 E-value=60 Score=23.72 Aligned_cols=31 Identities=16% Similarity=0.108 Sum_probs=24.4
Q ss_pred CeEEcCccCcCCHHHHHhCCCceEEEcccCC
Q psy1264 22 GLYVGNYRDSKDAVQLDRFNITHIVAIHDSA 52 (209)
Q Consensus 22 ~LylG~~~~a~~~~~L~~~gIt~Vinl~~~~ 52 (209)
.+++|+.....+.+.+++.||+.++......
T Consensus 83 ~i~~GG~~~~~~~~~~~~~G~d~~~~~~~~~ 113 (122)
T cd02071 83 LVVGGGIIPPEDYELLKEMGVAEIFGPGTSI 113 (122)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEECCCCCH
Confidence 3788887666678889999999999876543
No 112
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=26.90 E-value=68 Score=30.59 Aligned_cols=38 Identities=16% Similarity=0.092 Sum_probs=30.2
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHH---hCCCCHHHHHHHHHhh
Q psy1264 85 EQNISHFSLAGMSRSVTVTIAYIMS---VTSLNWKEALKVVRVG 125 (209)
Q Consensus 85 ~~~VLVHC~~G~sRS~tvv~AYLm~---~~~~~~~~A~~~vr~~ 125 (209)
-.+..|||.-|. +++++++||+ ..++++++|++.++.+
T Consensus 160 ~~pdviH~ND~H---tal~~~el~r~l~~~~~~~~~a~~~~~~~ 200 (601)
T TIGR02094 160 IDPDVYHLNEGH---AAFVTLERIRELIAQGLSFEEAWEAVRKS 200 (601)
T ss_pred CCceEEEeCCch---HHHHHHHHHHHHHHcCCCHHHHHHhcCCe
Confidence 367999999997 5888889865 4588999998876653
No 113
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=26.68 E-value=1.1e+02 Score=22.73 Aligned_cols=41 Identities=12% Similarity=0.107 Sum_probs=28.3
Q ss_pred HHHHHHHHHhCCCCHHHHHH---HHHhhCCCccCCHHHHHHHHHHHHH
Q psy1264 101 TVTIAYIMSVTSLNWKEALK---VVRVGRAIANPNNGFQKQLQDFECF 145 (209)
Q Consensus 101 tvv~AYLm~~~~~~~~~A~~---~vr~~Rp~i~pn~~f~~qL~~~e~~ 145 (209)
||+.|| ..+-....|++ ++.++.+ +.....||..|.+|.-.
T Consensus 57 AIv~sf---~~n~~i~~al~~vd~fs~~Y~-I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 57 AIVHSF---GYNGDIFSALKLVDFFSRKYP-IPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HHHHHH---HhcccHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHH
Confidence 555665 23445666655 5556777 67789999999999763
No 114
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=26.57 E-value=1.3e+02 Score=26.36 Aligned_cols=32 Identities=19% Similarity=0.230 Sum_probs=27.1
Q ss_pred cCCCCchhHHHHHHHHHHhCCCCHHHHHHHHHh
Q psy1264 92 SLAGMSRSVTVTIAYIMSVTSLNWKEALKVVRV 124 (209)
Q Consensus 92 C~~G~sRS~tvv~AYLm~~~~~~~~~A~~~vr~ 124 (209)
.+-|.+|. +.=++.+++...||-+||++.|+.
