Query psy12642
Match_columns 201
No_of_seqs 295 out of 3354
Neff 10.7
Searched_HMMs 46136
Date Fri Aug 16 15:50:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12642.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12642hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3060|consensus 99.9 1E-24 2.2E-29 153.9 22.0 198 4-201 90-289 (289)
2 KOG4626|consensus 99.9 1.1E-22 2.4E-27 159.3 19.3 189 10-201 296-486 (966)
3 KOG4626|consensus 99.9 5.2E-23 1.1E-27 161.1 15.7 188 10-200 228-417 (966)
4 TIGR00990 3a0801s09 mitochondr 99.9 2.2E-20 4.8E-25 153.9 24.4 157 5-164 336-492 (615)
5 KOG1126|consensus 99.9 1.2E-21 2.5E-26 154.1 14.6 192 3-197 424-617 (638)
6 COG3063 PilF Tfp pilus assembl 99.9 5.7E-20 1.2E-24 128.5 19.3 160 3-165 38-199 (250)
7 KOG1155|consensus 99.9 1.3E-19 2.8E-24 137.8 20.6 156 9-167 339-494 (559)
8 TIGR00990 3a0801s09 mitochondr 99.9 2.3E-19 4.9E-24 148.0 22.8 185 13-200 307-496 (615)
9 PRK15359 type III secretion sy 99.8 2.1E-19 4.6E-24 121.5 16.0 128 20-153 13-140 (144)
10 KOG1155|consensus 99.8 1.6E-19 3.4E-24 137.3 16.6 186 8-196 270-491 (559)
11 TIGR02521 type_IV_pilW type IV 99.8 1.6E-18 3.4E-23 125.6 20.7 159 4-165 35-195 (234)
12 PRK12370 invasion protein regu 99.8 2.4E-18 5.2E-23 140.1 21.2 143 16-161 320-463 (553)
13 PRK12370 invasion protein regu 99.8 4.4E-18 9.6E-23 138.5 22.5 148 4-154 342-490 (553)
14 KOG1125|consensus 99.8 4.8E-19 1E-23 137.7 14.9 156 4-162 289-521 (579)
15 KOG1126|consensus 99.8 2.9E-19 6.2E-24 140.8 13.0 150 8-160 463-612 (638)
16 PRK09782 bacteriophage N4 rece 99.8 1.2E-17 2.5E-22 142.2 22.4 157 6-166 548-704 (987)
17 PRK15174 Vi polysaccharide exp 99.8 1.5E-17 3.3E-22 137.6 21.7 155 7-164 219-377 (656)
18 TIGR03302 OM_YfiO outer membra 99.8 1.2E-17 2.5E-22 122.3 17.5 156 4-162 37-226 (235)
19 TIGR02521 type_IV_pilW type IV 99.8 4.7E-17 1E-21 117.9 20.2 153 5-160 70-224 (234)
20 PRK10370 formate-dependent nit 99.8 1.8E-17 3.8E-22 117.8 16.8 121 15-138 54-177 (198)
21 PRK15174 Vi polysaccharide exp 99.8 6.5E-17 1.4E-21 133.9 22.2 156 4-163 46-201 (656)
22 PRK11447 cellulose synthase su 99.8 8.4E-17 1.8E-21 140.8 23.2 149 7-159 276-438 (1157)
23 TIGR02552 LcrH_SycD type III s 99.8 4.4E-17 9.6E-22 109.2 16.0 120 21-143 4-123 (135)
24 PRK11788 tetratricopeptide rep 99.8 1.9E-16 4.1E-21 124.0 22.0 155 6-163 113-273 (389)
25 PRK11447 cellulose synthase su 99.8 2E-16 4.3E-21 138.5 24.3 155 7-164 468-696 (1157)
26 PRK11189 lipoprotein NlpI; Pro 99.8 4.4E-16 9.5E-21 117.6 22.8 96 7-102 71-166 (296)
27 TIGR02917 PEP_TPR_lipo putativ 99.8 2.1E-16 4.5E-21 134.6 23.6 187 6-197 709-897 (899)
28 PRK09782 bacteriophage N4 rece 99.8 8.8E-17 1.9E-21 136.9 20.7 150 11-164 587-736 (987)
29 TIGR02917 PEP_TPR_lipo putativ 99.8 3.2E-16 7E-21 133.4 24.2 155 6-163 471-625 (899)
30 PRK11189 lipoprotein NlpI; Pro 99.8 2.8E-16 6.1E-21 118.6 20.2 149 10-162 36-188 (296)
31 PF13429 TPR_15: Tetratricopep 99.8 1.5E-17 3.2E-22 124.8 12.8 153 6-161 116-270 (280)
32 PRK11788 tetratricopeptide rep 99.8 7E-16 1.5E-20 120.8 22.7 152 37-191 110-269 (389)
33 KOG0547|consensus 99.8 1.1E-16 2.4E-21 122.7 16.3 154 10-166 336-489 (606)
34 PRK10370 formate-dependent nit 99.7 2.9E-16 6.4E-21 111.5 17.3 149 3-165 19-170 (198)
35 PRK15359 type III secretion sy 99.7 1.1E-16 2.4E-21 108.2 14.0 110 6-115 30-139 (144)
36 KOG0547|consensus 99.7 1.3E-15 2.8E-20 117.0 17.0 157 4-160 364-558 (606)
37 PLN02789 farnesyltranstransfer 99.7 2.2E-15 4.7E-20 114.2 16.9 141 10-153 47-190 (320)
38 KOG1173|consensus 99.7 4.4E-15 9.6E-20 115.7 18.0 127 3-132 315-441 (611)
39 PRK15179 Vi polysaccharide bio 99.7 1.1E-14 2.3E-19 120.2 20.7 150 18-170 70-219 (694)
40 PRK15363 pathogenicity island 99.7 5.1E-15 1.1E-19 99.2 15.3 109 26-137 26-135 (157)
41 PRK10049 pgaA outer membrane p 99.7 9.2E-15 2E-19 123.3 20.3 148 10-161 25-172 (765)
42 COG3063 PilF Tfp pilus assembl 99.7 9.9E-15 2.1E-19 102.4 16.9 154 2-158 71-226 (250)
43 KOG0553|consensus 99.7 1.8E-15 3.9E-20 109.9 13.5 117 37-156 84-200 (304)
44 KOG1173|consensus 99.7 3.2E-15 6.9E-20 116.5 15.0 158 2-162 348-512 (611)
45 KOG0553|consensus 99.7 1.7E-15 3.6E-20 110.1 12.2 108 9-116 90-197 (304)
46 KOG0624|consensus 99.7 3.6E-14 7.8E-19 105.1 18.4 155 6-163 44-213 (504)
47 KOG1174|consensus 99.7 1.8E-14 4E-19 108.8 16.9 197 2-200 302-500 (564)
48 PF13429 TPR_15: Tetratricopep 99.7 6.9E-16 1.5E-20 115.8 9.5 128 4-134 150-277 (280)
49 PRK10049 pgaA outer membrane p 99.7 3E-14 6.6E-19 120.2 20.2 157 6-165 278-453 (765)
50 COG5010 TadD Flp pilus assembl 99.7 1.9E-14 4.2E-19 102.7 16.1 152 8-162 74-225 (257)
51 PLN02789 farnesyltranstransfer 99.6 1.8E-14 3.9E-19 109.2 16.6 144 8-151 79-229 (320)
52 PRK15179 Vi polysaccharide bio 99.6 2.3E-14 4.9E-19 118.2 17.9 136 4-142 90-225 (694)
53 TIGR03302 OM_YfiO outer membra 99.6 5.5E-14 1.2E-18 102.9 18.2 161 29-192 28-224 (235)
54 PLN03088 SGT1, suppressor of 99.6 2.2E-14 4.7E-19 110.8 16.1 114 37-153 5-118 (356)
55 KOG2076|consensus 99.6 2E-13 4.3E-18 111.4 22.0 153 7-162 146-303 (895)
56 PLN03088 SGT1, suppressor of 99.6 4.2E-14 9.1E-19 109.2 15.1 111 6-116 8-118 (356)
57 TIGR02552 LcrH_SycD type III s 99.6 4.3E-14 9.3E-19 94.6 13.2 102 4-105 21-122 (135)
58 PRK10747 putative protoheme IX 99.6 6.8E-13 1.5E-17 104.3 21.0 184 10-199 163-389 (398)
59 COG4783 Putative Zn-dependent 99.6 3.5E-13 7.6E-18 103.8 18.5 129 31-162 303-431 (484)
60 PRK14574 hmsH outer membrane p 99.6 4.4E-13 9.6E-18 112.6 20.6 157 4-164 38-194 (822)
61 KOG2003|consensus 99.6 1.8E-13 4E-18 104.9 16.2 153 11-163 501-684 (840)
62 COG2956 Predicted N-acetylgluc 99.6 9.3E-13 2E-17 96.8 19.0 155 6-163 113-273 (389)
63 PRK15363 pathogenicity island 99.6 1.2E-13 2.6E-18 92.6 13.3 97 5-101 40-136 (157)
64 KOG0550|consensus 99.6 1E-13 2.3E-18 104.7 14.0 157 7-166 176-348 (486)
65 KOG3060|consensus 99.6 1.4E-12 2.9E-17 93.0 18.7 149 7-158 59-207 (289)
66 KOG0548|consensus 99.6 3.5E-13 7.6E-18 104.7 16.6 141 9-152 307-473 (539)
67 cd05804 StaR_like StaR_like; a 99.6 3.4E-13 7.4E-18 104.4 16.8 158 4-165 47-212 (355)
68 COG4783 Putative Zn-dependent 99.6 7.4E-13 1.6E-17 102.0 17.8 144 5-151 311-454 (484)
69 KOG1129|consensus 99.6 2.3E-14 4.9E-19 105.6 9.1 148 10-160 300-450 (478)
70 KOG1129|consensus 99.6 1.4E-13 3E-18 101.5 13.0 152 6-161 229-380 (478)
71 COG5010 TadD Flp pilus assembl 99.5 8.3E-13 1.8E-17 94.5 15.9 149 13-165 46-194 (257)
72 KOG2002|consensus 99.5 1.8E-12 3.8E-17 106.8 18.5 134 17-153 253-390 (1018)
73 TIGR00540 hemY_coli hemY prote 99.5 6.7E-12 1.5E-16 99.0 21.1 190 6-198 159-397 (409)
74 TIGR02795 tol_pal_ybgF tol-pal 99.5 1.3E-12 2.7E-17 85.3 14.1 105 35-142 3-113 (119)
75 KOG1156|consensus 99.5 9.1E-13 2E-17 104.4 15.2 156 4-162 11-166 (700)
76 KOG2002|consensus 99.5 3E-12 6.6E-17 105.4 18.7 185 16-200 146-336 (1018)
77 PRK10866 outer membrane biogen 99.5 7.6E-12 1.7E-16 91.6 18.6 152 6-160 38-233 (243)
78 KOG1840|consensus 99.5 3.7E-12 8.1E-17 101.1 18.0 182 6-190 205-428 (508)
79 COG4235 Cytochrome c biogenesi 99.5 4E-12 8.6E-17 93.1 16.7 120 16-138 138-260 (287)
80 PRK14574 hmsH outer membrane p 99.5 4.4E-12 9.5E-17 106.7 19.2 152 7-162 75-226 (822)
81 KOG1125|consensus 99.5 4.2E-13 9E-18 105.1 12.2 138 16-156 410-559 (579)
82 cd00189 TPR Tetratricopeptide 99.5 1.1E-12 2.5E-17 81.2 11.9 99 36-137 2-100 (100)
83 KOG2076|consensus 99.5 8.7E-12 1.9E-16 102.1 19.6 129 34-165 139-267 (895)
84 CHL00033 ycf3 photosystem I as 99.5 4.2E-12 9.2E-17 88.2 15.5 127 10-139 9-154 (168)
85 PF13525 YfiO: Outer membrane 99.5 6E-12 1.3E-16 90.0 16.6 150 6-158 11-197 (203)
86 PF09976 TPR_21: Tetratricopep 99.5 5.4E-12 1.2E-16 85.5 15.3 121 8-132 19-145 (145)
87 COG2956 Predicted N-acetylgluc 99.5 2.5E-11 5.4E-16 89.5 19.3 181 5-189 40-267 (389)
88 COG4235 Cytochrome c biogenesi 99.5 2E-12 4.4E-17 94.6 13.4 111 50-160 138-248 (287)
89 KOG0495|consensus 99.5 1.1E-11 2.4E-16 98.7 18.2 156 8-166 592-780 (913)
90 KOG0548|consensus 99.5 1.6E-11 3.5E-16 95.6 18.8 145 16-163 280-450 (539)
91 PRK02603 photosystem I assembl 99.5 4.8E-12 1E-16 88.3 14.5 105 31-138 32-153 (172)
92 cd05804 StaR_like StaR_like; a 99.5 2.4E-11 5.3E-16 94.1 19.9 161 2-166 8-175 (355)
93 TIGR02795 tol_pal_ybgF tol-pal 99.4 6.2E-12 1.3E-16 82.0 13.2 103 4-106 6-114 (119)
94 PF13414 TPR_11: TPR repeat; P 99.4 8.5E-13 1.8E-17 77.9 8.0 67 33-99 2-69 (69)
95 KOG0495|consensus 99.4 2.7E-11 5.9E-16 96.6 18.0 146 13-161 563-741 (913)
96 KOG4162|consensus 99.4 6.2E-12 1.3E-16 101.5 14.3 122 36-160 652-775 (799)
97 PF12895 Apc3: Anaphase-promot 99.4 8.1E-13 1.8E-17 81.1 7.4 80 13-93 2-83 (84)
98 PRK15331 chaperone protein Sic 99.4 1.3E-11 2.8E-16 83.2 13.6 107 30-140 33-139 (165)
99 PF13414 TPR_11: TPR repeat; P 99.4 1.3E-12 2.9E-17 77.0 7.8 68 67-136 2-69 (69)
100 TIGR00540 hemY_coli hemY prote 99.4 5E-10 1.1E-14 88.5 24.0 126 8-136 92-218 (409)
101 KOG1127|consensus 99.4 7.1E-12 1.5E-16 103.6 13.7 151 10-163 502-654 (1238)
102 cd00189 TPR Tetratricopeptide 99.4 8.5E-12 1.8E-16 77.2 11.2 98 3-100 3-100 (100)
103 PRK10153 DNA-binding transcrip 99.4 2.9E-11 6.3E-16 97.3 16.6 124 13-140 355-488 (517)
104 KOG0624|consensus 99.4 1.6E-10 3.4E-15 86.1 19.1 153 8-163 80-247 (504)
105 PF12895 Apc3: Anaphase-promot 99.4 1.9E-12 4E-17 79.5 7.6 81 47-131 2-84 (84)
106 PF13432 TPR_16: Tetratricopep 99.4 2E-12 4.2E-17 75.4 7.3 62 40-101 3-64 (65)
107 KOG1174|consensus 99.4 6.1E-11 1.3E-15 90.1 16.2 151 7-160 239-389 (564)
108 PRK10803 tol-pal system protei 99.4 3.9E-11 8.6E-16 88.6 14.9 106 33-141 141-253 (263)
109 PF04733 Coatomer_E: Coatomer 99.4 1.4E-11 3.1E-16 92.4 12.4 146 5-158 107-254 (290)
110 KOG1128|consensus 99.4 9.2E-12 2E-16 100.0 11.7 146 6-161 430-575 (777)
111 PF13432 TPR_16: Tetratricopep 99.4 4.1E-12 8.9E-17 74.0 7.0 64 73-139 2-65 (65)
112 PRK10747 putative protoheme IX 99.4 1.3E-10 2.8E-15 91.5 17.5 140 17-163 246-385 (398)
113 PRK10803 tol-pal system protei 99.4 9.7E-11 2.1E-15 86.5 15.7 90 13-102 156-251 (263)
114 KOG4162|consensus 99.4 3.7E-11 8.1E-16 97.1 14.2 132 5-139 655-788 (799)
115 KOG0543|consensus 99.3 7.7E-11 1.7E-15 89.4 14.5 119 37-158 211-344 (397)
116 KOG1840|consensus 99.3 2.2E-10 4.7E-15 91.2 17.6 182 6-190 247-469 (508)
117 PRK11906 transcriptional regul 99.3 2.6E-10 5.6E-15 88.5 17.2 123 15-140 273-407 (458)
118 KOG0550|consensus 99.3 4.3E-11 9.4E-16 90.7 12.0 131 4-137 207-353 (486)
119 KOG2003|consensus 99.3 7.3E-10 1.6E-14 85.5 18.5 144 8-154 532-709 (840)
120 PRK02603 photosystem I assembl 99.3 1.7E-10 3.7E-15 80.4 14.1 97 5-101 40-153 (172)
121 PF09295 ChAPs: ChAPs (Chs5p-A 99.3 2.2E-10 4.8E-15 88.8 15.8 115 10-130 179-293 (395)
122 PF12569 NARP1: NMDA receptor- 99.3 8E-10 1.7E-14 88.8 19.3 154 7-163 11-252 (517)
123 CHL00033 ycf3 photosystem I as 99.3 3E-10 6.6E-15 78.9 15.0 142 48-193 13-159 (168)
124 PRK15331 chaperone protein Sic 99.3 1E-10 2.2E-15 79.0 11.6 98 5-103 42-139 (165)
125 PRK14720 transcript cleavage f 99.3 1.9E-10 4.1E-15 96.6 15.5 133 29-167 26-177 (906)
126 KOG0543|consensus 99.3 1.8E-10 3.9E-15 87.5 13.7 126 8-136 216-357 (397)
127 PRK14720 transcript cleavage f 99.3 7.2E-10 1.6E-14 93.2 18.5 189 6-200 37-286 (906)
128 PF09976 TPR_21: Tetratricopep 99.3 1.6E-09 3.4E-14 73.5 16.1 117 44-164 21-143 (145)
129 PF09295 ChAPs: ChAPs (Chs5p-A 99.3 3.9E-10 8.4E-15 87.5 14.7 116 39-160 174-289 (395)
130 PF14559 TPR_19: Tetratricopep 99.2 5.2E-11 1.1E-15 69.9 7.5 64 46-109 3-66 (68)
131 PF14559 TPR_19: Tetratricopep 99.2 4.5E-11 9.8E-16 70.2 6.7 68 10-77 1-68 (68)
132 COG1729 Uncharacterized protei 99.2 5.4E-10 1.2E-14 81.1 12.9 104 37-143 144-253 (262)
133 PF13371 TPR_9: Tetratricopept 99.2 2E-10 4.3E-15 68.4 8.5 65 42-106 3-67 (73)
134 PF13371 TPR_9: Tetratricopept 99.2 2.3E-10 4.9E-15 68.1 7.9 71 74-147 1-71 (73)
135 PRK10866 outer membrane biogen 99.2 1.2E-08 2.6E-13 74.9 18.3 108 32-139 30-158 (243)
136 PF13512 TPR_18: Tetratricopep 99.2 2.2E-09 4.8E-14 71.0 12.6 109 33-141 9-135 (142)
137 KOG1156|consensus 99.2 8.7E-09 1.9E-13 82.3 18.0 150 8-160 49-206 (700)
138 COG1729 Uncharacterized protei 99.2 2E-09 4.4E-14 78.2 13.4 102 6-107 147-254 (262)
139 PF12688 TPR_5: Tetratrico pep 99.2 2.8E-09 6.1E-14 69.2 12.8 96 35-133 2-103 (120)
140 PF04733 Coatomer_E: Coatomer 99.2 1.2E-09 2.5E-14 82.1 12.6 134 5-141 136-272 (290)
141 KOG1128|consensus 99.2 3E-10 6.5E-15 91.5 9.8 118 38-158 489-606 (777)
142 KOG1127|consensus 99.1 3.6E-09 7.8E-14 88.1 15.5 147 13-162 471-619 (1238)
143 KOG3785|consensus 99.1 2.8E-09 6.1E-14 80.0 12.8 152 9-163 31-209 (557)
144 PF13525 YfiO: Outer membrane 99.1 4.7E-08 1E-12 70.0 18.3 107 33-139 4-124 (203)
145 PLN03218 maturation of RBCL 1; 99.1 1.1E-07 2.4E-12 82.7 23.6 149 7-160 549-705 (1060)
146 KOG4234|consensus 99.1 3.4E-09 7.4E-14 73.5 11.6 120 35-157 96-220 (271)
147 PLN03218 maturation of RBCL 1; 99.1 8.4E-08 1.8E-12 83.4 22.2 149 6-158 478-633 (1060)
148 COG4700 Uncharacterized protei 99.1 3.1E-07 6.6E-12 63.3 20.0 145 11-160 67-214 (251)
149 COG4105 ComL DNA uptake lipopr 99.1 1.1E-07 2.5E-12 68.6 18.8 150 7-159 41-224 (254)
150 PLN03081 pentatricopeptide (PP 99.1 1.6E-08 3.5E-13 85.2 16.9 150 5-160 396-549 (697)
151 PF13512 TPR_18: Tetratricopep 99.1 8.8E-09 1.9E-13 68.2 11.8 98 7-104 17-135 (142)
152 KOG2376|consensus 99.0 1.7E-07 3.7E-12 74.5 20.0 151 6-163 18-199 (652)
153 KOG4340|consensus 99.0 1.3E-08 2.8E-13 74.9 12.8 151 7-160 17-199 (459)
154 PLN03077 Protein ECB2; Provisi 99.0 3.6E-08 7.7E-13 85.0 17.3 150 5-160 559-712 (857)
155 PF14938 SNAP: Soluble NSF att 99.0 2.6E-08 5.6E-13 74.9 14.4 179 7-189 42-253 (282)
156 PRK10153 DNA-binding transcrip 99.0 4.6E-08 9.9E-13 79.1 16.6 133 29-165 332-479 (517)
157 PF12688 TPR_5: Tetratrico pep 99.0 3.5E-08 7.5E-13 64.2 13.0 93 4-96 5-103 (120)
158 KOG4234|consensus 99.0 1.6E-08 3.6E-13 70.2 11.7 97 10-106 105-206 (271)
159 PLN03081 pentatricopeptide (PP 99.0 3.6E-08 7.8E-13 83.1 16.4 147 5-158 295-445 (697)
160 PF12569 NARP1: NMDA receptor- 99.0 8.5E-08 1.8E-12 77.3 17.5 123 35-160 195-326 (517)
161 KOG4648|consensus 99.0 3.6E-09 7.9E-14 79.1 8.6 103 37-142 100-202 (536)
162 KOG4648|consensus 99.0 3.8E-09 8.2E-14 79.0 8.3 105 7-111 104-208 (536)
163 COG3071 HemY Uncharacterized e 99.0 6.6E-08 1.4E-12 73.4 14.8 120 32-158 261-380 (400)
164 PRK11906 transcriptional regul 99.0 3.5E-08 7.5E-13 76.9 13.6 118 13-133 317-435 (458)
165 KOG3785|consensus 98.9 7.7E-08 1.7E-12 72.4 14.3 150 6-158 63-238 (557)
166 COG3071 HemY Uncharacterized e 98.9 4.8E-07 1E-11 68.8 18.6 178 7-190 160-380 (400)
167 PLN03098 LPA1 LOW PSII ACCUMUL 98.9 8.8E-09 1.9E-13 80.1 9.5 68 30-97 71-141 (453)
168 PF05843 Suf: Suppressor of fo 98.9 1.5E-07 3.2E-12 70.7 15.0 136 2-140 3-142 (280)
169 PLN03098 LPA1 LOW PSII ACCUMUL 98.9 1.5E-08 3.1E-13 78.9 9.8 69 63-134 70-141 (453)
170 KOG2376|consensus 98.9 1.9E-07 4.1E-12 74.2 15.5 148 8-162 54-247 (652)
171 COG4785 NlpI Lipoprotein NlpI, 98.9 1E-08 2.2E-13 72.1 7.6 104 34-140 65-168 (297)
172 PF06552 TOM20_plant: Plant sp 98.9 4.2E-08 9E-13 67.1 10.3 99 50-148 7-123 (186)
173 KOG3081|consensus 98.9 5E-07 1.1E-11 65.5 15.6 142 7-158 115-260 (299)
174 KOG2796|consensus 98.8 2.8E-07 6E-12 66.8 13.8 141 6-149 183-333 (366)
175 PF06552 TOM20_plant: Plant sp 98.8 7E-08 1.5E-12 66.0 10.3 97 15-111 6-123 (186)
176 KOG4555|consensus 98.8 2.9E-07 6.3E-12 59.7 12.5 109 39-150 48-172 (175)
177 PLN03077 Protein ECB2; Provisi 98.8 1E-06 2.2E-11 76.1 19.8 173 6-189 530-709 (857)
178 COG0457 NrfG FOG: TPR repeat [ 98.8 5.8E-06 1.3E-10 58.9 21.0 158 6-166 65-229 (291)
179 PF13424 TPR_12: Tetratricopep 98.8 1.4E-08 2.9E-13 61.2 5.9 64 33-96 4-74 (78)
180 KOG1915|consensus 98.8 2E-06 4.4E-11 67.2 18.6 158 2-163 324-495 (677)
181 KOG4555|consensus 98.8 3.7E-07 8.1E-12 59.2 12.1 103 72-177 47-153 (175)
182 COG4700 Uncharacterized protei 98.8 5.9E-07 1.3E-11 61.9 13.7 122 6-131 95-219 (251)
183 COG4785 NlpI Lipoprotein NlpI, 98.8 7.6E-07 1.6E-11 62.9 13.9 94 10-103 75-168 (297)
184 COG0457 NrfG FOG: TPR repeat [ 98.8 4.6E-06 1E-10 59.4 18.6 153 6-161 101-258 (291)
185 PF13424 TPR_12: Tetratricopep 98.8 1.1E-08 2.3E-13 61.7 4.0 68 65-135 2-76 (78)
186 KOG2053|consensus 98.8 6.9E-07 1.5E-11 74.1 15.2 138 7-148 16-153 (932)
187 PF14938 SNAP: Soluble NSF att 98.7 4.8E-07 1E-11 68.1 13.0 140 8-150 82-246 (282)
188 KOG1915|consensus 98.7 1.6E-05 3.6E-10 62.3 20.7 153 6-163 79-231 (677)
189 COG4105 ComL DNA uptake lipopr 98.7 9.6E-06 2.1E-10 58.8 18.2 106 33-138 33-149 (254)
190 PF13428 TPR_14: Tetratricopep 98.7 6.8E-08 1.5E-12 51.3 5.0 40 70-109 3-42 (44)
191 KOG1130|consensus 98.7 1.1E-07 2.5E-12 72.8 7.9 143 15-160 170-336 (639)
192 KOG4340|consensus 98.6 8.3E-07 1.8E-11 65.6 11.3 127 5-134 49-207 (459)
193 KOG1070|consensus 98.6 5.1E-06 1.1E-10 72.2 17.2 156 2-160 1460-1655(1710)
194 PF13428 TPR_14: Tetratricopep 98.6 1.4E-07 3.1E-12 50.1 5.3 42 35-76 2-43 (44)
195 KOG0376|consensus 98.6 1.1E-07 2.5E-12 73.9 6.7 102 10-111 14-115 (476)
196 KOG0376|consensus 98.6 1.2E-07 2.5E-12 73.9 6.6 113 39-154 9-121 (476)
197 PF05843 Suf: Suppressor of fo 98.6 2.5E-06 5.4E-11 64.1 13.2 125 35-162 2-130 (280)
198 KOG4642|consensus 98.6 3E-07 6.6E-12 65.5 7.4 89 9-97 19-107 (284)
199 KOG2796|consensus 98.6 7.9E-06 1.7E-10 59.5 14.6 159 5-166 127-313 (366)
200 KOG4642|consensus 98.6 2.1E-07 4.6E-12 66.3 6.3 92 40-134 16-107 (284)
201 KOG1070|consensus 98.5 1.6E-05 3.4E-10 69.3 17.3 151 10-163 1540-1694(1710)
202 KOG1130|consensus 98.5 7.1E-07 1.5E-11 68.6 8.0 151 10-163 105-299 (639)
203 KOG2053|consensus 98.5 4.2E-06 9.1E-11 69.6 12.5 112 44-159 19-130 (932)
204 PRK04841 transcriptional regul 98.4 4E-05 8.8E-10 66.7 18.7 152 8-162 460-635 (903)
205 PF13431 TPR_17: Tetratricopep 98.4 3.4E-07 7.3E-12 45.6 3.3 32 57-88 2-33 (34)
206 KOG0545|consensus 98.4 6.4E-06 1.4E-10 59.3 10.5 103 35-140 179-299 (329)
207 PF07719 TPR_2: Tetratricopept 98.4 9.9E-07 2.1E-11 43.9 4.8 33 69-101 2-34 (34)
208 KOG2610|consensus 98.4 2.4E-05 5.1E-10 59.0 13.8 150 10-162 113-270 (491)
209 KOG2471|consensus 98.4 2.4E-06 5.2E-11 67.0 8.8 141 10-153 216-383 (696)
210 KOG0551|consensus 98.4 6.6E-05 1.4E-09 56.4 15.6 104 35-141 82-189 (390)
211 PF00515 TPR_1: Tetratricopept 98.4 8.1E-07 1.8E-11 44.3 4.1 32 69-100 2-33 (34)
212 PF10300 DUF3808: Protein of u 98.4 0.00025 5.4E-09 57.2 20.0 143 13-158 201-359 (468)
213 PRK04841 transcriptional regul 98.3 0.00042 9.2E-09 60.5 22.3 155 5-162 414-596 (903)
214 PF10300 DUF3808: Protein of u 98.3 1.7E-05 3.6E-10 63.9 12.6 119 13-134 246-376 (468)
215 COG3118 Thioredoxin domain-con 98.3 9.5E-05 2.1E-09 54.8 15.0 142 9-155 143-288 (304)
216 KOG1941|consensus 98.3 2.8E-05 6E-10 59.1 11.8 152 8-162 91-269 (518)
217 KOG3081|consensus 98.3 0.00011 2.3E-09 53.7 14.3 127 10-140 147-277 (299)
218 PF13431 TPR_17: Tetratricopep 98.3 9.8E-07 2.1E-11 43.9 2.9 31 91-124 2-32 (34)
219 KOG1586|consensus 98.2 0.00069 1.5E-08 48.7 18.0 130 6-138 79-228 (288)
220 KOG0545|consensus 98.2 2.8E-05 6E-10 56.1 9.4 96 8-103 186-299 (329)
221 PF00515 TPR_1: Tetratricopept 98.2 4.3E-06 9.3E-11 41.6 3.9 34 102-138 1-34 (34)
222 KOG1941|consensus 98.1 0.00033 7.2E-09 53.5 15.1 150 5-157 127-304 (518)
223 PF07719 TPR_2: Tetratricopept 98.1 1.2E-05 2.6E-10 39.8 5.2 34 34-67 1-34 (34)
224 COG3118 Thioredoxin domain-con 98.1 0.00056 1.2E-08 50.8 15.4 170 19-196 122-297 (304)
225 KOG0551|consensus 98.1 0.00031 6.8E-09 52.9 13.9 94 7-100 88-185 (390)
226 PF03704 BTAD: Bacterial trans 98.1 0.00026 5.6E-09 47.8 12.8 60 70-132 64-123 (146)
227 PF03704 BTAD: Bacterial trans 98.1 0.00018 3.8E-09 48.6 11.9 87 10-96 16-124 (146)
228 KOG1308|consensus 98.1 4.4E-06 9.6E-11 62.7 4.1 109 43-155 123-231 (377)
229 COG2976 Uncharacterized protei 98.1 0.00047 1E-08 48.1 13.4 98 37-138 92-192 (207)
230 KOG2610|consensus 98.0 0.00048 1E-08 52.2 14.1 118 40-160 109-230 (491)
231 PF13281 DUF4071: Domain of un 98.0 0.0027 5.8E-08 49.4 17.8 125 34-159 141-279 (374)
232 KOG2396|consensus 98.0 0.00088 1.9E-08 53.1 15.2 92 51-144 88-179 (568)
233 PF04184 ST7: ST7 protein; In 98.0 0.0011 2.5E-08 52.6 15.9 132 12-148 180-339 (539)
234 PF13181 TPR_8: Tetratricopept 98.0 1.7E-05 3.7E-10 39.3 3.9 30 70-99 3-32 (34)
235 KOG1585|consensus 98.0 0.0031 6.7E-08 45.8 16.4 181 6-189 37-246 (308)
236 PF04184 ST7: ST7 protein; In 97.9 0.00057 1.2E-08 54.2 13.1 124 37-165 171-321 (539)
237 PF13281 DUF4071: Domain of un 97.9 0.002 4.3E-08 50.1 15.9 158 6-164 147-330 (374)
238 KOG1308|consensus 97.9 1.3E-05 2.9E-10 60.2 3.9 94 7-100 121-214 (377)
239 KOG1586|consensus 97.9 0.0038 8.3E-08 45.0 15.7 90 47-139 86-188 (288)
240 COG2976 Uncharacterized protei 97.8 0.00041 8.9E-09 48.4 9.5 97 5-102 94-193 (207)
241 PF04781 DUF627: Protein of un 97.8 0.00076 1.6E-08 42.8 9.5 47 86-135 62-108 (111)
242 PRK10941 hypothetical protein; 97.8 0.00076 1.6E-08 50.3 11.1 63 42-104 189-251 (269)
243 PF08424 NRDE-2: NRDE-2, neces 97.7 0.0043 9.3E-08 47.7 14.8 140 21-160 6-175 (321)
244 PF02259 FAT: FAT domain; Int 97.7 0.0043 9.2E-08 48.1 15.0 120 32-154 144-307 (352)
245 PF13174 TPR_6: Tetratricopept 97.7 9.4E-05 2E-09 36.2 3.8 30 71-100 3-32 (33)
246 PF13181 TPR_8: Tetratricopept 97.7 0.00017 3.6E-09 35.6 4.7 32 35-66 2-33 (34)
247 PF02259 FAT: FAT domain; Int 97.7 0.016 3.5E-07 44.9 18.3 63 68-133 146-212 (352)
248 KOG4507|consensus 97.7 0.00021 4.6E-09 57.7 7.2 104 44-150 617-721 (886)
249 PF04781 DUF627: Protein of un 97.6 0.00093 2E-08 42.4 8.5 92 7-98 3-108 (111)
250 PF09613 HrpB1_HrpK: Bacterial 97.6 0.0083 1.8E-07 40.9 14.5 102 35-141 11-112 (160)
251 PF14853 Fis1_TPR_C: Fis1 C-te 97.6 0.00046 1E-08 37.9 6.2 39 70-108 3-41 (53)
252 PF13176 TPR_7: Tetratricopept 97.6 0.00013 2.9E-09 36.6 3.8 25 71-95 2-26 (36)
253 PF13174 TPR_6: Tetratricopept 97.6 0.00018 3.8E-09 35.1 4.1 32 36-67 2-33 (33)
254 KOG0530|consensus 97.6 0.0033 7.2E-08 46.1 12.0 141 11-151 54-233 (318)
255 KOG2396|consensus 97.6 0.0021 4.7E-08 51.0 11.7 92 17-108 88-180 (568)
256 KOG2047|consensus 97.6 0.025 5.5E-07 46.6 17.9 129 4-136 391-542 (835)
257 PRK10941 hypothetical protein; 97.6 0.0017 3.6E-08 48.4 10.7 74 70-146 183-256 (269)
258 COG0790 FOG: TPR repeat, SEL1 97.6 0.019 4.2E-07 43.4 16.9 137 10-153 87-236 (292)
259 KOG3824|consensus 97.5 0.00054 1.2E-08 51.3 7.6 70 76-148 124-193 (472)
260 KOG1550|consensus 97.5 0.0082 1.8E-07 49.7 14.9 143 10-158 259-416 (552)
261 KOG2047|consensus 97.5 0.039 8.5E-07 45.6 18.2 135 3-137 428-582 (835)
262 PF14561 TPR_20: Tetratricopep 97.5 0.0034 7.5E-08 38.7 9.4 44 56-99 10-53 (90)
263 KOG3824|consensus 97.4 0.00091 2E-08 50.1 7.7 72 40-111 122-193 (472)
264 PF04910 Tcf25: Transcriptiona 97.4 0.036 7.8E-07 43.4 19.0 128 25-155 31-194 (360)
265 PF14561 TPR_20: Tetratricopep 97.4 0.0047 1E-07 38.0 9.6 67 87-156 7-75 (90)
266 COG3898 Uncharacterized membra 97.4 0.039 8.5E-07 43.0 17.7 147 11-160 131-284 (531)
267 KOG2471|consensus 97.4 0.00067 1.4E-08 53.8 6.5 106 10-115 250-382 (696)
268 COG3898 Uncharacterized membra 97.4 0.045 9.7E-07 42.7 18.9 124 11-137 165-295 (531)
269 KOG3364|consensus 97.4 0.0086 1.9E-07 39.4 10.5 73 35-107 33-110 (149)
270 KOG1585|consensus 97.3 0.019 4.1E-07 41.9 13.0 145 10-158 81-246 (308)
271 PF14853 Fis1_TPR_C: Fis1 C-te 97.3 0.002 4.2E-08 35.4 6.4 46 103-151 2-47 (53)
272 smart00028 TPR Tetratricopepti 97.3 0.00045 9.8E-09 32.9 3.7 31 70-100 3-33 (34)
273 KOG4507|consensus 97.3 0.013 2.7E-07 47.9 13.3 121 21-144 200-322 (886)
274 COG5191 Uncharacterized conser 97.3 0.00046 9.9E-09 51.7 4.7 84 58-144 97-181 (435)
275 TIGR02561 HrpB1_HrpK type III 97.3 0.011 2.4E-07 39.6 10.5 81 36-116 12-92 (153)
276 PRK15180 Vi polysaccharide bio 97.2 0.0031 6.7E-08 50.2 8.9 132 8-142 297-428 (831)
277 PF08424 NRDE-2: NRDE-2, neces 97.2 0.026 5.7E-07 43.4 13.9 117 16-135 47-184 (321)
278 PF13176 TPR_7: Tetratricopept 97.2 0.0012 2.7E-08 33.0 4.4 27 36-62 1-27 (36)
279 PF09613 HrpB1_HrpK: Bacterial 97.2 0.017 3.6E-07 39.4 10.9 83 70-155 12-94 (160)
280 COG4649 Uncharacterized protei 97.1 0.044 9.5E-07 38.0 16.2 143 4-151 62-212 (221)
281 KOG0530|consensus 97.1 0.011 2.3E-07 43.5 9.7 140 14-153 92-273 (318)
282 COG4976 Predicted methyltransf 97.1 0.0013 2.9E-08 47.2 4.8 57 11-67 6-62 (287)
283 PF07079 DUF1347: Protein of u 97.0 0.12 2.5E-06 41.2 16.4 48 109-160 469-516 (549)
284 KOG4814|consensus 97.0 0.015 3.3E-07 47.8 10.8 96 36-134 356-457 (872)
285 COG4976 Predicted methyltransf 96.9 0.002 4.3E-08 46.3 4.8 61 43-103 4-64 (287)
286 smart00028 TPR Tetratricopepti 96.9 0.0021 4.6E-08 30.3 3.6 32 103-137 2-33 (34)
287 PF09986 DUF2225: Uncharacteri 96.9 0.028 6.1E-07 40.6 10.5 85 13-97 90-194 (214)
288 COG3914 Spy Predicted O-linked 96.9 0.069 1.5E-06 43.6 13.4 132 19-153 50-190 (620)
289 KOG1550|consensus 96.9 0.21 4.6E-06 41.5 17.2 131 16-152 228-373 (552)
290 COG0790 FOG: TPR repeat, SEL1 96.9 0.13 2.8E-06 38.9 15.3 136 10-151 51-199 (292)
291 PF08631 SPO22: Meiosis protei 96.8 0.14 2.9E-06 38.7 16.6 122 12-136 5-152 (278)
292 KOG3617|consensus 96.8 0.034 7.4E-07 47.4 11.3 61 35-95 859-939 (1416)
293 PF09986 DUF2225: Uncharacteri 96.7 0.074 1.6E-06 38.4 11.8 89 46-137 89-197 (214)
294 KOG2300|consensus 96.7 0.18 3.8E-06 40.6 14.2 124 6-132 13-154 (629)
295 COG5191 Uncharacterized conser 96.7 0.0041 8.8E-08 46.8 5.0 82 27-108 100-182 (435)
296 PF07079 DUF1347: Protein of u 96.7 0.19 4.1E-06 40.1 14.1 122 9-133 15-156 (549)
297 PF08631 SPO22: Meiosis protei 96.7 0.18 4E-06 38.0 15.2 122 44-165 3-147 (278)
298 PF10602 RPN7: 26S proteasome 96.6 0.084 1.8E-06 37.0 11.3 99 34-135 36-143 (177)
299 COG2912 Uncharacterized conser 96.6 0.028 6.1E-07 41.6 9.0 61 77-140 190-250 (269)
300 KOG1258|consensus 96.6 0.34 7.3E-06 39.8 15.7 117 6-125 303-420 (577)
301 KOG3364|consensus 96.4 0.14 3E-06 34.0 11.7 82 68-152 32-118 (149)
302 KOG4814|consensus 96.4 0.095 2.1E-06 43.4 11.4 87 74-163 360-452 (872)
303 KOG1310|consensus 96.4 0.019 4.2E-07 46.3 7.3 88 14-101 388-478 (758)
304 KOG2300|consensus 96.3 0.44 9.5E-06 38.5 18.8 171 10-186 333-540 (629)
305 KOG3617|consensus 96.2 0.04 8.6E-07 47.0 8.6 112 4-131 862-993 (1416)
306 KOG1914|consensus 96.2 0.14 3E-06 41.7 11.2 82 24-107 10-91 (656)
307 KOG0529|consensus 96.2 0.45 9.7E-06 37.4 14.1 138 16-153 45-197 (421)
308 PF12968 DUF3856: Domain of Un 96.2 0.18 3.8E-06 32.7 10.7 86 10-95 19-127 (144)
309 PF10602 RPN7: 26S proteasome 96.2 0.16 3.4E-06 35.6 10.4 95 5-99 41-144 (177)
310 PRK13184 pknD serine/threonine 96.1 0.16 3.5E-06 44.5 12.1 95 9-104 484-588 (932)
311 TIGR02561 HrpB1_HrpK type III 96.1 0.23 5.1E-06 33.5 11.7 74 12-85 22-95 (153)
312 PF04910 Tcf25: Transcriptiona 96.1 0.5 1.1E-05 37.1 14.7 133 6-141 46-229 (360)
313 PF11207 DUF2989: Protein of u 96.1 0.28 6.1E-06 34.8 11.1 75 80-158 118-197 (203)
314 PF13374 TPR_10: Tetratricopep 96.1 0.02 4.3E-07 29.2 4.3 29 69-97 3-31 (42)
315 PF15015 NYD-SP12_N: Spermatog 96.1 0.15 3.3E-06 40.2 10.6 86 9-94 185-288 (569)
316 KOG0529|consensus 96.0 0.18 4E-06 39.5 10.7 140 12-151 87-241 (421)
317 KOG1310|consensus 96.0 0.061 1.3E-06 43.6 8.3 91 46-139 386-479 (758)
318 PF10579 Rapsyn_N: Rapsyn N-te 95.8 0.12 2.7E-06 30.7 7.2 54 40-93 12-68 (80)
319 COG3629 DnrI DNA-binding trans 95.8 0.079 1.7E-06 39.7 8.0 64 67-133 152-215 (280)
320 KOG1914|consensus 95.8 0.86 1.9E-05 37.4 14.8 143 15-160 346-493 (656)
321 PF12862 Apc5: Anaphase-promot 95.8 0.092 2E-06 32.6 7.1 53 45-97 9-70 (94)
322 COG2912 Uncharacterized conser 95.8 0.11 2.3E-06 38.7 8.4 68 42-109 189-256 (269)
323 PF07720 TPR_3: Tetratricopept 95.7 0.055 1.2E-06 27.0 4.7 30 70-99 3-34 (36)
324 KOG1258|consensus 95.7 0.8 1.7E-05 37.8 13.5 123 34-159 297-420 (577)
325 COG3629 DnrI DNA-binding trans 95.7 0.12 2.5E-06 38.9 8.3 75 84-163 137-211 (280)
326 PF15015 NYD-SP12_N: Spermatog 95.6 0.075 1.6E-06 41.9 7.3 83 75-160 183-283 (569)
327 KOG2581|consensus 95.6 0.4 8.6E-06 37.8 11.1 129 7-138 133-280 (493)
328 COG3914 Spy Predicted O-linked 95.6 0.97 2.1E-05 37.3 13.6 108 48-159 45-155 (620)
329 PF12968 DUF3856: Domain of Un 95.5 0.37 8E-06 31.3 11.1 88 43-133 18-128 (144)
330 COG5107 RNA14 Pre-mRNA 3'-end 95.4 1.1 2.4E-05 36.1 14.2 159 5-169 307-496 (660)
331 PF12862 Apc5: Anaphase-promot 95.3 0.17 3.7E-06 31.3 7.2 57 9-65 7-72 (94)
332 PF10373 EST1_DNA_bind: Est1 D 95.3 0.13 2.8E-06 38.5 7.8 62 19-80 1-62 (278)
333 PF13374 TPR_10: Tetratricopep 95.3 0.08 1.7E-06 26.8 4.7 29 35-63 3-31 (42)
334 PF10373 EST1_DNA_bind: Est1 D 95.1 0.16 3.4E-06 38.0 7.8 62 53-114 1-62 (278)
335 PF11207 DUF2989: Protein of u 95.1 0.59 1.3E-05 33.3 9.8 79 44-126 116-199 (203)
336 PF10579 Rapsyn_N: Rapsyn N-te 95.0 0.29 6.3E-06 29.1 7.0 56 6-61 12-70 (80)
337 PRK13184 pknD serine/threonine 94.9 0.27 5.8E-06 43.2 9.4 99 41-143 482-590 (932)
338 PF07721 TPR_4: Tetratricopept 94.5 0.064 1.4E-06 24.5 2.8 20 72-91 5-24 (26)
339 KOG1839|consensus 94.4 0.77 1.7E-05 41.3 10.9 145 11-158 943-1118(1236)
340 PF10516 SHNi-TPR: SHNi-TPR; 94.4 0.086 1.9E-06 26.7 3.2 27 70-96 3-29 (38)
341 PF07721 TPR_4: Tetratricopept 94.2 0.083 1.8E-06 24.1 2.8 24 35-58 2-25 (26)
342 KOG2041|consensus 94.1 3 6.6E-05 35.6 13.0 60 68-130 796-877 (1189)
343 KOG0890|consensus 94.0 1.2 2.7E-05 42.5 11.6 124 32-158 1668-1808(2382)
344 KOG0985|consensus 93.9 4.5 9.8E-05 36.2 14.8 61 32-97 1102-1162(1666)
345 smart00386 HAT HAT (Half-A-TPR 93.8 0.27 5.9E-06 23.1 4.5 24 50-73 3-26 (33)
346 PF10345 Cohesin_load: Cohesin 93.8 3.7 8E-05 34.8 19.0 116 16-135 37-169 (608)
347 COG3947 Response regulator con 93.8 1.8 4E-05 32.8 10.3 66 104-172 281-346 (361)
348 PF10516 SHNi-TPR: SHNi-TPR; 93.7 0.23 4.9E-06 25.1 4.0 29 35-63 2-30 (38)
349 PRK15180 Vi polysaccharide bio 93.7 1 2.2E-05 36.5 9.5 113 43-158 298-410 (831)
350 COG4455 ImpE Protein of avirul 93.7 0.92 2E-05 32.9 8.3 62 7-68 8-69 (273)
351 PF07720 TPR_3: Tetratricopept 93.6 0.26 5.7E-06 24.5 4.1 33 103-138 2-36 (36)
352 COG4649 Uncharacterized protei 93.5 1.8 3.8E-05 30.3 10.5 103 10-113 104-211 (221)
353 PF13226 DUF4034: Domain of un 93.5 2.5 5.4E-05 31.9 11.0 133 6-154 6-148 (277)
354 COG3947 Response regulator con 93.5 0.54 1.2E-05 35.5 7.2 57 72-131 283-339 (361)
355 COG5107 RNA14 Pre-mRNA 3'-end 93.4 2.8 6E-05 33.9 11.3 49 47-95 445-493 (660)
356 smart00386 HAT HAT (Half-A-TPR 93.4 0.29 6.4E-06 23.0 4.2 29 82-110 1-29 (33)
357 PF09670 Cas_Cas02710: CRISPR- 93.4 2.1 4.6E-05 33.9 10.9 57 7-63 138-198 (379)
358 KOG0985|consensus 92.9 6.7 0.00014 35.2 13.8 129 8-158 1112-1268(1666)
359 PF11817 Foie-gras_1: Foie gra 92.8 2.6 5.6E-05 31.2 10.2 23 73-95 183-205 (247)
360 PF12854 PPR_1: PPR repeat 92.7 0.47 1E-05 23.1 4.2 27 67-93 6-32 (34)
361 KOG0546|consensus 92.6 0.17 3.7E-06 38.9 3.7 78 70-150 277-354 (372)
362 COG2909 MalT ATP-dependent tra 92.5 6.8 0.00015 34.3 19.1 94 4-97 419-526 (894)
363 PF10255 Paf67: RNA polymerase 92.5 1.2 2.5E-05 35.5 8.2 62 35-96 123-192 (404)
364 PF04053 Coatomer_WDAD: Coatom 92.2 2.5 5.4E-05 34.3 9.9 102 10-138 305-406 (443)
365 KOG2422|consensus 91.7 7 0.00015 32.6 14.0 130 7-137 291-451 (665)
366 COG4455 ImpE Protein of avirul 91.7 2.3 5E-05 30.9 8.1 62 42-103 9-70 (273)
367 KOG0890|consensus 91.6 11 0.00024 36.7 14.2 146 6-159 1389-1538(2382)
368 PF08311 Mad3_BUB1_I: Mad3/BUB 91.5 2.8 6E-05 27.6 8.2 44 52-95 81-126 (126)
369 COG5536 BET4 Protein prenyltra 91.3 2.5 5.5E-05 31.8 8.3 136 16-151 90-239 (328)
370 PF11817 Foie-gras_1: Foie gra 91.1 4.7 0.0001 29.9 9.8 80 16-95 154-245 (247)
371 KOG0276|consensus 90.7 4.9 0.00011 33.7 10.0 66 22-96 629-694 (794)
372 TIGR03504 FimV_Cterm FimV C-te 90.6 0.8 1.7E-05 24.0 3.9 25 38-62 3-27 (44)
373 PF12854 PPR_1: PPR repeat 90.5 0.96 2.1E-05 22.0 4.0 27 33-59 6-32 (34)
374 PF10255 Paf67: RNA polymerase 90.4 0.85 1.8E-05 36.3 5.6 56 74-132 128-191 (404)
375 PF09797 NatB_MDM20: N-acetylt 89.9 5.6 0.00012 31.3 9.9 44 50-93 199-242 (365)
376 PF14863 Alkyl_sulf_dimr: Alky 89.8 2.3 5.1E-05 28.6 6.6 54 102-158 70-123 (141)
377 smart00299 CLH Clathrin heavy 89.8 4.2 9.2E-05 26.9 13.9 120 9-150 16-136 (140)
378 PF04053 Coatomer_WDAD: Coatom 89.5 10 0.00022 30.9 14.2 101 11-131 272-373 (443)
379 TIGR03504 FimV_Cterm FimV C-te 88.9 1.4 2.9E-05 23.1 3.9 23 107-132 4-26 (44)
380 PF04190 DUF410: Protein of un 88.5 8.7 0.00019 28.8 12.6 25 33-57 89-113 (260)
381 KOG0128|consensus 88.5 16 0.00035 31.9 13.6 118 17-135 96-220 (881)
382 COG5536 BET4 Protein prenyltra 88.3 6.8 0.00015 29.6 8.5 131 17-150 49-195 (328)
