RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1264
(209 letters)
>gnl|CDD|238073 cd00127, DSPc, Dual specificity phosphatases (DSP); Ser/Thr and Tyr
protein phosphatases. Structurally similar to
tyrosine-specific phosphatases but with a shallower
active site cleft and a distinctive active site
signature motif, HCxxGxxR. Characterized as VHR- or
Cdc25-like.
Length = 139
Score = 98.4 bits (246), Expect = 2e-26
Identities = 42/154 (27%), Positives = 65/154 (42%), Gaps = 46/154 (29%)
Query: 18 IVLPGLYVGNYRDSKDAVQLDRFNITHIVAIHDSARKIHPVSKTKASQPANHYQVDPRGG 77
+ PGLY+G+Y + D L + ITH++ + +
Sbjct: 4 EITPGLYLGSYPAASDKELLKKLGITHVLNVAKEVPN------------------ENLFL 45
Query: 78 PDQVYLS-------EQNIS-HFS--------------------LAGMSRSVTVTIAYIMS 109
D YL Q+IS +F LAG+SRS T+ IAY+M
Sbjct: 46 SDFNYLYVPILDLPSQDISKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSATLVIAYLMK 105
Query: 110 VTSLNWKEALKVVRVGRAIANPNNGFQKQLQDFE 143
L+ +EA + V+ R I +PN GF +QL+++E
Sbjct: 106 TLGLSLREAYEFVKSRRPIISPNAGFMRQLKEYE 139
>gnl|CDD|214551 smart00195, DSPc, Dual specificity phosphatase, catalytic domain.
Length = 138
Score = 85.0 bits (211), Expect = 3e-21
Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 16/137 (11%)
Query: 19 VLPGLYVGNYRDSKDAVQLDRFNITHIVAIHDSARKIHPVSKTKASQPAN-HYQVDPRGG 77
+LP LY+G+Y D+ + L + ITH++ + + + T P + + +
Sbjct: 4 ILPHLYLGSYSDALNLALLKKLGITHVINVTNEVPNYNGSDFTYLGVPIDDNTETKISPY 63
Query: 78 PDQVYLSEQNISHFS-----------LAGMSRSVTVTIAYIMSVTSLNWKEALKVVRVGR 126
+ + AG+SRS T+ IAY+M +++ +A V+ R
Sbjct: 64 FPEAV----EFIEDAESKGGKVLVHCQAGVSRSATLIIAYLMKTRNMSLNDAYDFVKDRR 119
Query: 127 AIANPNNGFQKQLQDFE 143
I +PN GF +QL ++E
Sbjct: 120 PIISPNFGFLRQLIEYE 136
>gnl|CDD|216117 pfam00782, DSPc, Dual specificity phosphatase, catalytic domain.
Ser/Thr and Tyr protein phosphatases. The enzyme's
tertiary fold is highly similar to that of
tyrosine-specific phosphatases, except for a
"recognition" region.
Length = 131
Score = 62.3 bits (152), Expect = 1e-12
Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 20/135 (14%)
Query: 23 LYVGNYRDSKDAVQLDRFNITHIVAIHDSARKIHPVSKTKASQPANHYQV-DPRGGPDQV 81
LY+G+Y + A L++ ITH++ + + P S + V D
Sbjct: 1 LYLGSYPTASKA-FLEKLGITHVI----NVTREVPNSNLNSGILYLGIPVEDNHETNISK 55
Query: 82 YLSEQN--IS-----------HFSLAGMSRSVTVTIAYIMSVTSLNWKEALKVVRVGRAI 128
YL E I H AG+SRS T+ IAY+M +L+ EA V+ R I
Sbjct: 56 YLPEAVEFIDDAIQKGGKVLVH-CQAGISRSATLIIAYLMKTRNLSLNEAYSFVKERRPI 114
Query: 129 ANPNNGFQKQLQDFE 143
+PN GF++QL ++E
Sbjct: 115 ISPNFGFKRQLLEYE 129
>gnl|CDD|225297 COG2453, CDC14, Predicted protein-tyrosine phosphatase [Signal
transduction mechanisms].
Length = 180
Score = 31.3 bits (71), Expect = 0.20
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 94 AGMSRSVTVTIAYIMSVTSLNWK-EALKVVRVGRAIANPNNGFQKQLQDFECFR 146
G+ RS TV AY+M L+ EA+ V R R A + E FR
Sbjct: 114 GGIGRSGTVIAAYLMLYGGLSLADEAIAVKRRRRPGAVVTEIQHLFELEQELFR 167
>gnl|CDD|226988 COG4641, COG4641, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 373
Score = 29.3 bits (66), Expect = 1.6
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 7 QIKDWKKDVKRIVLPGLYVGNYRDSKDAVQLDRFNITHIVAIHDSARKI 55
I D+ KD+++ PG + Y+DSKD + ++ + H D ++I
Sbjct: 290 LITDYWKDLEKFFKPGKDIIVYQDSKDLKEKLKYLLNHP----DERKEI 334
>gnl|CDD|236691 PRK10426, PRK10426, alpha-glucosidase; Provisional.
Length = 635
Score = 28.0 bits (63), Expect = 4.4
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 80 QVYLSEQNISHFSLAGMSRSVTVTIAYIMSVTSLNWKEALKVVR 123
Q + I+HF A M+R T Y+ + + K L V+R
Sbjct: 502 QFDSDAETIAHF--ARMTRVFTTLKPYLKELVAEAAKTGLPVMR 543
>gnl|CDD|178370 PLN02771, PLN02771, carbamoyl-phosphate synthase
(glutamine-hydrolyzing).
Length = 415
Score = 28.0 bits (62), Expect = 4.4
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 56 HPVSKTKASQ----PANH-YQVDPRGGPDQVYLSEQNISHFSLAGMS 97
HPV + + NH Y VDP P+ V ++ N++ S AG++
Sbjct: 343 HPVRNNRTGRVEISAQNHNYAVDPASLPEGVEVTHVNLNDGSCAGLA 389
>gnl|CDD|215273 PLN02495, PLN02495, oxidoreductase, acting on the CH-CH group of
donors.
Length = 385
Score = 27.5 bits (61), Expect = 5.0
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 11/76 (14%)
Query: 105 AYIMSVTSLNWKEALKVV-RVGRAIANPNNGFQKQLQDFECFRLADER---------RRL 154
I SL+ + + V R R A N + ++ ++ L +R ++L
Sbjct: 48 GVIAKTVSLDASKVINVTPRYARLRAGANGSAKGRVIGWQNIELISDRPFETMLAEFKQL 107
Query: 155 RERFPSRAL-ASMDEE 169
+E +P R L AS+ EE
Sbjct: 108 KEEYPDRILIASIMEE 123
>gnl|CDD|237253 PRK12898, secA, preprotein translocase subunit SecA; Reviewed.
Length = 656
Score = 27.7 bits (62), Expect = 5.9
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 150 ERRRLRERFPSRALASMDEEQCQLLLIAYQG 180
ER R R RAL DE+ +LL A +G
Sbjct: 628 ERLHARAR---RALLHADEQLDKLLAFAGRG 655
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.135 0.406
Gapped
Lambda K H
0.267 0.0743 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,541,590
Number of extensions: 969718
Number of successful extensions: 781
Number of sequences better than 10.0: 1
Number of HSP's gapped: 779
Number of HSP's successfully gapped: 14
Length of query: 209
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 116
Effective length of database: 6,812,680
Effective search space: 790270880
Effective search space used: 790270880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (25.7 bits)