T Consensus 283 ~KfG~~~~-~~~~s~~IR~G~itReeal~~v~~ 314 (343)
T TIGR03573 283 LKFGFGRA-TDHASIDIRSGRITREEAIELVKE 314 (343)
T ss_pred hhcCCCcC-chHHHHHHHcCCCCHHHHHHHHHH
Confidence 45899987 666777888888999999999998
No 115
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=26.18 E-value=49 Score=28.39 Aligned_cols=18 Identities=28% Similarity=0.276 Sum_probs=15.7
Q ss_pred cEEEEcCCCCchhHHHHH
Q psy1264 87 NISHFSLAGMSRSVTVTI 104 (209)
Q Consensus 87 ~VLVHC~~G~sRS~tvv~ 104 (209)
.|-|=|.+|..||++++-
T Consensus 247 ~i~igCtGG~HRSV~~~e 264 (288)
T PRK05416 247 TIAIGCTGGQHRSVAIAE 264 (288)
T ss_pred EEEEecCCCcccHHHHHH
Confidence 388999999999998873
No 116
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=25.62 E-value=51 Score=26.02 Aligned_cols=33 Identities=30% Similarity=0.449 Sum_probs=26.2
Q ss_pred CCccceeCCeEEcCccCcCCHHH--HHhCCCceEEE
Q psy1264 14 DVKRIVLPGLYVGNYRDSKDAVQ--LDRFNITHIVA 47 (209)
Q Consensus 14 ~~~~~I~p~LylG~~~~a~~~~~--L~~~gIt~Vin 47 (209)
..++-+.|++|+-+..+. +.+. |++.||++||-
T Consensus 12 ~~p~l~~P~l~V~si~~I-~~~~~~Lk~~Gik~li~ 46 (168)
T PF09419_consen 12 RNPSLLLPHLYVPSIRDI-DFEANHLKKKGIKALIF 46 (168)
T ss_pred cCccccCCCEEcCChhhC-CcchhhhhhcCceEEEE
Confidence 356788999999877655 5666 99999999884
No 117
>PF07359 LEAP-2: Liver-expressed antimicrobial peptide 2 precursor (LEAP-2); InterPro: IPR009955 This family consists of several mammalian liver-expressed antimicrobial peptide 2 (LEAP-2) sequences. LEAP-2 is a cysteine-rich, and cationic protein. LEAP-2 contains a core structure with two disulphide bonds formed by cysteine residues in relative 1-3 and 2-4 positions. LEAP-2 is synthesised as a 77-residue precursor, which is predominantly expressed in the liver and highly conserved among mammals. The largest native LEAP-2 form of 40 amino acid residues is generated from the precursor at a putative cleavage site for a furin-like endoprotease. In contrast to smaller LEAP-2 variants, this peptide exhibits dose-dependent antimicrobial activity against selected microbial model organisms []. The exact function of this family is unclear.; GO: 0042742 defense response to bacterium; PDB: 2L1Q_A.
Probab=25.50 E-value=34 Score=23.32 Aligned_cols=18 Identities=33% Similarity=0.885 Sum_probs=12.7
Q ss_pred cCcccCcccCCcccccCC
Q psy1264 190 GNCAMGEICPTGMCRASR 207 (209)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~ 207 (209)
+.|..+--|.||+||..+
T Consensus 52 AsCrd~~EC~T~lCR~~~ 69 (77)
T PF07359_consen 52 ASCRDNSECSTGLCRKGH 69 (77)
T ss_dssp SB-SSGGGBTTS-EETTE
T ss_pred chhccchhhhHHHhcCCc
Confidence 358888889999999753
No 118
>PF08283 Gemini_AL1_M: Geminivirus rep protein central domain; InterPro: IPR022692 Geminiviruses are characterised by a genome of circular single-stranded DNA encapsidated in twinned (geminate) quasi-isometric particles, from which the group derives its name []. Most geminiviruses can be divided into two subgroups on the basis of host range and/or insect vector: i.e. those that infect dicotyledenous plants and are transmitted by the same whitefly species, and those that infect monocotyledenous plants and are transmitted by different leafhopper vectors. The genomes of the whitefly-transmitted African cassava mosaic