383 COG2909 MalT ATP-dependent tra 88.3 17 0.00037 32.0 16.6 149 7-158 367-556 (894)
384 KOG3807|consensus 88.2 11 0.00023 29.5 12.0 29 105-136 278-306 (556)
385 KOG1538|consensus 88.1 3.8 8.2E-05 34.7 7.8 113 5-131 708-830 (1081)
386 KOG2581|consensus 88.1 12 0.00026 29.9 13.9 95 8-102 177-281 (493)
387 PF09205 DUF1955: Domain of un 88.0 6 0.00013 26.4 7.3 119 9-135 11-150 (161)
388 PF04090 RNA_pol_I_TF: RNA pol 87.8 8.2 0.00018 27.6 9.9 55 9-63 50-105 (199)
389 PF14863 Alkyl_sulf_dimr: Alky 87.6 3.6 7.9E-05 27.6 6.3 51 66-116 68-118 (141)
390 cd02682 MIT_AAA_Arch MIT: doma 87.5 3 6.5E-05 24.7 5.2 17 78-94 16-32 (75)
391 PF13041 PPR_2: PPR repeat fam 87.2 3 6.6E-05 22.0 6.3 25 71-95 6-30 (50)
392 PF01535 PPR: PPR repeat; Int 86.5 1.7 3.6E-05 20.0 3.3 24 72-95 4-27 (31)
393 KOG1463|consensus 86.0 15 0.00032 28.8 12.8 158 6-166 134-314 (411)
394 PF09797 NatB_MDM20: N-acetylt 85.6 16 0.00034 28.8 10.0 44 84-130 199-242 (365)
395 PHA02537 M terminase endonucle 85.2 1.2 2.7E-05 32.5 3.4 19 120-138 193-211 (230)
396 PF13041 PPR_2: PPR repeat fam 85.1 4 8.7E-05 21.5 6.3 30 34-63 3-32 (50)
397 KOG1839|consensus 84.8 11 0.00023 34.5 9.3 125 7-134 980-1128(1236)
398 PF11846 DUF3366: Domain of un 84.7 5.6 0.00012 28.1 6.6 47 87-137 130-176 (193)
399 KOG2041|consensus 84.6 26 0.00056 30.4 11.0 59 35-93 797-877 (1189)
400 KOG3783|consensus 84.6 14 0.00031 30.5 9.3 91 17-109 250-344 (546)
401 PRK15490 Vi polysaccharide bio 84.5 11 0.00025 31.6 8.9 81 10-92 18-98 (578)
402 KOG3783|consensus 84.4 22 0.00048 29.5 11.3 91 51-146 250-344 (546)
403 PF11846 DUF3366: Domain of un 84.3 5.6 0.00012 28.1 6.5 38 121-159 127-164 (193)
404 PF04190 DUF410: Protein of un 83.8 16 0.00035 27.3 13.2 25 67-91 89-113 (260)
405 KOG3616|consensus 83.7 30 0.00064 30.3 11.6 47 46-93 744-790 (1636)
406 COG4259 Uncharacterized protei 83.6 8.7 0.00019 24.2 6.4 33 35-67 73-105 (121)
407 PF10345 Cohesin_load: Cohesin 83.4 27 0.00059 29.7 17.2 118 10-131 70-205 (608)
408 KOG0686|consensus 83.3 19 0.00042 28.8 9.2 95 35-132 151-256 (466)
409 COG4941 Predicted RNA polymera 83.2 14 0.00031 28.8 8.2 131 12-146 268-406 (415)
410 cd02682 MIT_AAA_Arch MIT: doma 83.1 7.4 0.00016 23.0 5.8 19 85-103 30-48 (75)
411 PF14852 Fis1_TPR_N: Fis1 N-te 83.0 3.8 8.2E-05 20.2 3.6 34 103-136 2-35 (35)
412 PF10037 MRP-S27: Mitochondria 83.0 19 0.00042 29.1 9.4 89 9-98 75-168 (429)
413 KOG0686|consensus 83.0 9.1 0.0002 30.5 7.3 91 6-96 156-257 (466)
414 TIGR02710 CRISPR-associated pr 82.8 22 0.00048 28.3 12.0 54 6-59 136-196 (380)
415 TIGR00756 PPR pentatricopeptid 82.4 3.8 8.2E-05 19.1 3.9 26 71-96 3-28 (35)
416 KOG0546|consensus 82.4 1.5 3.2E-05 34.0 2.9 106 9-114 231-355 (372)
417 KOG4151|consensus 81.7 10 0.00022 32.7 7.6 115 41-158 60-180 (748)
418 KOG2422|consensus 81.7 31 0.00066 29.1 17.6 117 12-131 250-404 (665)
419 KOG4014|consensus 80.1 19 0.00041 25.7 14.8 132 13-151 48-212 (248)
420 smart00777 Mad3_BUB1_I Mad3/BU 79.4 15 0.00033 24.1 6.7 23 104-129 101-123 (125)
421 PHA02537 M terminase endonucle 78.8 8.1 0.00018 28.3 5.6 22 77-98 92-113 (230)
422 KOG0128|consensus 77.0 52 0.0011 29.0 12.4 105 49-154 94-198 (881)
423 cd02680 MIT_calpain7_2 MIT: do 76.9 7.1 0.00015 23.1 4.0 17 46-62 18-34 (75)
424 KOG2114|consensus 76.9 53 0.0011 29.1 12.6 53 9-62 343-396 (933)
425 cd02679 MIT_spastin MIT: domai 76.6 8.2 0.00018 23.1 4.3 16 15-30 4-19 (79)
426 PF02064 MAS20: MAS20 protein 76.2 12 0.00025 24.5 5.2 31 73-103 68-98 (121)
427 KOG3677|consensus 75.4 10 0.00022 30.4 5.5 107 37-149 238-353 (525)
428 PF02184 HAT: HAT (Half-A-TPR) 75.0 8 0.00017 18.7 3.3 16 84-99 3-18 (32)
429 PF12753 Nro1: Nuclear pore co 75.0 16 0.00035 29.0 6.6 39 120-160 333-371 (404)
430 smart00299 CLH Clathrin heavy 74.8 21 0.00046 23.5 8.7 51 41-92 14-64 (140)
431 PF09205 DUF1955: Domain of un 74.5 23 0.0005 23.8 7.7 83 11-97 67-149 (161)
432 KOG1464|consensus 74.4 13 0.00028 28.2 5.7 50 47-96 40-93 (440)
433 KOG1811|consensus 73.7 57 0.0012 27.9 9.9 71 66-137 585-656 (1141)
434 PRK15490 Vi polysaccharide bio 73.0 57 0.0012 27.6 10.1 80 45-129 19-98 (578)
435 PF04840 Vps16_C: Vps16, C-ter 72.9 42 0.00091 26.0 11.1 99 43-161 186-284 (319)
436 PRK11619 lytic murein transgly 72.3 64 0.0014 27.9 14.3 122 7-132 248-373 (644)
437 KOG2114|consensus 72.0 29 0.00063 30.5 7.8 108 41-158 341-450 (933)
438 PF13812 PPR_3: Pentatricopept 71.3 9.2 0.0002 17.8 4.1 25 71-95 4-28 (34)
439 PF03745 DUF309: Domain of unk 71.1 16 0.00036 20.6 6.9 53 4-56 3-61 (62)
440 KOG3616|consensus 70.7 75 0.0016 28.0 16.2 47 11-58 455-501 (1636)
441 PF08238 Sel1: Sel1 repeat; I 69.9 11 0.00024 18.2 4.4 16 119-134 22-37 (39)
442 cd00280 TRFH Telomeric Repeat 69.7 37 0.00081 24.1 9.1 66 50-116 85-158 (200)
443 PF01239 PPTA: Protein prenylt 69.6 10 0.00022 17.7 3.7 27 125-151 3-29 (31)
444 PF15469 Sec5: Exocyst complex 68.4 38 0.00082 23.7 7.9 21 44-64 96-116 (182)
445 PF10952 DUF2753: Protein of u 67.5 33 0.00071 22.6 5.7 63 73-138 6-87 (140)
446 PF04090 RNA_pol_I_TF: RNA pol 67.4 44 0.00095 24.0 11.4 120 35-154 42-193 (199)
447 COG1747 Uncharacterized N-term 67.2 75 0.0016 26.7 18.3 64 31-96 96-159 (711)
448 PF12753 Nro1: Nuclear pore co 67.2 12 0.00026 29.7 4.4 48 84-133 334-390 (404)
449 KOG4151|consensus 66.6 31 0.00066 30.0 6.9 95 10-104 63-163 (748)
450 KOG1464|consensus 65.4 59 0.0013 24.8 8.6 95 39-136 150-262 (440)
451 COG5159 RPN6 26S proteasome re 65.3 61 0.0013 25.0 12.8 155 5-162 8-188 (421)
452 PF07219 HemY_N: HemY protein 65.0 33 0.00071 21.7 6.2 43 74-116 65-107 (108)
453 PF07219 HemY_N: HemY protein 64.5 34 0.00073 21.7 5.8 47 105-154 62-108 (108)
454 KOG3807|consensus 64.2 70 0.0015 25.2 13.4 112 13-129 197-335 (556)
455 PF12583 TPPII_N: Tripeptidyl 64.0 22 0.00047 23.6 4.4 35 44-78 86-120 (139)
456 PF02064 MAS20: MAS20 protein 63.6 38 0.00082 22.1 5.6 31 105-138 66-96 (121)
457 COG5187 RPN7 26S proteasome re 62.7 70 0.0015 24.7 11.5 99 34-135 115-222 (412)
458 cd02683 MIT_1 MIT: domain cont 62.3 30 0.00066 20.5 5.5 12 125-136 33-44 (77)
459 smart00671 SEL1 Sel1-like repe 62.2 16 0.00035 17.2 3.8 13 120-132 20-32 (36)
460 PF04212 MIT: MIT (microtubule 62.0 21 0.00046 20.4 3.9 15 81-95 18-32 (69)
461 KOG4056|consensus 61.8 27 0.00059 23.3 4.6 34 73-106 86-119 (143)
462 PRK11619 lytic murein transgly 61.0 1.1E+02 0.0024 26.5 14.4 128 7-146 40-170 (644)
463 cd02677 MIT_SNX15 MIT: domain 60.9 14 0.00031 21.7 3.0 13 120-132 21-33 (75)
464 cd02681 MIT_calpain7_1 MIT: do 60.2 22 0.00047 21.1 3.7 16 80-95 18-33 (76)
465 KOG1497|consensus 60.1 81 0.0018 24.7 10.3 94 35-131 104-210 (399)
466 COG1747 Uncharacterized N-term 60.0 1E+02 0.0023 25.9 15.6 138 5-150 104-250 (711)
467 COG5600 Transcription-associat 59.5 48 0.001 26.4 6.3 62 73-137 182-252 (413)
468 PF15297 CKAP2_C: Cytoskeleton 59.3 45 0.00099 26.2 6.1 46 53-98 122-170 (353)
469 PF04348 LppC: LppC putative l 57.5 3.4 7.4E-05 34.4 0.0 86 7-92 31-122 (536)
470 KOG0687|consensus 56.8 95 0.0021 24.4 12.2 99 34-136 104-212 (393)
471 PF04348 LppC: LppC putative l 56.6 3.6 7.9E-05 34.3 0.0 110 22-134 11-127 (536)
472 COG5600 Transcription-associat 56.4 49 0.0011 26.3 5.9 61 40-100 183-252 (413)
473 TIGR00985 3a0801s04tom mitocho 56.0 36 0.00079 23.1 4.6 33 73-105 95-128 (148)
474 KOG1497|consensus 55.9 98 0.0021 24.3 12.9 84 70-157 105-198 (399)
475 PF12921 ATP13: Mitochondrial 52.7 64 0.0014 21.2 7.6 25 6-30 8-32 (126)
476 KOG0276|consensus 52.4 1.3E+02 0.0029 25.8 8.0 99 12-131 649-747 (794)
477 PF09670 Cas_Cas02710: CRISPR- 52.3 1.2E+02 0.0026 24.2 13.9 61 37-97 134-198 (379)
478 KOG4279|consensus 52.3 58 0.0013 28.6 6.1 122 12-137 255-398 (1226)
479 PF12921 ATP13: Mitochondrial 51.9 66 0.0014 21.1 8.3 27 37-63 5-31 (126)
480 PF09477 Type_III_YscG: Bacter 51.6 63 0.0014 20.8 9.2 76 46-130 18-94 (116)
481 KOG4279|consensus 51.3 1.3E+02 0.0028 26.7 8.0 107 7-115 294-413 (1226)
482 PF10952 DUF2753: Protein of u 50.8 71 0.0015 21.1 7.1 58 38-95 5-77 (140)
483 PF12739 TRAPPC-Trs85: ER-Golg 49.5 1.4E+02 0.003 24.1 14.8 112 35-149 209-351 (414)
484 PF00637 Clathrin: Region in C 48.9 10 0.00022 25.1 1.2 49 10-58 17-66 (143)
485 KOG4014|consensus 48.6 99 0.0022 22.2 13.4 117 31-152 31-157 (248)
486 PF08771 Rapamycin_bind: Rapam 48.0 68 0.0015 20.1 5.8 76 75-153 21-98 (100)
487 PF09477 Type_III_YscG: Bacter 47.2 75 0.0016 20.4 10.8 75 15-94 21-95 (116)
488 PF15297 CKAP2_C: Cytoskeleton 46.9 1.4E+02 0.0031 23.5 8.0 55 80-137 114-172 (353)
489 PF06957 COPI_C: Coatomer (COP 46.7 59 0.0013 26.4 5.2 23 7-29 211-233 (422)
490 KOG4459|consensus 45.3 36 0.00079 27.6 3.8 82 8-95 141-222 (471)
491 PF10366 Vps39_1: Vacuolar sor 43.7 40 0.00087 21.4 3.3 27 70-96 41-67 (108)
492 COG4259 Uncharacterized protei 43.2 85 0.0019 19.9 6.3 38 68-105 72-109 (121)
493 KOG0292|consensus 42.6 98 0.0021 27.9 6.1 45 45-94 654-698 (1202)
494 cd00280 TRFH Telomeric Repeat 42.4 1.3E+02 0.0027 21.6 8.8 61 16-77 85-153 (200)
495 smart00745 MIT Microtubule Int 42.4 60 0.0013 18.9 3.8 8 82-89 22-29 (77)
496 PF04097 Nic96: Nup93/Nic96; 41.7 1.4E+02 0.003 25.7 7.0 23 3-25 261-283 (613)
497 KOG4563|consensus 41.3 71 0.0015 25.3 4.7 45 72-116 45-97 (400)
498 KOG1463|consensus 41.1 1.8E+02 0.0039 23.1 9.1 118 38-158 132-268 (411)
499 COG5091 SGT1 Suppressor of G2 39.3 1.7E+02 0.0038 22.3 6.6 91 9-99 4-110 (368)
500 PF05053 Menin: Menin; InterP 38.8 2.5E+02 0.0054 24.0 9.7 80 34-131 257-344 (618)
No 1
>KOG3060|consensus
Probab=99.94 E-value=1e-24 Score=153.89 Aligned_cols=198 Identities=42% Similarity=0.659 Sum_probs=184.4
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD 83 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 83 (201)
.+.++.+...|++++|+++|+..++.+|++..++.+...+...+|+..+|++.+...++.+|.|.++|..++.+|+..|+
T Consensus 90 ~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~ 169 (289)
T KOG3060|consen 90 KLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGD 169 (289)
T ss_pred HHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhH
Confidence 45778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhH
Q psy12642 84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKK 163 (201)
Q Consensus 84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 163 (201)
|++|.-|+++.+-+.|.++..+..+|.+++..|+.+++.-|.++|.++++++|.+.++++++..|.....+..++....+
T Consensus 170 f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~~sk~~~k~~ 249 (289)
T KOG3060|consen 170 FEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQISKAELKRK 249 (289)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHHHhHHHHhhh
Confidence 99999999999999999999999999999999998999999999999999999999999999999999999999988777
Q ss_pred HH--HHHHhHHHHHHHHHHHHhhhcchHHHHHHHhhccCC
Q psy12642 164 KE--ISKQMMWVSKHLARQYEEQQGNTETLTELMSALQVS 201 (201)
Q Consensus 164 ~~--~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~ 201 (201)
+. ..++..|+..++.++|....+....+...+-.++|.
T Consensus 250 K~~a~~~l~~~aas~l~r~~q~s~~~~d~i~~~l~~lKi~ 289 (289)
T KOG3060|consen 250 KDVAAPDLISLAASQLERISQKSKNKLDLITAALENLKIT 289 (289)
T ss_pred hhhhhhhHHHhHHHHHHHHHHhccchhhHHHHHHHHhccC
Confidence 77 678999999999999966666666888777777763
No 2
>KOG4626|consensus
Probab=99.91 E-value=1.1e-22 Score=159.30 Aligned_cols=189 Identities=17% Similarity=0.218 Sum_probs=158.1
Q ss_pred hhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHH
Q psy12642 10 CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVF 89 (201)
Q Consensus 10 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 89 (201)
|..+|..+-|+..|+++++.+|+.+.++..+|..+...|+..+|+.+|++++.+.|+.+++...+|.+|..+|.+++|..
T Consensus 296 YyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ 375 (966)
T KOG4626|consen 296 YYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATR 375 (966)
T ss_pred EeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHH
Confidence 56788888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Q psy12642 90 CMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQ 169 (201)
Q Consensus 90 ~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 169 (201)
.|.+++...|.-..++.++|.+|...| ++++|+.+|+.++++.|....++.++|..|..+|+.+.|.....+.++-.
T Consensus 376 ly~~al~v~p~~aaa~nNLa~i~kqqg---nl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n 452 (966)
T KOG4626|consen 376 LYLKALEVFPEFAAAHNNLASIYKQQG---NLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN 452 (966)
T ss_pred HHHHHHhhChhhhhhhhhHHHHHHhcc---cHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC
Confidence 888888888888888888888888888 88888888888888888888888888888888888888888777776543
Q ss_pred hHH--HHHHHHHHHHhhhcchHHHHHHHhhccCC
Q psy12642 170 MMW--VSKHLARQYEEQQGNTETLTELMSALQVS 201 (201)
Q Consensus 170 ~~~--~~~~l~~~y~~~~~~~~~~~~~~~~~~~~ 201 (201)
... +-..|.-+|+......++++.|-.+|+|+
T Consensus 453 Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 453 PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 333 33457788888887778888888888764
No 3
>KOG4626|consensus
Probab=99.91 E-value=5.2e-23 Score=161.08 Aligned_cols=188 Identities=16% Similarity=0.113 Sum_probs=118.6
Q ss_pred hhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHH
Q psy12642 10 CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVF 89 (201)
Q Consensus 10 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 89 (201)
+..+|+.-.|+..|++++..+|+.+.+++.+|.+|.+.+.++.|+..|.+++...|++..++-.+|.+|+.+|..+-|+.
T Consensus 228 f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~ 307 (966)
T KOG4626|consen 228 FNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAID 307 (966)
T ss_pred HhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHH
Confidence 44566777777777777777777777777777777777777777666666666666666666666666666666666666
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Q psy12642 90 CMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQ 169 (201)
Q Consensus 90 ~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 169 (201)
+|++++.+.|+.+.++.++|.++...| +..+|..+|.+++.+.|+++.+.++|+.+|..+|..+.|..-.++...-.
T Consensus 308 ~Ykral~~~P~F~~Ay~NlanALkd~G---~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~ 384 (966)
T KOG4626|consen 308 TYKRALELQPNFPDAYNNLANALKDKG---SVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVF 384 (966)
T ss_pred HHHHHHhcCCCchHHHhHHHHHHHhcc---chHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC
Confidence 666666666666666666666666666 66666666666666666666666666666666666666655444443333
Q ss_pred hHHHHH--HHHHHHHhhhcchHHHHHHHhhccC
Q psy12642 170 MMWVSK--HLARQYEEQQGNTETLTELMSALQV 200 (201)
Q Consensus 170 ~~~~~~--~l~~~y~~~~~~~~~~~~~~~~~~~ 200 (201)
...+.. .|.-+|+++.+-++++.+|-.++.|
T Consensus 385 p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI 417 (966)
T KOG4626|consen 385 PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI 417 (966)
T ss_pred hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc
Confidence 333222 3444455554444455554444443
No 4
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=2.2e-20 Score=153.94 Aligned_cols=157 Identities=13% Similarity=0.033 Sum_probs=148.1
Q ss_pred HHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Q psy12642 5 VYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDY 84 (201)
Q Consensus 5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 84 (201)
..+..++..|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|+++.++..+|.+++..|++
T Consensus 336 ~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 415 (615)
T TIGR00990 336 LRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEF 415 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 34556778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHH
Q psy12642 85 AKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKK 164 (201)
Q Consensus 85 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 164 (201)
++|+.+|++++.++|++...+..+|.++...| ++++|+..|++++...|+++.++..++.++...|++.+|.....+
T Consensus 416 ~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g---~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 492 (615)
T TIGR00990 416 AQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEG---SIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDT 492 (615)
T ss_pred HHHHHHHHHHHHcCccCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999999999999999999999999999 999999999999999999999999999999999999999765444
No 5
>KOG1126|consensus
Probab=99.88 E-value=1.2e-21 Score=154.13 Aligned_cols=192 Identities=16% Similarity=0.060 Sum_probs=172.2
Q ss_pred hHHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q psy12642 3 PIVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG 82 (201)
Q Consensus 3 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 82 (201)
|-+.+-+|.-+++++.|+.+|+++++.+|.+..++-.+|.=+.....++.|...|+.++..+|.+..+|+.+|.+|.+++
T Consensus 424 Wca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqe 503 (638)
T KOG1126|consen 424 WCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQE 503 (638)
T ss_pred HHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccc
Confidence 44566778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhh
Q psy12642 83 DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAK 162 (201)
Q Consensus 83 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 162 (201)
+++.|.-.|++|+.++|.+......+|.++...| +.++|+..|++|+.++|.++...+..+.++..++++.+|..+.
T Consensus 504 k~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k---~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~L 580 (638)
T KOG1126|consen 504 KLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLK---RKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQEL 580 (638)
T ss_pred hhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhh---hhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHH
Confidence 9999999999999999999999999999999999 9999999999999999999999999999999999999997766
Q ss_pred HHHHHHHhHHHHH--HHHHHHHhhhcchHHHHHHHhh
Q psy12642 163 KKEISKQMMWVSK--HLARQYEEQQGNTETLTELMSA 197 (201)
Q Consensus 163 ~~~~~~~~~~~~~--~l~~~y~~~~~~~~~~~~~~~~ 197 (201)
++-..-..+.+.. -+.++|+...+++.++....=+
T Consensus 581 EeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A 617 (638)
T KOG1126|consen 581 EELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWA 617 (638)
T ss_pred HHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHH
Confidence 5554434444433 4778899988888876655433
No 6
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.87 E-value=5.7e-20 Score=128.46 Aligned_cols=160 Identities=13% Similarity=0.048 Sum_probs=150.3
Q ss_pred hHHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q psy12642 3 PIVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG 82 (201)
Q Consensus 3 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 82 (201)
.|-.++.|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|+++++++|++.+++.+.|-.++.+|
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCC
Confidence 46678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642 83 DYAKAVFCMEELFLH--HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSA 160 (201)
Q Consensus 83 ~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 160 (201)
++++|...|++++.. .|..+..+.++|.|..+.| +.+.|..+|+++++.+|+.+.+...++......|++..|..
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~g---q~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAG---QFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcC---CchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 999999999999974 3566779999999999999 99999999999999999999999999999999999999977
Q ss_pred hhHHH
Q psy12642 161 AKKKE 165 (201)
Q Consensus 161 ~~~~~ 165 (201)
-.+..
T Consensus 195 ~~~~~ 199 (250)
T COG3063 195 YLERY 199 (250)
T ss_pred HHHHH
Confidence 55444
No 7
>KOG1155|consensus
Probab=99.86 E-value=1.3e-19 Score=137.77 Aligned_cols=156 Identities=16% Similarity=0.086 Sum_probs=149.3
Q ss_pred hhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHH
Q psy12642 9 GCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAV 88 (201)
Q Consensus 9 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~ 88 (201)
.|.-.+++++|+.+|+.+++.+|....+|..+|.-|.++++...|+..|+++++.+|.|..+|+.+|+.|.-++-+.=|+
T Consensus 339 YYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaL 418 (559)
T KOG1155|consen 339 YYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYAL 418 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHH
Confidence 35567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHH
Q psy12642 89 FCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEIS 167 (201)
Q Consensus 89 ~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 167 (201)
-+|++++...|+|+..|..+|.||.+.+ +.++|+++|.+++.....+..+++.||..|.++++..+|....++.+.
T Consensus 419 yYfqkA~~~kPnDsRlw~aLG~CY~kl~---~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 419 YYFQKALELKPNDSRLWVALGECYEKLN---RLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHhc---cHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 999999999999999999999999999999999999999887776654
No 8
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=2.3e-19 Score=148.02 Aligned_cols=185 Identities=17% Similarity=0.125 Sum_probs=159.4
Q ss_pred ccCHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHH
Q psy12642 13 FFRYEEALEHLETIIKI---DETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVF 89 (201)
Q Consensus 13 ~~~~~~A~~~~~~~l~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 89 (201)
.++|++|+..|++++.. .|....++..+|.++..+|++++|+..+++++..+|++...|..+|.++...|++++|+.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 46899999999999986 478888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Q psy12642 90 CMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQ 169 (201)
Q Consensus 90 ~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 169 (201)
.|++++..+|+++.+++.+|.+++..| ++++|+..|++++.++|++..++.+++.++..+|++++|...........
T Consensus 387 ~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 463 (615)
T TIGR00990 387 DFDKALKLNSEDPDIYYHRAQLHFIKG---EFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF 463 (615)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999 99999999999999999999999999999999999999977665544321
Q ss_pred h--HHHHHHHHHHHHhhhcchHHHHHHHhhccC
Q psy12642 170 M--MWVSKHLARQYEEQQGNTETLTELMSALQV 200 (201)
Q Consensus 170 ~--~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~ 200 (201)
. ..+...+...|......+.++..+.+++.+
T Consensus 464 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 1 233334555566555555566655555443
No 9
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.85 E-value=2.1e-19 Score=121.50 Aligned_cols=128 Identities=10% Similarity=-0.002 Sum_probs=120.3
Q ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q psy12642 20 LEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHP 99 (201)
Q Consensus 20 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 99 (201)
...++++++.+|++ +..+|.++...|++++|+..|.+++..+|.+..+|..+|.++...|++++|+..|++++..+|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 46889999999986 456899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhh
Q psy12642 100 HNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL 153 (201)
Q Consensus 100 ~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 153 (201)
+++..++.+|.++...| ++++|+..|.++++..|+++..+..++.+.....
T Consensus 90 ~~~~a~~~lg~~l~~~g---~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMG---EPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred CCcHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 99999999999999999 9999999999999999999999988888776544
No 10
>KOG1155|consensus
Probab=99.84 E-value=1.6e-19 Score=137.30 Aligned_cols=186 Identities=13% Similarity=0.067 Sum_probs=159.5
Q ss_pred HhhhhccCHHHHHHHHHHHHhcCcccHHHHH----------------------------------HHHHHHHHcCCHHHH
Q psy12642 8 IGCFHFFRYEEALEHLETIIKIDETNTAARK----------------------------------RKICILKAKNKIPEA 53 (201)
Q Consensus 8 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~----------------------------------~~a~~~~~~~~~~~A 53 (201)
.....+.+|++|+..|+.+.+.+|....-.- .+|..|...++.++|
T Consensus 270 ~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKA 349 (559)
T KOG1155|consen 270 AASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKA 349 (559)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHH
Confidence 4456789999999999999999986541111 124445556788999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHc
Q psy12642 54 IKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAIN 133 (201)
Q Consensus 54 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~ 133 (201)
+.+|+++++++|....+|..+|.=|..+++...|+..|++|+.++|.|..+|+.+|++|..++ -..=|+-+|+++++
T Consensus 350 v~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~---Mh~YaLyYfqkA~~ 426 (559)
T KOG1155|consen 350 VMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMK---MHFYALYYFQKALE 426 (559)
T ss_pred HHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhc---chHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred CCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHH--HHhHHHHHHHHHHHHhhhcchHHHHHHHh
Q psy12642 134 LNEKNIRALYGLALSCHQVLTSAKCSAAKKKEIS--KQMMWVSKHLARQYEEQQGNTETLTELMS 196 (201)
Q Consensus 134 ~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~y~~~~~~~~~~~~~~~ 196 (201)
..|++++.|..||.||.++++.++|+...+.... +...-+...|.+.|++.....++...+.+
T Consensus 427 ~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek 491 (559)
T KOG1155|consen 427 LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEK 491 (559)
T ss_pred cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999999999999999999998887753 44556666777788877766665554444
No 11
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.84 E-value=1.6e-18 Score=125.64 Aligned_cols=159 Identities=13% Similarity=0.092 Sum_probs=147.1
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD 83 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 83 (201)
+..+..++..|++++|+..++++++.+|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|+
T Consensus 35 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~ 114 (234)
T TIGR02521 35 VQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGK 114 (234)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhh
Q psy12642 84 YAKAVFCMEELFLHH--PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAA 161 (201)
Q Consensus 84 ~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 161 (201)
+++|+..+++++... +.....+..+|.++...| ++++|...+.+++..+|+++.++..++.++...|++++|...
T Consensus 115 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 191 (234)
T TIGR02521 115 YEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAG---DFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAY 191 (234)
T ss_pred HHHHHHHHHHHHhccccccchHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999754 456778899999999999 999999999999999999999999999999999999999765
Q ss_pred hHHH
Q psy12642 162 KKKE 165 (201)
Q Consensus 162 ~~~~ 165 (201)
..+.
T Consensus 192 ~~~~ 195 (234)
T TIGR02521 192 LERY 195 (234)
T ss_pred HHHH
Confidence 5443
No 12
>PRK12370 invasion protein regulator; Provisional
Probab=99.83 E-value=2.4e-18 Score=140.08 Aligned_cols=143 Identities=13% Similarity=-0.083 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q psy12642 16 YEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELF 95 (201)
Q Consensus 16 ~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 95 (201)
+++|+..++++++.+|+++.++..+|.++...|++++|+..++++++++|+++.+++.+|.++...|++++|+..+++++
T Consensus 320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al 399 (553)
T PRK12370 320 MIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECL 399 (553)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCC-cccHHHHHHHHHHHHHhhhhhhhhhh
Q psy12642 96 LHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLN-EKNIRALYGLALSCHQVLTSAKCSAA 161 (201)
Q Consensus 96 ~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~ 161 (201)
.++|.++.....++.+++..| ++++|+..+++++... |+++.++..++.++...|+.++|...
T Consensus 400 ~l~P~~~~~~~~~~~~~~~~g---~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~ 463 (553)
T PRK12370 400 KLDPTRAAAGITKLWITYYHT---GIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKL 463 (553)
T ss_pred hcCCCChhhHHHHHHHHHhcc---CHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 555555544444444445555 5555555555555443 44555555555555555555555443
No 13
>PRK12370 invasion protein regulator; Provisional
Probab=99.83 E-value=4.4e-18 Score=138.52 Aligned_cols=148 Identities=15% Similarity=-0.036 Sum_probs=136.0
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD 83 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 83 (201)
..++..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++++|.++..+..++.+++..|+
T Consensus 342 ~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~ 421 (553)
T PRK12370 342 GLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTG 421 (553)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccC
Confidence 34555677899999999999999999999999999999999999999999999999999999998877777777888999
Q ss_pred HHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhh
Q psy12642 84 YAKAVFCMEELFLHH-PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT 154 (201)
Q Consensus 84 ~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 154 (201)
+++|+..+++++... |+++..+..+|.++...| ++++|+..+.+.....|....++..++..|...|+
T Consensus 422 ~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G---~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 490 (553)
T PRK12370 422 IDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKG---KHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE 490 (553)
T ss_pred HHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCC---CHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH
Confidence 999999999999875 788999999999999999 99999999999999999999999999999998885
No 14
>KOG1125|consensus
Probab=99.82 E-value=4.8e-19 Score=137.72 Aligned_cols=156 Identities=24% Similarity=0.241 Sum_probs=125.4
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH--------------
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQE-------------- 69 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~-------------- 69 (201)
+.-++.+++.|+..+|.-.|+.++..+|.+..+|..+|.+....++-..|+..++++++++|++..
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 344555666677777777777777777777777766666666666666666666666555555543
Q ss_pred ---------------------------------------------------------------HHHHHHHHHHhcCCHHH
Q psy12642 70 ---------------------------------------------------------------TWQELCDLYLSEGDYAK 86 (201)
Q Consensus 70 ---------------------------------------------------------------~~~~l~~~~~~~~~~~~ 86 (201)
+...||.+|...|+|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 35567777888889999
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhh
Q psy12642 87 AVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAK 162 (201)
Q Consensus 87 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 162 (201)
|+.+|+.+|...|+|...|..+|-++.... +..+|+..|.+|+++.|+.++++++||.+|..+|.+++|....
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~---~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGN---RSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCc---ccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 999999999999999999999999988888 9999999999999999999999999999999999999996643
No 15
>KOG1126|consensus
Probab=99.82 E-value=2.9e-19 Score=140.80 Aligned_cols=150 Identities=12% Similarity=0.051 Sum_probs=145.1
Q ss_pred HhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHH
Q psy12642 8 IGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKA 87 (201)
Q Consensus 8 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A 87 (201)
..+.....+|.|..+|++++..+|.+..+|+.+|.+|.++++++.|.-+|++++.++|.+......+|.++.+.|+.++|
T Consensus 463 hE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~A 542 (638)
T KOG1126|consen 463 HESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKA 542 (638)
T ss_pred ChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642 88 VFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSA 160 (201)
Q Consensus 88 ~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 160 (201)
+..+++|+.++|.|+...+..|.+++..+ ++++|+..+++.-++-|++..+++.++.+|.++|+...|..
