BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12642
(201 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 34.3 bits (77), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 2 APIVYIIGCFHFFR--YEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTE 59
A Y +G ++ + Y+EA+E+ + +++D N A + EAI+ +
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 60 YLKKFMTDQETWQELCDLYLSEGDYAKAV 88
L+ + E W L + Y +GDY +A+
Sbjct: 69 ALELDPNNAEAWYNLGNAYYKQGDYDEAI 97
Score = 30.4 bits (67), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 69 ETWQELCDLYLSEGDYAKAVFCMEEXXXXXXXXXXXXQRYADILYTQGGLENIELAISHY 128
E W L + Y +GDY +A+ ++ + Y QG + + AI +Y
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG---DYDEAIEYY 66
Query: 129 LMAINLNEKNIRALYGLALSCHQ 151
A+ L+ N A Y L + ++
Sbjct: 67 QKALELDPNNAEAWYNLGNAYYK 89
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 56 ELTEYLKKFM----TDQETWQELCDLYLSEGDYAKAVFCMEEXXXXXXXXXXXXQRYADI 111
E EY +K + + E W L + Y +GDY +A+ ++ +
Sbjct: 27 EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86
Query: 112 LYTQGGLENIELAISHYLMAINLNEKNIRA 141
Y QG + + AI +Y A+ L+ N A
Sbjct: 87 YYKQG---DYDEAIEYYQKALELDPNNAEA 113
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 33.9 bits (76), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 69 ETWQELCDLYLSEGDYAKAVFCMEEXXXXXXXXXXXXQRYADILYTQGGLENIELAISHY 128
E W+ L + Y +GDY KA+ ++ + Y QG + + AI +Y
Sbjct: 10 EAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQG---DYQKAIEYY 66
Query: 129 LMAINLNEKNIRALY 143
A+ L+ N +A Y
Sbjct: 67 QKALELDPNNAKAWY 81
Score = 30.4 bits (67), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 70 TWQELCDLYLSEGDYAKAVFCMEEXXXXXXXXXXXXQRYADILYTQGGLENIELAISHYL 129
W L + Y +GDY KA+ ++ R + Y QG + + AI Y
Sbjct: 45 AWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQG---DYQKAIEDYQ 101
Query: 130 MAINLNEKNIRA 141
A+ L+ N +A
Sbjct: 102 KALELDPNNAKA 113
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 69 ETWQELCDLYLSEGDYAKAVFCMEEXXXXXXXXXXXXQRYADILYTQGGLENIELAISHY 128
E W L + Y +GDY +A+ ++ + Y QG + + AI +Y
Sbjct: 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG---DYDEAIEYY 58
Query: 129 LMAINLNEKNIRALYGLALSCHQ 151
A+ L+ ++ A Y L + ++
Sbjct: 59 QKALELDPRSAEAWYNLGNAYYK 81
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 69 ETWQELCDLYLSEGDYAKAVFCMEEXXXXXXXXXXXXQRYADILYTQGGLENIELAISHY 128
E W L + Y +GDY +A+ ++ + Y QG + + AI +Y
Sbjct: 36 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG---DYDEAIEYY 92
Query: 129 LMAINLNEKNIRALYGLALSCHQ 151
A+ L+ ++ A Y L + ++
Sbjct: 93 QKALELDPRSAEAWYNLGNAYYK 115
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 34/73 (46%)
Query: 16 YEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELC 75
Y+EA+E+ + +++D + A + EAI+ + L+ E W L
Sbjct: 51 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG 110
Query: 76 DLYLSEGDYAKAV 88
+ Y +GDY +A+
Sbjct: 111 NAYYKQGDYDEAI 123
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Query: 69 ETWQELCDLYLSEGDYAKAVFCMEEXXXXXXXXXXXXQRYADILYTQGGLENIELAISHY 128
E W L + Y +GDY +A+ ++ + Y QG + + AI +Y
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQG---DYDEAIEYY 66
Query: 129 LMAINLNEKNIRALYGLALSCHQ 151
A+ L N A Y L + ++
Sbjct: 67 QKALELYPNNAEAWYNLGNAYYK 89
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
Query: 52 EAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEEXXXXXXXXXXXXQRYADI 111
EAI+ + L+ + + E W L + Y +GDY +A+ ++ +
Sbjct: 27 EAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNA 86
Query: 112 LYTQGGLENIELAISHYLMAINLNEKNIRA 141
Y QG + + AI +Y A+ L N A
Sbjct: 87 YYKQG---DYDEAIEYYQKALELYPNNAEA 113
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 69 ETWQELCDLYLSEGDYAKAVFCMEEXXXXXXXXXXXXQRYADILYTQGGLENIELAISHY 128
E W L + Y +GDY +A+ ++ + Y QG + + AI +Y
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG---DYDEAIEYY 66
Query: 129 LMAINLNEKNIRA 141
A+ L+ N A
Sbjct: 67 QKALELDPNNAEA 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,076,346
Number of Sequences: 62578
Number of extensions: 168855
Number of successful extensions: 618
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 601
Number of HSP's gapped (non-prelim): 23
length of query: 201
length of database: 14,973,337
effective HSP length: 94
effective length of query: 107
effective length of database: 9,091,005
effective search space: 972737535
effective search space used: 972737535
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)