virus, Tomato golden mosaic virus (TGMV) and Bean golden mosaic virus (BGMV) possess a bipartite genome. By contrast, only a single DNA component has been identified for the leafhopper-transmitted Maize streak virus (MSV) and Wheat dwarf virus (WDV) [, ]. Beet curly top virus (BCTV), and Tobacco yellow dwarf virus belong to a third possible subgroup. Like MSV and WDV, BCTV is transmitted by a specific leafhopper species, yet like the whitefly-transmitted geminiviruses it has a host range confined to dicotyledenous plants. Sequence comparison of the whitefly-transmitted Squash leaf curl virus (SqLCV) and Tomato yellow leaf curl virus (TYLCV) with the genomic components of TGMV and BGMV reveals a close evolutionary relationship [, , ]. Amino acid sequence alignments of Potato yellow mosaic virus (PYMV) proteins with those encoded by other geminiviruses show that PYMV is closely related to geminiviruses isolated from the New World, especially in the putative coat protein gene regions []. Comparison of MSV DNA-encoded proteins with those of other geminiviruses infecting monocotyledonous plants, including Panicum streak virus [] and Miscanthus streak virus (MiSV) [], reveal high levels of similarity. This is the central region of the geminivirus rep proteins []. It is found C-terminal to PF00799 from PFAM and is thought to be responsible for oligomerisation.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters
Probab=25.49 E-value=2.2e+02 Score=20.69 Aligned_cols=62 Identities=15% Similarity=0.075 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHHHhhCCCccCCHHHHHHHHHHHHHHHH---HHHHHHHhhCCCCcCCCCCHHHHHHHHHhh
Q psy1264 111 TSLNWKEALKVVRVGRAIANPNNGFQKQLQDFECFRLA---DERRRLRERFPSRALASMDEEQCQLLLIAY 178 (209)
Q Consensus 111 ~~~~~~~A~~~vr~~Rp~i~pn~~f~~qL~~~e~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 178 (209)
..-+-+||+..||+.-|. .|.-|+..++..+-. .........|+.+.+. ..+++++.++.++
T Consensus 14 na~sk~EaL~iike~~P~-----d~~~q~hnl~~na~riF~~~~e~y~~Pf~~ssf~-~~pe~i~~W~~~n 78 (106)
T PF08283_consen 14 NAGSKEEALSIIKELAPK-----DWVLQLHNLEYNADRIFPPPPEPYVSPFPLSSFL-QVPEEIEEWADEN 78 (106)
T ss_pred hcCCHHHHHHHHHhcCch-----HHHHHhHHHHHHHHHhCCCCCccccCCCCChhhc-cCChHHHHHHHhc
Confidence 467889999999999887 677788877753211 1112233344534443 3467777777654
No 119
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=24.54 E-value=82 Score=24.26 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=24.3
Q ss_pred ccceeCCeEEcCccCcCCHHHHHhCCCceEEEcc
Q psy1264 16 KRIVLPGLYVGNYRDSKDAVQLDRFNITHIVAIH 49 (209)
Q Consensus 16 ~~~I~p~LylG~~~~a~~~~~L~~~gIt~Vinl~ 49 (209)
...|. +++|+.-...|...|+++|+..|+.-.
T Consensus 92 ~~~i~--v~~GGvip~~d~~~l~~~G~~~if~pg 123 (143)
T COG2185 92 VEDIL--VVVGGVIPPGDYQELKEMGVDRIFGPG 123 (143)
T ss_pred CcceE--EeecCccCchhHHHHHHhCcceeeCCC
Confidence 34444 678888888888888889998888753
No 120
>PHA03338 US22 family homolog; Provisional
Probab=24.34 E-value=73 Score=27.59 Aligned_cols=39 Identities=8% Similarity=0.020 Sum_probs=29.6
Q ss_pred EEcCCCCchhHHHHHH-HHHHhCCCCHHHHHHHHHhhCCC
Q psy1264 90 HFSLAGMSRSVTVTIA-YIMSVTSLNWKEALKVVRVGRAI 128 (209)
Q Consensus 90 VHC~~G~sRS~tvv~A-YLm~~~~~~~~~A~~~vr~~Rp~ 128 (209)
|||.+|++=|+.++-- |++..++.+.+....+|...+-.