T Consensus 543 L~~~~~A~~ld~kn~l~~~~~~~il~~~~---~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~ 612 (638)
T KOG1126|consen 543 LQLYEKAIHLDPKNPLCKYHRASILFSLG---RYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALL 612 (638)
T ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhhc---chHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHH
Confidence 99999999999999999999999999999 99999999999999999999999999999999999999954
No 16
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.81 E-value=1.2e-17 Score=142.17 Aligned_cols=157 Identities=12% Similarity=-0.017 Sum_probs=142.2
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYA 85 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 85 (201)
.+..+...|++++|+.++++++..+|.+......++......|++++|+..++++++.+|+ +.++..+|.++.+.|+++
T Consensus 548 la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~d 626 (987)
T PRK09782 548 AANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVP 626 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHH
Confidence 3455678899999999999999999988877777777777779999999999999999996 899999999999999999
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHH
Q psy12642 86 KAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKE 165 (201)
Q Consensus 86 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 165 (201)
+|+..|++++..+|+++.++..+|.++...| ++++|+..|+++++.+|+++.++++++.++...|+.++|.....+.
T Consensus 627 eA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G---~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 627 AAVSDLRAALELEPNNSNYQAALGYALWDSG---DIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999 9999999999999999999999999999999999999997765554
Q ss_pred H
Q psy12642 166 I 166 (201)
Q Consensus 166 ~ 166 (201)
.
T Consensus 704 l 704 (987)
T PRK09782 704 I 704 (987)
T ss_pred H
Confidence 3
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.80 E-value=1.5e-17 Score=137.61 Aligned_cols=155 Identities=14% Similarity=0.092 Sum_probs=112.8
Q ss_pred HHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q psy12642 7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPE----AIKELTEYLKKFMTDQETWQELCDLYLSEG 82 (201)
Q Consensus 7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~----A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 82 (201)
+..+...|++++|+..++++++.+|+++.++..+|.++...|++++ |+..+++++..+|+++.++..+|.++...|
T Consensus 219 ~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g 298 (656)
T PRK15174 219 VDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTG 298 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Confidence 3445667777777777777777777777777777777777777764 677777777777777777777777777777
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhh
Q psy12642 83 DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAK 162 (201)
Q Consensus 83 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 162 (201)
++++|+..+++++..+|+++.++..+|.++...| ++++|+..|++++..+|++...+..++.++...|+.++|....
T Consensus 299 ~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G---~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l 375 (656)
T PRK15174 299 QNEKAIPLLQQSLATHPDLPYVRAMYARALRQVG---QYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVF 375 (656)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 7777777777777777777777777777777777 7777777777777777776666666677777777777776544
Q ss_pred HH
Q psy12642 163 KK 164 (201)
Q Consensus 163 ~~ 164 (201)
..
T Consensus 376 ~~ 377 (656)
T PRK15174 376 EH 377 (656)
T ss_pred HH
Confidence 43
No 18
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.80 E-value=1.2e-17 Score=122.27 Aligned_cols=156 Identities=13% Similarity=0.063 Sum_probs=137.8
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH---HHHHHHHH
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNT---AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQE---TWQELCDL 77 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~ 77 (201)
+..+..++..|++++|+..+++++..+|.++ .+++.+|.++...|++++|+..++++++.+|+++. +++.+|.+
T Consensus 37 ~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~ 116 (235)
T TIGR03302 37 YEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLS 116 (235)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHH
Confidence 4456778899999999999999999999876 57899999999999999999999999999998865 68889999
Q ss_pred HHhc--------CCHHHHHHHHHHHhhcCCCCHHHH-----------------HHHHHHHHHcCCcccHHHHHHHHHHHH
Q psy12642 78 YLSE--------GDYAKAVFCMEELFLHHPHNHLLH-----------------QRYADILYTQGGLENIELAISHYLMAI 132 (201)
Q Consensus 78 ~~~~--------~~~~~A~~~~~~al~~~~~~~~~~-----------------~~la~~~~~~~~~~~~~~A~~~~~~al 132 (201)
+... |++++|+..|++++..+|++...+ ..+|.+++..| ++.+|+..|++++
T Consensus 117 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g---~~~~A~~~~~~al 193 (235)
T TIGR03302 117 NYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRG---AYVAAINRFETVV 193 (235)
T ss_pred HHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---ChHHHHHHHHHHH
Confidence 9876 889999999999999999986542 35688889999 9999999999999
Q ss_pred cCCccc---HHHHHHHHHHHHHhhhhhhhhhhh
Q psy12642 133 NLNEKN---IRALYGLALSCHQVLTSAKCSAAK 162 (201)
Q Consensus 133 ~~~p~~---~~~~~~l~~~~~~~~~~~~a~~~~ 162 (201)
...|+. +.+++.++.++..+|++++|....
T Consensus 194 ~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~ 226 (235)
T TIGR03302 194 ENYPDTPATEEALARLVEAYLKLGLKDLAQDAA 226 (235)
T ss_pred HHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 997754 589999999999999999996543
No 19
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.79 E-value=4.7e-17 Score=117.88 Aligned_cols=153 Identities=12% Similarity=0.084 Sum_probs=141.6
Q ss_pred HHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHhcC
Q psy12642 5 VYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKF--MTDQETWQELCDLYLSEG 82 (201)
Q Consensus 5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~ 82 (201)
..+..+...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++... |.....+..+|.++...|
T Consensus 70 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 149 (234)
T TIGR02521 70 ALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAG 149 (234)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcC
Confidence 355668889999999999999999999999999999999999999999999999999853 456778899999999999
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642 83 DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSA 160 (201)
Q Consensus 83 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 160 (201)
++++|...+++++..+|+++..+..+|.++...| ++++|+.++++++...|.++..+..++.++...|+.+++..
T Consensus 150 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 224 (234)
T TIGR02521 150 DFDKAEKYLTRALQIDPQRPESLLELAELYYLRG---QYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQR 224 (234)
T ss_pred CHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999999999999999999999999999 99999999999999999889999999999999999888844
No 20
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.79 E-value=1.8e-17 Score=117.77 Aligned_cols=121 Identities=14% Similarity=0.123 Sum_probs=70.3
Q ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH-HhcCC--HHHHHHHH
Q psy12642 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLY-LSEGD--YAKAVFCM 91 (201)
Q Consensus 15 ~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~~~--~~~A~~~~ 91 (201)
+.++++..++++++.+|+++..|..+|.++...|++++|+..|+++++..|+++.++..+|.++ ...|+ +++|...+
T Consensus 54 ~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l 133 (198)
T PRK10370 54 TPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMI 133 (198)
T ss_pred hHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 3355555555555555666666666666666666666666666666666666666665555542 44444 35566666
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCccc
Q psy12642 92 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN 138 (201)
Q Consensus 92 ~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 138 (201)
+++++.+|+++.+++.+|..++..| ++++|+.+|+++++..|.+
T Consensus 134 ~~al~~dP~~~~al~~LA~~~~~~g---~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 134 DKALALDANEVTALMLLASDAFMQA---DYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCC
Confidence 6666666666666666666666666 5666666666665555543
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.79 E-value=6.5e-17 Score=133.90 Aligned_cols=156 Identities=13% Similarity=0.049 Sum_probs=144.2
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD 83 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 83 (201)
+..++.+...|++++|+..++.++...|.++.++..++.+....|++++|+..+++++..+|+++.++..+|.++...|+
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhH
Q psy12642 84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKK 163 (201)
Q Consensus 84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 163 (201)
+++|+..+++++..+|+++.++..++.++...| ++++|+..+.+++...|+++.++..++ .+...|+..+|.....
T Consensus 126 ~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g---~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 126 YATVADLAEQAWLAFSGNSQIFALHLRTLVLMD---KELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLAR 201 (656)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC---ChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHH
Confidence 999999999999999999999999999999999 999999999999999999888877664 4778899888866443
No 22
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.78 E-value=8.4e-17 Score=140.83 Aligned_cols=149 Identities=13% Similarity=0.080 Sum_probs=132.0
Q ss_pred HHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH--------------HH
Q psy12642 7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQET--------------WQ 72 (201)
Q Consensus 7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~--------------~~ 72 (201)
+..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++... ..
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 5667889999999999999999999999999999999999999999999999999999986431 23
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHh
Q psy12642 73 ELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQV 152 (201)
Q Consensus 73 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 152 (201)
..|.++...|++++|+..|++++..+|+++.++..+|.++...| ++++|+++|+++++.+|++..++..++.++..
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g---~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~- 431 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARK---DYAAAERYYQQALRMDPGNTNAVRGLANLYRQ- 431 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-
Confidence 45788899999999999999999999999999999999999999 99999999999999999999999888888754
Q ss_pred hhhhhhh
Q psy12642 153 LTSAKCS 159 (201)
Q Consensus 153 ~~~~~a~ 159 (201)
++.++|.
T Consensus 432 ~~~~~A~ 438 (1157)
T PRK11447 432 QSPEKAL 438 (1157)
T ss_pred cCHHHHH
Confidence 3445553
No 23
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.78 E-value=4.4e-17 Score=109.18 Aligned_cols=120 Identities=16% Similarity=0.102 Sum_probs=114.4
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q psy12642 21 EHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPH 100 (201)
Q Consensus 21 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 100 (201)
+.|++++..+|.+..+...+|.++...|++++|...+++++..+|+++.++..+|.++...|++++|+.++++++..+|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHH
Q psy12642 101 NHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALY 143 (201)
Q Consensus 101 ~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 143 (201)
++..++.+|.++...| ++++|+..|+++++.+|++.....
T Consensus 84 ~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~ 123 (135)
T TIGR02552 84 DPRPYFHAAECLLALG---EPESALKALDLAIEICGENPEYSE 123 (135)
T ss_pred ChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhccccchHHH
Confidence 9999999999999999 999999999999999998876443
No 24
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.78 E-value=1.9e-16 Score=123.97 Aligned_cols=155 Identities=14% Similarity=0.057 Sum_probs=110.1
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHh
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ-----ETWQELCDLYLS 80 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-----~~~~~l~~~~~~ 80 (201)
.+..+...|++++|+..|+++++.+|.+..++..++.++...|++++|+..+.++++..|.+. ..+..+|.++..
T Consensus 113 La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 192 (389)
T PRK11788 113 LGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA 192 (389)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh
Confidence 345566677777777777777777777777777777777777777777777777777666542 244556777777
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCccc-HHHHHHHHHHHHHhhhhhhhh
Q psy12642 81 EGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN-IRALYGLALSCHQVLTSAKCS 159 (201)
Q Consensus 81 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~a~ 159 (201)
.|++++|+..|++++..+|++...+..+|.++...| ++++|++.|++++..+|.+ ..++..++.+|...|+.++|.
T Consensus 193 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 269 (389)
T PRK11788 193 RGDLDAARALLKKALAADPQCVRASILLGDLALAQG---DYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGL 269 (389)
T ss_pred CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHH
Confidence 777777777777777777777777777777777777 7777777777777777654 345666777777777777775
Q ss_pred hhhH
Q psy12642 160 AAKK 163 (201)
Q Consensus 160 ~~~~ 163 (201)
....
T Consensus 270 ~~l~ 273 (389)
T PRK11788 270 EFLR 273 (389)
T ss_pred HHHH
Confidence 5433
No 25
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.78 E-value=2e-16 Score=138.50 Aligned_cols=155 Identities=15% Similarity=0.106 Sum_probs=115.2
Q ss_pred HHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH-------------
Q psy12642 7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQE------------- 73 (201)
Q Consensus 7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~------------- 73 (201)
+..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++...|+++..++.
T Consensus 468 a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~ 547 (1157)
T PRK11447 468 AEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRA 547 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHH
Confidence 3456678999999999999999999999999999999999999999999999999888877655443
Q ss_pred -------------------------------------------------------------HHHHHHhcCCHHHHHHHHH
Q psy12642 74 -------------------------------------------------------------LCDLYLSEGDYAKAVFCME 92 (201)
Q Consensus 74 -------------------------------------------------------------l~~~~~~~~~~~~A~~~~~ 92 (201)
+|.++...|++++|+..|+
T Consensus 548 Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~ 627 (1157)
T PRK11447 548 ALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQ 627 (1157)
T ss_pred HHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4455555666666666666
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHH
Q psy12642 93 ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKK 164 (201)
Q Consensus 93 ~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 164 (201)
+++..+|+++.++..++.++...| ++++|+..++++++..|+++..+..++.++...|+.++|.....+
T Consensus 628 ~al~~~P~~~~a~~~la~~~~~~g---~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 696 (1157)
T PRK11447 628 RVLTREPGNADARLGLIEVDIAQG---DLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNR 696 (1157)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 666666666666666666666666 666666666666666666666666666666666666666554433
No 26
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.77 E-value=4.4e-16 Score=117.56 Aligned_cols=96 Identities=10% Similarity=-0.025 Sum_probs=60.9
Q ss_pred HHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHH
Q psy12642 7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAK 86 (201)
Q Consensus 7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 86 (201)
+..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++++|++..++..+|.++...|++++
T Consensus 71 g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~e 150 (296)
T PRK11189 71 GVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYEL 150 (296)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 34455556666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHhhcCCCCH
Q psy12642 87 AVFCMEELFLHHPHNH 102 (201)
Q Consensus 87 A~~~~~~al~~~~~~~ 102 (201)
|+..|++++..+|+++
T Consensus 151 A~~~~~~al~~~P~~~ 166 (296)
T PRK11189 151 AQDDLLAFYQDDPNDP 166 (296)
T ss_pred HHHHHHHHHHhCCCCH
Confidence 6666666666666655
No 27
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.77 E-value=2.1e-16 Score=134.58 Aligned_cols=187 Identities=19% Similarity=0.146 Sum_probs=129.7
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYA 85 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 85 (201)
.+..+...|++++|+..|++++...|++ ..+..++.++...|++++|+..+++++...|+++.++..+|.++...|+++
T Consensus 709 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~ 787 (899)
T TIGR02917 709 EGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYD 787 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHH
Confidence 3445566777777777777777777666 555667777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHH
Q psy12642 86 KAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKE 165 (201)
Q Consensus 86 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 165 (201)
+|+..|++++..+|+++..+..+|.++...| + .+|+..+++++...|+++..+..++.++...|++++|....++.
T Consensus 788 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~---~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 863 (899)
T TIGR02917 788 KAIKHYRTVVKKAPDNAVVLNNLAWLYLELK---D-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKA 863 (899)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC---c-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777777777777777777777777777 6 66777777777777777777777777777777777776655544
Q ss_pred HHHH--hHHHHHHHHHHHHhhhcchHHHHHHHhh
Q psy12642 166 ISKQ--MMWVSKHLARQYEEQQGNTETLTELMSA 197 (201)
Q Consensus 166 ~~~~--~~~~~~~l~~~y~~~~~~~~~~~~~~~~ 197 (201)
.... .......+...|......+++...+.+.
T Consensus 864 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 864 VNIAPEAAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred HhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4321 2334445566666655555555544443
No 28
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.77 E-value=8.8e-17 Score=136.85 Aligned_cols=150 Identities=14% Similarity=0.092 Sum_probs=142.7
Q ss_pred hhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12642 11 FHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFC 90 (201)
Q Consensus 11 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 90 (201)
...|++++|+..|+++++.+|+ +.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..
T Consensus 587 ~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 587 YIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3459999999999999999997 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHH
Q psy12642 91 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKK 164 (201)
Q Consensus 91 ~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 164 (201)
|++++..+|+++.++..+|.++...| ++++|+..|+++++++|++.......+.+.....++.++......
T Consensus 666 l~~AL~l~P~~~~a~~nLA~al~~lG---d~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r 736 (987)
T PRK09782 666 LERAHKGLPDDPALIRQLAYVNQRLD---DMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGR 736 (987)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 999999999999999999999999999999999998888665543
No 29
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.77 E-value=3.2e-16 Score=133.44 Aligned_cols=155 Identities=17% Similarity=0.071 Sum_probs=102.9
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYA 85 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 85 (201)
.+..+...|++++|+..|+++++.+|.++.++..++.++...|++++|+..+++++...|++..++..++.++...|+++
T Consensus 471 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 550 (899)
T TIGR02917 471 LGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEE 550 (899)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHH
Confidence 34445566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhH
Q psy12642 86 KAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKK 163 (201)
Q Consensus 86 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 163 (201)
+|+..+++++..+|.+...+..++.++...| ++++|+..+++++...|+++..+..++.++...|++++|.....
T Consensus 551 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 625 (899)
T TIGR02917 551 EAVAWLEKAAELNPQEIEPALALAQYYLGKG---QLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFK 625 (899)
T ss_pred HHHHHHHHHHHhCccchhHHHHHHHHHHHCC---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666666666666666666666666666666 66666666666666666666666677777776666666655433
No 30
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.76 E-value=2.8e-16 Score=118.59 Aligned_cols=149 Identities=13% Similarity=0.087 Sum_probs=126.8
Q ss_pred hhhccCHHHHHHHHHHHHhcCc----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Q psy12642 10 CFHFFRYEEALEHLETIIKIDE----TNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYA 85 (201)
Q Consensus 10 ~~~~~~~~~A~~~~~~~l~~~~----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 85 (201)
....+..+.++..+.+++...| ..+..++.+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|+++
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHH
Confidence 3345677889999999997444 346789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhh
Q psy12642 86 KAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAK 162 (201)
Q Consensus 86 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 162 (201)
+|+..|+++++++|++..++..+|.+++..| ++++|++.|+++++.+|+++.....+ .+....++..+|....
T Consensus 116 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g---~~~eA~~~~~~al~~~P~~~~~~~~~-~l~~~~~~~~~A~~~l 188 (296)
T PRK11189 116 AAYEAFDSVLELDPTYNYAYLNRGIALYYGG---RYELAQDDLLAFYQDDPNDPYRALWL-YLAESKLDPKQAKENL 188 (296)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHccCCHHHHHHHH
Confidence 9999999999999999999999999999999 99999999999999999987422211 2233445566664443
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.76 E-value=1.5e-17 Score=124.85 Aligned_cols=153 Identities=19% Similarity=0.162 Sum_probs=116.6
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKID--ETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD 83 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 83 (201)
++..+...++++++...++++.... |.++.++..+|.++...|+.++|+..++++++.+|+++.+...++.++...|+
T Consensus 116 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~ 195 (280)
T PF13429_consen 116 ALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGD 195 (280)
T ss_dssp --H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC
Confidence 4445677889999999999877654 67888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhh
Q psy12642 84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAA 161 (201)
Q Consensus 84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 161 (201)
++++...++......|.++..+..+|.++...| ++++|+.+|+++++.+|+++..+..++.++...|+.++|..-
T Consensus 196 ~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg---~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~ 270 (280)
T PF13429_consen 196 YDEAREALKRLLKAAPDDPDLWDALAAAYLQLG---RYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRL 270 (280)
T ss_dssp HHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT----HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------
T ss_pred hHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccc---cccccccccccccccccccccccccccccccccccccccccc
Confidence 999888888888888888888899999999999 999999999999999999999999999999999999888543
No 32
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.76 E-value=7e-16 Score=120.78 Aligned_cols=152 Identities=16% Similarity=0.063 Sum_probs=84.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHH-----HHHHHHHH
Q psy12642 37 RKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHL-----LHQRYADI 111 (201)
Q Consensus 37 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-----~~~~la~~ 111 (201)
+..+|.++...|++++|+..++++++..|.+..++..++.++...|++++|+..+++++...|.+.. .+..+|.+
T Consensus 110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 189 (389)
T PRK11788 110 LQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQ 189 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 3444444444455555555555555444555555555555555555555555555555555444321 33455666
Q ss_pred HHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH---HhHHHHHHHHHHHHhhhcch
Q psy12642 112 LYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISK---QMMWVSKHLARQYEEQQGNT 188 (201)
Q Consensus 112 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~l~~~y~~~~~~~ 188 (201)
+...+ ++++|+..|+++++.+|++..++..++.++...|+.++|.....+.... ....+...+...|......+
T Consensus 190 ~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 266 (389)
T PRK11788 190 ALARG---DLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEA 266 (389)
T ss_pred HHhCC---CHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHH
Confidence 66666 7777777777777777777777777777777777777775544433321 11122233445555544444
Q ss_pred HHH
Q psy12642 189 ETL 191 (201)
Q Consensus 189 ~~~ 191 (201)
.++
T Consensus 267 ~A~ 269 (389)
T PRK11788 267 EGL 269 (389)
T ss_pred HHH
Confidence 433
No 33
>KOG0547|consensus
Probab=99.75 E-value=1.1e-16 Score=122.74 Aligned_cols=154 Identities=14% Similarity=0.069 Sum_probs=141.2
Q ss_pred hhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHH
Q psy12642 10 CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVF 89 (201)
Q Consensus 10 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 89 (201)
++-.|++-.|...++.++..+|.++..++.++.+|...++.++-...|+++.+++|+++++|+..|++++-.++|++|+.
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 56689999999999999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q psy12642 90 CMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEI 166 (201)
Q Consensus 90 ~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 166 (201)
.|++++.++|++...+..++.+.++.+ .+++++..|+.+++..|+.++++...+++....+++++|.....+.+
T Consensus 416 DF~Kai~L~pe~~~~~iQl~~a~Yr~~---k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 416 DFQKAISLDPENAYAYIQLCCALYRQH---KIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHhhcChhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 999999999999999999999999999 99999999999999999999999999999999999999977666554
No 34
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.75 E-value=2.9e-16 Score=111.53 Aligned_cols=149 Identities=16% Similarity=0.217 Sum_probs=125.4
Q ss_pred hHHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q psy12642 3 PIVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG 82 (201)
Q Consensus 3 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 82 (201)
+++-+..|+..|+++......+... +|.. -+...++.++++..+++.++.+|+++..|..+|.+|...|
T Consensus 19 ~~~~~~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 19 VFLCVGSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
Confidence 3445566889999988755543221 2211 1223677899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHH-HHcCCccc--HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhh
Q psy12642 83 DYAKAVFCMEELFLHHPHNHLLHQRYADIL-YTQGGLEN--IELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCS 159 (201)
Q Consensus 83 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~-~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~ 159 (201)
++++|+..|++++.++|+++..+..+|.++ ...| + +++|...++++++.+|+++.+++.+|.++...|++++|.
T Consensus 88 ~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g---~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai 164 (198)
T PRK10370 88 DYDNALLAYRQALQLRGENAELYAALATVLYYQAG---QHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAI 164 (198)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC---CCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999999999999986 5666 6 599999999999999999999999999999999999997
Q ss_pred hhhHHH
Q psy12642 160 AAKKKE 165 (201)
Q Consensus 160 ~~~~~~ 165 (201)
...++.
T Consensus 165 ~~~~~a 170 (198)
T PRK10370 165 ELWQKV 170 (198)
T ss_pred HHHHHH
Confidence 654443
No 35
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.75 E-value=1.1e-16 Score=108.24 Aligned_cols=110 Identities=8% Similarity=-0.113 Sum_probs=104.7
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYA 85 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 85 (201)
.+..+...|++++|+..|+.++..+|.+..++..+|.++...|++++|+..|++++..+|+++.+++.+|.++...|+++
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~ 109 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPG 109 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHc
Q psy12642 86 KAVFCMEELFLHHPHNHLLHQRYADILYTQ 115 (201)
Q Consensus 86 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 115 (201)
+|+..|++++...|+++..+..+|.+....
T Consensus 110 eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 110 LAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 999999999999999999999998876544
No 36
>KOG0547|consensus
Probab=99.71 E-value=1.3e-15 Score=116.97 Aligned_cols=157 Identities=18% Similarity=0.087 Sum_probs=99.6
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD 83 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 83 (201)
|-.+..|.+.++.++-...|+++...+|+++.+++.+|++.+-++++++|+..|++++.++|++.-.+..++.+.+++++
T Consensus 364 I~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k 443 (606)
T KOG0547|consen 364 IKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHK 443 (606)
T ss_pred HHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHH
Confidence 34445566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcC--------------------------------------CcccHHHHH
Q psy12642 84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQG--------------------------------------GLENIELAI 125 (201)
Q Consensus 84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~--------------------------------------~~~~~~~A~ 125 (201)
++++...|+.+++..|+.+.++...|+++...+ -.+++..|+
T Consensus 444 ~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~ 523 (606)
T KOG0547|consen 444 IAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAE 523 (606)
T ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHH
Confidence 666666666666666666666666666655555 012455666
Q ss_pred HHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642 126 SHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSA 160 (201)
Q Consensus 126 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 160 (201)
..++++++++|....++..|+++..+.|+.++|+.
T Consensus 524 ~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAie 558 (606)
T KOG0547|consen 524 NLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIE 558 (606)
T ss_pred HHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHH
Confidence 66666666666666666677777777777666644
No 37
>PLN02789 farnesyltranstransferase
Probab=99.70 E-value=2.2e-15 Score=114.16 Aligned_cols=141 Identities=13% Similarity=0.053 Sum_probs=132.9
Q ss_pred hhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH--HH
Q psy12642 10 CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKN-KIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDY--AK 86 (201)
Q Consensus 10 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~--~~ 86 (201)
+...+.+++|+..+.++++.+|.+..+|..++.++..+| ++++++..+++++..+|++..+|...+.+....|+. ++
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence 455789999999999999999999999999999999998 689999999999999999999999999999888874 78
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhh
Q psy12642 87 AVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL 153 (201)
Q Consensus 87 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 153 (201)
++.++++++..+|.|..+|..++.++...+ +++++++++.++++.+|.+..+|...+.+..+++
T Consensus 127 el~~~~kal~~dpkNy~AW~~R~w~l~~l~---~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~ 190 (320)
T PLN02789 127 ELEFTRKILSLDAKNYHAWSHRQWVLRTLG---GWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSP 190 (320)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcc
Confidence 899999999999999999999999999999 9999999999999999999999999999988763
No 38
>KOG1173|consensus
Probab=99.69 E-value=4.4e-15 Score=115.65 Aligned_cols=127 Identities=13% Similarity=0.027 Sum_probs=78.7
Q ss_pred hHHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q psy12642 3 PIVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG 82 (201)
Q Consensus 3 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 82 (201)
++..++.|.-.|++.+|..+|.++...+|....+|...|..+...|..++|+..|..+-++.|+.......+|.-|..++
T Consensus 315 W~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~ 394 (611)
T KOG1173|consen 315 WFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTN 394 (611)
T ss_pred hhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhc
Confidence 45555666666777777777777777777777777777777777776666666666666666555544555555555555
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Q psy12642 83 DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAI 132 (201)
Q Consensus 83 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al 132 (201)
+++-|..+|.+++.+.|.+|.+...+|.+.+..+ .+.+|..+|+.++
T Consensus 395 n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~---~y~~A~~~f~~~l 441 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYE---EYPEALKYFQKAL 441 (611)
T ss_pred cHHHHHHHHHHHHhcCCCcchhhhhhhheeehHh---hhHHHHHHHHHHH
Confidence 5555555555555555555555444444444444 4444444444444
No 39
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.69 E-value=1.1e-14 Score=120.18 Aligned_cols=150 Identities=11% Similarity=-0.032 Sum_probs=135.8
Q ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q psy12642 18 EALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLH 97 (201)
Q Consensus 18 ~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 97 (201)
+++.-........|.++.++..+|.+....|.+++|...++.+++..|++..++..++.++.+.+++++|+..+++++..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~ 149 (694)
T PRK15179 70 AALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG 149 (694)
T ss_pred hhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence 34444444445568889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHh
Q psy12642 98 HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQM 170 (201)
Q Consensus 98 ~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 170 (201)
+|+++..++.+|.++...| ++++|+..|++++..+|+++.++.+++.++...|+.++|.....+......
T Consensus 150 ~p~~~~~~~~~a~~l~~~g---~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 150 GSSSAREILLEAKSWDEIG---QSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred CCCCHHHHHHHHHHHHHhc---chHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 9999999999999999999 999999999999999999999999999999999999999877666654333
No 40
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.69 E-value=5.1e-15 Score=99.15 Aligned_cols=109 Identities=10% Similarity=0.046 Sum_probs=100.8
Q ss_pred HHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHH
Q psy12642 26 IIKID-ETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLL 104 (201)
Q Consensus 26 ~l~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 104 (201)
+.... ++.....+.+|..+...|++++|...|+-+...+|.+...|+.||.++..+|+|++|+..|.+++.++|+++..
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~ 105 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA 105 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence 34456 77778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc
Q psy12642 105 HQRYADILYTQGGLENIELAISHYLMAINLNEK 137 (201)
Q Consensus 105 ~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 137 (201)
+++.|.+++..| +.+.|++.|+.++.....
T Consensus 106 ~~~ag~c~L~lG---~~~~A~~aF~~Ai~~~~~ 135 (157)
T PRK15363 106 PWAAAECYLACD---NVCYAIKALKAVVRICGE 135 (157)
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHHhcc
Confidence 999999999999 999999999999988743
No 41
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.68 E-value=9.2e-15 Score=123.30 Aligned_cols=148 Identities=9% Similarity=-0.023 Sum_probs=139.7
Q ss_pred hhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHH
Q psy12642 10 CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVF 89 (201)
Q Consensus 10 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 89 (201)
..-.|++++|++.+.++...+|....++..+|.++...|++++|+..+++++...|.++.++..++.++...|++++|+.
T Consensus 25 a~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~ 104 (765)
T PRK10049 25 ALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALV 104 (765)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 44579999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhh
Q psy12642 90 CMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAA 161 (201)
Q Consensus 90 ~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 161 (201)
.+++++..+|+++. +..+|.++...| ++++|+..++++++..|+++.++..++.++...+..++|...
T Consensus 105 ~l~~~l~~~P~~~~-~~~la~~l~~~g---~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~ 172 (765)
T PRK10049 105 KAKQLVSGAPDKAN-LLALAYVYKRAG---RHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGA 172 (765)
T ss_pred HHHHHHHhCCCCHH-HHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHH
Confidence 99999999999999 999999999999 999999999999999999999999999999988887777543
No 42
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.68 E-value=9.9e-15 Score=102.44 Aligned_cols=154 Identities=14% Similarity=0.060 Sum_probs=142.4
Q ss_pred chHHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHH
Q psy12642 2 APIVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKK--FMTDQETWQELCDLYL 79 (201)
Q Consensus 2 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~ 79 (201)
+..+.+..|...|+.+.|.+.|++++..+|++..++...|..++.+|++++|...|++++.. .|.-+..|.++|.|-+
T Consensus 71 a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal 150 (250)
T COG3063 71 AHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCAL 150 (250)
T ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHh
Confidence 34567777899999999999999999999999999999999999999999999999999973 4556789999999999
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhh
Q psy12642 80 SEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKC 158 (201)
Q Consensus 80 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a 158 (201)
++|+++.|.++|++++..+|+++.....++..++..| ++-.|..++++.....+-....++..+.+-...|+-.-+
T Consensus 151 ~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~---~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a 226 (250)
T COG3063 151 KAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAG---DYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAA 226 (250)
T ss_pred hcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcc---cchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHH
Confidence 9999999999999999999999999999999999999 999999999999988888888899899999999986665
No 43
>KOG0553|consensus
Probab=99.68 E-value=1.8e-15 Score=109.94 Aligned_cols=117 Identities=21% Similarity=0.181 Sum_probs=106.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcC
Q psy12642 37 RKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQG 116 (201)
Q Consensus 37 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 116 (201)
+..-|.-+...++|.+|+..|.++|.++|+++..|...+.+|.++|.++.|++..+.++.++|....+|.++|.++..+|
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence 44556677788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhh
Q psy12642 117 GLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSA 156 (201)
Q Consensus 117 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 156 (201)
++.+|++.|++++.++|++...+.+|..+-..+++..
T Consensus 164 ---k~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 164 ---KYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ---cHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999988888888888877766
No 44
>KOG1173|consensus
Probab=99.67 E-value=3.2e-15 Score=116.46 Aligned_cols=158 Identities=13% Similarity=-0.013 Sum_probs=130.7
Q ss_pred chHHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q psy12642 2 APIVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSE 81 (201)
Q Consensus 2 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 81 (201)
++|.++..+.-.|..++|+..|..+-+.-|........+|.-|..+++++-|.++|.+++.+.|.+|-+...+|.+.+..
T Consensus 348 aWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~ 427 (611)
T KOG1173|consen 348 AWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTY 427 (611)
T ss_pred HHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehH
Confidence 57788888888888888888888888888877777777888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHhhcC----C---CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhh
Q psy12642 82 GDYAKAVFCMEELFLHH----P---HNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT 154 (201)
Q Consensus 82 ~~~~~A~~~~~~al~~~----~---~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 154 (201)
+.|.+|..+|+.++..- + .-...+.++|.++.+.+ .+++|+..|++++.+.|.++.++..+|.+|..+|+
T Consensus 428 ~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~---~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgn 504 (611)
T KOG1173|consen 428 EEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN---KYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGN 504 (611)
T ss_pred hhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh---hHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcC
Confidence 88888888888888321 1 12345788888888888 88888888888888888888888888888888888
Q ss_pred hhhhhhhh
Q psy12642 155 SAKCSAAK 162 (201)
Q Consensus 155 ~~~a~~~~ 162 (201)
.++|....
T Consensus 505 ld~Aid~f 512 (611)
T KOG1173|consen 505 LDKAIDHF 512 (611)
T ss_pred hHHHHHHH
Confidence 88886643
No 45
>KOG0553|consensus
Probab=99.67 E-value=1.7e-15 Score=110.13 Aligned_cols=108 Identities=17% Similarity=0.178 Sum_probs=103.3
Q ss_pred hhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHH
Q psy12642 9 GCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAV 88 (201)
Q Consensus 9 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~ 88 (201)
.+++.++|.+|+..|.++++.+|+++..+..++.+|.++|.++.|++.++.++.++|....+|..+|.+|..+|++++|+
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHcC
Q psy12642 89 FCMEELFLHHPHNHLLHQRYADILYTQG 116 (201)
Q Consensus 89 ~~~~~al~~~~~~~~~~~~la~~~~~~~ 116 (201)
..|++++.++|+|...+..+..+-...+
T Consensus 170 ~aykKaLeldP~Ne~~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 170 EAYKKALELDPDNESYKSNLKIAEQKLN 197 (304)
T ss_pred HHHHhhhccCCCcHHHHHHHHHHHHHhc
Confidence 9999999999999999988888777666
No 46
>KOG0624|consensus
Probab=99.66 E-value=3.6e-14 Score=105.12 Aligned_cols=155 Identities=16% Similarity=0.093 Sum_probs=137.9
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYA 85 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 85 (201)
.+..++..|++..|+..|..+++.+|++..+++++|.+|+.+|+...|+..+.+++++.|+...+....|.+++++|+++
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele 123 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELE 123 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHH
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCHHH---------------HHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Q psy12642 86 KAVFCMEELFLHHPHNHLL---------------HQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH 150 (201)
Q Consensus 86 ~A~~~~~~al~~~~~~~~~---------------~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 150 (201)
+|...|+.++..+|++... +.....-++..| +...|+.+..+.+++.|-+...+...+.||.
T Consensus 124 ~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~G---D~~~ai~~i~~llEi~~Wda~l~~~Rakc~i 200 (504)
T KOG0624|consen 124 QAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSG---DCQNAIEMITHLLEIQPWDASLRQARAKCYI 200 (504)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCC---chhhHHHHHHHHHhcCcchhHHHHHHHHHHH
Confidence 9999999999999965321 122233345567 8999999999999999999999999999999
Q ss_pred HhhhhhhhhhhhH
Q psy12642 151 QVLTSAKCSAAKK 163 (201)
Q Consensus 151 ~~~~~~~a~~~~~ 163 (201)
..|+..+|+..++
T Consensus 201 ~~~e~k~AI~Dlk 213 (504)
T KOG0624|consen 201 AEGEPKKAIHDLK 213 (504)
T ss_pred hcCcHHHHHHHHH
Confidence 9999999977554
No 47
>KOG1174|consensus
Probab=99.66 E-value=1.8e-14 Score=108.84 Aligned_cols=197 Identities=15% Similarity=0.059 Sum_probs=170.3
Q ss_pred chHHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q psy12642 2 APIVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSE 81 (201)
Q Consensus 2 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 81 (201)
.+++.+.-++..+++..|+.+-+++++.+|++..++...|.++...++.++|+-.|+.++.+.|.+.+.|..+-.+|+..
T Consensus 302 ~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~ 381 (564)
T KOG1174|consen 302 HWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQ 381 (564)
T ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhh
Confidence 35666677888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHH-HHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642 82 GDYAKAVFCMEELFLHHPHNHLLHQRYA-DILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSA 160 (201)
Q Consensus 82 ~~~~~A~~~~~~al~~~~~~~~~~~~la-~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 160 (201)
|++.+|...-+.++..-|.+...+..+| .+++... ---++|.+.++++++++|.+..+-..++..+...|.++.++.
T Consensus 382 ~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp--~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~ 459 (564)
T KOG1174|consen 382 KRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDP--RMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIK 459 (564)
T ss_pred chHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCc--hhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHH
Confidence 9999999999999999999999999887 4443222 157899999999999999999999999999999999999988
Q ss_pred hhHHHHHHHhHHHH-HHHHHHHHhhhcchHHHHHHHhhccC
Q psy12642 161 AKKKEISKQMMWVS-KHLARQYEEQQGNTETLTELMSALQV 200 (201)
Q Consensus 161 ~~~~~~~~~~~~~~-~~l~~~y~~~~~~~~~~~~~~~~~~~ 200 (201)
-..+......+.+. ..|...+...+.-.+++..+..+|.+
T Consensus 460 LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 460 LLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 77777655555444 34666677776666677777777665
No 48
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.66 E-value=6.9e-16 Score=115.82 Aligned_cols=128 Identities=23% Similarity=0.303 Sum_probs=100.1
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD 83 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 83 (201)
+.++..+.+.|++++|+..|+++++.+|+++.++..++.++...|+.+++...+....+..|+++..|..+|.++...|+
T Consensus 150 ~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~ 229 (280)
T PF13429_consen 150 LALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGR 229 (280)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccc
Confidence 44667788999999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcC
Q psy12642 84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134 (201)
Q Consensus 84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~ 134 (201)
+++|+.+|++++..+|+|+..+..+|.++...| +.++|..++.++++.
T Consensus 230 ~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g---~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 230 YEEALEYLEKALKLNPDDPLWLLAYADALEQAG---RKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------------------
T ss_pred ccccccccccccccccccccccccccccccccc---ccccccccccccccc
Confidence 999999999999999999999999999999999 999999999988764
No 49
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.65 E-value=3e-14 Score=120.20 Aligned_cols=157 Identities=17% Similarity=0.112 Sum_probs=114.3
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-------------C-
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKIDETN----TAARKRKICILKAKNKIPEAIKELTEYLKKFMT-------------D- 67 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-------------~- 67 (201)
++..+...|++++|+..|++++..+|.+ ......++.++...|++++|+..++++....|. +
T Consensus 278 la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~ 357 (765)
T PRK10049 278 VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDD 357 (765)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCch
Confidence 3455667777777777777777766654 344555666677777788887777777776652 1
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHH
Q psy12642 68 -QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLA 146 (201)
Q Consensus 68 -~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 146 (201)
..++..++.++...|++++|+..+++++...|+++.++..+|.++...| ++++|+..+++++.++|+++..++.++
T Consensus 358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g---~~~~A~~~l~~al~l~Pd~~~l~~~~a 434 (765)
T PRK10049 358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARG---WPRAAENELKKAEVLEPRNINLEVEQA 434 (765)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCCChHHHHHHH
Confidence 3455667777777888888888888888888888888888888877777 788888888888888888877788888
Q ss_pred HHHHHhhhhhhhhhhhHHH
Q psy12642 147 LSCHQVLTSAKCSAAKKKE 165 (201)
Q Consensus 147 ~~~~~~~~~~~a~~~~~~~ 165 (201)
.++...|++.+|.......
T Consensus 435 ~~al~~~~~~~A~~~~~~l 453 (765)
T PRK10049 435 WTALDLQEWRQMDVLTDDV 453 (765)
T ss_pred HHHHHhCCHHHHHHHHHHH
Confidence 8888888777775544433
No 50
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.65 E-value=1.9e-14 Score=102.74 Aligned_cols=152 Identities=15% Similarity=0.052 Sum_probs=140.1
Q ss_pred HhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHH
Q psy12642 8 IGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKA 87 (201)
Q Consensus 8 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A 87 (201)
-.+...|+-+.+.....++...+|.+..++..+|...+..|++..|+..+.++....|+++.+|..+|.+|.+.|+++.|
T Consensus 74 ~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~A 153 (257)
T COG5010 74 TALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEA 153 (257)
T ss_pred HHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHH
Confidence 44566788888888888988889999988888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhh
Q psy12642 88 VFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAK 162 (201)
Q Consensus 88 ~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 162 (201)
...|.+++++.|+++.+..++|..+.-.| +++.|..++..+....+.+..+..+++.+....|+...|....
T Consensus 154 r~ay~qAl~L~~~~p~~~nNlgms~~L~g---d~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 154 RRAYRQALELAPNEPSIANNLGMSLLLRG---DLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HHHHHHHHHhccCCchhhhhHHHHHHHcC---CHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 99999999999999999999999999999 9999999999999988889999999999999999999996533
No 51
>PLN02789 farnesyltranstransferase
Probab=99.65 E-value=1.8e-14 Score=109.20 Aligned_cols=144 Identities=13% Similarity=0.072 Sum_probs=128.9
Q ss_pred Hhhhhcc-CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Q psy12642 8 IGCFHFF-RYEEALEHLETIIKIDETNTAARKRKICILKAKNKI--PEAIKELTEYLKKFMTDQETWQELCDLYLSEGDY 84 (201)
Q Consensus 8 ~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~--~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 84 (201)
..+...| ++++++.+++++++.+|.+..+|..++.++...|+. ++++.++.++++.+|.+..+|...+.++...|++
T Consensus 79 ~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~ 158 (320)
T PLN02789 79 LCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGW 158 (320)
T ss_pred HHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhH
Confidence 3455566 689999999999999999999999999999888874 7789999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHc---CCc-ccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH
Q psy12642 85 AKAVFCMEELFLHHPHNHLLHQRYADILYTQ---GGL-ENIELAISHYLMAINLNEKNIRALYGLALSCHQ 151 (201)
Q Consensus 85 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---~~~-~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 151 (201)
++++.++.++|..+|.|..+|..++.+.... ++. ...++++.+..+++..+|++..+|.+++.++..
T Consensus 159 ~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 159 EDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKD 229 (320)
T ss_pred HHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhc
Confidence 9999999999999999999999999988766 211 123678999999999999999999999999987
No 52
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.64 E-value=2.3e-14 Score=118.25 Aligned_cols=136 Identities=16% Similarity=0.077 Sum_probs=128.0
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD 83 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 83 (201)
+..+......|.+++|...++.+++..|++..++..++.++.+.+++++|+..+++++...|+++.+.+.+|.++...|+
T Consensus 90 ~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~ 169 (694)
T PRK15179 90 VLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQ 169 (694)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcc
Confidence 44556677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHH
Q psy12642 84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRAL 142 (201)
Q Consensus 84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 142 (201)
+++|+..|++++..+|+++.++..+|.++...| +.++|...|+++++...+-.+.+
T Consensus 170 ~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G---~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 170 SEQADACFERLSRQHPEFENGYVGWAQSLTRRG---ALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhhCcchHHH
Confidence 999999999999999999999999999999999 99999999999999876655543
No 53
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.64 E-value=5.5e-14 Score=102.88 Aligned_cols=161 Identities=14% Similarity=0.041 Sum_probs=134.3
Q ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHH--
Q psy12642 29 IDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ---ETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHL-- 103 (201)
Q Consensus 29 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-- 103 (201)
.++..+..++.+|..+...|++++|+..+++++..+|+++ .+++.+|.++...|++++|+..+++++..+|+++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 4466789999999999999999999999999999999886 57899999999999999999999999999998776
Q ss_pred -HHHHHHHHHHHc--------CCcccHHHHHHHHHHHHcCCcccHHHH-----------------HHHHHHHHHhhhhhh
Q psy12642 104 -LHQRYADILYTQ--------GGLENIELAISHYLMAINLNEKNIRAL-----------------YGLALSCHQVLTSAK 157 (201)
Q Consensus 104 -~~~~la~~~~~~--------~~~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~l~~~~~~~~~~~~ 157 (201)
+++.+|.++... + ++++|++.|++++..+|++..++ ..++.+|...|++.+
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~ 184 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQT---AAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVA 184 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHH---HHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHH
Confidence 689999999876 6 89999999999999999876543 356788888899999
Q ss_pred hhhhhHHHHHHH-----hHHHHHHHHHHHHhhhcchHHHH
Q psy12642 158 CSAAKKKEISKQ-----MMWVSKHLARQYEEQQGNTETLT 192 (201)
Q Consensus 158 a~~~~~~~~~~~-----~~~~~~~l~~~y~~~~~~~~~~~ 192 (201)
|........... ...+...+...|......++++.
T Consensus 185 A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~ 224 (235)
T TIGR03302 185 AINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQD 224 (235)
T ss_pred HHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 977666555432 23455667777887777666554
No 54
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.64 E-value=2.2e-14 Score=110.78 Aligned_cols=114 Identities=11% Similarity=0.012 Sum_probs=92.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcC
Q psy12642 37 RKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQG 116 (201)
Q Consensus 37 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 116 (201)
+...|...+..|++++|+..|.+++..+|+++.++..+|.++...|++++|+..+++++.++|.++.+++.+|.+++..|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 34557777778888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhh
Q psy12642 117 GLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL 153 (201)
Q Consensus 117 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 153 (201)
++++|+..|+++++++|+++.+...++.|...+.
T Consensus 85 ---~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 85 ---EYQTAKAALEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred ---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 8888888888888888888888777777766664
No 55
>KOG2076|consensus
Probab=99.63 E-value=2e-13 Score=111.43 Aligned_cols=153 Identities=21% Similarity=0.196 Sum_probs=136.6
Q ss_pred HHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHH
Q psy12642 7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAK 86 (201)
Q Consensus 7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 86 (201)
+.-++..|++++|...+..++..+|.++.+|+.+|.+|-.+|+.+++...+-.+-.++|.+.+.|..++.....+|++.+
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHH
Confidence 33466779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc-----cHHHHHHHHHHHHHhhhhhhhhhh
Q psy12642 87 AVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK-----NIRALYGLALSCHQVLTSAKCSAA 161 (201)
Q Consensus 87 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~~~~~~a~~~ 161 (201)
|.-+|.++|+.+|.++......+.++.++| +...|+..|.+.++.+|. .....+..+..+...++-+.|...
T Consensus 226 A~~cy~rAI~~~p~n~~~~~ers~L~~~~G---~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 226 ARYCYSRAIQANPSNWELIYERSSLYQKTG---DLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHhC---hHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999999999999999999999999 999999999999999992 122345556677777766666443
Q ss_pred h
Q psy12642 162 K 162 (201)
Q Consensus 162 ~ 162 (201)
.
T Consensus 303 l 303 (895)
T KOG2076|consen 303 L 303 (895)
T ss_pred H
Confidence 3
No 56
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.61 E-value=4.2e-14 Score=109.22 Aligned_cols=111 Identities=10% Similarity=0.026 Sum_probs=104.7
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYA 85 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 85 (201)
-+..++..|+|++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++.++|+++.+++.+|.++...|+++
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 45668889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcC
Q psy12642 86 KAVFCMEELFLHHPHNHLLHQRYADILYTQG 116 (201)
Q Consensus 86 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 116 (201)
+|+..|++++.++|+++.+...++.+.....
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999888888865553
No 57
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.61 E-value=4.3e-14 Score=94.64 Aligned_cols=102 Identities=15% Similarity=0.085 Sum_probs=96.7
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD 83 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 83 (201)
+.++..++..|++++|...+++++..+|.++.++..+|.++...|++++|+..+++++..+|+++..++.+|.++...|+
T Consensus 21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 100 (135)
T TIGR02552 21 YALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGE 100 (135)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC
Confidence 45677788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCHHHH
Q psy12642 84 YAKAVFCMEELFLHHPHNHLLH 105 (201)
Q Consensus 84 ~~~A~~~~~~al~~~~~~~~~~ 105 (201)
+++|+..+++++..+|++....
T Consensus 101 ~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 101 PESALKALDLAIEICGENPEYS 122 (135)
T ss_pred HHHHHHHHHHHHHhccccchHH
Confidence 9999999999999999887644
No 58
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.59 E-value=6.8e-13 Score=104.26 Aligned_cols=184 Identities=9% Similarity=-0.035 Sum_probs=116.2
Q ss_pred hhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------------------------
Q psy12642 10 CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLK--------------------------- 62 (201)
Q Consensus 10 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--------------------------- 62 (201)
+...|++++|+..+++..+.+|+++.++..++.+|...|++++|+..+.+..+
T Consensus 163 ~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~ 242 (398)
T PRK10747 163 QLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD 242 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455566666666665555566655555555555555555555533333221
Q ss_pred ---------------hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHH
Q psy12642 63 ---------------KFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISH 127 (201)
Q Consensus 63 ---------------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~ 127 (201)
..|+++.+...++..+...|+.++|...++++++ .|.++.....++.+ ..+ +.+++++.
T Consensus 243 ~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l--~~~---~~~~al~~ 316 (398)
T PRK10747 243 QGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERLVLLIPRL--KTN---NPEQLEKV 316 (398)
T ss_pred cCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHHHHHhhc--cCC---ChHHHHHH
Confidence 1122344444455555555566666655555555 23334333333333 224 78888888
Q ss_pred HHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHhHHHH-HHHHHHHHhhhcchHHHHHHHhhcc
Q psy12642 128 YLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVS-KHLARQYEEQQGNTETLTELMSALQ 199 (201)
Q Consensus 128 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~l~~~y~~~~~~~~~~~~~~~~~~ 199 (201)
.++.++..|+++..+..+|.++...+++.+|....++....-..... ..+...+.+....+++.+.+.++|.
T Consensus 317 ~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 317 LRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88889999999999999999999999999998877666543333322 4677888888888888888877764
No 59
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.59 E-value=3.5e-13 Score=103.78 Aligned_cols=129 Identities=16% Similarity=0.097 Sum_probs=120.9
Q ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q psy12642 31 ETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYAD 110 (201)
Q Consensus 31 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 110 (201)
|....+++..+..++..|+++.|+..+...+...|+|+..+...+.++...|+.++|.+.+++++..+|+.+....++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhh
Q psy12642 111 ILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAK 162 (201)
Q Consensus 111 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 162 (201)
++...| ++.+|+..++..+..+|+++..|..|++.|..+|+..++....
T Consensus 383 all~~g---~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 383 ALLKGG---KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred HHHhcC---ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH
Confidence 999999 9999999999999999999999999999999999988885543
No 60
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.59 E-value=4.4e-13 Score=112.58 Aligned_cols=157 Identities=11% Similarity=-0.004 Sum_probs=128.9
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD 83 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 83 (201)
...++..++.|+++.|+..|+++++.+|.++.....++.++...|+.++|+.++++++.-.|........+|.++..+|+
T Consensus 38 y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 38 YDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC
Confidence 44567788999999999999999999999965544888888899999999999999994334444555555889999999
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhH
Q psy12642 84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKK 163 (201)
Q Consensus 84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 163 (201)
+++|+..|+++++.+|+++.++..++.++...+ +.++|+..++++...+|.+... ..++.++...++..+|....+
T Consensus 118 yd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~---q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~e 193 (822)
T PRK14574 118 WDQALALWQSSLKKDPTNPDLISGMIMTQADAG---RGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASS 193 (822)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcC---CHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHH
Confidence 999999999999999999999999999999999 9999999999999999985554 555555555555555544443
Q ss_pred H
Q psy12642 164 K 164 (201)
Q Consensus 164 ~ 164 (201)
+
T Consensus 194 k 194 (822)
T PRK14574 194 E 194 (822)
T ss_pred H
Confidence 3
No 61
>KOG2003|consensus
Probab=99.58 E-value=1.8e-13 Score=104.92 Aligned_cols=153 Identities=16% Similarity=0.109 Sum_probs=127.5
Q ss_pred hhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12642 11 FHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFC 90 (201)
Q Consensus 11 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 90 (201)
+..|++++|.++|+.++..+.....+++.+|..+..+|+.++|+.+|-+...+--++..++..++.+|..+.+..+|+++
T Consensus 501 f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 45688888888888888888888888888888888888888888888887777777888888888888888888888888
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHcCCc-------------------------------ccHHHHHHHHHHHHcCCcccH
Q psy12642 91 MEELFLHHPHNHLLHQRYADILYTQGGL-------------------------------ENIELAISHYLMAINLNEKNI 139 (201)
Q Consensus 91 ~~~al~~~~~~~~~~~~la~~~~~~~~~-------------------------------~~~~~A~~~~~~al~~~p~~~ 139 (201)
+-++..+-|++|..+..+|..|-..|+. .-+++|+.+|+++.-+.|+..
T Consensus 581 ~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~ 660 (840)
T KOG2003|consen 581 LMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQS 660 (840)
T ss_pred HHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHH
Confidence 8888888888888888888877766621 137899999999999999988
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhH
Q psy12642 140 RALYGLALSCHQVLTSAKCSAAKK 163 (201)
Q Consensus 140 ~~~~~l~~~~~~~~~~~~a~~~~~ 163 (201)
.-...++.|+++.|++.+|-...+
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk 684 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYK 684 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHH
Confidence 888899999999999999966443
No 62
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.58 E-value=9.3e-13 Score=96.82 Aligned_cols=155 Identities=13% Similarity=0.040 Sum_probs=125.6
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHh
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD-----QETWQELCDLYLS 80 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~~l~~~~~~ 80 (201)
.+..|+..|-+++|...|....+....-..+...+..+|-...+|++|++..++..+..|.. ..++..++..+..
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~ 192 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA 192 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh
Confidence 44557778888888888888877666667888888888888888888888888888877765 4467778888888
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCccc-HHHHHHHHHHHHHhhhhhhhh
Q psy12642 81 EGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN-IRALYGLALSCHQVLTSAKCS 159 (201)
Q Consensus 81 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~a~ 159 (201)
..+++.|+..+.++++.+|....+-..+|.+....| +|+.|++.++.+++.+|+. +.+.-.|..||.++|+..+..
T Consensus 193 ~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g---~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~ 269 (389)
T COG2956 193 SSDVDRARELLKKALQADKKCVRASIILGRVELAKG---DYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGL 269 (389)
T ss_pred hhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhcc---chHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 888888888888888888888888888888888888 8888888888888888875 457778888888888887775
Q ss_pred hhhH
Q psy12642 160 AAKK 163 (201)
Q Consensus 160 ~~~~ 163 (201)
.-..
T Consensus 270 ~fL~ 273 (389)
T COG2956 270 NFLR 273 (389)
T ss_pred HHHH
Confidence 5433
No 63
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.58 E-value=1.2e-13 Score=92.59 Aligned_cols=97 Identities=11% Similarity=0.018 Sum_probs=92.0
Q ss_pred HHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Q psy12642 5 VYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDY 84 (201)
Q Consensus 5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 84 (201)
.++..++..|++++|...|+.+...+|.+...|+.+|.++..+|++++|+..|..++.++|+++..++.+|.+++..|+.
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCH
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCC
Q psy12642 85 AKAVFCMEELFLHHPHN 101 (201)
Q Consensus 85 ~~A~~~~~~al~~~~~~ 101 (201)
+.|.+.|+.++.....+
T Consensus 120 ~~A~~aF~~Ai~~~~~~ 136 (157)
T PRK15363 120 CYAIKALKAVVRICGEV 136 (157)
T ss_pred HHHHHHHHHHHHHhccC
Confidence 99999999999887443
No 64
>KOG0550|consensus
Probab=99.58 E-value=1e-13 Score=104.65 Aligned_cols=157 Identities=22% Similarity=0.181 Sum_probs=143.8
Q ss_pred HHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH------------HHHHH
Q psy12642 7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQE------------TWQEL 74 (201)
Q Consensus 7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~------------~~~~l 74 (201)
+.++.-.|++++|...-..+++.++.+..+++..|.++...++.+.|+.+++++++++|+... .|..-
T Consensus 176 a~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~ 255 (486)
T KOG0550|consen 176 AECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKER 255 (486)
T ss_pred hhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhh
Confidence 345677899999999999999999999999999999999999999999999999999998743 56677
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCC----HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Q psy12642 75 CDLYLSEGDYAKAVFCMEELFLHHPHN----HLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH 150 (201)
Q Consensus 75 ~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 150 (201)
|+-.++.|++.+|.++|..+|.++|++ ..++.+++.+....| +..+|+...+.++.++|....++...+.|+.
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLg---rl~eaisdc~~Al~iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLG---RLREAISDCNEALKIDSSYIKALLRRANCHL 332 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccC---CchhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 888999999999999999999999976 446888899999999 9999999999999999999999999999999
Q ss_pred HhhhhhhhhhhhHHHH
Q psy12642 151 QVLTSAKCSAAKKKEI 166 (201)
Q Consensus 151 ~~~~~~~a~~~~~~~~ 166 (201)
.+++++.|....++.+
T Consensus 333 ~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAM 348 (486)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999988766554
No 65
>KOG3060|consensus
Probab=99.57 E-value=1.4e-12 Score=92.98 Aligned_cols=149 Identities=16% Similarity=0.084 Sum_probs=139.0
Q ss_pred HHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHH
Q psy12642 7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAK 86 (201)
Q Consensus 7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 86 (201)
++.....|+.+-|..++++....-|.+..+-...|..+-..|++++|+++|+..+..+|.|..++-..-.+...+|+.-+
T Consensus 59 ~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~ 138 (289)
T KOG3060|consen 59 FIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLE 138 (289)
T ss_pred HHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHH
Confidence 35566789999999999999999999999999999999999999999999999999999999888887778889999999
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhh
Q psy12642 87 AVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKC 158 (201)
Q Consensus 87 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a 158 (201)
|++.+...+...+.|+.+|..++.+|...+ ++++|.-++++.+-+.|.++..+..++.++.-+|..++-
T Consensus 139 aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~---~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~ 207 (289)
T KOG3060|consen 139 AIKELNEYLDKFMNDQEAWHELAEIYLSEG---DFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENL 207 (289)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhHh---HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999999999999999999 999999999999999999999999999999988875444
No 66
>KOG0548|consensus
Probab=99.57 E-value=3.5e-13 Score=104.66 Aligned_cols=141 Identities=21% Similarity=0.215 Sum_probs=126.1
Q ss_pred hhhhccCHHHHHHHHHHHHhcCcc--------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy12642 9 GCFHFFRYEEALEHLETIIKIDET--------------------------NTAARKRKICILKAKNKIPEAIKELTEYLK 62 (201)
Q Consensus 9 ~~~~~~~~~~A~~~~~~~l~~~~~--------------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 62 (201)
.+.+.++++.|+.+|++++....+ -..--...|..++..|+|..|+..|.++|.
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk 386 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK 386 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 466678888888888888775422 223344568889999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHH
Q psy12642 63 KFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRAL 142 (201)
Q Consensus 63 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 142 (201)
.+|+|+..|.+.|.||.+.|++..|+...+.+++++|+...++++-|.+++.+. +|++|++.|+.+++.+|++.++.
T Consensus 387 r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk---~ydkAleay~eale~dp~~~e~~ 463 (539)
T KOG0548|consen 387 RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMK---EYDKALEAYQEALELDPSNAEAI 463 (539)
T ss_pred cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCchhHHHH
Confidence 999999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHh
Q psy12642 143 YGLALSCHQV 152 (201)
Q Consensus 143 ~~l~~~~~~~ 152 (201)
..+..|....
T Consensus 464 ~~~~rc~~a~ 473 (539)
T KOG0548|consen 464 DGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHh
Confidence 9999999864
No 67
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.57 E-value=3.4e-13 Score=104.42 Aligned_cols=158 Identities=14% Similarity=-0.010 Sum_probs=126.8
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNK----IPEAIKELTEYLKKFMTDQETWQELCDLYL 79 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~----~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 79 (201)
.+.+..+...|++++|...++++++.+|++..++.. +..+...|+ ...+...+......+|....+...+|.++.
T Consensus 47 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~ 125 (355)
T cd05804 47 HVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHH
Confidence 344566778899999999999999999999877664 444444444 444444444433456667777788899999
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccH----HHHHHHHHHHHHhhhh
Q psy12642 80 SEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNI----RALYGLALSCHQVLTS 155 (201)
Q Consensus 80 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~~~~ 155 (201)
.+|++++|...+++++...|+++..+..+|.++...| ++++|+.++++++...|.++ ..++.++.++...|+.
T Consensus 126 ~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g---~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~ 202 (355)
T cd05804 126 EAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQG---RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDY 202 (355)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC---CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCH
Confidence 9999999999999999999999999999999999999 99999999999999887432 3567899999999999
Q ss_pred hhhhhhhHHH
Q psy12642 156 AKCSAAKKKE 165 (201)
Q Consensus 156 ~~a~~~~~~~ 165 (201)
++|.......
T Consensus 203 ~~A~~~~~~~ 212 (355)
T cd05804 203 EAALAIYDTH 212 (355)
T ss_pred HHHHHHHHHH
Confidence 9997755543
No 68
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.56 E-value=7.4e-13 Score=102.04 Aligned_cols=144 Identities=20% Similarity=0.133 Sum_probs=128.2
Q ss_pred HHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Q psy12642 5 VYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDY 84 (201)
Q Consensus 5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 84 (201)
-.++..+..|++++|+..++..+...|+++..+...+.+++..|+.++|.+.+++++..+|+.+..+..+|+.+++.|++
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCCh
Confidence 35667888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH
Q psy12642 85 AKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 151 (201)
Q Consensus 85 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 151 (201)
.+|+..++..+..+|+++..|..+++.+-..| +..++...+........+...+...+.....+
T Consensus 391 ~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g---~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 391 QEAIRILNRYLFNDPEDPNGWDLLAQAYAELG---NRAEALLARAEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHhC---chHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999 88888877777777666654444444444333
No 69
>KOG1129|consensus
Probab=99.56 E-value=2.3e-14 Score=105.56 Aligned_cols=148 Identities=14% Similarity=0.060 Sum_probs=125.5
Q ss_pred hhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHH
Q psy12642 10 CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVF 89 (201)
Q Consensus 10 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 89 (201)
+...+++++|.++|+.+++.+|.++.+.-.+|.-|+..++++-|+.+|.+.++..-.+++.+.++|.|++..++++-++.
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHH
Confidence 45567888888888888888888888888888888888888888888888888888888888889999998899999999
Q ss_pred HHHHHhhcCC---CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642 90 CMEELFLHHP---HNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSA 160 (201)
Q Consensus 90 ~~~~al~~~~---~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 160 (201)
.|++++..-. ....+|+++|.+....| ++..|.++|+-++..+|++..++.+|+..-.+.|+...|+.
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iG---D~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Ars 450 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIG---DFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARS 450 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEecc---chHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHH
Confidence 9998886532 34568999999888889 99999999999999999999999999999999998888854
No 70
>KOG1129|consensus
Probab=99.56 E-value=1.4e-13 Score=101.51 Aligned_cols=152 Identities=12% Similarity=0.032 Sum_probs=139.3
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYA 85 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 85 (201)
.+.+|...|.+.+|...++..++..| .+..+..++.+|.+..++..|+..+.+.++.+|.+.......+.++..+++++
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~ 307 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQE 307 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHH
Confidence 45678999999999999999998776 46788889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhh
Q psy12642 86 KAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAA 161 (201)
Q Consensus 86 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 161 (201)
+|++.|+.+++.+|.|.++...+|..|+..+ +.+-|+.+|++.+++.-.+++.+.+++.|+.--++++-....
T Consensus 308 ~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~---~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 308 DALQLYKLVLKLHPINVEAIACIAVGYFYDN---NPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHHHHHHHHHhcCCccceeeeeeeeccccCC---ChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHH
Confidence 9999999999999999999999999999999 999999999999999999999999999999988887776443
No 71
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.55 E-value=8.3e-13 Score=94.49 Aligned_cols=149 Identities=12% Similarity=0.084 Sum_probs=136.8
Q ss_pred ccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12642 13 FFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCME 92 (201)
Q Consensus 13 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 92 (201)
..+...+...+-.....+|.+..+ ..++..+...|+-+.+.....++...+|.+..+...+|......|++..|+..++
T Consensus 46 ~~q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~r 124 (257)
T COG5010 46 MRQTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLR 124 (257)
T ss_pred HHhhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 344455777777778899999999 8899999999999999999999999999999999889999999999999999999
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHH
Q psy12642 93 ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKE 165 (201)
Q Consensus 93 ~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 165 (201)
++....|+|+.+|..+|.+|...| ++++|...|.+++++.|+++.+..+++..+.-.|+.+.|.......
T Consensus 125 kA~~l~p~d~~~~~~lgaaldq~G---r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a 194 (257)
T COG5010 125 KAARLAPTDWEAWNLLGAALDQLG---RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPA 194 (257)
T ss_pred HHhccCCCChhhhhHHHHHHHHcc---ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999999999 9999999999999999999999999999999999999997755433
No 72
>KOG2002|consensus
Probab=99.53 E-value=1.8e-12 Score=106.79 Aligned_cols=134 Identities=15% Similarity=0.132 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12642 17 EEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD---QETWQELCDLYLSEGDYAKAVFCMEE 93 (201)
Q Consensus 17 ~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~ 93 (201)
..++..+..+...+|.+|.++..++.-++..|+++.+..+...++...-.. .+.++.+|.+|..+|+|++|..+|.+
T Consensus 253 ~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~ 332 (1018)
T KOG2002|consen 253 KKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYME 332 (1018)
T ss_pred HHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 333333333333344444444444444455555555555555554433221 23466777888888888888888888
Q ss_pred HhhcCCCC-HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhh
Q psy12642 94 LFLHHPHN-HLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL 153 (201)
Q Consensus 94 al~~~~~~-~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 153 (201)
+++.+|++ ...++.+|+.+...| +++.|+.+|+++++..|++.....-||..|...+
T Consensus 333 s~k~~~d~~~l~~~GlgQm~i~~~---dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~ 390 (1018)
T KOG2002|consen 333 SLKADNDNFVLPLVGLGQMYIKRG---DLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA 390 (1018)
T ss_pred HHccCCCCccccccchhHHHHHhc---hHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh
Confidence 88888777 667778888888888 8888888888888888888888888888887775
No 73
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.52 E-value=6.7e-12 Score=99.04 Aligned_cols=190 Identities=7% Similarity=-0.111 Sum_probs=142.3
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKK---------------------- 63 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---------------------- 63 (201)
++..+...|++++|...++..++..|+++.++..++.++...|++++|.+.+.+..+.
T Consensus 159 ~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 159 RTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 4555677899999999999999999999999999999999999998777766654422
Q ss_pred ----------------cC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHH--HHHHHHHHHcCCcccH
Q psy12642 64 ----------------FM----TDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLH--QRYADILYTQGGLENI 121 (201)
Q Consensus 64 ----------------~p----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~la~~~~~~~~~~~~ 121 (201)
.| +++.++..++..+...|++++|...++++++..|++.... ..........+ +.
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~---~~ 315 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPE---DN 315 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCC---Ch
Confidence 23 3566777788889999999999999999999999887532 22222223345 78
Q ss_pred HHHHHHHHHHHcCCcccH--HHHHHHHHHHHHhhhhhhhhhhhHH--HHH-HHhHHHHHHHHHHHHhhhcchHHHHHHHh
Q psy12642 122 ELAISHYLMAINLNEKNI--RALYGLALSCHQVLTSAKCSAAKKK--EIS-KQMMWVSKHLARQYEEQQGNTETLTELMS 196 (201)
Q Consensus 122 ~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~~~~~~a~~~~~~--~~~-~~~~~~~~~l~~~y~~~~~~~~~~~~~~~ 196 (201)
+.+++.++++++..|+++ ..+..+|.++.+.|++++|....++ ... .-.......+...+.+....+.+...+-+
T Consensus 316 ~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 316 EKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 899999999999999999 8888999999999999999776663 221 11112233677777777666665555544
Q ss_pred hc
Q psy12642 197 AL 198 (201)
Q Consensus 197 ~~ 198 (201)
++
T Consensus 396 ~l 397 (409)
T TIGR00540 396 SL 397 (409)
T ss_pred HH
Confidence 43
No 74
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.52 E-value=1.3e-12 Score=85.31 Aligned_cols=105 Identities=18% Similarity=0.179 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC---HHHHHHH
Q psy12642 35 AARKRKICILKAKNKIPEAIKELTEYLKKFMTD---QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHN---HLLHQRY 108 (201)
Q Consensus 35 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~l 108 (201)
..++.+|..+...|++++|+..+.+++..+|++ +.+++.+|.++...|++++|+..|++++..+|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 466778888888888888888888888888776 4677888888888888888888888888887775 5678888
Q ss_pred HHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHH
Q psy12642 109 ADILYTQGGLENIELAISHYLMAINLNEKNIRAL 142 (201)
Q Consensus 109 a~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 142 (201)
|.++...+ ++++|+.++.+++...|+++.+.
T Consensus 83 ~~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 83 GMSLQELG---DKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHhC---ChHHHHHHHHHHHHHCcCChhHH
Confidence 88888888 88888888888888888876543
No 75
>KOG1156|consensus
Probab=99.51 E-value=9.1e-13 Score=104.42 Aligned_cols=156 Identities=15% Similarity=0.155 Sum_probs=148.3
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD 83 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 83 (201)
+--++.++..++|...+...+.+++..|.++..+...|..+..+|+.++|......+++.++.+..+|.-+|.++...++
T Consensus 11 F~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~ 90 (700)
T KOG1156|consen 11 FRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKK 90 (700)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhh
Confidence 33567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhh
Q psy12642 84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAK 162 (201)
Q Consensus 84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 162 (201)
|++|+++|..|+..+|+|...+..++.....++ +++.....-.+.++..|.....|...+..+.-.|++..|....
T Consensus 91 Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmR---d~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 91 YDEAIKCYRNALKIEKDNLQILRDLSLLQIQMR---DYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 9999999999999999999999999999999999999996533
No 76
>KOG2002|consensus
Probab=99.51 E-value=3e-12 Score=105.44 Aligned_cols=185 Identities=15% Similarity=0.070 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12642 16 YEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD-QETWQELCDLYLSEGDYAKAVFCMEEL 94 (201)
Q Consensus 16 ~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a 94 (201)
++.|...|.-++...|.+..++...|.+.+..++|..|+.+|.+++..+|.. ++....+|.|+.++|..+.|+..|+++
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ra 225 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERA 225 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHH
Confidence 4788888888888888888888888888888888888888888888888766 456666788888888888888888888
Q ss_pred hhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHH-----HHHH
Q psy12642 95 FLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKE-----ISKQ 169 (201)
Q Consensus 95 l~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-----~~~~ 169 (201)
++++|.++.++..+|.+.....+...+..++..+.++...+|.+|.++..|+.-+...|++..+..-..-. ....
T Consensus 226 lqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~ 305 (1018)
T KOG2002|consen 226 LQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSI 305 (1018)
T ss_pred HhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHH
Confidence 88888888888888887776665556788888888888888888888888888888888888774422211 1122
Q ss_pred hHHHHHHHHHHHHhhhcchHHHHHHHhhccC
Q psy12642 170 MMWVSKHLARQYEEQQGNTETLTELMSALQV 200 (201)
Q Consensus 170 ~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~ 200 (201)
...+-=.+.+.|-.+.+.+.+..-|++++++
T Consensus 306 ~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~ 336 (1018)
T KOG2002|consen 306 KAESFYQLGRSYHAQGDFEKAFKYYMESLKA 336 (1018)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHcc
Confidence 3333334666676766667777777777664
No 77
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.51 E-value=7.6e-12 Score=91.64 Aligned_cols=152 Identities=11% Similarity=0.027 Sum_probs=124.0
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcCcccHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHH
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKIDETNTAAR---KRKICILKAKNKIPEAIKELTEYLKKFMTD---QETWQELCDLYL 79 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~---~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~ 79 (201)
-+..++..|+|++|++.|++++...|..+.+. +.+|.++...+++++|+..+++.++.+|++ +.+++.+|.++.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 45667788999999999999999999887554 788999999999999999999999998887 567888887764
Q ss_pred hcC---------------C---HHHHHHHHHHHhhcCCCCHHH-----------------HHHHHHHHHHcCCcccHHHH
Q psy12642 80 SEG---------------D---YAKAVFCMEELFLHHPHNHLL-----------------HQRYADILYTQGGLENIELA 124 (201)
Q Consensus 80 ~~~---------------~---~~~A~~~~~~al~~~~~~~~~-----------------~~~la~~~~~~~~~~~~~~A 124 (201)
..+ + ..+|+..|++.+...|++... -+..|..|.+.| .+..|
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~---~y~AA 194 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRG---AYVAV 194 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---chHHH
Confidence 443 1 357889999999999987532 245677888888 99999
Q ss_pred HHHHHHHHcCCcc---cHHHHHHHHHHHHHhhhhhhhhh
Q psy12642 125 ISHYLMAINLNEK---NIRALYGLALSCHQVLTSAKCSA 160 (201)
Q Consensus 125 ~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~~~~a~~ 160 (201)
+.-++.+++..|+ .+++++.+...|..+|..++|..
T Consensus 195 ~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~ 233 (243)
T PRK10866 195 VNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADK 233 (243)
T ss_pred HHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHH
Confidence 9999999998886 45788999999999998888733
No 78
>KOG1840|consensus
Probab=99.50 E-value=3.7e-12 Score=101.12 Aligned_cols=182 Identities=19% Similarity=0.091 Sum_probs=144.5
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CCC---HH
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKI--------DETNTAARKRKICILKAKNKIPEAIKELTEYLKKF-----MTD---QE 69 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----p~~---~~ 69 (201)
.+..|..+|+|+.|+..++.+++. +|.-......+|.+|..++++.+|+.+|++++.+. +++ ..
T Consensus 205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~ 284 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAA 284 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 456788999999999999999998 56555666679999999999999999999998742 333 56
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcC--------CCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCc-----
Q psy12642 70 TWQELCDLYLSEGDYAKAVFCMEELFLHH--------PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNE----- 136 (201)
Q Consensus 70 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p----- 136 (201)
++..||.+|...|++++|..++++++.+. |.-...+..++.++..++ ++++|+.++++++++.-
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~---~~Eea~~l~q~al~i~~~~~g~ 361 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMN---EYEEAKKLLQKALKIYLDAPGE 361 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHhhccc
Confidence 78889999999999999999999998753 223446788888888999 99999999999887542
Q ss_pred ---ccHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH----------hHHHHHHHHHHHHhhhcchHH
Q psy12642 137 ---KNIRALYGLALSCHQVLTSAKCSAAKKKEISKQ----------MMWVSKHLARQYEEQQGNTET 190 (201)
Q Consensus 137 ---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------~~~~~~~l~~~y~~~~~~~~~ 190 (201)
.-+....+++.+|..+|++.+|..-.++.++.. ......+|...|.+.++..++
T Consensus 362 ~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a 428 (508)
T KOG1840|consen 362 DNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEA 428 (508)
T ss_pred cchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchH
Confidence 335678899999999999999977666554322 234455677777777776653
No 79
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=4e-12 Score=93.10 Aligned_cols=120 Identities=17% Similarity=0.135 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC---HHHHHHHHH
Q psy12642 16 YEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD---YAKAVFCME 92 (201)
Q Consensus 16 ~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~---~~~A~~~~~ 92 (201)
.+..+.-++.-+..+|++..-|..+|.+|+.+|++..|...|.+++++.|++++.+..+|.+++.+.+ ..++...|+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 45555556666666666666666666666666666666666666666666666666666665554332 355666666
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCccc
Q psy12642 93 ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN 138 (201)
Q Consensus 93 ~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 138 (201)
+++..+|.|..+.+.+|..++..| +|.+|+..++..+...|.+
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g---~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQG---DYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcc---cHHHHHHHHHHHHhcCCCC
Confidence 666666666666666666666666 6666666666666666543
No 80
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.50 E-value=4.4e-12 Score=106.68 Aligned_cols=152 Identities=11% Similarity=-0.051 Sum_probs=129.5
Q ss_pred HHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHH
Q psy12642 7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAK 86 (201)
Q Consensus 7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 86 (201)
+..+...|++++|+.++++++...|........+|.++...|++++|++.|+++++.+|+++.++..++.++...++.++
T Consensus 75 l~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~e 154 (822)
T PRK14574 75 LQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGV 154 (822)
T ss_pred HHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHH
Confidence 34455679999999999999944455555555558899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhh
Q psy12642 87 AVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAK 162 (201)
Q Consensus 87 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 162 (201)
|+..+++++..+|.+... ..++.++...+ +..+|+..++++++.+|++...+..+..+....|-...|....
T Consensus 155 Al~~l~~l~~~dp~~~~~-l~layL~~~~~---~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~ 226 (822)
T PRK14574 155 VLKQATELAERDPTVQNY-MTLSYLNRATD---RNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLA 226 (822)
T ss_pred HHHHHHHhcccCcchHHH-HHHHHHHHhcc---hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 999999999999996655 55555555556 6777999999999999999999999999999999888875533
No 81
>KOG1125|consensus
Probab=99.50 E-value=4.2e-13 Score=105.06 Aligned_cols=138 Identities=12% Similarity=0.090 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12642 16 YEEALEHLETIIKIDE--TNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEE 93 (201)
Q Consensus 16 ~~~A~~~~~~~l~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 93 (201)
+..-.+.|-.+....| .++.+...+|.+|...|+|++|+.+|+.++...|+|...|..||-.+....+.++|+..|++
T Consensus 410 l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~r 489 (579)
T KOG1125|consen 410 LAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNR 489 (579)
T ss_pred HHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHH
Confidence 4455667777777788 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc----------cHHHHHHHHHHHHHhhhhh
Q psy12642 94 LFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK----------NIRALYGLALSCHQVLTSA 156 (201)
Q Consensus 94 al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~l~~~~~~~~~~~ 156 (201)
|+++.|....+++++|..+...| .|++|+++|..||.+.+. +..+|-.|-.+...+++.+
T Consensus 490 ALqLqP~yVR~RyNlgIS~mNlG---~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 490 ALQLQPGYVRVRYNLGISCMNLG---AYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred HHhcCCCeeeeehhhhhhhhhhh---hHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 99999999999999999999999 999999999999988764 1246777777777777665
No 82
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.49 E-value=1.1e-12 Score=81.24 Aligned_cols=99 Identities=19% Similarity=0.189 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHc
Q psy12642 36 ARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQ 115 (201)
Q Consensus 36 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 115 (201)
+++.+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+.++++++...|.+...+..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 45677888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCcccHHHHHHHHHHHHcCCcc
Q psy12642 116 GGLENIELAISHYLMAINLNEK 137 (201)
Q Consensus 116 ~~~~~~~~A~~~~~~al~~~p~ 137 (201)
+ +++.|...+.++++.+|.
T Consensus 82 ~---~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 G---KYEEALEAYEKALELDPN 100 (100)
T ss_pred H---hHHHHHHHHHHHHccCCC
Confidence 8 888888888888877763
No 83
>KOG2076|consensus
Probab=99.49 E-value=8.7e-12 Score=102.07 Aligned_cols=129 Identities=22% Similarity=0.160 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q psy12642 34 TAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILY 113 (201)
Q Consensus 34 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 113 (201)
...+...|...+..|++++|.+++.++|+.+|.++.+|+.||.+|..+|+.+++..++-.|-.++|.++..|..++....
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 35566677788888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHH
Q psy12642 114 TQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKE 165 (201)
Q Consensus 114 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 165 (201)
..| +++.|+-+|.+|++.+|.+.+..+..+.+|.++|+..+|.....+.
T Consensus 219 ~~~---~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l 267 (895)
T KOG2076|consen 219 QLG---NINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQL 267 (895)
T ss_pred hcc---cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 999 9999999999999999999999999999999999999997655443
No 84
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.49 E-value=4.2e-12 Score=88.20 Aligned_cols=127 Identities=17% Similarity=0.101 Sum_probs=106.4
Q ss_pred hhhccCHHHHHHHHHHHHhcCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCH
Q psy12642 10 CFHFFRYEEALEHLETIIKIDETN--TAARKRKICILKAKNKIPEAIKELTEYLKKFMTD---QETWQELCDLYLSEGDY 84 (201)
Q Consensus 10 ~~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~ 84 (201)
++-...|..+...+...+..++.+ ..++..+|.++...|++++|+..+.+++...|+. +.++..+|.++...|++
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~ 88 (168)
T CHL00033 9 NFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH 88 (168)
T ss_pred cccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCH
Confidence 344566778888887777666555 5777999999999999999999999999887764 45899999999999999
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHH-------HcCCcccHH-------HHHHHHHHHHcCCcccH
Q psy12642 85 AKAVFCMEELFLHHPHNHLLHQRYADILY-------TQGGLENIE-------LAISHYLMAINLNEKNI 139 (201)
Q Consensus 85 ~~A~~~~~~al~~~~~~~~~~~~la~~~~-------~~~~~~~~~-------~A~~~~~~al~~~p~~~ 139 (201)
++|+..+++++.++|.+...+..+|.++. ..| +++ +|+.+|++++..+|++.
T Consensus 89 ~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g---~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 89 TKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQG---DSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcc---cHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 99999999999999999999999998888 666 655 66777777888888644
No 85
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.49 E-value=6e-12 Score=90.01 Aligned_cols=150 Identities=19% Similarity=0.179 Sum_probs=121.2
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHH
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKIDETN---TAARKRKICILKAKNKIPEAIKELTEYLKKFMTD---QETWQELCDLYL 79 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~ 79 (201)
.+..++..|+|.+|+..|++++...|.+ +.+.+.+|.++...|+++.|+..+++.++.+|++ +.+++.+|.+++
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 4567889999999999999999988765 4888999999999999999999999999999987 468888888876
Q ss_pred hcC-----------CHHHHHHHHHHHhhcCCCCHHH-----------------HHHHHHHHHHcCCcccHHHHHHHHHHH
Q psy12642 80 SEG-----------DYAKAVFCMEELFLHHPHNHLL-----------------HQRYADILYTQGGLENIELAISHYLMA 131 (201)
Q Consensus 80 ~~~-----------~~~~A~~~~~~al~~~~~~~~~-----------------~~~la~~~~~~~~~~~~~~A~~~~~~a 131 (201)
.+. ...+|+..|+..+...|++..+ -+.+|..|+..| .+..|+..++.+
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~---~y~aA~~r~~~v 167 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRG---KYKAAIIRFQYV 167 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT----HHHHHHHHHHH
T ss_pred HhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---cHHHHHHHHHHH
Confidence 543 3458999999999999987542 245688889999 999999999999
Q ss_pred HcCCccc---HHHHHHHHHHHHHhhhhhhh
Q psy12642 132 INLNEKN---IRALYGLALSCHQVLTSAKC 158 (201)
Q Consensus 132 l~~~p~~---~~~~~~l~~~~~~~~~~~~a 158 (201)
++..|+. ..++..++.+|.++|....+
T Consensus 168 ~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 168 IENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 9999975 46889999999999987744
No 86
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.48 E-value=5.4e-12 Score=85.54 Aligned_cols=121 Identities=17% Similarity=0.162 Sum_probs=97.1
Q ss_pred HhhhhccCHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhc
Q psy12642 8 IGCFHFFRYEEALEHLETIIKIDETN---TAARKRKICILKAKNKIPEAIKELTEYLKKFMTD---QETWQELCDLYLSE 81 (201)
Q Consensus 8 ~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~ 81 (201)
+.....++...+...++.+...+|+. ..+.+.+|.++...|++++|...|+.++...|+. +.+...++.++..+
T Consensus 19 ~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~ 98 (145)
T PF09976_consen 19 LQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQ 98 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc
Confidence 33445788888888888888888887 4677778888889999999999999988877655 44677788889999
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Q psy12642 82 GDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAI 132 (201)
Q Consensus 82 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al 132 (201)
|++++|+..++. +...+..+..+..+|.++...| ++++|+..|++++
T Consensus 99 ~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g---~~~~A~~~y~~Al 145 (145)
T PF09976_consen 99 GQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQG---DYDEARAAYQKAL 145 (145)
T ss_pred CCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCC---CHHHHHHHHHHhC
Confidence 999999988866 3445556778888899999999 8999999988874
No 87
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.48 E-value=2.5e-11 Score=89.46 Aligned_cols=181 Identities=15% Similarity=0.104 Sum_probs=141.6
Q ss_pred HHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-----------------
Q psy12642 5 VYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD----------------- 67 (201)
Q Consensus 5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~----------------- 67 (201)
+-.+-+.-.++.++|++.|-.+++.+|....++..+|.+|...|..+.|+.+-+..++. |+-
T Consensus 40 v~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym 118 (389)
T COG2956 40 VKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYM 118 (389)
T ss_pred HhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHH
Confidence 33455666788888888888888888888888888888888888888888776664432 211
Q ss_pred ----------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCH-----HHHHHHHHHHHHcCCccc
Q psy12642 68 ----------------------QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNH-----LLHQRYADILYTQGGLEN 120 (201)
Q Consensus 68 ----------------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~la~~~~~~~~~~~ 120 (201)
..+...+..+|....+|++|+.+-++..++.+... ..++-++..+.... +
T Consensus 119 ~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~---~ 195 (389)
T COG2956 119 AAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS---D 195 (389)
T ss_pred HhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhh---h
Confidence 23455566677777788888888888888877653 35666777777777 9
Q ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHH---HHHHhHHHHHHHHHHHHhhhcchH
Q psy12642 121 IELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKE---ISKQMMWVSKHLARQYEEQQGNTE 189 (201)
Q Consensus 121 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~l~~~y~~~~~~~~ 189 (201)
.+.|+..+.++++.+|++.++-..+|.+....|++.+|......- ..++...+...|.+.|.+..+..+
T Consensus 196 ~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~ 267 (389)
T COG2956 196 VDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAE 267 (389)
T ss_pred HHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHH
Confidence 999999999999999999999999999999999999997755433 346777888889999998887766
No 88
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=2e-12 Score=94.60 Aligned_cols=111 Identities=25% Similarity=0.276 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHH
Q psy12642 50 IPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYL 129 (201)
Q Consensus 50 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~ 129 (201)
.+..+.-++.-+..+|+|.+-|..||.+|+.+|++..|...|.+++++.|+|+..+..+|.+++...+.....++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 45666677888889999999999999999999999999999999999999999999999999999988888999999999
Q ss_pred HHHcCCcccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642 130 MAINLNEKNIRALYGLALSCHQVLTSAKCSA 160 (201)
Q Consensus 130 ~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 160 (201)
+++.++|+++++.+.|+..+...|++.+|..