T Consensus 161 ihC~agl~esgill~R~w~~ir~~~g~dav~RFviR~HGe 200 (344)
T PHA03338 161 IHCRAGLGEIGILLGRLWLLIRQGADADAVARFVVRAHGE 200 (344)
T ss_pred eccccccchhHHHHHHHHHHHHhhcCcchhhhhhhhccCc
Confidence 6999999877666644 56667788888888888776654
No 121
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=24.25 E-value=90 Score=22.07 Aligned_cols=20 Identities=5% Similarity=0.064 Sum_probs=13.7
Q ss_pred CCcEEEEcCCCCchhHHHHH
Q psy1264 85 EQNISHFSLAGMSRSVTVTI 104 (209)
Q Consensus 85 ~~~VLVHC~~G~sRS~tvv~ 104 (209)
+.+|+|||..|-.||...+-
T Consensus 62 ~~~iv~yC~~~~~r~~~aa~ 81 (113)
T cd01531 62 KDTVVFHCALSQVRGPSAAR 81 (113)
T ss_pred CCeEEEEeecCCcchHHHHH
Confidence 46899999844467755443
No 122
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=24.18 E-value=35 Score=23.97 Aligned_cols=25 Identities=16% Similarity=0.110 Sum_probs=17.4
Q ss_pred ccccccCCCCccceeCCeEEcCccC
Q psy1264 6 IQIKDWKKDVKRIVLPGLYVGNYRD 30 (209)
Q Consensus 6 ~~~~~~~~~~~~~I~p~LylG~~~~ 30 (209)
..++.+-..-+.||.||+|+|+...
T Consensus 11 ~~lRG~Lt~wllEv~~GVyVg~~s~ 35 (87)
T TIGR01873 11 PRLRGRLALWLLEPRAGVYVGGVSA 35 (87)
T ss_pred hhHhchhhhheeecCCCcEEcCCCH
Confidence 3344444455789999999997654
No 123
>PF14420 Clr5: Clr5 domain
Probab=24.16 E-value=1.9e+02 Score=18.01 Aligned_cols=33 Identities=3% Similarity=0.297 Sum_probs=22.3
Q ss_pred hCCCCHHHHHHHHHhhCCCccCCHHHHHHHHHH
Q psy1264 110 VTSLNWKEALKVVRVGRAIANPNNGFQKQLQDF 142 (209)
Q Consensus 110 ~~~~~~~~A~~~vr~~Rp~i~pn~~f~~qL~~~ 142 (209)
..++++++..+.++.......-...+..+|+.|
T Consensus 18 ~e~~tl~~v~~~M~~~~~F~at~rqy~~r~~~W 50 (54)
T PF14420_consen 18 DENKTLEEVMEIMKEEHGFKATKRQYKRRFKKW 50 (54)
T ss_pred hCCCcHHHHHHHHHHHhCCCcCHHHHHHHHHHc
Confidence 569999999999988876632233444445444
No 124
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=23.73 E-value=1.9e+02 Score=17.91 Aligned_cols=32 Identities=22% Similarity=0.322 Sum_probs=20.6
Q ss_pred CCCchhHHHHHHHHHHhCCCCHHHHHHHHHhhC
Q psy1264 94 AGMSRSVTVTIAYIMSVTSLNWKEALKVVRVGR 126 (209)
Q Consensus 94 ~G~sRS~tvv~AYLm~~~~~~~~~A~~~vr~~R 126 (209)
.|++|. |+.++.=+-..|.+++.--..|+..|
T Consensus 17 tgLd~e-tL~ici~L~e~GVnPeaLA~vI~elr 48 (48)
T PF12554_consen 17 TGLDRE-TLSICIELCENGVNPEALAAVIKELR 48 (48)
T ss_pred CCCCHH-HHHHHHHHHHCCCCHHHHHHHHHHhC
Confidence 388888 44444434445999986666666654
No 125
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=23.60 E-value=67 Score=23.28 Aligned_cols=14 Identities=43% Similarity=0.449 Sum_probs=12.2