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~ 248 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAA 248 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHH
Confidence 9999999999999999999999999999955
No 89
>KOG0495|consensus
Probab=99.47 E-value=1.1e-11 Score=98.74 Aligned_cols=156 Identities=15% Similarity=0.018 Sum_probs=87.7
Q ss_pred HhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHH---------------------------------HHcCCHHHHH
Q psy12642 8 IGCFHFFRYEEALEHLETIIKIDETNTAARKRKICIL---------------------------------KAKNKIPEAI 54 (201)
Q Consensus 8 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~---------------------------------~~~~~~~~A~ 54 (201)
......|+...|..++.++++.+|++..+|+.-..+. ..+++.++|+
T Consensus 592 ke~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~ 671 (913)
T KOG0495|consen 592 KEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEAL 671 (913)
T ss_pred HHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHH
Confidence 3345556666666666666666666655554444444 4445555555
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcC
Q psy12642 55 KELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134 (201)
Q Consensus 55 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~ 134 (201)
.+++++++.+|+...+|..+|+++..+++.+.|...|...++..|..+.+|..++.+--..| +...|...++++.-.
T Consensus 672 rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~---~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 672 RLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG---QLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc---chhhHHHHHHHHHhc
Confidence 55555555555555555555555555555555555555555555555555555555555555 555555555555555
Q ss_pred CcccHHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q psy12642 135 NEKNIRALYGLALSCHQVLTSAKCSAAKKKEI 166 (201)
Q Consensus 135 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 166 (201)
+|.+...|.....+-.+.|+.+.|..-+.+..
T Consensus 749 NPk~~~lwle~Ir~ElR~gn~~~a~~lmakAL 780 (913)
T KOG0495|consen 749 NPKNALLWLESIRMELRAGNKEQAELLMAKAL 780 (913)
T ss_pred CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555555555555555555544433333
No 90
>KOG0548|consensus
Probab=99.47 E-value=1.6e-11 Score=95.61 Aligned_cols=145 Identities=19% Similarity=0.123 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--------------------------CCCHH
Q psy12642 16 YEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKF--------------------------MTDQE 69 (201)
Q Consensus 16 ~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------------------------p~~~~ 69 (201)
.+.|++.-.........-..+..++|..+...++++.++.+|.+++... |.-..
T Consensus 280 c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~ 359 (539)
T KOG0548|consen 280 CEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAE 359 (539)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHH
Confidence 3334443333333222234445557778888888888888888876532 22223
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Q psy12642 70 TWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSC 149 (201)
Q Consensus 70 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 149 (201)
-...-|..++..|+|..|+..|.++|..+|+++.++.++|-||...+ .+..|++..+.+++++|+...+|..-+.++
T Consensus 360 e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~---~~~~aL~Da~~~ieL~p~~~kgy~RKg~al 436 (539)
T KOG0548|consen 360 EEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLG---EYPEALKDAKKCIELDPNFIKAYLRKGAAL 436 (539)
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh---hHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 34456889999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHhhhhhhhhhhhH
Q psy12642 150 HQVLTSAKCSAAKK 163 (201)
Q Consensus 150 ~~~~~~~~a~~~~~ 163 (201)
..+.++.+|.....
T Consensus 437 ~~mk~ydkAleay~ 450 (539)
T KOG0548|consen 437 RAMKEYDKALEAYQ 450 (539)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999976543
No 91
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.47 E-value=4.8e-12 Score=88.27 Aligned_cols=105 Identities=20% Similarity=0.169 Sum_probs=94.1
Q ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHH
Q psy12642 31 ETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD---QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQR 107 (201)
Q Consensus 31 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 107 (201)
+....+++.+|..+...|++++|+.++++++...|+. ..++..+|.++...|++++|+..+++++...|.+...+..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 4556778999999999999999999999999887654 4689999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCccc--------------HHHHHHHHHHHHcCCccc
Q psy12642 108 YADILYTQGGLEN--------------IELAISHYLMAINLNEKN 138 (201)
Q Consensus 108 la~~~~~~~~~~~--------------~~~A~~~~~~al~~~p~~ 138 (201)
+|.++...+ + +++|++.+++++..+|++
T Consensus 112 lg~~~~~~g---~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 112 IAVIYHKRG---EKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHcC---ChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 999999888 5 678888888888888876
No 92
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.47 E-value=2.4e-11 Score=94.10 Aligned_cols=161 Identities=12% Similarity=-0.056 Sum_probs=130.7
Q ss_pred chHHHHHhhhhccCHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy12642 2 APIVYIIGCFHFFRYEEALEHLETIIKIDETN---TAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLY 78 (201)
Q Consensus 2 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 78 (201)
+.+..+..+...|+++.+...+.++....|.+ .......+.++...|++++|...+++++..+|++..++.. +..+
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHH
Confidence 34555666777889999999999988877644 4567778889999999999999999999999999877764 5454
Q ss_pred HhcC----CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhh
Q psy12642 79 LSEG----DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT 154 (201)
Q Consensus 79 ~~~~----~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 154 (201)
...| ....+...+......+|........+|.++...| ++++|...++++++++|+++.++..++.++...|+
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G---~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAG---QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence 4444 4455555555444667788888889999999999 99999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHH
Q psy12642 155 SAKCSAAKKKEI 166 (201)
Q Consensus 155 ~~~a~~~~~~~~ 166 (201)
.++|.....+..
T Consensus 164 ~~eA~~~l~~~l 175 (355)
T cd05804 164 FKEGIAFMESWR 175 (355)
T ss_pred HHHHHHHHHhhh
Confidence 999977655443
No 93
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.45 E-value=6.2e-12 Score=82.02 Aligned_cols=103 Identities=16% Similarity=0.119 Sum_probs=92.6
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHH
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETN---TAARKRKICILKAKNKIPEAIKELTEYLKKFMTD---QETWQELCDL 77 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~ 77 (201)
+-.+..+...|++++|+..|.+++..+|++ +.+++.+|.++...|+++.|+..+++++..+|++ +.++..+|.+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 334566889999999999999999998876 5788999999999999999999999999998885 6789999999
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCHHHHH
Q psy12642 78 YLSEGDYAKAVFCMEELFLHHPHNHLLHQ 106 (201)
Q Consensus 78 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 106 (201)
+...|++++|+.++++++...|++..+..
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 99999999999999999999999876543
No 94
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.44 E-value=8.5e-13 Score=77.87 Aligned_cols=67 Identities=22% Similarity=0.226 Sum_probs=44.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhcCC
Q psy12642 33 NTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG-DYAKAVFCMEELFLHHP 99 (201)
Q Consensus 33 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~~ 99 (201)
++.+|..+|.+++..|++++|+..|.++++.+|+++.+++.+|.++..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34556666666666666666666666666666666666666666666666 56666666666666665
No 95
>KOG0495|consensus
Probab=99.43 E-value=2.7e-11 Score=96.59 Aligned_cols=146 Identities=16% Similarity=0.070 Sum_probs=105.5
Q ss_pred ccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh------------
Q psy12642 13 FFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLS------------ 80 (201)
Q Consensus 13 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~------------ 80 (201)
.|..+.-..++++++...|.....|...+.-++..|+...|..++.++++.+|++-++|+.-..+...
T Consensus 563 hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~lla 642 (913)
T KOG0495|consen 563 HGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLA 642 (913)
T ss_pred cCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHH
Confidence 57788889999999999999999999999999999999999999999999999998877654444444
Q ss_pred ---------------------cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccH
Q psy12642 81 ---------------------EGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNI 139 (201)
Q Consensus 81 ---------------------~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 139 (201)
+++.++|+..++++++..|..+..|..+|+++-.++ +.+.|...|...++..|+.+
T Consensus 643 kar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~---~ie~aR~aY~~G~k~cP~~i 719 (913)
T KOG0495|consen 643 KARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQME---NIEMAREAYLQGTKKCPNSI 719 (913)
T ss_pred HHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHH---HHHHHHHHHHhccccCCCCc
Confidence 445555555555555556655556666666665555 56666666666666666666
Q ss_pred HHHHHHHHHHHHhhhhhhhhhh
Q psy12642 140 RALYGLALSCHQVLTSAKCSAA 161 (201)
Q Consensus 140 ~~~~~l~~~~~~~~~~~~a~~~ 161 (201)
..|..|+.+-.+.|+..+|+..
T Consensus 720 pLWllLakleEk~~~~~rAR~i 741 (913)
T KOG0495|consen 720 PLWLLLAKLEEKDGQLVRARSI 741 (913)
T ss_pred hHHHHHHHHHHHhcchhhHHHH
Confidence 6666666655555555555443
No 96
>KOG4162|consensus
Probab=99.43 E-value=6.2e-12 Score=101.47 Aligned_cols=122 Identities=17% Similarity=0.032 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHc
Q psy12642 36 ARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQ 115 (201)
Q Consensus 36 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 115 (201)
.|...+..+...++.++|..++.++-..+|..+..|+..|.++...|++++|...|..++.++|+++.....+|.++...
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~ 731 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLEL 731 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Confidence 34444455555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCcccHHHHHH--HHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642 116 GGLENIELAIS--HYLMAINLNEKNIRALYGLALSCHQVLTSAKCSA 160 (201)
Q Consensus 116 ~~~~~~~~A~~--~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 160 (201)
| +..-|.. .+..+++++|.++.+|+++|.+....|+.+.|..
T Consensus 732 G---~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 732 G---SPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAE 775 (799)
T ss_pred C---CcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHH
Confidence 5 3333333 5555555555555555555555555555554433
No 97
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.43 E-value=8.1e-13 Score=81.08 Aligned_cols=80 Identities=26% Similarity=0.281 Sum_probs=42.3
Q ss_pred ccCHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12642 13 FFRYEEALEHLETIIKIDET--NTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFC 90 (201)
Q Consensus 13 ~~~~~~A~~~~~~~l~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 90 (201)
+|++++|+.+++++++.+|. +...++.+|.+++..|++++|+..+++ ...+|.++...+.+|.++..+|++++|+.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35555555555555555553 334444455555555555555555555 445555555555555555555555555555
Q ss_pred HHH
Q psy12642 91 MEE 93 (201)
Q Consensus 91 ~~~ 93 (201)
|++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 554
No 98
>PRK15331 chaperone protein SicA; Provisional
Probab=99.43 E-value=1.3e-11 Score=83.23 Aligned_cols=107 Identities=7% Similarity=-0.093 Sum_probs=97.4
Q ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHH
Q psy12642 30 DETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYA 109 (201)
Q Consensus 30 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la 109 (201)
.++.....+..|.-++..|++++|..+|.-+...+|.+++.|..||.++..+++|++|+..|..+..++++||...+..|
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag 112 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG 112 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence 34555778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcccHHHHHHHHHHHHcCCcccHH
Q psy12642 110 DILYTQGGLENIELAISHYLMAINLNEKNIR 140 (201)
Q Consensus 110 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 140 (201)
.|+...+ +.+.|+.+|..++. .|.+..
T Consensus 113 qC~l~l~---~~~~A~~~f~~a~~-~~~~~~ 139 (165)
T PRK15331 113 QCQLLMR---KAAKARQCFELVNE-RTEDES 139 (165)
T ss_pred HHHHHhC---CHHHHHHHHHHHHh-CcchHH
Confidence 9999999 99999999999998 466443
No 99
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.42 E-value=1.3e-12 Score=77.01 Aligned_cols=68 Identities=25% Similarity=0.422 Sum_probs=63.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCc
Q psy12642 67 DQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNE 136 (201)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p 136 (201)
++.+|..+|.+++..|++++|+.+|++++..+|+++.+++.+|.++...|+ ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~--~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGK--DYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCc--cHHHHHHHHHHHHHcCc
Confidence 578899999999999999999999999999999999999999999999971 39999999999999988
No 100
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.41 E-value=5e-10 Score=88.50 Aligned_cols=126 Identities=9% Similarity=-0.032 Sum_probs=99.3
Q ss_pred HhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHhcCCHHH
Q psy12642 8 IGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ-ETWQELCDLYLSEGDYAK 86 (201)
Q Consensus 8 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~~~~~~ 86 (201)
+.-+..|+++.|.+.+.++.+..|+....+...|.+...+|+++.|..++.++.+..|++. .+....+.++...|++++
T Consensus 92 lla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 92 LLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHH
Confidence 3345578888888888888887777777777778888888888888888888888777774 455556888888888888
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCc
Q psy12642 87 AVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNE 136 (201)
Q Consensus 87 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p 136 (201)
|...++++++..|+++.++..++.++...| ++++|.+.+.+..+..+
T Consensus 172 Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~---d~~~a~~~l~~l~k~~~ 218 (409)
T TIGR00540 172 ARHGVDKLLEMAPRHKEVLKLAEEAYIRSG---AWQALDDIIDNMAKAGL 218 (409)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHcCC
Confidence 888888888888888888888888888888 88888888887776543
No 101
>KOG1127|consensus
Probab=99.41 E-value=7.1e-12 Score=103.61 Aligned_cols=151 Identities=14% Similarity=0.072 Sum_probs=127.1
Q ss_pred hhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHhcCCHHHH
Q psy12642 10 CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD--QETWQELCDLYLSEGDYAKA 87 (201)
Q Consensus 10 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~~~~~~A 87 (201)
|...-++.+|..+|+++.+.|+++..+.-..+.+|.+..+++.|..+.-..-+..|.. ...|..+|..|...+++.+|
T Consensus 502 Yrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~a 581 (1238)
T KOG1127|consen 502 YRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGA 581 (1238)
T ss_pred HHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhH
Confidence 4444477778888888888888888888888888888888888877754444444433 34577788899999999999
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhH
Q psy12642 88 VFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKK 163 (201)
Q Consensus 88 ~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 163 (201)
+..|+.++..+|.+...|..+|.+|...| ++..|++.|.++..++|.+.-+.+-.+.+...+|.+.++.....
T Consensus 582 V~~fQsALR~dPkD~n~W~gLGeAY~~sG---ry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~ 654 (1238)
T KOG1127|consen 582 VCEFQSALRTDPKDYNLWLGLGEAYPESG---RYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALG 654 (1238)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHhcC---ceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999999999999999999 99999999999999999999999999999999999999977443
No 102
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.40 E-value=8.5e-12 Score=77.24 Aligned_cols=98 Identities=20% Similarity=0.223 Sum_probs=91.2
Q ss_pred hHHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q psy12642 3 PIVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG 82 (201)
Q Consensus 3 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 82 (201)
....+..++..|++++|+..++++++..|.++.++..+|.++...+++++|+..+++++...|.+..++..+|.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 34456678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhcCCC
Q psy12642 83 DYAKAVFCMEELFLHHPH 100 (201)
Q Consensus 83 ~~~~A~~~~~~al~~~~~ 100 (201)
++++|...+.+++..+|.
T Consensus 83 ~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 83 KYEEALEAYEKALELDPN 100 (100)
T ss_pred hHHHHHHHHHHHHccCCC
Confidence 999999999999988773
No 103
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.40 E-value=2.9e-11 Score=97.34 Aligned_cols=124 Identities=18% Similarity=0.128 Sum_probs=106.2
Q ss_pred ccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHhcC
Q psy12642 13 FFRYEEALEHLETIIKIDETNTAARKRKICILKAKN--------KIPEAIKELTEYLKK--FMTDQETWQELCDLYLSEG 82 (201)
Q Consensus 13 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~--------~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~ 82 (201)
.+++.+|+.+|+++++.+|++..++-.++.++.... +...+.....+++.. +|.++.++..+|..+...|
T Consensus 355 ~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g 434 (517)
T PRK10153 355 AKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKG 434 (517)
T ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcC
Confidence 345889999999999999999999998888776542 234555555665553 7777889999999999999
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHH
Q psy12642 83 DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIR 140 (201)
Q Consensus 83 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 140 (201)
++++|...+++++.++| +..++..+|.++...| +.++|++.|++++.++|.++.
T Consensus 435 ~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G---~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 435 KTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKG---DNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred CHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCch
Confidence 99999999999999999 5889999999999999 999999999999999999774
No 104
>KOG0624|consensus
Probab=99.40 E-value=1.6e-10 Score=86.13 Aligned_cols=153 Identities=17% Similarity=0.190 Sum_probs=131.4
Q ss_pred HhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH---HHHHH-----------
Q psy12642 8 IGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ---ETWQE----------- 73 (201)
Q Consensus 8 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~----------- 73 (201)
..|...|+-.-|+..+.++++..|+...+...+|.+++.+|.+++|+..|..+++.+|++. ++...
T Consensus 80 T~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~ 159 (504)
T KOG0624|consen 80 TVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLV 159 (504)
T ss_pred HHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHH
Confidence 3466778888899999999999999999999999999999999999999999999888552 22222
Q ss_pred -HHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHh
Q psy12642 74 -LCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQV 152 (201)
Q Consensus 74 -l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 152 (201)
....+...|++..|+....+.+++.|-+...+...+.||...| +...|+.-++.+-++..++...++.++..+...
T Consensus 160 ~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~---e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~v 236 (504)
T KOG0624|consen 160 QQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEG---EPKKAIHDLKQASKLSQDNTEGHYKISQLLYTV 236 (504)
T ss_pred HHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcC---cHHHHHHHHHHHHhccccchHHHHHHHHHHHhh
Confidence 2344667889999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred hhhhhhhhhhH
Q psy12642 153 LTSAKCSAAKK 163 (201)
Q Consensus 153 ~~~~~a~~~~~ 163 (201)
|+.+.+..+..
T Consensus 237 gd~~~sL~~iR 247 (504)
T KOG0624|consen 237 GDAENSLKEIR 247 (504)
T ss_pred hhHHHHHHHHH
Confidence 99888865443
No 105
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.40 E-value=1.9e-12 Score=79.47 Aligned_cols=81 Identities=25% Similarity=0.289 Sum_probs=69.9
Q ss_pred cCCHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHH
Q psy12642 47 KNKIPEAIKELTEYLKKFMT--DQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELA 124 (201)
Q Consensus 47 ~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A 124 (201)
.|+++.|+..+++++...|. +...++.+|.+|+..|+|++|+..+++ ...+|.++...+.+|.+++.+| ++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~---~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLG---KYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT----HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhC---CHHHH
Confidence 58899999999999999985 466778889999999999999999999 8888888888888899999999 99999
Q ss_pred HHHHHHH
Q psy12642 125 ISHYLMA 131 (201)
Q Consensus 125 ~~~~~~a 131 (201)
+++|+++
T Consensus 78 i~~l~~~ 84 (84)
T PF12895_consen 78 IKALEKA 84 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHhcC
Confidence 9998875
No 106
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.40 E-value=2e-12 Score=75.38 Aligned_cols=62 Identities=24% Similarity=0.326 Sum_probs=33.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q psy12642 40 KICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHN 101 (201)
Q Consensus 40 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 101 (201)
+|..+...|++++|+..|+++++.+|+++.+|+.+|.++..+|++++|+..|++++..+|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 44555555555555555555555555555555555555555555555555555555555554
No 107
>KOG1174|consensus
Probab=99.38 E-value=6.1e-11 Score=90.12 Aligned_cols=151 Identities=15% Similarity=0.089 Sum_probs=127.0
Q ss_pred HHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHH
Q psy12642 7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAK 86 (201)
Q Consensus 7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 86 (201)
+..++..|++++|+..|+++.-.+|......-..|.++...|+++.-.......+........-|+--+...+..+++..
T Consensus 239 ak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~r 318 (564)
T KOG1174|consen 239 GKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFER 318 (564)
T ss_pred hhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHH
Confidence 34456667777777777777777777777777777777777777777666666666655556667777788888999999
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642 87 AVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSA 160 (201)
Q Consensus 87 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 160 (201)
|+.+-+++|..+|++..++...|..+...+ +.++|+-.|+.+..+.|...+.|.+|..||...|...+|..
T Consensus 319 AL~~~eK~I~~~~r~~~alilKG~lL~~~~---R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~ 389 (564)
T KOG1174|consen 319 ALNFVEKCIDSEPRNHEALILKGRLLIALE---RHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANA 389 (564)
T ss_pred HHHHHHHHhccCcccchHHHhccHHHHhcc---chHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHH
Confidence 999999999999999999999999999999 99999999999999999999999999999999999999843
No 108
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.38 E-value=3.9e-11 Score=88.60 Aligned_cols=106 Identities=16% Similarity=0.190 Sum_probs=87.6
Q ss_pred cHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC---HHHH
Q psy12642 33 NTAARKRKICIL-KAKNKIPEAIKELTEYLKKFMTD---QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHN---HLLH 105 (201)
Q Consensus 33 ~~~~~~~~a~~~-~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~ 105 (201)
+....+..+..+ ...|++++|+..|+..++.+|++ +.+++.+|.+|+..|++++|+..|++++...|++ +.++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 345556666654 56789999999999999999988 5788899999999999999999999999887764 6678
Q ss_pred HHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHH
Q psy12642 106 QRYADILYTQGGLENIELAISHYLMAINLNEKNIRA 141 (201)
Q Consensus 106 ~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 141 (201)
+.+|.++...| ++++|+..|+++++..|+...+
T Consensus 221 ~klg~~~~~~g---~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 221 FKVGVIMQDKG---DTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHHCcCCHHH
Confidence 88899988888 9999999999999999887654
No 109
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.37 E-value=1.4e-11 Score=92.36 Aligned_cols=146 Identities=21% Similarity=0.101 Sum_probs=118.2
Q ss_pred HHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC--
Q psy12642 5 VYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG-- 82 (201)
Q Consensus 5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-- 82 (201)
+-+..++..|++++|++.+++. .+..+......+++..++++.|.+.++...+.+.++.-.....+.+.+..|
T Consensus 107 ~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 107 LAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCch
Confidence 3445577789999999888764 567777888899999999999999999988877665544444444444455
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhh
Q psy12642 83 DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKC 158 (201)
Q Consensus 83 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a 158 (201)
++.+|...|++.....|.++..+..++.++...| ++++|.+.+++++..+|+++.++.+++.|...+|+...+
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~---~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~ 254 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLG---HYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEA 254 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT----HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhH
Confidence 6999999999998888899999999999999999 999999999999999999999999999999999987444
No 110
>KOG1128|consensus
Probab=99.37 E-value=9.2e-12 Score=100.03 Aligned_cols=146 Identities=12% Similarity=0.035 Sum_probs=95.9
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYA 85 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 85 (201)
.+.+|...|+..+|..+..+-++ .|.++..|..+|.+.....-+++|.+..+.. +..+...+|......++|+
T Consensus 430 vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs 502 (777)
T KOG1128|consen 430 VILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFS 502 (777)
T ss_pred HHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHH
Confidence 35667777888888888888777 4555555555555544433344443333322 1224455555555667777
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhh
Q psy12642 86 KAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAA 161 (201)
Q Consensus 86 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 161 (201)
++.++++..++++|-....|+.+|.+....+ +++.|.++|..++.++|++..+|.+++..|.++++..+|-..
T Consensus 503 ~~~~hle~sl~~nplq~~~wf~~G~~ALqle---k~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~ 575 (777)
T KOG1128|consen 503 EADKHLERSLEINPLQLGTWFGLGCAALQLE---KEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRK 575 (777)
T ss_pred HHHHHHHHHhhcCccchhHHHhccHHHHHHh---hhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHH
Confidence 7777777777777777777777777777777 777777777777777777777777777777777777776443
No 111
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.36 E-value=4.1e-12 Score=74.01 Aligned_cols=64 Identities=28% Similarity=0.436 Sum_probs=60.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccH
Q psy12642 73 ELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNI 139 (201)
Q Consensus 73 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 139 (201)
.+|..++..|++++|+..|++++..+|+++.+++.+|.++...| ++++|+.+|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g---~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQG---RYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHCcCCC
Confidence 57899999999999999999999999999999999999999999 99999999999999999875
No 112
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.36 E-value=1.3e-10 Score=91.47 Aligned_cols=140 Identities=13% Similarity=0.066 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q psy12642 17 EEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFL 96 (201)
Q Consensus 17 ~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 96 (201)
+...+.++..-...|+++.+...++..+...|+.++|...+++.++ .|.++......+.+ ..++.+++++.+++.++
T Consensus 246 ~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk 322 (398)
T PRK10747 246 EGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERLVLLIPRL--KTNNPEQLEKVLRQQIK 322 (398)
T ss_pred HHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHHHHHhhc--cCCChHHHHHHHHHHHh
Confidence 3344444444445577999999999999999999999999999999 45566655555544 45999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhH
Q psy12642 97 HHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKK 163 (201)
Q Consensus 97 ~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 163 (201)
.+|+|+..+..+|.++...+ ++++|.++|+++++..|++.. +..++.++.+.|+.++|....+
T Consensus 323 ~~P~~~~l~l~lgrl~~~~~---~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~ 385 (398)
T PRK10747 323 QHGDTPLLWSTLGQLLMKHG---EWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRR 385 (398)
T ss_pred hCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999 999999999999999999654 6789999999999999955444
No 113
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.36 E-value=9.7e-11 Score=86.54 Aligned_cols=90 Identities=16% Similarity=0.137 Sum_probs=44.7
Q ss_pred ccCHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHH
Q psy12642 13 FFRYEEALEHLETIIKIDETN---TAARKRKICILKAKNKIPEAIKELTEYLKKFMTD---QETWQELCDLYLSEGDYAK 86 (201)
Q Consensus 13 ~~~~~~A~~~~~~~l~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~ 86 (201)
.|+|++|+..|+.++...|++ +.+++.+|.+|+..|++++|+..|.+++..+|++ +++++.+|.++...|++++
T Consensus 156 ~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~ 235 (263)
T PRK10803 156 KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAK 235 (263)
T ss_pred cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHH
Confidence 345555555555555555444 2445555555555555555555555555444442 3444444555555555555
Q ss_pred HHHHHHHHhhcCCCCH
Q psy12642 87 AVFCMEELFLHHPHNH 102 (201)
Q Consensus 87 A~~~~~~al~~~~~~~ 102 (201)
|...|++++...|++.
T Consensus 236 A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 236 AKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHHHCcCCH
Confidence 5555555555555443
No 114
>KOG4162|consensus
Probab=99.35 E-value=3.7e-11 Score=97.06 Aligned_cols=132 Identities=19% Similarity=0.122 Sum_probs=124.7
Q ss_pred HHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Q psy12642 5 VYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDY 84 (201)
Q Consensus 5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 84 (201)
..+..+...++.++|..++.++-..+|..+..++..|.++...|++.+|...|..++.++|+++.....+|.++...|+.
T Consensus 655 laa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~ 734 (799)
T KOG4162|consen 655 LAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSP 734 (799)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCc
Confidence 44556677889999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHH--HHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccH
Q psy12642 85 AKAVF--CMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNI 139 (201)
Q Consensus 85 ~~A~~--~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 139 (201)
.-|.. .+..+++.+|.++.+|+.+|.++...| +.+.|.++|..++++.+.+|
T Consensus 735 ~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~G---d~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 735 RLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLG---DSKQAAECFQAALQLEESNP 788 (799)
T ss_pred chHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc---chHHHHHHHHHHHhhccCCC
Confidence 88887 999999999999999999999999999 99999999999999998766
No 115
>KOG0543|consensus
Probab=99.34 E-value=7.7e-11 Score=89.42 Aligned_cols=119 Identities=18% Similarity=0.168 Sum_probs=104.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q psy12642 37 RKRKICILKAKNKIPEAIKELTEYLKKFMTD---------------QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHN 101 (201)
Q Consensus 37 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 101 (201)
....|..+++.|+|..|...|++++..-+.+ ..++.+++.++.++++|.+|+...+++|.++|+|
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N 290 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN 290 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 3456888999999999999999988753311 2367889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhh
Q psy12642 102 HLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKC 158 (201)
Q Consensus 102 ~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a 158 (201)
..++++.|.++...+ +++.|+..|+++++++|+|-.+...+..|-.+...+...
T Consensus 291 ~KALyRrG~A~l~~~---e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~k 344 (397)
T KOG0543|consen 291 VKALYRRGQALLALG---EYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEK 344 (397)
T ss_pred hhHHHHHHHHHHhhc---cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 999999999999999999999999999888877665544
No 116
>KOG1840|consensus
Probab=99.34 E-value=2.2e-10 Score=91.23 Aligned_cols=182 Identities=16% Similarity=0.153 Sum_probs=140.7
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-----CC---HH
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKI--------DETNTAARKRKICILKAKNKIPEAIKELTEYLKKFM-----TD---QE 69 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-----~~---~~ 69 (201)
++..|..+++|++|+..|++++.. +|.-..++..++.+|...|++++|..++++++.+.. .. ..
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 566788999999999999999985 355568899999999999999999999999987532 22 44
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcC-----CCC---HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCC------
Q psy12642 70 TWQELCDLYLSEGDYAKAVFCMEELFLHH-----PHN---HLLHQRYADILYTQGGLENIELAISHYLMAINLN------ 135 (201)
Q Consensus 70 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----~~~---~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~------ 135 (201)
.+..++.++..++++++|+.++++++++. +.+ +....++|.+++.+| ++++|.+.|++++++.
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~g---k~~ea~~~~k~ai~~~~~~~~~ 403 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMG---KYKEAEELYKKAIQILRELLGK 403 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHhcccC
Confidence 56778899999999999999999998752 233 457899999999999 9999999999999765
Q ss_pred --cccHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH---------HhHHHHHHHHHHHHhhhcchHH
Q psy12642 136 --EKNIRALYGLALSCHQVLTSAKCSAAKKKEISK---------QMMWVSKHLARQYEEQQGNTET 190 (201)
Q Consensus 136 --p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~~l~~~y~~~~~~~~~ 190 (201)
+.....+++++..|.+.+.+.+|..-......= -.......|...|+.+..-+.+
T Consensus 404 ~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a 469 (508)
T KOG1840|consen 404 KDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAA 469 (508)
T ss_pred cChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHH
Confidence 233567889999999999988885533222110 1112334577778777766663
No 117
>PRK11906 transcriptional regulator; Provisional
Probab=99.33 E-value=2.6e-10 Score=88.52 Aligned_cols=123 Identities=12% Similarity=-0.003 Sum_probs=113.3
Q ss_pred CHHHHHHHHHHHH---hcCcccHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q psy12642 15 RYEEALEHLETII---KIDETNTAARKRKICILKAK---------NKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG 82 (201)
Q Consensus 15 ~~~~A~~~~~~~l---~~~~~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 82 (201)
....|+.+|.+++ +.+|....++..++.+++.. .+..+|.+..+++++++|.|+.+...+|.+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 5678999999999 99999999999999988764 23567888999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHH
Q psy12642 83 DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIR 140 (201)
Q Consensus 83 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 140 (201)
+++.|...|++++.++|+.+.+++..|.+....| +.++|++.++++++++|.-..
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G---~~~~a~~~i~~alrLsP~~~~ 407 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNE---KIEEARICIDKSLQLEPRRRK 407 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcC---CHHHHHHHHHHHhccCchhhH
Confidence 9999999999999999999999999999999999 999999999999999997544
No 118
>KOG0550|consensus
Probab=99.32 E-value=4.3e-11 Score=90.74 Aligned_cols=131 Identities=15% Similarity=0.104 Sum_probs=117.8
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC----
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNT------------AARKRKICILKAKNKIPEAIKELTEYLKKFMTD---- 67 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---- 67 (201)
.|...++.-..+.+.|+..|++++..+|++. ..+...|.-.+..|++..|.+.|..+|.++|++
T Consensus 207 ~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~n 286 (486)
T KOG0550|consen 207 YVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTN 286 (486)
T ss_pred HhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchh
Confidence 4455667778999999999999999999875 456677888899999999999999999999987
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc
Q psy12642 68 QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK 137 (201)
Q Consensus 68 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 137 (201)
...|..++.+..+.|+..+|+...+.++.++|....++...|.|+...+ ++++|++.|+++++...+
T Consensus 287 aklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le---~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 287 AKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALE---KWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhccc
Confidence 4467778899999999999999999999999999999999999999999 999999999999988765
No 119
>KOG2003|consensus
Probab=99.31 E-value=7.3e-10 Score=85.53 Aligned_cols=144 Identities=19% Similarity=0.129 Sum_probs=109.9
Q ss_pred HhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC-----
Q psy12642 8 IGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG----- 82 (201)
Q Consensus 8 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~----- 82 (201)
+.+..+|+.++|+++|-+...+--++..++..++.+|..+.+..+|++++.++..+-|++|.++..+|.+|-+.|
T Consensus 532 lt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqa 611 (840)
T KOG2003|consen 532 LTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQA 611 (840)
T ss_pred ccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhh
Confidence 344556666666666666666666666666666666666666666666666666666666666666666555554
Q ss_pred -----------------------------CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHc
Q psy12642 83 -----------------------------DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAIN 133 (201)
Q Consensus 83 -----------------------------~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~ 133 (201)
=+++|+.+|+++..+.|+...--..++.|+.+.| +|++|.+.|+...+
T Consensus 612 fq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsg---nyqka~d~yk~~hr 688 (840)
T KOG2003|consen 612 FQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSG---NYQKAFDLYKDIHR 688 (840)
T ss_pred hhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHH
Confidence 4578889999998889988777788899999999 99999999999999
Q ss_pred CCcccHHHHHHHHHHHHHhhh
Q psy12642 134 LNEKNIRALYGLALSCHQVLT 154 (201)
Q Consensus 134 ~~p~~~~~~~~l~~~~~~~~~ 154 (201)
..|.+..++.-|..+...+|-
T Consensus 689 kfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 689 KFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred hCccchHHHHHHHHHhccccc
Confidence 999999999999988888774
No 120
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.31 E-value=1.7e-10 Score=80.44 Aligned_cols=97 Identities=18% Similarity=0.178 Sum_probs=85.2
Q ss_pred HHHHhhhhccCHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q psy12642 5 VYIIGCFHFFRYEEALEHLETIIKIDETN---TAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSE 81 (201)
Q Consensus 5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 81 (201)
-.+..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..+.+++...|++...+..+|.++...
T Consensus 40 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 119 (172)
T PRK02603 40 RDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKR 119 (172)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence 34566788999999999999999877653 478999999999999999999999999999999999999999999998
Q ss_pred CC--------------HHHHHHHHHHHhhcCCCC
Q psy12642 82 GD--------------YAKAVFCMEELFLHHPHN 101 (201)
Q Consensus 82 ~~--------------~~~A~~~~~~al~~~~~~ 101 (201)
|+ +++|+.++++++..+|++
T Consensus 120 g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 120 GEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred CChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 87 577778888888878776
No 121
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=99.31 E-value=2.2e-10 Score=88.81 Aligned_cols=115 Identities=23% Similarity=0.183 Sum_probs=96.5
Q ss_pred hhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHH
Q psy12642 10 CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVF 89 (201)
Q Consensus 10 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 89 (201)
+...++++.|+..+++..+.+|+ +...++.++...++..+|+..++++++..|.+...+...+..+...++++.|+.
T Consensus 179 l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~ 255 (395)
T PF09295_consen 179 LSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALE 255 (395)
T ss_pred HhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 34467888888888888887765 455678888888888888888888888888888888888888888888999999
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHH
Q psy12642 90 CMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLM 130 (201)
Q Consensus 90 ~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~ 130 (201)
+.++++...|++...|+.++.+|...| +++.|+-.++.
T Consensus 256 iAk~av~lsP~~f~~W~~La~~Yi~~~---d~e~ALlaLNs 293 (395)
T PF09295_consen 256 IAKKAVELSPSEFETWYQLAECYIQLG---DFENALLALNS 293 (395)
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHhcC---CHHHHHHHHhc
Confidence 999999889988888999999988888 88888877663
No 122
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.30 E-value=8e-10 Score=88.77 Aligned_cols=154 Identities=19% Similarity=0.050 Sum_probs=106.5
Q ss_pred HHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC----
Q psy12642 7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG---- 82 (201)
Q Consensus 7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~---- 82 (201)
+.-+...|++++|++++++....-.+...+...+|.++..+|++++|...|...++.+|++...+..+..+.....
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccc
Confidence 3456677888888888888777777777888888888888888888888888888888888776666555541111
Q ss_pred -CHHHHHHHHH--------------------------------------------------------------HHh----
Q psy12642 83 -DYAKAVFCME--------------------------------------------------------------ELF---- 95 (201)
Q Consensus 83 -~~~~A~~~~~--------------------------------------------------------------~al---- 95 (201)
+.+.-...|+ ..+
T Consensus 91 ~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~ 170 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYV 170 (517)
T ss_pred ccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHH
Confidence 1111000000 110
Q ss_pred ---hc------------CCCCH--HHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhh
Q psy12642 96 ---LH------------HPHNH--LLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKC 158 (201)
Q Consensus 96 ---~~------------~~~~~--~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a 158 (201)
.. .|... .+++.+++.+...| ++++|+++.+++|...|..+..+...|.++.+.|+..+|
T Consensus 171 ~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g---~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~A 247 (517)
T PF12569_consen 171 NSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLG---DYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEA 247 (517)
T ss_pred HhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 00 01111 24577788888888 888888888888888888888888888888888888888
Q ss_pred hhhhH
Q psy12642 159 SAAKK 163 (201)
Q Consensus 159 ~~~~~ 163 (201)
.....
T Consensus 248 a~~~~ 252 (517)
T PF12569_consen 248 AEAMD 252 (517)
T ss_pred HHHHH
Confidence 66443
No 123
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.30 E-value=3e-10 Score=78.87 Aligned_cols=142 Identities=17% Similarity=0.073 Sum_probs=100.9
Q ss_pred CCHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC---HHHHHHHHHHHHHcCCcccHH
Q psy12642 48 NKIPEAIKELTEYLKKFMTD--QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHN---HLLHQRYADILYTQGGLENIE 122 (201)
Q Consensus 48 ~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~~~ 122 (201)
+.+..+...+...++..+.+ ..+++.+|.++...|++++|+..|++++.+.|+. +.++..+|.++...| +++
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g---~~~ 89 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNG---EHT 89 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcC---CHH
Confidence 33555555665555555555 6678999999999999999999999999887653 458999999999999 999
Q ss_pred HHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHhHHHHHHHHHHHHhhhcchHHHHH
Q psy12642 123 LAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYEEQQGNTETLTE 193 (201)
Q Consensus 123 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~~~~~ 193 (201)
+|+..+++++.++|.....+..++.++...|........ ...+......+...+.+.+....++...+..
T Consensus 90 eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~-~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~ 159 (168)
T CHL00033 90 KALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGD-SEIAEAWFDQAAEYWKQAIALAPGNYIEAQN 159 (168)
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHccc-HHHHHHHHHHHHHHHHHHHHhCcccHHHHHH
Confidence 999999999999999999999999999965543221111 1112233334444445555544444333333
No 124
>PRK15331 chaperone protein SicA; Provisional
Probab=99.29 E-value=1e-10 Score=78.96 Aligned_cols=98 Identities=14% Similarity=0.019 Sum_probs=90.9
Q ss_pred HHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Q psy12642 5 VYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDY 84 (201)
Q Consensus 5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 84 (201)
.++..++..|++++|..+|.-+...+|.++..+..+|.++..++++++|+..|..+..+.++||...+..|.||+..|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCHH
Q psy12642 85 AKAVFCMEELFLHHPHNHL 103 (201)
Q Consensus 85 ~~A~~~~~~al~~~~~~~~ 103 (201)
+.|..+|+.++. .|.+..
T Consensus 122 ~~A~~~f~~a~~-~~~~~~ 139 (165)
T PRK15331 122 AKARQCFELVNE-RTEDES 139 (165)
T ss_pred HHHHHHHHHHHh-CcchHH
Confidence 999999999998 455433
No 125
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.29 E-value=1.9e-10 Score=96.65 Aligned_cols=133 Identities=17% Similarity=0.047 Sum_probs=115.9
Q ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCH------
Q psy12642 29 IDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNH------ 102 (201)
Q Consensus 29 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~------ 102 (201)
.+|.+..++..++..+...|++++|+..++..++.+|+...+++.+|.++...+++.++.-. .++...+.+.
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVE 103 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHH
Confidence 45888899999999999999999999999999999999999999999999998888777665 5555555554
Q ss_pred -------------HHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHH
Q psy12642 103 -------------LLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEIS 167 (201)
Q Consensus 103 -------------~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 167 (201)
.+++.+|.||-.+| +.++|...|+++++.+|+++.++.++|-.|... +.++|..-.++.+.
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g---~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLN---ENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIY 177 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 89999999999999 999999999999999999999999999999999 99999775555443
No 126
>KOG0543|consensus
Probab=99.28 E-value=1.8e-10 Score=87.45 Aligned_cols=126 Identities=13% Similarity=0.048 Sum_probs=109.7
Q ss_pred HhhhhccCHHHHHHHHHHHHhcCcc----c-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q psy12642 8 IGCFHFFRYEEALEHLETIIKIDET----N-----------TAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQ 72 (201)
Q Consensus 8 ~~~~~~~~~~~A~~~~~~~l~~~~~----~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 72 (201)
..+++.|+|..|...|++++..-+. + ..++..++.|+..++++..|+...++++..+|+|..+++
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALy 295 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALY 295 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHH
Confidence 4589999999999999998874321 1 267889999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccH-HHHHHHHHHHHcCCc
Q psy12642 73 ELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENI-ELAISHYLMAINLNE 136 (201)
Q Consensus 73 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~-~~A~~~~~~al~~~p 136 (201)
..|.++...|+|+.|+..|+++++++|+|..+...+..+-.+.. .+ +...+.|.+.+..-+
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~---~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIR---EYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999888888776666 44 445788888887655
No 127
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.28 E-value=7.2e-10 Score=93.23 Aligned_cols=189 Identities=15% Similarity=0.089 Sum_probs=136.8
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-----------------
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ----------------- 68 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~----------------- 68 (201)
.+..+...+++++|+..++..++..|+...+++.+|.++...+++.++... .++...+.+.
T Consensus 37 Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~ 114 (906)
T PRK14720 37 LIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGE 114 (906)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhh
Confidence 445556899999999999999999999999999999999998887766555 5555555554
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHH--------------
Q psy12642 69 --ETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAI-------------- 132 (201)
Q Consensus 69 --~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al-------------- 132 (201)
.+++.+|.||-++|++++|...++++++.+|.|+.++.++|..+... +.++|+.++.+|+
T Consensus 115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~----dL~KA~~m~~KAV~~~i~~kq~~~~~e 190 (906)
T PRK14720 115 NKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE----DKEKAITYLKKAIYRFIKKKQYVGIEE 190 (906)
T ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHhhhcchHHHH
Confidence 89999999999999999999999999999999999999999887665 3555555555554
Q ss_pred ------cCCcccHHHH--------------------HHHHHHHHHhhhhhhhhhhhHHHH--HHHhHHHHHHHHHHHHhh
Q psy12642 133 ------NLNEKNIRAL--------------------YGLALSCHQVLTSAKCSAAKKKEI--SKQMMWVSKHLARQYEEQ 184 (201)
Q Consensus 133 ------~~~p~~~~~~--------------------~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~l~~~y~~~ 184 (201)
..+|++...+ .-+-.+|...++++++..-.+... ..--.++...+...|++.
T Consensus 191 ~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~k 270 (906)
T PRK14720 191 IWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEK 270 (906)
T ss_pred HHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHH
Confidence 4445433321 122255666666666644333322 122345666777778866
Q ss_pred hcchHHHHHHHhhccC
Q psy12642 185 QGNTETLTELMSALQV 200 (201)
Q Consensus 185 ~~~~~~~~~~~~~~~~ 200 (201)
=.+..-++++++-.+|
T Consensus 271 Y~~~~~~ee~l~~s~l 286 (906)
T PRK14720 271 YKDHSLLEDYLKMSDI 286 (906)
T ss_pred ccCcchHHHHHHHhcc
Confidence 6665677777766555
No 128
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.26 E-value=1.6e-09 Score=73.45 Aligned_cols=117 Identities=20% Similarity=0.138 Sum_probs=100.4
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC---HHHHHHHHHHHHHcCC
Q psy12642 44 LKAKNKIPEAIKELTEYLKKFMTD---QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHN---HLLHQRYADILYTQGG 117 (201)
Q Consensus 44 ~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~ 117 (201)
....++...+...++..+..+|++ ..+.+.+|.+++..|++++|...|++++...|++ +.+.+.++.++...|
T Consensus 21 ~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~- 99 (145)
T PF09976_consen 21 ALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQG- 99 (145)
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC-
Confidence 336889999999999999999998 5677789999999999999999999999988665 357889999999999
Q ss_pred cccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHH
Q psy12642 118 LENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKK 164 (201)
Q Consensus 118 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 164 (201)
++++|+..++. +...+..+.++..+|.++...|+.++|.....+
T Consensus 100 --~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 100 --QYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred --CHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999976 444556678889999999999999999765443
No 129
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=99.25 E-value=3.9e-10 Score=87.50 Aligned_cols=116 Identities=20% Similarity=0.193 Sum_probs=106.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCc
Q psy12642 39 RKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGL 118 (201)
Q Consensus 39 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 118 (201)
.+..++...++++.|+.++++..+.+|+ +...++.++...++-.+|+..+++++...|.+...+...+..+...+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~-- 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK-- 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC--
Confidence 3445566678999999999999988765 66678999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642 119 ENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSA 160 (201)
Q Consensus 119 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 160 (201)
+++.|+...++++...|++...|+.|+.||..+|++++|..
T Consensus 249 -~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALl 289 (395)
T PF09295_consen 249 -KYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALL 289 (395)
T ss_pred -CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 99999999999999999999999999999999999999954
No 130
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.25 E-value=5.2e-11 Score=69.90 Aligned_cols=64 Identities=28% Similarity=0.355 Sum_probs=31.6
Q ss_pred HcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHH
Q psy12642 46 AKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYA 109 (201)
Q Consensus 46 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la 109 (201)
..|++++|+..+++++..+|++..++..+|.+|...|++++|...+++++..+|+++.++..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 3445555555555555555555555555555555555555555555555555555444444333
No 131
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.23 E-value=4.5e-11 Score=70.18 Aligned_cols=68 Identities=25% Similarity=0.204 Sum_probs=62.3
Q ss_pred hhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q psy12642 10 CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDL 77 (201)
Q Consensus 10 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 77 (201)
++..|++++|+..|++++..+|++..+++.++.++...|++++|...+++++..+|+++.++..++.+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 35789999999999999999999999999999999999999999999999999999998888777653
No 132
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.22 E-value=5.4e-10 Score=81.11 Aligned_cols=104 Identities=16% Similarity=0.158 Sum_probs=94.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC---HHHHHHHHH
Q psy12642 37 RKRKICILKAKNKIPEAIKELTEYLKKFMTD---QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHN---HLLHQRYAD 110 (201)
Q Consensus 37 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~ 110 (201)
.+..+.-++..|+|..|...|...++..|++ +.+++.||++++.+|+|++|...|..+++..|.+ +..++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 6778888899999999999999999999987 7899999999999999999999999999987754 678999999
Q ss_pred HHHHcCCcccHHHHHHHHHHHHcCCcccHHHHH
Q psy12642 111 ILYTQGGLENIELAISHYLMAINLNEKNIRALY 143 (201)
Q Consensus 111 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 143 (201)
+...++ +.++|...|+++++..|+...+..
T Consensus 224 ~~~~l~---~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 224 SLGRLG---NTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHhc---CHHHHHHHHHHHHHHCCCCHHHHH
Confidence 999999 999999999999999999776543
No 133
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.20 E-value=2e-10 Score=68.40 Aligned_cols=65 Identities=20% Similarity=0.226 Sum_probs=36.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHH
Q psy12642 42 CILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQ 106 (201)
Q Consensus 42 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 106 (201)
.++...+++++|++.+++++..+|+++..|...|.++..+|++++|+..|+++++..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 34555555555555555555555555555555555555555555555555555555555554433
No 134
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.18 E-value=2.3e-10 Score=68.15 Aligned_cols=71 Identities=25% Similarity=0.313 Sum_probs=65.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHH
Q psy12642 74 LCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLAL 147 (201)
Q Consensus 74 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 147 (201)
+..+|...+++++|+.++++++..+|+++..+..+|.++...| ++++|+..|+++++..|+++.+....++
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g---~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLG---RYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhc---cHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 3578899999999999999999999999999999999999999 9999999999999999998877655443
No 135
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.17 E-value=1.2e-08 Score=74.90 Aligned_cols=108 Identities=8% Similarity=0.022 Sum_probs=90.5
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCH---HHH
Q psy12642 32 TNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETW---QELCDLYLSEGDYAKAVFCMEELFLHHPHNH---LLH 105 (201)
Q Consensus 32 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~---~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~ 105 (201)
.++..++..|..+...|++++|+..|++++...|..+.+. +.+|.+|++.+++++|+..+++.++.+|+++ .++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 4677788899999999999999999999999999986554 8899999999999999999999999999775 467
Q ss_pred HHHHHHHHHcC---------------CcccHHHHHHHHHHHHcCCcccH
Q psy12642 106 QRYADILYTQG---------------GLENIELAISHYLMAINLNEKNI 139 (201)
Q Consensus 106 ~~la~~~~~~~---------------~~~~~~~A~~~~~~al~~~p~~~ 139 (201)
+.+|.++...+ ++....+|+..|++.++..|+..
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ 158 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ 158 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh
Confidence 88887754332 11235689999999999999853
No 136
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=99.16 E-value=2.2e-09 Score=70.99 Aligned_cols=109 Identities=17% Similarity=0.167 Sum_probs=91.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHH---HHH
Q psy12642 33 NTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD---QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHL---LHQ 106 (201)
Q Consensus 33 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~ 106 (201)
.+..++..|...+..|+|++|++.|+.+....|.. ..+...++.+|+..|++++|+..+++.++++|.++. +++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 45678888999999999999999999999988876 568888999999999999999999999999998754 678
Q ss_pred HHHHHHHHcC------------CcccHHHHHHHHHHHHcCCcccHHH
Q psy12642 107 RYADILYTQG------------GLENIELAISHYLMAINLNEKNIRA 141 (201)
Q Consensus 107 ~la~~~~~~~------------~~~~~~~A~~~~~~al~~~p~~~~~ 141 (201)
..|.+++... ++.....|...|++.++..|++.-+
T Consensus 89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 8888887765 1123889999999999999987543
No 137
>KOG1156|consensus
Probab=99.16 E-value=8.7e-09 Score=82.34 Aligned_cols=150 Identities=15% Similarity=0.046 Sum_probs=128.6
Q ss_pred HhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHH
Q psy12642 8 IGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKA 87 (201)
Q Consensus 8 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A 87 (201)
+.+...|+-++|.......+..++.+..+|..+|.++...++|++|+++|..++.+.|+|..+|.-++.+-..+++++..
T Consensus 49 L~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 49 LTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred chhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCC---cccH-----HHHHHHHHHHHHhhhhhhhh
Q psy12642 88 VFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLN---EKNI-----RALYGLALSCHQVLTSAKCS 159 (201)
Q Consensus 88 ~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~---p~~~-----~~~~~l~~~~~~~~~~~~a~ 159 (201)
...-.+.++..|.....|..++..+...| ++..|....+...+.. |+.. .+...........|...++.
T Consensus 129 ~~tr~~LLql~~~~ra~w~~~Avs~~L~g---~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~al 205 (700)
T KOG1156|consen 129 LETRNQLLQLRPSQRASWIGFAVAQHLLG---EYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKAL 205 (700)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 99999999999999999999999999999 9999988877766554 4322 23334444444555555553
Q ss_pred h
Q psy12642 160 A 160 (201)
Q Consensus 160 ~ 160 (201)
.
T Consensus 206 e 206 (700)
T KOG1156|consen 206 E 206 (700)
T ss_pred H
Confidence 3
No 138
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.16 E-value=2e-09 Score=78.15 Aligned_cols=102 Identities=15% Similarity=0.090 Sum_probs=93.3
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcCcccH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHH
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKIDETNT---AARKRKICILKAKNKIPEAIKELTEYLKKFMTD---QETWQELCDLYL 79 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~ 79 (201)
.+..+++.|+|..|...|...++..|++. .+++++|.+++.+|+++.|...|..+++..|++ ++.++.+|.+..
T Consensus 147 ~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~ 226 (262)
T COG1729 147 AALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLG 226 (262)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH
Confidence 35678899999999999999999998764 899999999999999999999999999988876 789999999999
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCHHHHHH
Q psy12642 80 SEGDYAKAVFCMEELFLHHPHNHLLHQR 107 (201)
Q Consensus 80 ~~~~~~~A~~~~~~al~~~~~~~~~~~~ 107 (201)
.+|+.++|...|+++++..|+...+...
T Consensus 227 ~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 227 RLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 9999999999999999999998766543
No 139
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.16 E-value=2.8e-09 Score=69.23 Aligned_cols=96 Identities=22% Similarity=0.192 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC---CHHHHHHH
Q psy12642 35 AARKRKICILKAKNKIPEAIKELTEYLKKFMTD---QETWQELCDLYLSEGDYAKAVFCMEELFLHHPH---NHLLHQRY 108 (201)
Q Consensus 35 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~l 108 (201)
.+++.++.++-..|+.++|+..|++++...+.. ..++..+|..+...|++++|+..+++++...|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 356777888888888888888888888765444 456777888888888888888888888877777 66677777
Q ss_pred HHHHHHcCCcccHHHHHHHHHHHHc
Q psy12642 109 ADILYTQGGLENIELAISHYLMAIN 133 (201)
Q Consensus 109 a~~~~~~~~~~~~~~A~~~~~~al~ 133 (201)
+.++...| +.++|+..+..++.
T Consensus 82 Al~L~~~g---r~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLG---RPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCC---CHHHHHHHHHHHHH
Confidence 78888888 88888888877664
No 140
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.15 E-value=1.2e-09 Score=82.14 Aligned_cols=134 Identities=18% Similarity=0.109 Sum_probs=111.3
Q ss_pred HHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q psy12642 5 VYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKN--KIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG 82 (201)
Q Consensus 5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 82 (201)
+.+..+...++++.|.+.++.+.+.+.++.-+....+++.+..| ++.+|.-+|++..+..|.++..+..++.+++.+|
T Consensus 136 l~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~ 215 (290)
T PF04733_consen 136 LAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLG 215 (290)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhC
Confidence 44566788999999999999999888888777777777777666 6999999999988888899999999999999999
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccH-HHHHHHHHHHHcCCcccHHH
Q psy12642 83 DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENI-ELAISHYLMAINLNEKNIRA 141 (201)
Q Consensus 83 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~-~~A~~~~~~al~~~p~~~~~ 141 (201)
+|++|...+++++..+|+++.++.+++.+....| +. +.+.+++.+....+|+++..
T Consensus 216 ~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~g---k~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 216 HYEEAEELLEEALEKDPNDPDTLANLIVCSLHLG---KPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp -HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT----TCHHHHHHHHHCHHHTTTSHHH
T ss_pred CHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhC---CChhHHHHHHHHHHHhCCCChHH
Confidence 9999999999999999999999999999999988 55 56667888877788887643
No 141
>KOG1128|consensus
Probab=99.15 E-value=3e-10 Score=91.55 Aligned_cols=118 Identities=15% Similarity=0.061 Sum_probs=59.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCC
Q psy12642 38 KRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGG 117 (201)
Q Consensus 38 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~ 117 (201)
..+|......+++.++.++++..++++|-....|+.+|.+..+.++++.|+++|..++.++|++...|.+++..|...+
T Consensus 489 r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~- 567 (777)
T KOG1128|consen 489 RSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLK- 567 (777)
T ss_pred HhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHh-
Confidence 3334434444555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhh
Q psy12642 118 LENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKC 158 (201)
Q Consensus 118 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a 158 (201)
+..+|...++++++-+-.+...|-|...+....|.++.|
T Consensus 568 --~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda 606 (777)
T KOG1128|consen 568 --KKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDA 606 (777)
T ss_pred --hhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHH
Confidence 455555555555555444444444444444455544444
No 142
>KOG1127|consensus
Probab=99.14 E-value=3.6e-09 Score=88.12 Aligned_cols=147 Identities=15% Similarity=0.064 Sum_probs=132.0
Q ss_pred ccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12642 13 FFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCME 92 (201)
Q Consensus 13 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 92 (201)
.++...|+..|-++++.+|+...++-.+|.+|...-+...|.++|.++.+++|++..++-..+..|....+++.|....-
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999866
Q ss_pred HHhhcCCCC--HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhh
Q psy12642 93 ELFLHHPHN--HLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAK 162 (201)
Q Consensus 93 ~al~~~~~~--~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 162 (201)
.+-+..|-. ...|..+|..+...+ +...|+..|+.+++.+|.+.+.|.+++.+|-..|.++-|.+.-
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~---n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF 619 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAH---NLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVF 619 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCcc---chhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhh
Confidence 655555532 235667999999999 9999999999999999999999999999999999998886643
No 143
>KOG3785|consensus
Probab=99.11 E-value=2.8e-09 Score=79.98 Aligned_cols=152 Identities=16% Similarity=0.046 Sum_probs=116.9
Q ss_pred hhhhccCHHHHHHHHHHHHhcCcccH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHH
Q psy12642 9 GCFHFFRYEEALEHLETIIKIDETNT-AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKA 87 (201)
Q Consensus 9 ~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A 87 (201)
.+....+|+.|+.+++-.+..+.... ....++|.|++++|++++|+..|.-+...+..+.+.+..++.+++..|.|.+|
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHH
Confidence 45667899999999998886654333 66777899999999999999999998887666788999999999999999999
Q ss_pred HHHHHHHhh--------------cCC------------CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHH
Q psy12642 88 VFCMEELFL--------------HHP------------HNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRA 141 (201)
Q Consensus 88 ~~~~~~al~--------------~~~------------~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 141 (201)
...-.++-+ ++. +...-...++.+++... .|++|++.|++++.-+|+....
T Consensus 111 ~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~---HYQeAIdvYkrvL~dn~ey~al 187 (557)
T KOG3785|consen 111 KSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRM---HYQEAIDVYKRVLQDNPEYIAL 187 (557)
T ss_pred HHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHH---HHHHHHHHHHHHHhcChhhhhh
Confidence 876665422 110 00111234555666556 7999999999999999999988
Q ss_pred HHHHHHHHHHhhhhhhhhhhhH
Q psy12642 142 LYGLALSCHQVLTSAKCSAAKK 163 (201)
Q Consensus 142 ~~~l~~~~~~~~~~~~a~~~~~ 163 (201)
-.+++.||.++.-++-+..-.+
T Consensus 188 NVy~ALCyyKlDYydvsqevl~ 209 (557)
T KOG3785|consen 188 NVYMALCYYKLDYYDVSQEVLK 209 (557)
T ss_pred HHHHHHHHHhcchhhhHHHHHH
Confidence 8999999999887776644333
No 144
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.10 E-value=4.7e-08 Score=69.97 Aligned_cols=107 Identities=18% Similarity=0.176 Sum_probs=86.3
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCH---HHHH
Q psy12642 33 NTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD---QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNH---LLHQ 106 (201)
Q Consensus 33 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~ 106 (201)
.+..++..|...+..|++.+|+..|++++...|.+ +.+.+.+|.+++..|++++|+..+++.+...|+++ .+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 46778899999999999999999999999999987 67899999999999999999999999999999875 4788
Q ss_pred HHHHHHHHcC--------CcccHHHHHHHHHHHHcCCcccH
Q psy12642 107 RYADILYTQG--------GLENIELAISHYLMAINLNEKNI 139 (201)
Q Consensus 107 ~la~~~~~~~--------~~~~~~~A~~~~~~al~~~p~~~ 139 (201)
.+|.+++... +.....+|+..|+..++..|+.+
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~ 124 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSE 124 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTST
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCch
Confidence 8888876542 22356799999999999999854
No 145
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.09 E-value=1.1e-07 Score=82.66 Aligned_cols=149 Identities=12% Similarity=0.099 Sum_probs=76.1
Q ss_pred HHhhhhccCHHHHHHHHHHHHhc----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHhc
Q psy12642 7 IIGCFHFFRYEEALEHLETIIKI----DETNTAARKRKICILKAKNKIPEAIKELTEYLKKF-MTDQETWQELCDLYLSE 81 (201)
Q Consensus 7 ~~~~~~~~~~~~A~~~~~~~l~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 81 (201)
+..|.+.|++++|.+.++.+... .|+ ..++..+...|.+.|++++|.+.|+...+.+ +.+...|..+...|.+.
T Consensus 549 I~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~ 627 (1060)
T PLN03218 549 ISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQK 627 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Confidence 34444555555555555555431 222 3344444555555555555555555555443 23444555555555555
Q ss_pred CCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCC-cccHHHHHHHHHHHHHhhhhhhh
Q psy12642 82 GDYAKAVFCMEELFLH--HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLN-EKNIRALYGLALSCHQVLTSAKC 158 (201)
Q Consensus 82 ~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~a 158 (201)
|++++|...|++.... .|+ ...+..+...+...| ++++|.+.+....+.. +.+...+..+..+|.+.|+.++|
T Consensus 628 G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G---~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA 703 (1060)
T PLN03218 628 GDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAG---DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKA 703 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 5555555555555543 222 444555555555555 5556655555555433 12344555566666666666555
Q ss_pred hh
Q psy12642 159 SA 160 (201)
Q Consensus 159 ~~ 160 (201)
..
T Consensus 704 ~~ 705 (1060)
T PLN03218 704 LE 705 (1060)
T ss_pred HH
Confidence 43
No 146
>KOG4234|consensus
Probab=99.09 E-value=3.4e-09 Score=73.50 Aligned_cols=120 Identities=13% Similarity=0.054 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHH
Q psy12642 35 AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ-----ETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYA 109 (201)
Q Consensus 35 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la 109 (201)
.-+..-|.-++..|+|++|...|..++..-|..+ -++...|.+..+++.++.|+....++|.++|.+..++.+.+
T Consensus 96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRA 175 (271)
T KOG4234|consen 96 DSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRA 175 (271)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHH
Confidence 3344567778889999999999999999888763 35667788999999999999999999999999999999999
Q ss_pred HHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhh
Q psy12642 110 DILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAK 157 (201)
Q Consensus 110 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 157 (201)
.+|-.+. .+++|+.-|++.++.+|....+...++.+--....-.+
T Consensus 176 eayek~e---k~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernE 220 (271)
T KOG4234|consen 176 EAYEKME---KYEEALEDYKKILESDPSRREAREAIARLPPKINERNE 220 (271)
T ss_pred HHHHhhh---hHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHH
Confidence 9999988 99999999999999999887777777666555554333
No 147
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.08 E-value=8.4e-08 Score=83.42 Aligned_cols=149 Identities=15% Similarity=0.106 Sum_probs=68.3
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHhcCC
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKIDE-TNTAARKRKICILKAKNKIPEAIKELTEYLKKF-MTDQETWQELCDLYLSEGD 83 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 83 (201)
.+..|.+.|++++|...|+.+.+... -+...|..+...|.+.|++++|+..|....... ..+...|..+...|.+.|+
T Consensus 478 LI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~ 557 (1060)
T PLN03218 478 LISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGA 557 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 33444555555555555555554332 134445555555555555555555555443321 1123444444455555555
Q ss_pred HHHHHHHHHHHhhc----CCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCC-cccHHHHHHHHHHHHHhhhhhhh
Q psy12642 84 YAKAVFCMEELFLH----HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLN-EKNIRALYGLALSCHQVLTSAKC 158 (201)
Q Consensus 84 ~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~a 158 (201)
+++|...|.+.... .|+ ...+..+...+.+.| ++++|.+.|+...+.+ +.++..|..+...|.+.|+.++|
T Consensus 558 ~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G---~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deA 633 (1060)
T PLN03218 558 VDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAG---QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFA 633 (1060)
T ss_pred HHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCC---CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHH
Confidence 55555555544331 222 334444444444444 4445555544444433 22334444444444444444444
No 148
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=99.07 E-value=3.1e-07 Score=63.30 Aligned_cols=145 Identities=21% Similarity=0.137 Sum_probs=121.3
Q ss_pred hhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHhcCCHHHHHH
Q psy12642 11 FHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLK-KFMTDQETWQELCDLYLSEGDYAKAVF 89 (201)
Q Consensus 11 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~p~~~~~~~~l~~~~~~~~~~~~A~~ 89 (201)
.+.=+.+.......+.++.-|+. .-.+.++....+.|++.+|..+|++++. .+.+++.....+++..+..+++..|..
T Consensus 67 ~q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~ 145 (251)
T COG4700 67 QQKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQ 145 (251)
T ss_pred HHhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHH
Confidence 34446666666666666666664 4567899999999999999999999987 677889999999999999999999999
Q ss_pred HHHHHhhcCC--CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642 90 CMEELFLHHP--HNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSA 160 (201)
Q Consensus 90 ~~~~al~~~~--~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 160 (201)
.+++..+.+| ..+.....+|.++...| .+.+|...|+.++...|+ +.+....+.....+|...++..
T Consensus 146 tLe~l~e~~pa~r~pd~~Ll~aR~laa~g---~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 146 TLEDLMEYNPAFRSPDGHLLFARTLAAQG---KYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHhhcCCccCCCCchHHHHHHHHhcC---CchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHH
Confidence 9999999887 45778889999999999 999999999999999998 6666667778888887777643
No 149
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=99.06 E-value=1.1e-07 Score=68.61 Aligned_cols=150 Identities=13% Similarity=0.086 Sum_probs=122.9
Q ss_pred HHhhhhccCHHHHHHHHHHHHhcCcccH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHh
Q psy12642 7 IIGCFHFFRYEEALEHLETIIKIDETNT---AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ---ETWQELCDLYLS 80 (201)
Q Consensus 7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~ 80 (201)
+....+.|++++|+..|+.+...+|.++ .+...++..+.+.++++.|+..+++.++++|+++ .+++..|.+++.
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~ 120 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFF 120 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhc
Confidence 3456778999999999999999987765 6777889999999999999999999999999874 466677777664
Q ss_pred cC--------CHHHHHHHHHHHhhcCCCCHH-----------------HHHHHHHHHHHcCCcccHHHHHHHHHHHHcCC
Q psy12642 81 EG--------DYAKAVFCMEELFLHHPHNHL-----------------LHQRYADILYTQGGLENIELAISHYLMAINLN 135 (201)
Q Consensus 81 ~~--------~~~~A~~~~~~al~~~~~~~~-----------------~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~ 135 (201)
.= -...|+..|+..+...|++.. --..+|..|.+.| .+..|+..++.+++..
T Consensus 121 ~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~---~~~AA~nR~~~v~e~y 197 (254)
T COG4105 121 QIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRG---AYVAAINRFEEVLENY 197 (254)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc---ChHHHHHHHHHHHhcc
Confidence 32 246788899999999998743 1245688888889 9999999999999988
Q ss_pred ccc---HHHHHHHHHHHHHhhhhhhhh
Q psy12642 136 EKN---IRALYGLALSCHQVLTSAKCS 159 (201)
Q Consensus 136 p~~---~~~~~~l~~~~~~~~~~~~a~ 159 (201)
|+. ..++..+..+|..+|-.++|.
T Consensus 198 ~~t~~~~eaL~~l~eaY~~lgl~~~a~ 224 (254)
T COG4105 198 PDTSAVREALARLEEAYYALGLTDEAK 224 (254)
T ss_pred ccccchHHHHHHHHHHHHHhCChHHHH
Confidence 763 468888999999999888883
No 150
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.06 E-value=1.6e-08 Score=85.17 Aligned_cols=150 Identities=11% Similarity=0.035 Sum_probs=100.8
Q ss_pred HHHHhhhhccCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHh
Q psy12642 5 VYIIGCFHFFRYEEALEHLETIIKID--ETNTAARKRKICILKAKNKIPEAIKELTEYLKKFM--TDQETWQELCDLYLS 80 (201)
Q Consensus 5 ~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~ 80 (201)
..|.+|.+.|+.++|++.|+++.+.. |+ ..++..+...+...|..++|..+|+...+..+ .+...|..+...+.+
T Consensus 396 ~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r 474 (697)
T PLN03081 396 ALIAGYGNHGRGTKAVEMFERMIAEGVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474 (697)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh
Confidence 34555666666666666666665532 33 34444555556666666666666666654322 223456666777777
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642 81 EGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSA 160 (201)
Q Consensus 81 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 160 (201)
.|++++|.+.+++. ...| +...|..+...+...| +++.|...+++.+.+.|++...+..++.+|...|+.++|..
T Consensus 475 ~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g---~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~ 549 (697)
T PLN03081 475 EGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHK---NLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAK 549 (697)
T ss_pred cCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcC---CcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHH
Confidence 77777777777653 2233 3556777777777788 88888888888888888888888888888888888888855
No 151
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=99.05 E-value=8.8e-09 Score=68.17 Aligned_cols=98 Identities=16% Similarity=0.142 Sum_probs=87.2
Q ss_pred HHhhhhccCHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHh
Q psy12642 7 IIGCFHFFRYEEALEHLETIIKIDETN---TAARKRKICILKAKNKIPEAIKELTEYLKKFMTD---QETWQELCDLYLS 80 (201)
Q Consensus 7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~ 80 (201)
+...++.|+|++|++.|+.+....|.. ..+...++.+|+..+++++|+..+++.++++|++ +.+++..|.+++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 455788999999999999999988754 4888899999999999999999999999999988 4578889999998
Q ss_pred cCC---------------HHHHHHHHHHHhhcCCCCHHH
Q psy12642 81 EGD---------------YAKAVFCMEELFLHHPHNHLL 104 (201)
Q Consensus 81 ~~~---------------~~~A~~~~~~al~~~~~~~~~ 104 (201)
+.. ...|...|++++...|++..+
T Consensus 97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 876 889999999999999998654
No 152
>KOG2376|consensus
Probab=99.03 E-value=1.7e-07 Score=74.49 Aligned_cols=151 Identities=16% Similarity=0.087 Sum_probs=115.5
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYA 85 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 85 (201)
-+..+...++|++|+....+++...|++..+......+....++|++|+...+.-...... ....+..+.|.++++..+
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~-~~~~fEKAYc~Yrlnk~D 96 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVI-NSFFFEKAYCEYRLNKLD 96 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhc-chhhHHHHHHHHHcccHH
Confidence 3455677899999999999999999999999999999999999999998655543322211 223367888889999999
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc----------------------------
Q psy12642 86 KAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK---------------------------- 137 (201)
Q Consensus 86 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~---------------------------- 137 (201)
+|+.+++ ..++.+..+....|+++++++ +|++|++.|+..++.+.+
T Consensus 97 ealk~~~---~~~~~~~~ll~L~AQvlYrl~---~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v 170 (652)
T KOG2376|consen 97 EALKTLK---GLDRLDDKLLELRAQVLYRLE---RYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEV 170 (652)
T ss_pred HHHHHHh---cccccchHHHHHHHHHHHHHh---hHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCC
Confidence 9998888 456777778888899999999 999999888887543311
Q ss_pred ---cHHHHHHHHHHHHHhhhhhhhhhhhH
Q psy12642 138 ---NIRALYGLALSCHQVLTSAKCSAAKK 163 (201)
Q Consensus 138 ---~~~~~~~l~~~~~~~~~~~~a~~~~~ 163 (201)
....+|+.+.++...|++.+|.....
T Consensus 171 ~e~syel~yN~Ac~~i~~gky~qA~elL~ 199 (652)
T KOG2376|consen 171 PEDSYELLYNTACILIENGKYNQAIELLE 199 (652)
T ss_pred CcchHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 33466778888888888888866443
No 153
>KOG4340|consensus
Probab=99.02 E-value=1.3e-08 Score=74.91 Aligned_cols=151 Identities=15% Similarity=0.063 Sum_probs=128.9
Q ss_pred HHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHH
Q psy12642 7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAK 86 (201)
Q Consensus 7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 86 (201)
+..+.+..+|..|++++....+..|.+...+..+|.||....++..|..+|++.-...|......+..++.+++.+.+..
T Consensus 17 iy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~AD 96 (459)
T KOG4340|consen 17 VYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYAD 96 (459)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHH
Confidence 34467788999999999999999999999999999999999999999999999999999988888888888888888888
Q ss_pred HHHHHHHHhh----------------c--------------CC--CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcC
Q psy12642 87 AVFCMEELFL----------------H--------------HP--HNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134 (201)
Q Consensus 87 A~~~~~~al~----------------~--------------~~--~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~ 134 (201)
|+.+...... - -| ++.....+.|.+.++.| +++.|++-|+.+++.
T Consensus 97 ALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykeg---qyEaAvqkFqaAlqv 173 (459)
T KOG4340|consen 97 ALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEG---QYEAAVQKFQAALQV 173 (459)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccc---cHHHHHHHHHHHHhh
Confidence 8776553322 1 12 33456677788888888 999999999999999
Q ss_pred CcccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642 135 NEKNIRALYGLALSCHQVLTSAKCSA 160 (201)
Q Consensus 135 ~p~~~~~~~~l~~~~~~~~~~~~a~~ 160 (201)
..-++..-++++.|..+.+++..|..
T Consensus 174 sGyqpllAYniALaHy~~~qyasALk 199 (459)
T KOG4340|consen 174 SGYQPLLAYNLALAHYSSRQYASALK 199 (459)
T ss_pred cCCCchhHHHHHHHHHhhhhHHHHHH
Confidence 99999999999999999999888854
No 154
>PLN03077 Protein ECB2; Provisional
Probab=99.01 E-value=3.6e-08 Score=84.97 Aligned_cols=150 Identities=9% Similarity=0.115 Sum_probs=112.7
Q ss_pred HHHHhhhhccCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHh
Q psy12642 5 VYIIGCFHFFRYEEALEHLETIIKID--ETNTAARKRKICILKAKNKIPEAIKELTEYLKKFM--TDQETWQELCDLYLS 80 (201)
Q Consensus 5 ~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~ 80 (201)
..+.+|...|+.++|++.|+++.+.. |+. .++..+...+.+.|.+++|..+|+...+..+ .+...|..+..++.+
T Consensus 559 ~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r 637 (857)
T PLN03077 559 ILLTGYVAHGKGSMAVELFNRMVESGVNPDE-VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGR 637 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Confidence 45667778888888888888877643 544 3444555667778888888888888774332 245677778888888
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642 81 EGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSA 160 (201)
Q Consensus 81 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 160 (201)
.|++++|...+++. ...|+ +..|..+-..+...+ +.+.+....++.++++|+++..+..++.+|...|+++++..
T Consensus 638 ~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~---~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~ 712 (857)
T PLN03077 638 AGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHR---HVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVAR 712 (857)
T ss_pred CCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcC---ChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHH
Confidence 88888888888875 24454 556666666667777 88888888888899999999889999999999999888855
No 155
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.01 E-value=2.6e-08 Score=74.94 Aligned_cols=179 Identities=17% Similarity=0.091 Sum_probs=123.8
Q ss_pred HHhhhhccCHHHHHHHHHHHHhcC-----cc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC--CC----HHHHHHH
Q psy12642 7 IIGCFHFFRYEEALEHLETIIKID-----ET-NTAARKRKICILKAKNKIPEAIKELTEYLKKFM--TD----QETWQEL 74 (201)
Q Consensus 7 ~~~~~~~~~~~~A~~~~~~~l~~~-----~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p--~~----~~~~~~l 74 (201)
+..|...+++++|.+.|.++.... +. -...+...+.++... ++++|+..+++++...- ++ ..++..+
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~l 120 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKEL 120 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 445667889999999999887643 22 224555666666555 99999999999998632 22 4577889
Q ss_pred HHHHHhc-CCHHHHHHHHHHHhhcCC--CC----HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc------cH-H
Q psy12642 75 CDLYLSE-GDYAKAVFCMEELFLHHP--HN----HLLHQRYADILYTQGGLENIELAISHYLMAINLNEK------NI-R 140 (201)
Q Consensus 75 ~~~~~~~-~~~~~A~~~~~~al~~~~--~~----~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~-~ 140 (201)
|.+|... |++++|+++|++++.... +. ...+..+|.++...+ +|++|++.|+++....-+ .. .
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~---~y~~A~~~~e~~~~~~l~~~l~~~~~~~ 197 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLG---RYEEAIEIYEEVAKKCLENNLLKYSAKE 197 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHTCCCHCTTGHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHhhcccccchhHHH
Confidence 9999998 999999999999998632 22 236778999999999 999999999999875421 12 3
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhHHHHH-------HHhHHHHHHHHHHHHhhhcchH
Q psy12642 141 ALYGLALSCHQVLTSAKCSAAKKKEIS-------KQMMWVSKHLARQYEEQQGNTE 189 (201)
Q Consensus 141 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~l~~~y~~~~~~~~ 189 (201)
.+...+.|+...|+...|......... .-+......|.+.|...+....
T Consensus 198 ~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f 253 (282)
T PF14938_consen 198 YFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAF 253 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHH
Confidence 456788899999998888665554432 1223345567777877666554
No 156
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.01 E-value=4.6e-08 Score=79.11 Aligned_cols=133 Identities=13% Similarity=-0.077 Sum_probs=106.2
Q ss_pred cCcccHHHHH--HHHHHHHHcCC---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHh
Q psy12642 29 IDETNTAARK--RKICILKAKNK---IPEAIKELTEYLKKFMTDQETWQELCDLYLSEG--------DYAKAVFCMEELF 95 (201)
Q Consensus 29 ~~~~~~~~~~--~~a~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~al 95 (201)
..|.++.+|- ..|.-+...++ ...|+.+|+++++.+|++..++..++.++.... +...+....++++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3456655544 45555555544 789999999999999999999998888775432 3456666677766
Q ss_pred hc--CCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHH
Q psy12642 96 LH--HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKE 165 (201)
Q Consensus 96 ~~--~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 165 (201)
.. +|.++.++..+|..+...| ++++|...+++++.++|+ ..+|..+|.++...|+.++|.....+.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g---~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKG---KTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 64 7778889999999999999 999999999999999995 789999999999999999997765544
No 157
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.00 E-value=3.5e-08 Score=64.16 Aligned_cols=93 Identities=17% Similarity=0.071 Sum_probs=82.4
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---CHHHHHHHHHH
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETN---TAARKRKICILKAKNKIPEAIKELTEYLKKFMT---DQETWQELCDL 77 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~ 77 (201)
+-.+..+...|+.++|+.+|++++...... ..+++.+|.++...|++++|+..+++.+..+|+ +..+...++.+
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHH
Confidence 445677888999999999999999976443 578899999999999999999999999999998 77788888999
Q ss_pred HHhcCCHHHHHHHHHHHhh
Q psy12642 78 YLSEGDYAKAVFCMEELFL 96 (201)
Q Consensus 78 ~~~~~~~~~A~~~~~~al~ 96 (201)
+...|++++|+..+-.++.
T Consensus 85 L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999988774
No 158
>KOG4234|consensus
Probab=98.99 E-value=1.6e-08 Score=70.17 Aligned_cols=97 Identities=14% Similarity=0.155 Sum_probs=52.5
Q ss_pred hhhccCHHHHHHHHHHHHhcCcccH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Q psy12642 10 CFHFFRYEEALEHLETIIKIDETNT-----AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDY 84 (201)
Q Consensus 10 ~~~~~~~~~A~~~~~~~l~~~~~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 84 (201)
+|..|+|++|..-|..+++..|..+ .++...|.+++.++.++.|+....+++.++|....+....+.+|-++..|
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 4555555555555555555554432 23334455555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHhhcCCCCHHHHH
Q psy12642 85 AKAVFCMEELFLHHPHNHLLHQ 106 (201)
Q Consensus 85 ~~A~~~~~~al~~~~~~~~~~~ 106 (201)
++|+..|.+.+..+|....+..
T Consensus 185 eealeDyKki~E~dPs~~ear~ 206 (271)
T KOG4234|consen 185 EEALEDYKKILESDPSRREARE 206 (271)
T ss_pred HHHHHHHHHHHHhCcchHHHHH
Confidence 5555555555555555444333
No 159
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.99 E-value=3.6e-08 Score=83.12 Aligned_cols=147 Identities=14% Similarity=0.036 Sum_probs=78.6
Q ss_pred HHHHhhhhccCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHhcC
Q psy12642 5 VYIIGCFHFFRYEEALEHLETIIKID-ETNTAARKRKICILKAKNKIPEAIKELTEYLKKF-MTDQETWQELCDLYLSEG 82 (201)
Q Consensus 5 ~~~~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 82 (201)
..+.+|.+.|++++|+..|++..+.. .-+..++..+...+...|++++|...+...++.. +.+..++..+...|.+.|
T Consensus 295 ~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G 374 (697)
T PLN03081 295 SMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWG 374 (697)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCC
Confidence 35566667777777777777765533 1234455555666666666666666666655543 334445555555555555
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcC--CcccHHHHHHHHHHHHHhhhhhhh
Q psy12642 83 DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL--NEKNIRALYGLALSCHQVLTSAKC 158 (201)
Q Consensus 83 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~a 158 (201)
++++|...|++... .|...|..+...|...| +.++|++.|++..+. .|+ ..++..+..++.+.|..++|
T Consensus 375 ~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G---~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~~~~a 445 (697)
T PLN03081 375 RMEDARNVFDRMPR---KNLISWNALIAGYGNHG---RGTKAVEMFERMIAEGVAPN-HVTFLAVLSACRYSGLSEQG 445 (697)
T ss_pred CHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCcHHHH
Confidence 55555555555432 23444555555555555 555555555554432 222 33344444444444444444
No 160
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.99 E-value=8.5e-08 Score=77.28 Aligned_cols=123 Identities=13% Similarity=-0.006 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q psy12642 35 AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYT 114 (201)
Q Consensus 35 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 114 (201)
++++.++..|...|++++|+.+++++|...|+.++.+...|.++-..|++.+|..+++.+..+++.|-......+..+.+
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHHHHHHHHHHcCC--cc-c----HHHH--HHHHHHHHHhhhhhhhhh
Q psy12642 115 QGGLENIELAISHYLMAINLN--EK-N----IRAL--YGLALSCHQVLTSAKCSA 160 (201)
Q Consensus 115 ~~~~~~~~~A~~~~~~al~~~--p~-~----~~~~--~~l~~~~~~~~~~~~a~~ 160 (201)
.| +.++|.+.+....+.+ |. + .-.| ...|.+|.+.|++..|..
T Consensus 275 a~---~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk 326 (517)
T PF12569_consen 275 AG---RIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALK 326 (517)
T ss_pred CC---CHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 99 9999999988766554 21 1 1133 457889999999988855
No 161
>KOG4648|consensus
Probab=98.98 E-value=3.6e-09 Score=79.06 Aligned_cols=103 Identities=17% Similarity=0.043 Sum_probs=90.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcC
Q psy12642 37 RKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQG 116 (201)
Q Consensus 37 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 116 (201)
....|..|+.+|+|++|+.+|.+.+..+|.++..+...+.+|++++.|..|...++.++.++.....++.+.+.+...+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 34568888999999999999999999999998888889999999999999999999999998888888999999988999
Q ss_pred CcccHHHHHHHHHHHHcCCcccHHHH
Q psy12642 117 GLENIELAISHYLMAINLNEKNIRAL 142 (201)
Q Consensus 117 ~~~~~~~A~~~~~~al~~~p~~~~~~ 142 (201)
...+|.+-++.++++.|++.+.-
T Consensus 180 ---~~~EAKkD~E~vL~LEP~~~ELk 202 (536)
T KOG4648|consen 180 ---NNMEAKKDCETVLALEPKNIELK 202 (536)
T ss_pred ---hHHHHHHhHHHHHhhCcccHHHH
Confidence 89999999999999999865543
No 162
>KOG4648|consensus
Probab=98.97 E-value=3.8e-09 Score=78.97 Aligned_cols=105 Identities=17% Similarity=0.112 Sum_probs=97.0
Q ss_pred HHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHH
Q psy12642 7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAK 86 (201)
Q Consensus 7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 86 (201)
+..||++|.|++|+.+|.+.+..+|.++..+..++..|++.+.+..|...++.++.++.....+|...|.+...+|...+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 45689999999999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHH
Q psy12642 87 AVFCMEELFLHHPHNHLLHQRYADI 111 (201)
Q Consensus 87 A~~~~~~al~~~~~~~~~~~~la~~ 111 (201)
|.+.++.++.+.|++..+.-.++.+
T Consensus 184 AKkD~E~vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 184 AKKDCETVLALEPKNIELKKSLARI 208 (536)
T ss_pred HHHhHHHHHhhCcccHHHHHHHHHh
Confidence 9999999999999987765555443
No 163
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.96 E-value=6.6e-08 Score=73.38 Aligned_cols=120 Identities=16% Similarity=0.083 Sum_probs=63.8
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q psy12642 32 TNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADI 111 (201)
Q Consensus 32 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 111 (201)
+++.....++.-+...|+.++|.++..++++..-+ +.....++ ...-+++.+=++..++.++..|+++..+..+|..