Q ss_pred CcEEEEcCCCCchh
Q psy1264 86 QNISHFSLAGMSRS 99 (209)
Q Consensus 86 ~~VLVHC~~G~sRS 99 (209)
.++|+-|.+|.|-|
T Consensus 2 k~IlLvC~aGmSTS 15 (102)
T COG1440 2 KKILLVCAAGMSTS 15 (102)
T ss_pred ceEEEEecCCCcHH
Confidence 47899999999866
No 126
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=23.51 E-value=66 Score=22.57 Aligned_cols=17 Identities=12% Similarity=0.024 Sum_probs=13.1
Q ss_pred CcEEEEcCCCCchhHHH
Q psy1264 86 QNISHFSLAGMSRSVTV 102 (209)
Q Consensus 86 ~~VLVHC~~G~sRS~tv 102 (209)
.+|||-|.+|++-|..+
T Consensus 3 ~kILvvCgsG~~TS~m~ 19 (94)
T PRK10310 3 RKIIVACGGAVATSTMA 19 (94)
T ss_pred CeEEEECCCchhHHHHH
Confidence 37999999999866443
No 127
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=23.02 E-value=64 Score=22.66 Aligned_cols=13 Identities=46% Similarity=0.422 Sum_probs=11.2
Q ss_pred cEEEEcCCCCchh
Q psy1264 87 NISHFSLAGMSRS 99 (209)
Q Consensus 87 ~VLVHC~~G~sRS 99 (209)
+||+-|.+|++=|
T Consensus 1 kIl~~Cg~G~sTS 13 (96)
T cd05564 1 KILLVCSAGMSTS 13 (96)
T ss_pred CEEEEcCCCchHH
Confidence 5899999999765
No 128
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=22.80 E-value=72 Score=22.81 Aligned_cols=19 Identities=11% Similarity=0.163 Sum_probs=13.0
Q ss_pred cEEEEcCCCCchhHHHHHHHH
Q psy1264 87 NISHFSLAGMSRSVTVTIAYI 107 (209)
Q Consensus 87 ~VLVHC~~G~sRS~tvv~AYL 107 (209)
+|||-|.+| -|.++++--+
T Consensus 2 ~Ill~C~~G--aSSs~la~km 20 (99)
T cd05565 2 NVLVLCAGG--GTSGLLANAL 20 (99)
T ss_pred EEEEECCCC--CCHHHHHHHH
Confidence 589999887 4556665543
No 129
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=22.75 E-value=79 Score=22.76 Aligned_cols=31 Identities=26% Similarity=0.247 Sum_probs=18.7
Q ss_pred CCcEEEEcCCCCchhHHH-HHHHHHHhCCCCH
Q psy1264 85 EQNISHFSLAGMSRSVTV-TIAYIMSVTSLNW 115 (209)
Q Consensus 85 ~~~VLVHC~~G~sRS~tv-v~AYLm~~~~~~~ 115 (209)
.++||+-|.+|+|-|-.+ =+--.....|+++
T Consensus 3 ~kkIllvC~~G~sTSll~~km~~~~~~~gi~~ 34 (106)
T PRK10499 3 KKHIYLFCSAGMSTSLLVSKMRAQAEKYEVPV 34 (106)
T ss_pred CCEEEEECCCCccHHHHHHHHHHHHHHCCCCE
Confidence 357999999999866433 1222224455553
No 130
>PF14698 ASL_C2: Argininosuccinate lyase C-terminal; PDB: 1XWO_A 2E9F_A 1TJW_C 1TJU_A 1DCN_B 1K7W_B 1HY1_C 1TJV_B 1AUW_A 1U15_B ....
Probab=22.65 E-value=1.7e+02 Score=19.30 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHh
Q psy1264 100 VTVTIAYIMSVTSLNWKEALKVVRV 124 (209)
Q Consensus 100 ~tvv~AYLm~~~~~~~~~A~~~vr~ 124 (209)
+|=++=||++. |+++++|.+.|-.