T Consensus 261 ~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D-~~L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L 337 (400)
T COG3071 261 NDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWD-PRLCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRL 337 (400)
T ss_pred cChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC-hhHHHHHh--hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence 44455555555555556666666555555554322 22222222 1244555555555555555556555555556665
Q ss_pred HHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhh
Q psy12642 112 LYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKC 158 (201)
Q Consensus 112 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a 158 (201)
+++.+ .+.+|..+|+.+++..|+ ...+..++.++-+.|+..+|
T Consensus 338 ~~k~~---~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 338 ALKNK---LWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEA 380 (400)
T ss_pred HHHhh---HHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHH
Confidence 55555 566666666655555554 33445555555555555555
No 164
>PRK11906 transcriptional regulator; Provisional
Probab=98.96 E-value=3.5e-08 Score=76.92 Aligned_cols=118 Identities=10% Similarity=0.043 Sum_probs=101.4
Q ss_pred ccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12642 13 FFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCME 92 (201)
Q Consensus 13 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 92 (201)
..+..+|.+.-+++++.+|.++.++..+|.+....++++.|+..|++++.++|+.+.+|+..|.+....|+.++|+..++
T Consensus 317 ~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 317 ELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCHHHH-HHHHHHHHHcCCcccHHHHHHHHHHHHc
Q psy12642 93 ELFLHHPHNHLLH-QRYADILYTQGGLENIELAISHYLMAIN 133 (201)
Q Consensus 93 ~al~~~~~~~~~~-~~la~~~~~~~~~~~~~~A~~~~~~al~ 133 (201)
+++.++|.-..+- ..+-.-.+... ..++|++.|-+--+
T Consensus 397 ~alrLsP~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 435 (458)
T PRK11906 397 KSLQLEPRRRKAVVIKECVDMYVPN---PLKNNIKLYYKETE 435 (458)
T ss_pred HHhccCchhhHHHHHHHHHHHHcCC---chhhhHHHHhhccc
Confidence 9999999765433 33333134444 58999998876543
No 165
>KOG3785|consensus
Probab=98.94 E-value=7.7e-08 Score=72.43 Aligned_cols=150 Identities=15% Similarity=0.074 Sum_probs=119.5
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------hcC------
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLK--------------KFM------ 65 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--------------~~p------ 65 (201)
.+.+++..|+|++|+..|.-+...+..+...+..++.+++-+|.+.+|.....++-+ .+.
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~ 142 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILT 142 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHH
Confidence 356789999999999999999988877788999999999999999999877665321 110
Q ss_pred ------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccH
Q psy12642 66 ------TDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNI 139 (201)
Q Consensus 66 ------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 139 (201)
+..+-...++.+++..-.|++|+.+|.+.+..+|+.......++.|++++. -++-+.+.+.-.++.-|+.+
T Consensus 143 fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlD---Yydvsqevl~vYL~q~pdSt 219 (557)
T KOG3785|consen 143 FHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLD---YYDVSQEVLKVYLRQFPDST 219 (557)
T ss_pred HHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcc---hhhhHHHHHHHHHHhCCCcH
Confidence 111223346667777778999999999999999999999999999999999 99999999999999999988
Q ss_pred HHHHHHHHHHHHhhhhhhh
Q psy12642 140 RALYGLALSCHQVLTSAKC 158 (201)
Q Consensus 140 ~~~~~l~~~~~~~~~~~~a 158 (201)
-+....+-...++-+-.-+
T Consensus 220 iA~NLkacn~fRl~ngr~a 238 (557)
T KOG3785|consen 220 IAKNLKACNLFRLINGRTA 238 (557)
T ss_pred HHHHHHHHHHhhhhccchh
Confidence 8876666555554433333
No 166
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.93 E-value=4.8e-07 Score=68.81 Aligned_cols=178 Identities=13% Similarity=0.038 Sum_probs=108.2
Q ss_pred HHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------------
Q psy12642 7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKK----------------------- 63 (201)
Q Consensus 7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------------------- 63 (201)
..-+...|++..|....+++++..|.++.+......+|...|++.....++.+..+.
T Consensus 160 arlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~ 239 (400)
T COG3071 160 ARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQA 239 (400)
T ss_pred HHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHH
Confidence 334555666666666666666666666666666666666666666555555442211
Q ss_pred -cC------------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHH
Q psy12642 64 -FM------------------TDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELA 124 (201)
Q Consensus 64 -~p------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A 124 (201)
++ +++.+...++.-+...|++++|.+..+++++..-+ +.....++. ..-+ +...=
T Consensus 240 ~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D-~~L~~~~~~--l~~~---d~~~l 313 (400)
T COG3071 240 RDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWD-PRLCRLIPR--LRPG---DPEPL 313 (400)
T ss_pred hccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC-hhHHHHHhh--cCCC---CchHH
Confidence 00 11223333444455666666666666666655433 223333332 2334 67778
Q ss_pred HHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHH-HHhHHHHHHHHHHHHhhhcchHH
Q psy12642 125 ISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEIS-KQMMWVSKHLARQYEEQQGNTET 190 (201)
Q Consensus 125 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l~~~y~~~~~~~~~ 190 (201)
++..++.++..|+++..+..||..|.+.+.+.+|....+.... .........+.+.|.+......+
T Consensus 314 ~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 314 IKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEA 380 (400)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHH
Confidence 8999999999999999999999999999999999776664432 12222333456666665555553
No 167
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.93 E-value=8.8e-09 Score=80.06 Aligned_cols=68 Identities=13% Similarity=0.091 Sum_probs=43.9
Q ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHhhc
Q psy12642 30 DETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQET---WQELCDLYLSEGDYAKAVFCMEELFLH 97 (201)
Q Consensus 30 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~~~~~~A~~~~~~al~~ 97 (201)
+|+++..+..+|.++...|++++|+..|++++.++|++..+ |+++|.+|..+|++++|+.++++++..
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45666666666666666666666666666666666666533 666666666666666666666666665
No 168
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.90 E-value=1.5e-07 Score=70.74 Aligned_cols=136 Identities=17% Similarity=0.099 Sum_probs=114.5
Q ss_pred chHHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy12642 2 APIVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKA-KNKIPEAIKELTEYLKKFMTDQETWQELCDLYLS 80 (201)
Q Consensus 2 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 80 (201)
++|.|+....+.+..+.|...|.++++..+....+|...|.+-+. .++.+.|..+|+.+++..|.+..+|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 577788888888889999999999997777778899999999777 5666669999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhhcCCCCH---HHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHH
Q psy12642 81 EGDYAKAVFCMEELFLHHPHNH---LLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIR 140 (201)
Q Consensus 81 ~~~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 140 (201)
.|+.+.|...|++++..-|... .+|......-...| +.+...+..+++.+..|++..
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~G---dl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYG---DLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS----HHHHHHHHHHHHHHTTTS-H
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhhhhhH
Confidence 9999999999999998876654 58888888888899 999999999999998887443
No 169
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.90 E-value=1.5e-08 Score=78.87 Aligned_cols=69 Identities=14% Similarity=-0.041 Sum_probs=57.7
Q ss_pred hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHH---HHHHHHHHHHcCCcccHHHHHHHHHHHHcC
Q psy12642 63 KFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLL---HQRYADILYTQGGLENIELAISHYLMAINL 134 (201)
Q Consensus 63 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~la~~~~~~~~~~~~~~A~~~~~~al~~ 134 (201)
.+|+++..|+.+|.+|+..|+|++|+..|++++.++|++..+ ++++|.+|..+| ++++|+.++++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LG---r~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYRE---EGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHh
Confidence 568888888888888888888888888888888888888744 888888888888 888888888888886
No 170
>KOG2376|consensus
Probab=98.89 E-value=1.9e-07 Score=74.24 Aligned_cols=148 Identities=19% Similarity=0.102 Sum_probs=106.7
Q ss_pred HhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHH
Q psy12642 8 IGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKA 87 (201)
Q Consensus 8 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A 87 (201)
+++.+.+.|++|+...++-...... ....+..+.|.+++|..++|+..++ -.++.+..+....|++++++|+|++|
T Consensus 54 ValIq~~ky~~ALk~ikk~~~~~~~-~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydea 129 (652)
T KOG2376|consen 54 VALIQLDKYEDALKLIKKNGALLVI-NSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEA 129 (652)
T ss_pred hhhhhhhHHHHHHHHHHhcchhhhc-chhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHH
Confidence 5677888888888554443322212 2223678888999999999988888 35566666777888899999999999
Q ss_pred HHHHHHHhhcCCC-------------------------------CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCc
Q psy12642 88 VFCMEELFLHHPH-------------------------------NHLLHQRYADILYTQGGLENIELAISHYLMAINLNE 136 (201)
Q Consensus 88 ~~~~~~al~~~~~-------------------------------~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p 136 (201)
+..|+..++.+.+ +...+++.+.++...| +|.+|++.+++++++.-
T Consensus 130 ldiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~g---ky~qA~elL~kA~~~~~ 206 (652)
T KOG2376|consen 130 LDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENG---KYNQAIELLEKALRICR 206 (652)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHH
Confidence 9988887544322 3446788888889999 99999999999943321
Q ss_pred -------cc--------HHHHHHHHHHHHHhhhhhhhhhhh
Q psy12642 137 -------KN--------IRALYGLALSCHQVLTSAKCSAAK 162 (201)
Q Consensus 137 -------~~--------~~~~~~l~~~~~~~~~~~~a~~~~ 162 (201)
.+ ......++-++..+|+..+|...+
T Consensus 207 e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 207 EKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred HhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 11 135678888999999999996633
No 171
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.89 E-value=1e-08 Score=72.09 Aligned_cols=104 Identities=13% Similarity=0.088 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q psy12642 34 TAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILY 113 (201)
Q Consensus 34 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 113 (201)
...++.+|..|-..|-+.-|.-.|.+++.+.|+-+.++..+|..+...|+|+.|.+.|+..++++|.+..+..+.|..++
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y 144 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 144 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence 46677788888888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCcccHHHHHHHHHHHHcCCcccHH
Q psy12642 114 TQGGLENIELAISHYLMAINLNEKNIR 140 (201)
Q Consensus 114 ~~~~~~~~~~A~~~~~~al~~~p~~~~ 140 (201)
.-| ++.-|.+-+.+-.+.+|++|-
T Consensus 145 Y~g---R~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 145 YGG---RYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred ecC---chHhhHHHHHHHHhcCCCChH
Confidence 999 999999999999999998874
No 172
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.88 E-value=4.2e-08 Score=67.13 Aligned_cols=99 Identities=16% Similarity=0.075 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCC--
Q psy12642 50 IPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD----------YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGG-- 117 (201)
Q Consensus 50 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~-- 117 (201)
++.|.+.++.....+|.|++.+...|.++..+.+ +++|+.-|++++.++|+...++.++|.++...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 3455555555566666666655555555444322 3556666677777777777777777777766541
Q ss_pred ------cccHHHHHHHHHHHHcCCcccHHHHHHHHHH
Q psy12642 118 ------LENIELAISHYLMAINLNEKNIRALYGLALS 148 (201)
Q Consensus 118 ------~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 148 (201)
...+++|..+|+++...+|++......|.++
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 0147888888888888888876655555444
No 173
>KOG3081|consensus
Probab=98.86 E-value=5e-07 Score=65.46 Aligned_cols=142 Identities=23% Similarity=0.178 Sum_probs=118.9
Q ss_pred HHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----cC
Q psy12642 7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLS----EG 82 (201)
Q Consensus 7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~ 82 (201)
++-+...|++++|+...+.. .+..+...-..++.++.+.+-|...+++..+.+.+ .....|+..|.. .+
T Consensus 115 a~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~awv~la~gge 187 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAWVKLATGGE 187 (299)
T ss_pred hHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--HHHHHHHHHHHHHhccch
Confidence 44567789999999887762 44556666677888899999999999988876543 445556666553 45
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhh
Q psy12642 83 DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKC 158 (201)
Q Consensus 83 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a 158 (201)
.+.+|..+|++.-...|..+......+.++..++ ++++|...++.++..+++++..+.++..+....|...++
T Consensus 188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~---~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLG---RYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEV 260 (299)
T ss_pred hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhc---CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHH
Confidence 6899999999999988889999999999999999 999999999999999999999999999999999987666
No 174
>KOG2796|consensus
Probab=98.84 E-value=2.8e-07 Score=66.83 Aligned_cols=141 Identities=16% Similarity=0.125 Sum_probs=113.7
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------cCCCHHHHHHHHHHH
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKID-ETNTAARKRKICILKAKNKIPEAIKELTEYLKK------FMTDQETWQELCDLY 78 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~ 78 (201)
++-.+.-.|.|.-.+..++++++.+ |.++.....+|.+.++.|+.+.|..+++..-+. ......+....+.+|
T Consensus 183 ~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~ 262 (366)
T KOG2796|consen 183 MANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLH 262 (366)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhe
Confidence 4455667788999999999999988 678888888999999999999999988854332 123345666778888
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCccc---HHHHHHHHHHH
Q psy12642 79 LSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN---IRALYGLALSC 149 (201)
Q Consensus 79 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~ 149 (201)
..++++..|...+.+.+..+|.++.+..+.|.|+...| +..+|++..+.+++..|.. ....++|..+|
T Consensus 263 lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg---~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 263 LGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLG---KLKDALKQLEAMVQQDPRHYLHESVLFNLTTMY 333 (366)
T ss_pred ecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHH---HHHHHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999 9999999999999999863 23444554444
No 175
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.84 E-value=7e-08 Score=66.04 Aligned_cols=97 Identities=19% Similarity=0.141 Sum_probs=76.1
Q ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC-
Q psy12642 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNK----------IPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD- 83 (201)
Q Consensus 15 ~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~- 83 (201)
-|+.|.+.++.....+|.++..+..=|.++..+.+ +++|+.-|++++.++|+..+++..+|.+|...+.
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 37889999999999999999988888887776643 4667888889999999999999999999887653
Q ss_pred ----------HHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q psy12642 84 ----------YAKAVFCMEELFLHHPHNHLLHQRYADI 111 (201)
Q Consensus 84 ----------~~~A~~~~~~al~~~~~~~~~~~~la~~ 111 (201)
|++|..+|+++...+|+|..+...+..+
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 7889999999999999998777666554
No 176
>KOG4555|consensus
Probab=98.84 E-value=2.9e-07 Score=59.72 Aligned_cols=109 Identities=13% Similarity=0.034 Sum_probs=69.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCH----HHHHHHHHHHHH
Q psy12642 39 RKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNH----LLHQRYADILYT 114 (201)
Q Consensus 39 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~ 114 (201)
..|......|+.+.|++.|.+++..-|..+.+|.+.++.+.-+|+.++|+..+++++.+..+.. .++...|.+|..
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 4455666667777777777777777777777777777777777777777777777776644322 245666667666
Q ss_pred cCCcccHHHHHHHHHH------------HHcCCcccHHHHHHHHHHHH
Q psy12642 115 QGGLENIELAISHYLM------------AINLNEKNIRALYGLALSCH 150 (201)
Q Consensus 115 ~~~~~~~~~A~~~~~~------------al~~~p~~~~~~~~l~~~~~ 150 (201)
.| +-+.|..-|+. .+.++|.-.-.-..|+.++.
T Consensus 128 ~g---~dd~AR~DFe~AA~LGS~FAr~QLV~lNPYAAlCN~MLa~~f~ 172 (175)
T KOG4555|consen 128 LG---NDDAARADFEAAAQLGSKFAREQLVELNPYAALCNQMLADAFD 172 (175)
T ss_pred hC---chHHHHHhHHHHHHhCCHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 66 66666655543 35666665555555555544
No 177
>PLN03077 Protein ECB2; Provisional
Probab=98.83 E-value=1e-06 Score=76.14 Aligned_cols=173 Identities=12% Similarity=-0.014 Sum_probs=121.0
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHhcCC
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKK--FMTDQETWQELCDLYLSEGD 83 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~ 83 (201)
.+..|.+.|+.++|...|+.. +.+...|..+...|...|+.++|+..|++..+. .|+. ..+..+-..+.+.|.
T Consensus 530 Li~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~ 604 (857)
T PLN03077 530 LLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE-VTFISLLCACSRSGM 604 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHhhcCh
Confidence 456677888899998888875 456778888888899999999999999987763 3543 445555567888899
Q ss_pred HHHHHHHHHHHhhcCC--CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhh
Q psy12642 84 YAKAVFCMEELFLHHP--HNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAA 161 (201)
Q Consensus 84 ~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 161 (201)
+++|..+|+......+ .+...+..+...+.+.| ++++|.+.+++. ...|+ ...|..|...+..-++.+.+...
T Consensus 605 v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G---~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~ 679 (857)
T PLN03077 605 VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAG---KLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELA 679 (857)
T ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCC---CHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHH
Confidence 9999999988874332 23567888888889999 999999988874 45565 66777777777777776665332
Q ss_pred hHHHHHHHhH---HHHHHHHHHHHhhhcchH
Q psy12642 162 KKKEISKQMM---WVSKHLARQYEEQQGNTE 189 (201)
Q Consensus 162 ~~~~~~~~~~---~~~~~l~~~y~~~~~~~~ 189 (201)
.++. .++.+ .....+...|.....+++
T Consensus 680 a~~l-~~l~p~~~~~y~ll~n~ya~~g~~~~ 709 (857)
T PLN03077 680 AQHI-FELDPNSVGYYILLCNLYADAGKWDE 709 (857)
T ss_pred HHHH-HhhCCCCcchHHHHHHHHHHCCChHH
Confidence 2111 12222 122335566766666555
No 178
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.83 E-value=5.8e-06 Score=58.87 Aligned_cols=158 Identities=22% Similarity=0.155 Sum_probs=123.8
Q ss_pred HHHhhhhccCHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH-HHHhcC
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIK--IDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCD-LYLSEG 82 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~-~~~~~~ 82 (201)
....+...+++..+...+...+. ..+.....+...+......+++..++..+..++...+.+.......+. ++...|
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (291)
T COG0457 65 LALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELG 144 (291)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcC
Confidence 44556677888888888888887 677788888888888888888999999999888877776555555556 788899
Q ss_pred CHHHHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHhhhhhhh
Q psy12642 83 DYAKAVFCMEELFLHHP---HNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK-NIRALYGLALSCHQVLTSAKC 158 (201)
Q Consensus 83 ~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~a 158 (201)
+++.|...+.+++...| .........+..+...+ +++.++..+.+++...|. ....+..++.++...+....+
T Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 221 (291)
T COG0457 145 DYEEALELYEKALELDPELNELAEALLALGALLEALG---RYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEA 221 (291)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhc---CHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHH
Confidence 99999999998887666 34555666666667777 889999999999998888 688888888888888877777
Q ss_pred hhhhHHHH
Q psy12642 159 SAAKKKEI 166 (201)
Q Consensus 159 ~~~~~~~~ 166 (201)
........
T Consensus 222 ~~~~~~~~ 229 (291)
T COG0457 222 LEYYEKAL 229 (291)
T ss_pred HHHHHHHH
Confidence 55444443
No 179
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.82 E-value=1.4e-08 Score=61.22 Aligned_cols=64 Identities=17% Similarity=0.215 Sum_probs=30.6
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---cCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q psy12642 33 NTAARKRKICILKAKNKIPEAIKELTEYLKK---FMT----DQETWQELCDLYLSEGDYAKAVFCMEELFL 96 (201)
Q Consensus 33 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 96 (201)
-..++..+|.+|..+|++++|+..++++++. .++ ...++..+|.++..+|++++|+.++++++.
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444555555555555555555555555542 111 123444455555555555555555555543
No 180
>KOG1915|consensus
Probab=98.81 E-value=2e-06 Score=67.17 Aligned_cols=158 Identities=11% Similarity=0.047 Sum_probs=128.2
Q ss_pred chHHHHHhhhhccCHHHHHHHHHHHHhcCcccH--HHHHHHHH-----H---HHHcCCHHHHHHHHHHHHHhcCCC----
Q psy12642 2 APIVYIIGCFHFFRYEEALEHLETIIKIDETNT--AARKRKIC-----I---LKAKNKIPEAIKELTEYLKKFMTD---- 67 (201)
Q Consensus 2 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~--~~~~~~a~-----~---~~~~~~~~~A~~~~~~~~~~~p~~---- 67 (201)
+++-|+.-....|+.++..+.|++++...|-.. ..|.+... + -+...+.+.+...|+.++++-|..
T Consensus 324 sWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtF 403 (677)
T KOG1915|consen 324 SWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTF 403 (677)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchH
Confidence 345566556667999999999999999877533 22222221 1 124688999999999999999875
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHH
Q psy12642 68 QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLAL 147 (201)
Q Consensus 68 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 147 (201)
+.+|...+....++.+...|.+.+-.+|...|.+. ..-.+..+-...+ +++.+...|++-++-+|.+-.+|...+.
T Consensus 404 aKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K-lFk~YIelElqL~---efDRcRkLYEkfle~~Pe~c~~W~kyaE 479 (677)
T KOG1915|consen 404 AKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK-LFKGYIELELQLR---EFDRCRKLYEKFLEFSPENCYAWSKYAE 479 (677)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh-HHHHHHHHHHHHh---hHHHHHHHHHHHHhcChHhhHHHHHHHH
Confidence 67888899999999999999999999999999854 4555566677888 9999999999999999999999999999
Q ss_pred HHHHhhhhhhhhhhhH
Q psy12642 148 SCHQVLTSAKCSAAKK 163 (201)
Q Consensus 148 ~~~~~~~~~~a~~~~~ 163 (201)
.-..+|+.++++.-..
T Consensus 480 lE~~LgdtdRaRaife 495 (677)
T KOG1915|consen 480 LETSLGDTDRARAIFE 495 (677)
T ss_pred HHHHhhhHHHHHHHHH
Confidence 9999999999977443
No 181
>KOG4555|consensus
Probab=98.80 E-value=3.7e-07 Score=59.22 Aligned_cols=103 Identities=16% Similarity=0.090 Sum_probs=82.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccH----HHHHHHHH
Q psy12642 72 QELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNI----RALYGLAL 147 (201)
Q Consensus 72 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~ 147 (201)
-.-|......|+.+.|++.|.+++.+.|..+.++.+.++++.-.| +.++|++-+++++++..+.. .++...+.
T Consensus 47 El~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~---~~e~ALdDLn~AleLag~~trtacqa~vQRg~ 123 (175)
T KOG4555|consen 47 ELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQG---DDEEALDDLNKALELAGDQTRTACQAFVQRGL 123 (175)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcC---ChHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 345777778899999999999999999999999999999999999 99999999999998876533 47889999
Q ss_pred HHHHhhhhhhhhhhhHHHHHHHhHHHHHHH
Q psy12642 148 SCHQVLTSAKCSAAKKKEISKQMMWVSKHL 177 (201)
Q Consensus 148 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l 177 (201)
+|...|+.+.|+......++--.+.+..+|
T Consensus 124 lyRl~g~dd~AR~DFe~AA~LGS~FAr~QL 153 (175)
T KOG4555|consen 124 LYRLLGNDDAARADFEAAAQLGSKFAREQL 153 (175)
T ss_pred HHHHhCchHHHHHhHHHHHHhCCHHHHHHH
Confidence 999999999997766555443334444433
No 182
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.80 E-value=5.9e-07 Score=61.92 Aligned_cols=122 Identities=19% Similarity=0.168 Sum_probs=106.3
Q ss_pred HHHhhhhccCHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHhcC
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIK-IDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD--QETWQELCDLYLSEG 82 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~-~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~~ 82 (201)
.+..+...|++.+|...|++++. ....++..+..++...+..+++..|...+++..+.+|.. ++....+|..+-.+|
T Consensus 95 La~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g 174 (251)
T COG4700 95 LANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQG 174 (251)
T ss_pred HHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcC
Confidence 55678889999999999999987 456788999999999999999999999999999988764 677888999999999
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Q psy12642 83 DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMA 131 (201)
Q Consensus 83 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~a 131 (201)
.+.+|...|+.++...|+ +.....++..+.++| +.+++..-+...
T Consensus 175 ~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qg---r~~ea~aq~~~v 219 (251)
T COG4700 175 KYADAESAFEVAISYYPG-PQARIYYAEMLAKQG---RLREANAQYVAV 219 (251)
T ss_pred CchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhc---chhHHHHHHHHH
Confidence 999999999999999988 778888999999999 777765554443
No 183
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.77 E-value=7.6e-07 Score=62.87 Aligned_cols=94 Identities=11% Similarity=-0.027 Sum_probs=87.6
Q ss_pred hhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHH
Q psy12642 10 CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVF 89 (201)
Q Consensus 10 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 89 (201)
|-..|-+.-|.-.|.+++.+.|.-+.++..+|..+...|+++.|.+.|+..++++|..--+..+.|..++.-|+++-|..
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHH
Confidence 44567777888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCHH
Q psy12642 90 CMEELFLHHPHNHL 103 (201)
Q Consensus 90 ~~~~al~~~~~~~~ 103 (201)
.+.+.-+.+|++|.
T Consensus 155 d~~~fYQ~D~~DPf 168 (297)
T COG4785 155 DLLAFYQDDPNDPF 168 (297)
T ss_pred HHHHHHhcCCCChH
Confidence 99999999999885
No 184
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.76 E-value=4.6e-06 Score=59.41 Aligned_cols=153 Identities=24% Similarity=0.194 Sum_probs=126.0
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHhc
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKIC-ILKAKNKIPEAIKELTEYLKKFM---TDQETWQELCDLYLSE 81 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~-~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~ 81 (201)
........+++..++..+..++...+.........+. ++...|+++.|...+.+++...| .........+..+...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (291)
T COG0457 101 LGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEAL 180 (291)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHh
Confidence 3345566788999999999999988777655666666 89999999999999999988776 3456666677778889
Q ss_pred CCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642 82 GDYAKAVFCMEELFLHHPH-NHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSA 160 (201)
Q Consensus 82 ~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 160 (201)
++++.++..+.+++...+. ....+..++..+...+ .++.|+..+..++...|.....+..++..+...+....+..
T Consensus 181 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (291)
T COG0457 181 GRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG---KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALE 257 (291)
T ss_pred cCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc---cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHH
Confidence 9999999999999999999 6899999999999999 99999999999999999867777777777775554555544
Q ss_pred h
Q psy12642 161 A 161 (201)
Q Consensus 161 ~ 161 (201)
.
T Consensus 258 ~ 258 (291)
T COG0457 258 A 258 (291)
T ss_pred H
Confidence 3
No 185
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.76 E-value=1.1e-08 Score=61.72 Aligned_cols=68 Identities=18% Similarity=0.253 Sum_probs=56.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc---CC-CC---HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCC
Q psy12642 65 MTDQETWQELCDLYLSEGDYAKAVFCMEELFLH---HP-HN---HLLHQRYADILYTQGGLENIELAISHYLMAINLN 135 (201)
Q Consensus 65 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~~-~~---~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~ 135 (201)
|+-..++..+|.+|..+|++++|+.+|++++.+ .+ ++ ..++..+|.++...| ++++|++++++++++.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g---~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLG---DYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhh
Confidence 344678899999999999999999999999965 22 22 447899999999999 9999999999998753
No 186
>KOG2053|consensus
Probab=98.75 E-value=6.9e-07 Score=74.14 Aligned_cols=138 Identities=20% Similarity=0.087 Sum_probs=112.6
Q ss_pred HHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHH
Q psy12642 7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAK 86 (201)
Q Consensus 7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 86 (201)
|......++|.+|+....+.++..|+...+....|.+..++|+.++|..+++..-...++|......+-.+|..+|++++
T Consensus 16 i~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 16 IYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhH
Confidence 34567789999999999999999999999999999999999999999988888887888888888889999999999999
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHH
Q psy12642 87 AVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALS 148 (201)
Q Consensus 87 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 148 (201)
|+.+|++++..+|+ ......+=.+|.+.+ .|.+-.+.--+..+..|+++-.++...-+
T Consensus 96 ~~~~Ye~~~~~~P~-eell~~lFmayvR~~---~yk~qQkaa~~LyK~~pk~~yyfWsV~Sl 153 (932)
T KOG2053|consen 96 AVHLYERANQKYPS-EELLYHLFMAYVREK---SYKKQQKAALQLYKNFPKRAYYFWSVISL 153 (932)
T ss_pred HHHHHHHHHhhCCc-HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhCCcccchHHHHHHH
Confidence 99999999999999 776666666777776 66554444444444667665544444333
No 187
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.73 E-value=4.8e-07 Score=68.09 Aligned_cols=140 Identities=18% Similarity=0.130 Sum_probs=104.3
Q ss_pred HhhhhccCHHHHHHHHHHHHhcC-----c-ccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcCCC------HHHHHHH
Q psy12642 8 IGCFHFFRYEEALEHLETIIKID-----E-TNTAARKRKICILKAK-NKIPEAIKELTEYLKKFMTD------QETWQEL 74 (201)
Q Consensus 8 ~~~~~~~~~~~A~~~~~~~l~~~-----~-~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~p~~------~~~~~~l 74 (201)
..+++..++++|+.+|++++... | .-..++..+|.+|... |++++|++.|++++.....+ ..++..+
T Consensus 82 a~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~ 161 (282)
T PF14938_consen 82 ANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKA 161 (282)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHH
Confidence 33455669999999999999853 1 2246788899999998 99999999999999864322 3567788
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCC------H-HHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCccc-----HHHH
Q psy12642 75 CDLYLSEGDYAKAVFCMEELFLHHPHN------H-LLHQRYADILYTQGGLENIELAISHYLMAINLNEKN-----IRAL 142 (201)
Q Consensus 75 ~~~~~~~~~~~~A~~~~~~al~~~~~~------~-~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~ 142 (201)
|.++...|+|++|+..|++.....-++ . ..++..+.++...| ++..|.+.+++....+|.. ....
T Consensus 162 A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~---D~v~A~~~~~~~~~~~~~F~~s~E~~~~ 238 (282)
T PF14938_consen 162 ADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMG---DYVAARKALERYCSQDPSFASSREYKFL 238 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHGTTSTTSTTSHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCCCcHHHHHH
Confidence 999999999999999999998753221 1 34567788999999 9999999999999998843 3344
Q ss_pred HHHHHHHH
Q psy12642 143 YGLALSCH 150 (201)
Q Consensus 143 ~~l~~~~~ 150 (201)
..|..++.
T Consensus 239 ~~l~~A~~ 246 (282)
T PF14938_consen 239 EDLLEAYE 246 (282)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45555554
No 188
>KOG1915|consensus
Probab=98.71 E-value=1.6e-05 Score=62.29 Aligned_cols=153 Identities=13% Similarity=0.028 Sum_probs=122.7
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYA 85 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 85 (201)
|+-==..++++..|...++.++..+..+...|...+.+-+..+....|...+.+++.+-|.-...|+.....--..|+..
T Consensus 79 YaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~ 158 (677)
T KOG1915|consen 79 YAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIA 158 (677)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccH
Confidence 33333567889999999999999999999999999999999999999999999999999988888888877777889999
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhH
Q psy12642 86 KAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKK 163 (201)
Q Consensus 86 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 163 (201)
.|...|++-+...|+ ..+|......-..-+ +.+.|...|++.+-..|+ ..+|...+..-.+-|+...++....
T Consensus 159 gaRqiferW~~w~P~-eqaW~sfI~fElRyk---eieraR~IYerfV~~HP~-v~~wikyarFE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 159 GARQIFERWMEWEPD-EQAWLSFIKFELRYK---EIERARSIYERFVLVHPK-VSNWIKYARFEEKHGNVALARSVYE 231 (677)
T ss_pred HHHHHHHHHHcCCCc-HHHHHHHHHHHHHhh---HHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 999999999888887 667777666666666 788888888888877776 6667777777777776666655433
No 189
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.70 E-value=9.6e-06 Score=58.83 Aligned_cols=106 Identities=12% Similarity=0.062 Sum_probs=89.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHH---HHH
Q psy12642 33 NTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD---QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHL---LHQ 106 (201)
Q Consensus 33 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~ 106 (201)
.+..++.-|...+..|++++|++.|+.+...+|.+ ..+...++.++++.++++.|+..+++.+.+.|.++. +.+
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 46778889999999999999999999999998877 467888999999999999999999999999997754 566
Q ss_pred HHHHHHHHcC-----CcccHHHHHHHHHHHHcCCccc
Q psy12642 107 RYADILYTQG-----GLENIELAISHYLMAINLNEKN 138 (201)
Q Consensus 107 ~la~~~~~~~-----~~~~~~~A~~~~~~al~~~p~~ 138 (201)
..|.+++..- ++.-...|+..|+..++..|+.
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS 149 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNS 149 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCC
Confidence 6677766443 2234678999999999999985
No 190
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.67 E-value=6.8e-08 Score=51.34 Aligned_cols=40 Identities=18% Similarity=0.245 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHH
Q psy12642 70 TWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYA 109 (201)
Q Consensus 70 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la 109 (201)
++..+|..|..+|++++|+..|+++++.+|+|+.++..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 3444445555555555555555555555555554444444
No 191
>KOG1130|consensus
Probab=98.67 E-value=1.1e-07 Score=72.81 Aligned_cols=143 Identities=11% Similarity=0.026 Sum_probs=112.0
Q ss_pred CHHHHHHHHHHHHhcCcc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhcC
Q psy12642 15 RYEEALEHLETIIKIDET------NTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD------QETWQELCDLYLSEG 82 (201)
Q Consensus 15 ~~~~A~~~~~~~l~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~ 82 (201)
.++.|.++|..-++.... -..++-.+|..|+-+|+|++|+.+-+.-+.+.... -.++..+|.+|.-.|
T Consensus 170 al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg 249 (639)
T KOG1130|consen 170 ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLG 249 (639)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhc
Confidence 456677777766654322 22566678888999999999999988777654332 347888999999999
Q ss_pred CHHHHHHHHHHHhhc----CCC--CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCc------ccHHHHHHHHHHHH
Q psy12642 83 DYAKAVFCMEELFLH----HPH--NHLLHQRYADILYTQGGLENIELAISHYLMAINLNE------KNIRALYGLALSCH 150 (201)
Q Consensus 83 ~~~~A~~~~~~al~~----~~~--~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~ 150 (201)
+++.|+++|+..+.+ ... .....+.+|.+|.-.. ++++|+.++.+-+.+.. ...++.|.|+..+.
T Consensus 250 ~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~---e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~ 326 (639)
T KOG1130|consen 250 NFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLK---EVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFN 326 (639)
T ss_pred ccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 999999999988754 222 3457889999999999 99999999999876653 35689999999999
Q ss_pred Hhhhhhhhhh
Q psy12642 151 QVLTSAKCSA 160 (201)
Q Consensus 151 ~~~~~~~a~~ 160 (201)
.+|..++|..
T Consensus 327 alg~h~kAl~ 336 (639)
T KOG1130|consen 327 ALGEHRKALY 336 (639)
T ss_pred hhhhHHHHHH
Confidence 9999999854
No 192
>KOG4340|consensus
Probab=98.64 E-value=8.3e-07 Score=65.58 Aligned_cols=127 Identities=16% Similarity=0.114 Sum_probs=105.9
Q ss_pred HHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH----------------H-------
Q psy12642 5 VYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEY----------------L------- 61 (201)
Q Consensus 5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~----------------~------- 61 (201)
+.+.+|+...+|..|-++|++.-...|.........+..+...+.+.+|+...... +
T Consensus 49 lLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl 128 (459)
T KOG4340|consen 49 LLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDL 128 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccC
Confidence 35677888899999999999999999999888888888888888887777655431 1
Q ss_pred -------HhcC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Q psy12642 62 -------KKFM--TDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAI 132 (201)
Q Consensus 62 -------~~~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al 132 (201)
..-| ++.+.....|.+.++.|+++.|++-|+.+++....++..-++++.+++..+ +++.|+++....+
T Consensus 129 ~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~---qyasALk~iSEIi 205 (459)
T KOG4340|consen 129 PGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSR---QYASALKHISEII 205 (459)
T ss_pred cchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhh---hHHHHHHHHHHHH
Confidence 1123 345667778899999999999999999999999999999999999999999 9999998887766
Q ss_pred cC
Q psy12642 133 NL 134 (201)
Q Consensus 133 ~~ 134 (201)
+.
T Consensus 206 eR 207 (459)
T KOG4340|consen 206 ER 207 (459)
T ss_pred Hh
Confidence 53
No 193
>KOG1070|consensus
Probab=98.63 E-value=5.1e-06 Score=72.16 Aligned_cols=156 Identities=15% Similarity=0.110 Sum_probs=99.8
Q ss_pred chHHHHHhhhhccCHHHHHHHHHHHHhc-Cccc-------------------------------------HHHHHHHHHH
Q psy12642 2 APIVYIIGCFHFFRYEEALEHLETIIKI-DETN-------------------------------------TAARKRKICI 43 (201)
Q Consensus 2 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~~~~-------------------------------------~~~~~~~a~~ 43 (201)
.||-|+--+...++.++|.+..+++|.. ++.. ..++..+..+
T Consensus 1460 ~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~i 1539 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGI 1539 (1710)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 4566666667777888888877777763 2211 1334444555
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHHcCCcccH
Q psy12642 44 LKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPH--NHLLHQRYADILYTQGGLENI 121 (201)
Q Consensus 44 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~~~ 121 (201)
|...+++++|.++++..++.+.....+|..+|..++++++-+.|...+++|++.-|. +.......+...++.| +.
T Consensus 1540 y~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G---Da 1616 (1710)
T KOG1070|consen 1540 YEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG---DA 1616 (1710)
T ss_pred HHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC---Cc
Confidence 555666666666666666666666666777777777766666777777777766665 5556666666666667 66
Q ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642 122 ELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSA 160 (201)
Q Consensus 122 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 160 (201)
+.+...|+..+.-+|.-...|.-....-.+.|+.+..+.
T Consensus 1617 eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~ 1655 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRD 1655 (1710)
T ss_pred hhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHH
Confidence 666677777777777666666666666666555555433
No 194
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.62 E-value=1.4e-07 Score=50.06 Aligned_cols=42 Identities=24% Similarity=0.183 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q psy12642 35 AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCD 76 (201)
Q Consensus 35 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 76 (201)
.++..+|..|...|++++|++.++++++.+|+++.+|..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 578889999999999999999999999999999999998875
No 195
>KOG0376|consensus
Probab=98.62 E-value=1.1e-07 Score=73.88 Aligned_cols=102 Identities=10% Similarity=0.100 Sum_probs=76.5
Q ss_pred hhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHH
Q psy12642 10 CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVF 89 (201)
Q Consensus 10 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 89 (201)
.+..+.|+.|+..|.++++++|+++..+..++..+...+++..|+..+.++++.+|....+|+..|.++...+.+.+|+.
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~ 93 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALL 93 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHH
Confidence 45566777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHhhcCCCCHHHHHHHHHH
Q psy12642 90 CMEELFLHHPHNHLLHQRYADI 111 (201)
Q Consensus 90 ~~~~al~~~~~~~~~~~~la~~ 111 (201)
.|+....+.|+++.+...+..+
T Consensus 94 ~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 94 DLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHhhhcCcCcHHHHHHHHHH
Confidence 7777777777777776666665
No 196
>KOG0376|consensus
Probab=98.61 E-value=1.2e-07 Score=73.87 Aligned_cols=113 Identities=9% Similarity=-0.049 Sum_probs=104.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCc
Q psy12642 39 RKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGL 118 (201)
Q Consensus 39 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 118 (201)
..+.-++..++++.|+..+.++++++|++...+...+..+.+.+++..|+..+.++++.+|....+++..|.+....+
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~-- 86 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG-- 86 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH--
Confidence 345667788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhh
Q psy12642 119 ENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT 154 (201)
Q Consensus 119 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 154 (201)
.+.+|+..|+....+.|+++.+...+..|-.....
T Consensus 87 -~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~ 121 (476)
T KOG0376|consen 87 -EFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSE 121 (476)
T ss_pred -HHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988888765443
No 197
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.59 E-value=2.5e-06 Score=64.15 Aligned_cols=125 Identities=13% Similarity=0.031 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q psy12642 35 AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLS-EGDYAKAVFCMEELFLHHPHNHLLHQRYADILY 113 (201)
Q Consensus 35 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 113 (201)
.+|..+.....+.+..+.|...|.++.+..+....+|...|.+.+. .++.+.|...|+.+++..|.+...|..+...+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3566777777777889999999999997666678899999999776 566777999999999999999999999999999
Q ss_pred HcCCcccHHHHHHHHHHHHcCCcccH---HHHHHHHHHHHHhhhhhhhhhhh
Q psy12642 114 TQGGLENIELAISHYLMAINLNEKNI---RALYGLALSCHQVLTSAKCSAAK 162 (201)
Q Consensus 114 ~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~a~~~~ 162 (201)
..+ +.+.|...|++++..-|... ..|......-...|+.+....-.