T Consensus 4 ATdlAD~LVr~-GipFR~AH~iVg~ 27 (70)
T PF14698_consen 4 ATDLADYLVRK-GIPFREAHHIVGR 27 (70)
T ss_dssp HHHHHHHHHHT-TS-HHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCHHHHHHHHHH
Confidence 45566689998 9999999988754
No 131
>COG4347 Predicted membrane protein [Function unknown]
Probab=22.52 E-value=1e+02 Score=24.67 Aligned_cols=41 Identities=20% Similarity=0.303 Sum_probs=28.8
Q ss_pred ceEEEcCCCCCcccccCCCcEEEEcCCCCchhHHHHHHHHHHhCCCCHHHHHHHHHh
Q psy1264 68 NHYQVDPRGGPDQVYLSEQNISHFSLAGMSRSVTVTIAYIMSVTSLNWKEALKVVRV 124 (209)
Q Consensus 68 ~~y~I~~~D~~~~~~~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~~~~~A~~~vr~ 124 (209)
-++.|=++|+|...+- =+...+||++++ ++++-||+++|--
T Consensus 44 ~~f~IFVPDSPTA~Lf---------------f~~sLvafl~~k-~~~lleAlAfvtl 84 (200)
T COG4347 44 AHFWIFVPDSPTATLF---------------FVFSLVAFLLKK-NASLLEALAFVTL 84 (200)
T ss_pred cceEEEcCCCCcchHH---------------HHHHHHHHHHHc-cchHHHHHHHHHH
Confidence 3455666676665531 135678899987 9999999999864
No 132
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=22.22 E-value=38 Score=24.35 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=16.8
Q ss_pred cccccCCCCccceeCCeEEcCccC
Q psy1264 7 QIKDWKKDVKRIVLPGLYVGNYRD 30 (209)
Q Consensus 7 ~~~~~~~~~~~~I~p~LylG~~~~ 30 (209)
.++.+-..-+.||.+|+|+|+...
T Consensus 14 ~lRG~Lt~wllEv~~GVyVg~~S~ 37 (97)
T PRK11558 14 RLRGRLAVWLLEVRAGVYVGDVSR 37 (97)
T ss_pred hHhhhhhhheEecCCCcEEcCCCH
Confidence 334444455789999999997654
No 133
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=22.12 E-value=1.3e+02 Score=21.20 Aligned_cols=27 Identities=4% Similarity=0.220 Sum_probs=17.7
Q ss_pred CCCcEEEEcCCCCchhHHHHHHHHHHhCCC
Q psy1264 84 SEQNISHFSLAGMSRSVTVTIAYIMSVTSL 113 (209)
Q Consensus 84 ~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~ 113 (209)
.+.+|+|+|..|. ||..+ ++.+...|.
T Consensus 77 ~~~~iv~yc~~g~-~s~~~--~~~l~~~G~ 103 (118)
T cd01449 77 PDKPVIVYCGSGV-TACVL--LLALELLGY 103 (118)
T ss_pred CCCCEEEECCcHH-HHHHH--HHHHHHcCC
Confidence 5678999999884 65433 444455555
No 134
>COG1636 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.76 E-value=4.5e+02 Score=21.45 Aligned_cols=84 Identities=17% Similarity=0.247 Sum_probs=41.5
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHhCCCCHHHHHHHHHhhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCC
Q psy1264 85 EQNISHFSLAGMSRSVTVTIAYIMSVTSLNWKEALKVVRVGRAIANPNNGFQKQLQDFECFRLADERRRLRERFPSRALA 164 (209)
Q Consensus 85 ~~~VLVHC~~G~sRS~tvv~AYLm~~~~~~~~~A~~~vr~~Rp~i~pn~~f~~qL~~~e~~~l~~~~~~~~~~~~~~~~~ 164 (209)
.++|||||-.+- ...|.|.+ +.++ -.+-.--..+||... +.+|+. ...+..+.-+.++ ..+-
T Consensus 3 ~~kiLlH~CCAP------cs~y~le~----l~~~--~~~i~~yFYNPNIhP---~~EY~~--R~~e~~~f~~~~~-i~~i 64 (204)
T COG1636 3 RPKLLLHSCCAP------CSGYVLEK----LRDS--GIKITIYFYNPNIHP---LSEYEL--RKEEVKRFAEKFG-INFI 64 (204)
T ss_pred CCeeEEEeecCC------CcHHHHHH----HHhc--CcceEEEEeCCCCCc---hHHHHH--HHHHHHHHHHHcC-Ceee
Confidence 467999987654 23344433 1111 000001123555533 445553 3333344556666 4444
Q ss_pred CCCHHHHHHHHHhhhhhhcCCC
Q psy1264 165 SMDEEQCQLLLIAYQGLLSGKH 186 (209)
Q Consensus 165 ~~~~~~~~~~l~~~~~~~~~~~ 186 (209)
+.|-++.+.++..-..+.....
T Consensus 65 egdY~~~~~w~~~vKg~E~EpE 86 (204)
T COG1636 65 EGDYEDLEKWFERVKGMEDEPE 86 (204)
T ss_pred ecCcccHHHHHHHhhcchhCCC
Confidence 5566677778777665554433
No 135
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=21.26 E-value=1.1e+02 Score=28.32 Aligned_cols=28 Identities=11% Similarity=0.145 Sum_probs=18.6
Q ss_pred cCCCcEEEEcCCCCchhHHHHHHHHHHhCCC
Q psy1264 83 LSEQNISHFSLAGMSRSVTVTIAYIMSVTSL 113 (209)
Q Consensus 83 ~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~ 113 (209)
..+++++|+|..|. || +.++.+|. ..|.
T Consensus 447 ~~~~~iivyC~~G~-rS-~~aa~~L~-~~G~ 474 (482)
T PRK01269 447 DQSKTYLLYCDRGV-MS-RLQALYLR-EQGF 474 (482)
T ss_pred CCCCeEEEECCCCH-HH-HHHHHHHH-HcCC
Confidence 45678999999996 76 44444553 3354
No 136
>KOG1004|consensus
Probab=20.92 E-value=2.1e+02 Score=23.67 Aligned_cols=40 Identities=8% Similarity=-0.061 Sum_probs=31.0
Q ss_pred cCCCcEEEEcCCCCchhHHHHHHHHHHhCCCCHHHHHHHHHh
Q psy1264 83 LSEQNISHFSLAGMSRSVTVTIAYIMSVTSLNWKEALKVVRV 124 (209)
Q Consensus 83 ~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~~~~~A~~~vr~ 124 (209)
..+|+|-|||.. .+...+++-+||....|+-+++...++.
T Consensus 183 GlNGriWV~ae~--~~~t~~i~~~l~~~e~~td~~q~~~~k~ 222 (230)
T KOG1004|consen 183 GLNGRIWVKAET--LSDTLIIANILMNCEFMTDTQQRIMVKQ 222 (230)
T ss_pred ecCceEEEeccC--cchHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 568999999976 3444555668999999999998866654
No 137
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=20.80 E-value=33 Score=20.59 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=16.0
Q ss_pred CCCcEEEEcCCCCchhHHHHHHHHHHh
Q psy1264 84 SEQNISHFSLAGMSRSVTVTIAYIMSV 110 (209)
Q Consensus 84 ~~~~VLVHC~~G~sRS~tvv~AYLm~~ 110 (209)
.+|.+||.|--|+ .+..++|-++++
T Consensus 7 p~GVIlVF~lVgl--v~i~iva~~iYR 31 (43)
T PF08114_consen 7 PGGVILVFCLVGL--VGIGIVALFIYR 31 (43)
T ss_pred CCCeeeehHHHHH--HHHHHHHHHHHH
Confidence 4789999999886 333344444443
No 138
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=20.72 E-value=1.8e+02 Score=28.77 Aligned_cols=41 Identities=15% Similarity=0.210 Sum_probs=33.9
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHH----hCCCCHHHHHHHHHhhCCC
Q psy1264 85 EQNISHFSLAGMSRSVTVTIAYIMS----VTSLNWKEALKVVRVGRAI 128 (209)
Q Consensus 85 ~~~VLVHC~~G~sRS~tvv~AYLm~----~~~~~~~~A~~~vr~~Rp~ 128 (209)
+.++.||..-|. +++++.-||+ .+|+++++|++.+++.-..
T Consensus 296 ~~~~~ihlNDtH---palai~ElmR~L~d~~gl~wd~Aw~iv~~~~~y 340 (794)
T TIGR02093 296 PKKVAIQLNDTH---PALAIPELMRLLIDEEGMDWDEAWDITTKTFAY 340 (794)
T ss_pred CcceEEEecCCc---hHHHHHHHHHHHHHhcCCCHHHHHHHHHhheec
Confidence 368999999987 5888888886 3699999999999987554
No 139
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=20.58 E-value=1.4e+02 Score=21.13 Aligned_cols=31 Identities=10% Similarity=0.146 Sum_probs=21.4
Q ss_pred CcEEEEcCCCCchhHHHHHHH--HHHhCCCCHH
Q psy1264 86 QNISHFSLAGMSRSVTVTIAY--IMSVTSLNWK 116 (209)
Q Consensus 86 ~~VLVHC~~G~sRS~tvv~AY--Lm~~~~~~~~ 116 (209)
.+||+=|-.|++-|-.+.... +++..|++.+
T Consensus 2 ~KIL~aCG~GvgSS~~ik~kve~~l~~~gi~~~ 34 (93)
T COG3414 2 IKILAACGNGVGSSTMIKMKVEEVLKELGIDVD 34 (93)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHHcCCCce
Confidence 479999999999885555442 4555666544
No 140
>KOG3248|consensus
Probab=20.53 E-value=3.8e+02 Score=23.84 Aligned_cols=51 Identities=16% Similarity=0.080 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHhhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCCCCH
Q psy1264 113 LNWKEALKVVRVGRAIANPNNGFQKQLQDFECFRLADERRRLRERFPSRALASMDE 168 (209)
Q Consensus 113 ~~~~~A~~~vr~~Rp~i~pn~~f~~qL~~~e~~~l~~~~~~~~~~~~~~~~~~~~~ 168 (209)
+.-..|+..+-.+|=. +..=.+|-+.|| +..++|+-..+.||.|+..++.-
T Consensus 216 lKeSAaiNqiLGrRWH---~LSrEEQAKYyE--lArKerqlH~qlYP~WSARdNYg 266 (421)
T KOG3248|consen 216 LKESAAINQILGRRWH---ALSREEQAKYYE--LARKERQLHMQLYPGWSARDNYG 266 (421)
T ss_pred hhhHHHHHHHHhHHHh---hhhHHHHHHHHH--HHHHHHHHHHHhcCCcchhhhhh
Confidence 3334455555555533 223346777777 67778888999999998875544
No 141
>TIGR01391 dnaG DNA primase, catalytic core. This protein contains a CHC2 zinc finger (Pfam:PF01807) and a Toprim domain (Pfam:PF01751).
Probab=20.33 E-value=1.1e+02 Score=27.53 Aligned_cols=37 Identities=11% Similarity=0.223 Sum_probs=27.5
Q ss_pred EEEcCCCCchhHHHHHHHHHHhCCCCHHHHHHHHHhhCC
Q psy1264 89 SHFSLAGMSRSVTVTIAYIMSVTSLNWKEALKVVRVGRA 127 (209)
Q Consensus 89 LVHC~~G~sRS~tvv~AYLm~~~~~~~~~A~~~vr~~Rp 127 (209)
..||.+ -+..+- ++.++|...|+++.+|++.+...-.
T Consensus 55 ~~~Cf~-Cg~~Gd-~i~fv~~~~~~sf~eA~~~La~~~g 91 (415)
T TIGR01391 55 FYHCFG-CGAGGD-AIKFLMEIEGISFVEAVEELAKRAG 91 (415)
T ss_pred cEEECC-CCCCCC-HHHHHHHHhCCCHHHHHHHHHHHcC
Confidence 478863 233443 4789999999999999999977543
Done!