T Consensus 82 ~~~---d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~ 130 (280)
T PF05843_consen 82 KLN---DINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVE 130 (280)
T ss_dssp HTT----HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHH
T ss_pred HhC---cHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999 99999999999999877655 57777777778888766654433
No 198
>KOG4642|consensus
Probab=98.58 E-value=3e-07 Score=65.55 Aligned_cols=89 Identities=15% Similarity=0.131 Sum_probs=80.2
Q ss_pred hhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHH
Q psy12642 9 GCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAV 88 (201)
Q Consensus 9 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~ 88 (201)
.|+....|+.|+..|.+++..+|+.+..+...+.++++.++++.+.....+++++.|+.....+.+|.+......|++|+
T Consensus 19 k~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred cccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHH
Confidence 46677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhc
Q psy12642 89 FCMEELFLH 97 (201)
Q Consensus 89 ~~~~~al~~ 97 (201)
.++.++..+
T Consensus 99 ~~Lqra~sl 107 (284)
T KOG4642|consen 99 KVLQRAYSL 107 (284)
T ss_pred HHHHHHHHH
Confidence 999998543
No 199
>KOG2796|consensus
Probab=98.58 E-value=7.9e-06 Score=59.46 Aligned_cols=159 Identities=11% Similarity=0.038 Sum_probs=123.6
Q ss_pred HHHHhhhhccCHHHHHHHHHHHHhc------------Cccc---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy12642 5 VYIIGCFHFFRYEEALEHLETIIKI------------DETN---------TAARKRKICILKAKNKIPEAIKELTEYLKK 63 (201)
Q Consensus 5 ~~~~~~~~~~~~~~A~~~~~~~l~~------------~~~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 63 (201)
+++......|+..+.+.-+...... .|.+ ..+.+.+..++...|.|.-....+.+.++.
T Consensus 127 lhAe~~~~lgnpqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~ 206 (366)
T KOG2796|consen 127 LHAELQQYLGNPQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKY 206 (366)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHh
Confidence 4555556667777666555443321 1111 245666777888899999999999999998
Q ss_pred c-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc----C--CCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCc
Q psy12642 64 F-MTDQETWQELCDLYLSEGDYAKAVFCMEELFLH----H--PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNE 136 (201)
Q Consensus 64 ~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~--~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p 136 (201)
+ |.++.....+|.+-+..|+.+.|..+|+..-+. + ..+..+..+.+.++.-.+ ++..|...|.+++..+|
T Consensus 207 ~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~n---n~a~a~r~~~~i~~~D~ 283 (366)
T KOG2796|consen 207 YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQN---NFAEAHRFFTEILRMDP 283 (366)
T ss_pred CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheeccc---chHHHHHHHhhccccCC
Confidence 8 667889999999999999999999999965533 2 234456777778888778 99999999999999999
Q ss_pred ccHHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q psy12642 137 KNIRALYGLALSCHQVLTSAKCSAAKKKEI 166 (201)
Q Consensus 137 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 166 (201)
.++.+..+-+.|..-+|+...|.+......
T Consensus 284 ~~~~a~NnKALcllYlg~l~DAiK~~e~~~ 313 (366)
T KOG2796|consen 284 RNAVANNNKALCLLYLGKLKDALKQLEAMV 313 (366)
T ss_pred CchhhhchHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999977555443
No 200
>KOG4642|consensus
Probab=98.56 E-value=2.1e-07 Score=66.32 Aligned_cols=92 Identities=12% Similarity=-0.050 Sum_probs=85.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcc
Q psy12642 40 KICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLE 119 (201)
Q Consensus 40 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 119 (201)
.|..++.-..+..|+..|.+++..+|..+..|...+.+|++.++++.+.....++++++|+....++.+|.+.....
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~--- 92 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK--- 92 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc---
Confidence 45566677889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHcC
Q psy12642 120 NIELAISHYLMAINL 134 (201)
Q Consensus 120 ~~~~A~~~~~~al~~ 134 (201)
.+++|+..+.++..+
T Consensus 93 ~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 93 GYDEAIKVLQRAYSL 107 (284)
T ss_pred cccHHHHHHHHHHHH
Confidence 999999999999654
No 201
>KOG1070|consensus
Probab=98.52 E-value=1.6e-05 Score=69.27 Aligned_cols=151 Identities=19% Similarity=0.147 Sum_probs=128.5
Q ss_pred hhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHhcCCHHHH
Q psy12642 10 CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMT--DQETWQELCDLYLSEGDYAKA 87 (201)
Q Consensus 10 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~~~~A 87 (201)
|...+.+++|.++|+..++.-.+...+|...+..++.+++-+.|...+.++++.-|. +..+....+++-++.|+.+.+
T Consensus 1540 y~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRG 1619 (1710)
T KOG1070|consen 1540 YEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERG 1619 (1710)
T ss_pred HHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhh
Confidence 567889999999999999999889999999999999999999999999999999998 688888999999999999999
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCC--cccHHHHHHHHHHHHHhhhhhhhhhhhH
Q psy12642 88 VFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLN--EKNIRALYGLALSCHQVLTSAKCSAAKK 163 (201)
Q Consensus 88 ~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 163 (201)
...|+..+..+|.-..+|..+...-...+ +.+.+...|++++.+. |....-++..=.-|.+.-..++.....+
T Consensus 1620 RtlfEgll~ayPKRtDlW~VYid~eik~~---~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VK 1694 (1710)
T KOG1070|consen 1620 RTLFEGLLSAYPKRTDLWSVYIDMEIKHG---DIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVK 1694 (1710)
T ss_pred HHHHHHHHhhCccchhHHHHHHHHHHccC---CHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHH
Confidence 99999999999999999999999999999 9999999999999765 5555555555555554433333333333
No 202
>KOG1130|consensus
Probab=98.50 E-value=7.1e-07 Score=68.61 Aligned_cols=151 Identities=20% Similarity=0.184 Sum_probs=108.1
Q ss_pred hhhccCHHHHHHHHHHHHhcC------cccHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHh
Q psy12642 10 CFHFFRYEEALEHLETIIKID------ETNTAARKRKICILKAKNK--------------------IPEAIKELTEYLKK 63 (201)
Q Consensus 10 ~~~~~~~~~A~~~~~~~l~~~------~~~~~~~~~~a~~~~~~~~--------------------~~~A~~~~~~~~~~ 63 (201)
+--.|.|++|+.+..+-+... -....+++.+|.+|...|+ ++.|.++|..-+++
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 334688888888777766543 1234788999999988764 34455555544443
Q ss_pred cCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC------CHHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Q psy12642 64 FMTD------QETWQELCDLYLSEGDYAKAVFCMEELFLHHPH------NHLLHQRYADILYTQGGLENIELAISHYLMA 131 (201)
Q Consensus 64 ~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~~~~~~~~~A~~~~~~a 131 (201)
.... ..++-.+|..|+-.|+|+.|+..-+.=+.+... .-.++.++|.++...| +++.|+++|+..
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg---~fe~A~ehYK~t 261 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLG---NFELAIEHYKLT 261 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhc---ccHhHHHHHHHH
Confidence 2211 235667888899999999999988776655432 1347889999999999 999999999997
Q ss_pred HcCCc------ccHHHHHHHHHHHHHhhhhhhhhhhhH
Q psy12642 132 INLNE------KNIRALYGLALSCHQVLTSAKCSAAKK 163 (201)
Q Consensus 132 l~~~p------~~~~~~~~l~~~~~~~~~~~~a~~~~~ 163 (201)
+.+.- ......|.|+..|.-..++.+|+....
T Consensus 262 l~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~ 299 (639)
T KOG1130|consen 262 LNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQ 299 (639)
T ss_pred HHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 65432 235567899999999999999977543
No 203
>KOG2053|consensus
Probab=98.48 E-value=4.2e-06 Score=69.65 Aligned_cols=112 Identities=18% Similarity=0.123 Sum_probs=103.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHH
Q psy12642 44 LKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIEL 123 (201)
Q Consensus 44 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~ 123 (201)
....+++++|.....+.++..|+.+.+...-|.++.++|+.++|..+++..-...+++...+..+..+|...+ .+++
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~---~~d~ 95 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLG---KLDE 95 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHh---hhhH
Confidence 3456899999999999999999999999999999999999999998888887888889999999999999999 9999
Q ss_pred HHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhh
Q psy12642 124 AISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCS 159 (201)
Q Consensus 124 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~ 159 (201)
|..+|++++..+|+ ...++.+=++|.+.+++.+-.
T Consensus 96 ~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQ 130 (932)
T KOG2053|consen 96 AVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQ 130 (932)
T ss_pred HHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 888999999999999887653
No 204
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.45 E-value=4e-05 Score=66.71 Aligned_cols=152 Identities=12% Similarity=-0.009 Sum_probs=117.0
Q ss_pred HhhhhccCHHHHHHHHHHHHhcCcccH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHH
Q psy12642 8 IGCFHFFRYEEALEHLETIIKIDETNT-----AARKRKICILKAKNKIPEAIKELTEYLKKFMTD------QETWQELCD 76 (201)
Q Consensus 8 ~~~~~~~~~~~A~~~~~~~l~~~~~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~ 76 (201)
..+...|++++|...++.++...+... .+...+|.++...|++++|...+.+++...... ..+...+|.
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 445678999999999999988544322 355677888999999999999999998754321 235567899
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCC--------CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCc-----ccHHHHH
Q psy12642 77 LYLSEGDYAKAVFCMEELFLHHPH--------NHLLHQRYADILYTQGGLENIELAISHYLMAINLNE-----KNIRALY 143 (201)
Q Consensus 77 ~~~~~~~~~~A~~~~~~al~~~~~--------~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~ 143 (201)
++...|++++|...+++++..... .......+|.++...| ++++|...+.+++.... ....++.
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G---~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 616 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA---RLDEAEQCARKGLEVLSNYQPQQQLQCLA 616 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc---CHHHHHHHHHHhHHhhhccCchHHHHHHH
Confidence 999999999999999999875221 1234567888999999 99999999999987532 2345667
Q ss_pred HHHHHHHHhhhhhhhhhhh
Q psy12642 144 GLALSCHQVLTSAKCSAAK 162 (201)
Q Consensus 144 ~l~~~~~~~~~~~~a~~~~ 162 (201)
.++.++...|+...|....
T Consensus 617 ~la~~~~~~G~~~~A~~~l 635 (903)
T PRK04841 617 MLAKISLARGDLDNARRYL 635 (903)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 7888999999988886543
No 205
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.43 E-value=3.4e-07 Score=45.63 Aligned_cols=32 Identities=28% Similarity=0.613 Sum_probs=18.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHH
Q psy12642 57 LTEYLKKFMTDQETWQELCDLYLSEGDYAKAV 88 (201)
Q Consensus 57 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~ 88 (201)
|+++++.+|+++.+|+.+|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555555555555555555555555555553
No 206
>KOG0545|consensus
Probab=98.41 E-value=6.4e-06 Score=59.28 Aligned_cols=103 Identities=17% Similarity=0.104 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--------hcCCCH----------HHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q psy12642 35 AARKRKICILKAKNKIPEAIKELTEYLK--------KFMTDQ----------ETWQELCDLYLSEGDYAKAVFCMEELFL 96 (201)
Q Consensus 35 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~--------~~p~~~----------~~~~~l~~~~~~~~~~~~A~~~~~~al~ 96 (201)
.++...|.-++..|++++|...|..++- ..|.++ +.+.+.++|++..|+|-++++.....+.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 6677788889999999999998888764 245553 3567789999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHH
Q psy12642 97 HHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIR 140 (201)
Q Consensus 97 ~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 140 (201)
.+|+|..+++..|.++...= +.++|..-|.++++++|.-..
T Consensus 259 ~~~~nvKA~frRakAhaa~W---n~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 259 HHPGNVKAYFRRAKAHAAVW---NEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred cCCchHHHHHHHHHHHHhhc---CHHHHHHHHHHHHhcChhhHH
Confidence 99999999999999999988 899999999999999997433
No 207
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.40 E-value=9.9e-07 Score=43.87 Aligned_cols=33 Identities=30% Similarity=0.559 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q psy12642 69 ETWQELCDLYLSEGDYAKAVFCMEELFLHHPHN 101 (201)
Q Consensus 69 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 101 (201)
.+|+.+|.+++.+|++++|+.+|++++.++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 455666666666666666666666666666653
No 208
>KOG2610|consensus
Probab=98.40 E-value=2.4e-05 Score=58.95 Aligned_cols=150 Identities=10% Similarity=-0.088 Sum_probs=120.2
Q ss_pred hhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCC---HHHHHHHHHHHHhcCCHH
Q psy12642 10 CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKK-FMTD---QETWQELCDLYLSEGDYA 85 (201)
Q Consensus 10 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~p~~---~~~~~~l~~~~~~~~~~~ 85 (201)
+...|++.+|...++++++..|.+.-++...-.+++..|+...-...+++.+.. +|+- ..+.-.++..+...|-|+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 455688999999999999999999988888888899999999988889988876 5544 333444567778899999
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc----cHHHHHHHHHHHHHhhhhhhhhhh
Q psy12642 86 KAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK----NIRALYGLALSCHQVLTSAKCSAA 161 (201)
Q Consensus 86 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~~~~a~~~ 161 (201)
+|.+.-.++++++|.+..+....+.++...+ ++.++.+...+.-..-.. -...|+..+.++..-+.+++|...
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~---r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNG---RHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcc---hhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 9999999999999999999999999999999 999999988765332211 123567788888888888888553
Q ss_pred h
Q psy12642 162 K 162 (201)
Q Consensus 162 ~ 162 (201)
.
T Consensus 270 y 270 (491)
T KOG2610|consen 270 Y 270 (491)
T ss_pred H
Confidence 3
No 209
>KOG2471|consensus
Probab=98.40 E-value=2.4e-06 Score=67.01 Aligned_cols=141 Identities=17% Similarity=0.139 Sum_probs=115.0
Q ss_pred hhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhcCC--------CHHHHHHHHHHHHh
Q psy12642 10 CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEY-LKKFMT--------DQETWQELCDLYLS 80 (201)
Q Consensus 10 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-~~~~p~--------~~~~~~~l~~~~~~ 80 (201)
+.+..+..-+....+.+.....+.+.+....+..++..|++.+|.+.+... +...|. ..-+|..+|.+++.
T Consensus 216 llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~ 295 (696)
T KOG2471|consen 216 LLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQ 295 (696)
T ss_pred HHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeee
Confidence 455566677777777777777788899999999999999999999987653 333333 23367889999999
Q ss_pred cCCHHHHHHHHHHHhh-c--------CC---------CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHH
Q psy12642 81 EGDYAKAVFCMEELFL-H--------HP---------HNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRAL 142 (201)
Q Consensus 81 ~~~~~~A~~~~~~al~-~--------~~---------~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 142 (201)
.|.|.-+..+|.+++. . .| ......++.|..+...| +.-.|.++|.+++...-.+|+.|
T Consensus 296 ~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~g---rPl~AfqCf~~av~vfh~nPrlW 372 (696)
T KOG2471|consen 296 LGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSG---RPLLAFQCFQKAVHVFHRNPRLW 372 (696)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcC---CcHHHHHHHHHHHHHHhcCcHHH
Confidence 9999999999999995 1 11 23457899999999999 99999999999999999999999
Q ss_pred HHHHHHHHHhh
Q psy12642 143 YGLALSCHQVL 153 (201)
Q Consensus 143 ~~l~~~~~~~~ 153 (201)
..++.|+....
T Consensus 373 LRlAEcCima~ 383 (696)
T KOG2471|consen 373 LRLAECCIMAL 383 (696)
T ss_pred HHHHHHHHHHh
Confidence 99999998643
No 210
>KOG0551|consensus
Probab=98.38 E-value=6.6e-05 Score=56.38 Aligned_cols=104 Identities=17% Similarity=0.133 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q psy12642 35 AARKRKICILKAKNKIPEAIKELTEYLKKFMTD----QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYAD 110 (201)
Q Consensus 35 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 110 (201)
.-+..-|.-|+..++|..|+..|.+.++..-.| ...|.+.+-+.+..|+|..|+....+++..+|.+..++.+-+.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 445556888999999999999999999976555 4568888999999999999999999999999999999999999
Q ss_pred HHHHcCCcccHHHHHHHHHHHHcCCcccHHH
Q psy12642 111 ILYTQGGLENIELAISHYLMAINLNEKNIRA 141 (201)
Q Consensus 111 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 141 (201)
|++.+. .+.+|+.+.+..++++.+.-.+
T Consensus 162 c~~eLe---~~~~a~nw~ee~~~~d~e~K~~ 189 (390)
T KOG0551|consen 162 CLLELE---RFAEAVNWCEEGLQIDDEAKKA 189 (390)
T ss_pred HHHHHH---HHHHHHHHHhhhhhhhHHHHHH
Confidence 999999 9999999999999888664443
No 211
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.38 E-value=8.1e-07 Score=44.27 Aligned_cols=32 Identities=25% Similarity=0.461 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q psy12642 69 ETWQELCDLYLSEGDYAKAVFCMEELFLHHPH 100 (201)
Q Consensus 69 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 100 (201)
.+|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35566666666666666666666666666654
No 212
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.36 E-value=0.00025 Score=57.24 Aligned_cols=143 Identities=17% Similarity=0.023 Sum_probs=107.2
Q ss_pred ccCHHHHHHHHHHHHhcCc-ccHHHH------HHHHHHHH----HcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q psy12642 13 FFRYEEALEHLETIIKIDE-TNTAAR------KRKICILK----AKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSE 81 (201)
Q Consensus 13 ~~~~~~A~~~~~~~l~~~~-~~~~~~------~~~a~~~~----~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 81 (201)
.||-+.++..+.++.+... ..+.+- +.....+. .....+.|.+.+.......|+..-..+..|.++...
T Consensus 201 ~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~ 280 (468)
T PF10300_consen 201 SGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLK 280 (468)
T ss_pred CCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 4899999999999887332 122111 11111111 234678899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhcCCC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHH-HHHHHHHHHHhhhhh
Q psy12642 82 GDYAKAVFCMEELFLHHPH----NHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRA-LYGLALSCHQVLTSA 156 (201)
Q Consensus 82 ~~~~~A~~~~~~al~~~~~----~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~l~~~~~~~~~~~ 156 (201)
|+.++|+..|++++..... ....++.++.++.... +|++|..+|.+..+.+...... .|..|-|+...|+.+
T Consensus 281 g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~---~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~ 357 (468)
T PF10300_consen 281 GNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQH---DWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREE 357 (468)
T ss_pred cCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHc---hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccch
Confidence 9999999999998853332 2346788999999999 9999999999999987764443 355677777788773
Q ss_pred hh
Q psy12642 157 KC 158 (201)
Q Consensus 157 ~a 158 (201)
.+
T Consensus 358 ~~ 359 (468)
T PF10300_consen 358 EA 359 (468)
T ss_pred hh
Confidence 33
No 213
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.33 E-value=0.00042 Score=60.45 Aligned_cols=155 Identities=14% Similarity=0.011 Sum_probs=116.4
Q ss_pred HHHHhhhhccCHHHHHHHHHHHHhcCcc---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-----HH
Q psy12642 5 VYIIGCFHFFRYEEALEHLETIIKIDET---------NTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ-----ET 70 (201)
Q Consensus 5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-----~~ 70 (201)
..+..+...|++++|...+..+....+. ...+...++.++...|++++|...+++++...|... .+
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 493 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVA 493 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 3455567789999999999988654221 124445567888899999999999999988655432 34
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--C----HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc-------
Q psy12642 71 WQELCDLYLSEGDYAKAVFCMEELFLHHPH--N----HLLHQRYADILYTQGGLENIELAISHYLMAINLNEK------- 137 (201)
Q Consensus 71 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~----~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~------- 137 (201)
...+|.++...|++++|...+++++..... + ......+|.++...| +++.|...+.+++.....
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G---~~~~A~~~~~~al~~~~~~~~~~~~ 570 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG---FLQAAYETQEKAFQLIEEQHLEQLP 570 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHhcccccc
Confidence 566888999999999999999999865332 1 235677899999999 999999999998875321
Q ss_pred -cHHHHHHHHHHHHHhhhhhhhhhhh
Q psy12642 138 -NIRALYGLALSCHQVLTSAKCSAAK 162 (201)
Q Consensus 138 -~~~~~~~l~~~~~~~~~~~~a~~~~ 162 (201)
....+..++.++...|+.++|....
T Consensus 571 ~~~~~~~~la~~~~~~G~~~~A~~~~ 596 (903)
T PRK04841 571 MHEFLLRIRAQLLWEWARLDEAEQCA 596 (903)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 1234557788888899999886543
No 214
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.33 E-value=1.7e-05 Score=63.89 Aligned_cols=119 Identities=18% Similarity=0.072 Sum_probs=98.8
Q ss_pred ccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCCHHHHH
Q psy12642 13 FFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD----QETWQELCDLYLSEGDYAKAV 88 (201)
Q Consensus 13 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~~~~~~A~ 88 (201)
..+.+.|.+.++...+..|+.....+..|.++...|+.++|++.+++++.....- .-.++.+|.++..+.+|++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 4677889999999999999999999999999999999999999999888533222 346778999999999999999
Q ss_pred HHHHHHhhcCCCCH-HHHHHHHHHHHHcCCcccH-------HHHHHHHHHHHcC
Q psy12642 89 FCMEELFLHHPHNH-LLHQRYADILYTQGGLENI-------ELAISHYLMAINL 134 (201)
Q Consensus 89 ~~~~~al~~~~~~~-~~~~~la~~~~~~~~~~~~-------~~A~~~~~~al~~ 134 (201)
.+|.+.++.+.-+. .+.+..|.++...+ +. ++|...|.++-..
T Consensus 326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~---~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAFYAYLAAACLLMLG---REEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhc---cchhhhhhHHHHHHHHHHHHHH
Confidence 99999998776543 35566788888888 66 8888888876543
No 215
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=9.5e-05 Score=54.77 Aligned_cols=142 Identities=15% Similarity=0.058 Sum_probs=72.1
Q ss_pred hhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH--HHHHhcCCHHH
Q psy12642 9 GCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELC--DLYLSEGDYAK 86 (201)
Q Consensus 9 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~--~~~~~~~~~~~ 86 (201)
.....|++.+|...|..++...|.+..+...++.++...|+.+.|...+...-.....+. .....+ .++.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~-~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKA-AHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhH-HHHHHHHHHHHHHHhcCCC
Confidence 445566666666666666666666666666666666666666666555544222111110 000001 12222222221
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCc--ccHHHHHHHHHHHHHhhhh
Q psy12642 87 AVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNE--KNIRALYGLALSCHQVLTS 155 (201)
Q Consensus 87 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~ 155 (201)
. ..+++.+..+|+|...-+.++..+...| +.++|.+.+-..++.+- ++..+...+..++...|..
T Consensus 222 ~-~~l~~~~aadPdd~~aa~~lA~~~~~~g---~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~ 288 (304)
T COG3118 222 I-QDLQRRLAADPDDVEAALALADQLHLVG---RNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPA 288 (304)
T ss_pred H-HHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCC
Confidence 1 2233444456666666666666666666 66666666666665543 2344445555555555533
No 216
>KOG1941|consensus
Probab=98.27 E-value=2.8e-05 Score=59.13 Aligned_cols=152 Identities=13% Similarity=0.055 Sum_probs=115.2
Q ss_pred HhhhhccCHHHHHHHHHHHHhcCcccH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHH
Q psy12642 8 IGCFHFFRYEEALEHLETIIKIDETNT-----AARKRKICILKAKNKIPEAIKELTEYLKKFMTD------QETWQELCD 76 (201)
Q Consensus 8 ~~~~~~~~~~~A~~~~~~~l~~~~~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~ 76 (201)
..+.+..++.+++.+-+..+......+ .+...++..+..++.++++++.|+.+++...++ ..++..+|.
T Consensus 91 r~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgs 170 (518)
T KOG1941|consen 91 RSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGS 170 (518)
T ss_pred HHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHH
Confidence 445556677777777777666543333 566778889999999999999999999864433 346778999
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCC----CCH------HHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCC------cccHH
Q psy12642 77 LYLSEGDYAKAVFCMEELFLHHP----HNH------LLHQRYADILYTQGGLENIELAISHYLMAINLN------EKNIR 140 (201)
Q Consensus 77 ~~~~~~~~~~A~~~~~~al~~~~----~~~------~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~~ 140 (201)
+|....++++|+-+..++..+-. +++ ...+.++..+...| ..-+|.++.+++.++. |-..+
T Consensus 171 lf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G---~LgdA~e~C~Ea~klal~~Gdra~~ar 247 (518)
T KOG1941|consen 171 LFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLG---RLGDAMECCEEAMKLALQHGDRALQAR 247 (518)
T ss_pred HHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhc---ccccHHHHHHHHHHHHHHhCChHHHHH
Confidence 99999999999999988886532 232 25677888999999 9999999998887654 34566
Q ss_pred HHHHHHHHHHHhhhhhhhhhhh
Q psy12642 141 ALYGLALSCHQVLTSAKCSAAK 162 (201)
Q Consensus 141 ~~~~l~~~~~~~~~~~~a~~~~ 162 (201)
...-++.+|...|+.+.|-..+
T Consensus 248 c~~~~aDIyR~~gd~e~af~rY 269 (518)
T KOG1941|consen 248 CLLCFADIYRSRGDLERAFRRY 269 (518)
T ss_pred HHHHHHHHHHhcccHhHHHHHH
Confidence 7788999999999988875433
No 217
>KOG3081|consensus
Probab=98.27 E-value=0.00011 Score=53.70 Aligned_cols=127 Identities=15% Similarity=0.087 Sum_probs=101.4
Q ss_pred hhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Q psy12642 10 CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKA----KNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYA 85 (201)
Q Consensus 10 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 85 (201)
+.+..+++-|...++++.+.+.+. .+..++..+.. .++..+|.-+|++.-...|..+......+.+++.+|+|+
T Consensus 147 ~lk~~r~d~A~~~lk~mq~ided~--tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~e 224 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQIDEDA--TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYE 224 (299)
T ss_pred HHHHHHHHHHHHHHHHHHccchHH--HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHH
Confidence 456678888999999988776543 44445554443 356889999999999888888999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHH
Q psy12642 86 KAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIR 140 (201)
Q Consensus 86 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 140 (201)
+|...++.++..+++++..+.++..+-...|+ +.+---+...+.....|+.+.
T Consensus 225 eAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gk--d~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 225 EAESLLEEALDKDAKDPETLANLIVLALHLGK--DAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC--ChHHHHHHHHHHHhcCCcchH
Confidence 99999999999999999999999998888883 334445666667777787654
No 218
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.27 E-value=9.8e-07 Score=43.94 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=15.9
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHH
Q psy12642 91 MEELFLHHPHNHLLHQRYADILYTQGGLENIELA 124 (201)
Q Consensus 91 ~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A 124 (201)
|+++|+++|+++.+++.+|.++...| ++++|
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g---~~~~A 32 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQG---DYEEA 32 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCc---CHHhh
Confidence 34455555555555555555555555 55444
No 219
>KOG1586|consensus
Probab=98.25 E-value=0.00069 Score=48.73 Aligned_cols=130 Identities=15% Similarity=0.103 Sum_probs=90.5
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcCcccHH------HHHHHHHHHHHc-CCHHHHHHHHHHHHHhcCCC------HHHHH
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKIDETNTA------ARKRKICILKAK-NKIPEAIKELTEYLKKFMTD------QETWQ 72 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~------~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~p~~------~~~~~ 72 (201)
-+-.+++..+..+|+.++++++++..+-.. .+..+|.+|-.. .++++|+.+|+++-+..... ..++.
T Consensus 79 eA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~l 158 (288)
T KOG1586|consen 79 EAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLL 158 (288)
T ss_pred HHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHH
Confidence 344467777888888888888877644332 234677777655 78888888888887755433 22444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCHH-------HHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCccc
Q psy12642 73 ELCDLYLSEGDYAKAVFCMEELFLHHPHNHL-------LHQRYADILYTQGGLENIELAISHYLMAINLNEKN 138 (201)
Q Consensus 73 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-------~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 138 (201)
..+..-...++|.+|+..|++.....-+|+. .++.-|.|+.... +.-.+...+++..+++|..
T Consensus 159 KvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~---D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 159 KVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKA---DEVNAQRALEKYQELDPAF 228 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcc---cHHHHHHHHHHHHhcCCcc
Confidence 4556666778888999988888876665543 3456677777777 7777777778888888864
No 220
>KOG0545|consensus
Probab=98.17 E-value=2.8e-05 Score=56.11 Aligned_cols=96 Identities=15% Similarity=0.081 Sum_probs=84.3
Q ss_pred HhhhhccCHHHHHHHHHHHHhc--------CcccH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH
Q psy12642 8 IGCFHFFRYEEALEHLETIIKI--------DETNT----------AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQE 69 (201)
Q Consensus 8 ~~~~~~~~~~~A~~~~~~~l~~--------~~~~~----------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 69 (201)
..+++.|+|.+|...|..++.. .|.++ ..+....+|+...|++-+++++....+...|++..
T Consensus 186 N~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvK 265 (329)
T KOG0545|consen 186 NRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVK 265 (329)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHH
Confidence 4588999999999999888753 35444 55677888999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHH
Q psy12642 70 TWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHL 103 (201)
Q Consensus 70 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 103 (201)
+++..|.++...=+..+|...|.+++.++|.-..
T Consensus 266 A~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 266 AYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 9999999999999999999999999999997544
No 221
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.16 E-value=4.3e-06 Score=41.56 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCccc
Q psy12642 102 HLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN 138 (201)
Q Consensus 102 ~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 138 (201)
+.+|+.+|.++...+ ++++|+..|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLG---DYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT----HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhC---CchHHHHHHHHHHHHCcCC
Confidence 357999999999999 9999999999999999974
No 222
>KOG1941|consensus
Probab=98.15 E-value=0.00033 Score=53.48 Aligned_cols=150 Identities=16% Similarity=0.126 Sum_probs=114.6
Q ss_pred HHHHhhhhccCHHHHHHHHHHHHhcCcc--c----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC----CCH------
Q psy12642 5 VYIIGCFHFFRYEEALEHLETIIKIDET--N----TAARKRKICILKAKNKIPEAIKELTEYLKKFM----TDQ------ 68 (201)
Q Consensus 5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p----~~~------ 68 (201)
....++...+.|+++++.|++++....+ + ..+...+|.+|....++++|..+..++..+.. ++.
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 3455677788999999999999986432 2 26778899999999999999999988877532 222
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcC------CCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc-----
Q psy12642 69 ETWQELCDLYLSEGDYAKAVFCMEELFLHH------PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK----- 137 (201)
Q Consensus 69 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~----- 137 (201)
.+.+.++..+..+|+...|.++.+++.++. +-.......+|.+|...| +.+.|..-|+++......
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~g---d~e~af~rYe~Am~~m~~~gdrm 283 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRG---DLERAFRRYEQAMGTMASLGDRM 283 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcc---cHhHHHHHHHHHHHHHhhhhhhH
Confidence 345668888999999999999999987653 233456788999999999 999999999998865432
Q ss_pred -cHHHHHHHHHHHHHhhhhhh
Q psy12642 138 -NIRALYGLALSCHQVLTSAK 157 (201)
Q Consensus 138 -~~~~~~~l~~~~~~~~~~~~ 157 (201)
...++.+.+.|.....-..+
T Consensus 284 gqv~al~g~Akc~~~~r~~~k 304 (518)
T KOG1941|consen 284 GQVEALDGAAKCLETLRLQNK 304 (518)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 35567777777765554444
No 223
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.13 E-value=1.2e-05 Score=39.83 Aligned_cols=34 Identities=15% Similarity=-0.080 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q psy12642 34 TAARKRKICILKAKNKIPEAIKELTEYLKKFMTD 67 (201)
Q Consensus 34 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~ 67 (201)
+.+++.+|.++...|++++|++.++++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3578899999999999999999999999999975
No 224
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=0.00056 Score=50.83 Aligned_cols=170 Identities=15% Similarity=0.098 Sum_probs=116.3
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q psy12642 19 ALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHH 98 (201)
Q Consensus 19 A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 98 (201)
-.+++++.+.. ....-+..+.-....|++.+|...+..++...|++..+...++.+|...|+.+.|...+...=...
T Consensus 122 lr~~ld~~~~~---~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~ 198 (304)
T COG3118 122 LRQFLDKVLPA---EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQA 198 (304)
T ss_pred HHHHHHHhcCh---HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccc
Confidence 34455554433 334445566677889999999999999999999999999999999999999999988877533222
Q ss_pred CCCHHHHHHHH--HHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhh----HHHHHHHhHH
Q psy12642 99 PHNHLLHQRYA--DILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAK----KKEISKQMMW 172 (201)
Q Consensus 99 ~~~~~~~~~la--~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~~ 172 (201)
..+ ......+ ..+.... ...+ ...+++.+..+|++..+-+.++..+...|+.+.|.... ++........
T Consensus 199 ~~~-~~~~l~a~i~ll~qaa---~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~ 273 (304)
T COG3118 199 QDK-AAHGLQAQIELLEQAA---ATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGE 273 (304)
T ss_pred hhh-HHHHHHHHHHHHHHHh---cCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcH
Confidence 221 1111112 2223333 2222 24556677889999999999999999999999996643 2333334455
Q ss_pred HHHHHHHHHHhhhcchHHHHHHHh
Q psy12642 173 VSKHLARQYEEQQGNTETLTELMS 196 (201)
Q Consensus 173 ~~~~l~~~y~~~~~~~~~~~~~~~ 196 (201)
+...+...+....+.+..+..+..
T Consensus 274 ~Rk~lle~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 274 ARKTLLELFEAFGPADPLVLAYRR 297 (304)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHH
Confidence 667777777777777775555443
No 225
>KOG0551|consensus
Probab=98.09 E-value=0.00031 Score=52.88 Aligned_cols=94 Identities=17% Similarity=0.089 Sum_probs=82.3
Q ss_pred HHhhhhccCHHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q psy12642 7 IIGCFHFFRYEEALEHLETIIKIDETN----TAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG 82 (201)
Q Consensus 7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 82 (201)
+..|++.++|..|+..|.+.+...-.+ ...|..++.+....|+|..|+....+++..+|.+..++..-+.|++..+
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe 167 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELE 167 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHH
Confidence 345888999999999999999976433 4667889999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhcCCC
Q psy12642 83 DYAKAVFCMEELFLHHPH 100 (201)
Q Consensus 83 ~~~~A~~~~~~al~~~~~ 100 (201)
.+.+|+.+.+..+.++..
T Consensus 168 ~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 168 RFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHHHHhhhhhhhHH
Confidence 999999999988555443
No 226
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.09 E-value=0.00026 Score=47.80 Aligned_cols=60 Identities=20% Similarity=0.239 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Q psy12642 70 TWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAI 132 (201)
Q Consensus 70 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al 132 (201)
+...++..+...|++++|+..+++++..+|.+...+..+..++...| +...|++.|++..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g---~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQG---RRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCc---CHHHHHHHHHHHH
Confidence 44556667777778888888888888888887777777777777777 7777777777654
No 227
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.09 E-value=0.00018 Score=48.63 Aligned_cols=87 Identities=23% Similarity=0.153 Sum_probs=69.2
Q ss_pred hhhccCHHHHHHHHHHHHhcCccc----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q psy12642 10 CFHFFRYEEALEHLETIIKIDETN----------------------TAARKRKICILKAKNKIPEAIKELTEYLKKFMTD 67 (201)
Q Consensus 10 ~~~~~~~~~A~~~~~~~l~~~~~~----------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~ 67 (201)
....++.+.++..+.+++...... ..+...++..+...|++++|+..+.+++..+|.+
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~ 95 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPYD 95 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC
Confidence 345678999999999999865111 1445566777888999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q psy12642 68 QETWQELCDLYLSEGDYAKAVFCMEELFL 96 (201)
Q Consensus 68 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 96 (201)
-.+|..+-.+|...|+...|+..|++...
T Consensus 96 E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 96 EEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999988753
No 228
>KOG1308|consensus
Probab=98.08 E-value=4.4e-06 Score=62.69 Aligned_cols=109 Identities=12% Similarity=-0.058 Sum_probs=73.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHH
Q psy12642 43 ILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIE 122 (201)
Q Consensus 43 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~ 122 (201)
-.+..|.++.|++.+..++.++|.....+...+.++++.++...|+..+..++.++|+....+-..|.+...+| +++
T Consensus 123 eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg---~~e 199 (377)
T KOG1308|consen 123 EALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLG---NWE 199 (377)
T ss_pred HHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhh---chH
Confidence 34456777777777777777777777777777777777777777777777777777777777777777777777 777
Q ss_pred HHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhh
Q psy12642 123 LAISHYLMAINLNEKNIRALYGLALSCHQVLTS 155 (201)
Q Consensus 123 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 155 (201)
+|...+..+.+++=+ ..+-..+..+.-+.+..
T Consensus 200 ~aa~dl~~a~kld~d-E~~~a~lKeV~p~a~ki 231 (377)
T KOG1308|consen 200 EAAHDLALACKLDYD-EANSATLKEVFPNAGKI 231 (377)
T ss_pred HHHHHHHHHHhcccc-HHHHHHHHHhccchhhh
Confidence 777777777776533 22223344444443333
No 229
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.06 E-value=0.00047 Score=48.14 Aligned_cols=98 Identities=14% Similarity=0.123 Sum_probs=72.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q psy12642 37 RKRKICILKAKNKIPEAIKELTEYLKKFMTD---QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILY 113 (201)
Q Consensus 37 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 113 (201)
...++..+...|++++|+..++.++....+. .-+-..++.+...+|.+++|+..+..... ..-.+......|.++.
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~-~~w~~~~~elrGDill 170 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE-ESWAAIVAELRGDILL 170 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc-ccHHHHHHHHhhhHHH
Confidence 3456777888899999999999888643332 33556688899999999999988765321 1122345677899999
Q ss_pred HcCCcccHHHHHHHHHHHHcCCccc
Q psy12642 114 TQGGLENIELAISHYLMAINLNEKN 138 (201)
Q Consensus 114 ~~~~~~~~~~A~~~~~~al~~~p~~ 138 (201)
..| +.++|+..|+++++.+++.
T Consensus 171 ~kg---~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 171 AKG---DKQEARAAYEKALESDASP 192 (207)
T ss_pred HcC---chHHHHHHHHHHHHccCCh
Confidence 999 9999999999999987553
No 230
>KOG2610|consensus
Probab=98.04 E-value=0.00048 Score=52.17 Aligned_cols=118 Identities=19% Similarity=0.077 Sum_probs=102.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-CCCC---HHHHHHHHHHHHHc
Q psy12642 40 KICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLH-HPHN---HLLHQRYADILYTQ 115 (201)
Q Consensus 40 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~---~~~~~~la~~~~~~ 115 (201)
.+.+.+..|++.+|...+.+.++..|.+.-++..--.+++.+|+.......+++.+-. +|+- ..+.-.++..+...
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~ 188 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC 188 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh
Confidence 3456677899999999999999999999988888888999999999999999999977 6655 34455667777888
Q ss_pred CCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642 116 GGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSA 160 (201)
Q Consensus 116 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 160 (201)
| -|++|.+.-.++++++|.+.-+...++.+....|+..++..
T Consensus 189 g---~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~e 230 (491)
T KOG2610|consen 189 G---IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKE 230 (491)
T ss_pred c---cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHH
Confidence 9 99999999999999999999999999999999999888854
No 231
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.99 E-value=0.0027 Score=49.37 Aligned_cols=125 Identities=11% Similarity=-0.045 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHh---cCCHHHHHHHHHH-HhhcCCCCHHHH
Q psy12642 34 TAARKRKICILKAKNKIPEAIKELTEYLKK----FMTDQETWQELCDLYLS---EGDYAKAVFCMEE-LFLHHPHNHLLH 105 (201)
Q Consensus 34 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~---~~~~~~A~~~~~~-al~~~~~~~~~~ 105 (201)
+.+...+-..|....+|+.-+...+..-.. .++.+.+.+..|.++-+ .|+.++|+..+.. +....+.++..+
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 355556666788888888888888776655 45567777888888888 8999999999988 445566788888
Q ss_pred HHHHHHHHHcC------CcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhh
Q psy12642 106 QRYADILYTQG------GLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCS 159 (201)
Q Consensus 106 ~~la~~~~~~~------~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~ 159 (201)
..+|.+|...- +....++|+.+|.++++.+|+... -.|++.+....|......
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~-GIN~AtLL~~~g~~~~~~ 279 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYS-GINAATLLMLAGHDFETS 279 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccc-hHHHHHHHHHcCCcccch
Confidence 88888876441 233578999999999999976433 356666666666554443
No 232
>KOG2396|consensus
Probab=97.99 E-value=0.00088 Score=53.13 Aligned_cols=92 Identities=16% Similarity=0.193 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHH
Q psy12642 51 PEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLM 130 (201)
Q Consensus 51 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~ 130 (201)
..-...|+.+...++.|+..|........+.+.+.+--..|.+++..+|+++..|..-|...+..+. +.+.|...|.+
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~--ni~saRalflr 165 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINL--NIESARALFLR 165 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhcc--chHHHHHHHHH
Confidence 3445678889999999999999998888888889999999999999999999999999999988872 49999999999
Q ss_pred HHcCCcccHHHHHH
Q psy12642 131 AINLNEKNIRALYG 144 (201)
Q Consensus 131 al~~~p~~~~~~~~ 144 (201)
+++.+|+++..|..
T Consensus 166 gLR~npdsp~Lw~e 179 (568)
T KOG2396|consen 166 GLRFNPDSPKLWKE 179 (568)
T ss_pred HhhcCCCChHHHHH
Confidence 99999999987654
No 233
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.99 E-value=0.0011 Score=52.59 Aligned_cols=132 Identities=14% Similarity=0.037 Sum_probs=88.6
Q ss_pred hccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---------------------C---
Q psy12642 12 HFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMT---------------------D--- 67 (201)
Q Consensus 12 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---------------------~--- 67 (201)
+..+...-++.-+++++.+|+.+.++..++.-. .....++.+.++++++.... +
T Consensus 180 RERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~ 257 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNV 257 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccch
Confidence 456788888888899999999888888776521 23345566666655542110 0
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcC-CcccHHHHH
Q psy12642 68 -QETWQELCDLYLSEGDYAKAVFCMEELFLHHPH--NHLLHQRYADILYTQGGLENIELAISHYLMAINL-NEKNIRALY 143 (201)
Q Consensus 68 -~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~ 143 (201)
..+...+|.+..+.|+.++|++.++..++..|. +..++.++..++...+ .|.++...+.+.=+. -|+.....|
T Consensus 258 ~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq---~Yad~q~lL~kYdDi~lpkSAti~Y 334 (539)
T PF04184_consen 258 LVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQ---AYADVQALLAKYDDISLPKSATICY 334 (539)
T ss_pred hhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcC---CHHHHHHHHHHhccccCCchHHHHH
Confidence 123455788888888888888888888877764 4557888888888888 888888888775332 244444444
Q ss_pred HHHHH
Q psy12642 144 GLALS 148 (201)
Q Consensus 144 ~l~~~ 148 (201)
.-+..
T Consensus 335 TaALL 339 (539)
T PF04184_consen 335 TAALL 339 (539)
T ss_pred HHHHH
Confidence 44443
No 234
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.97 E-value=1.7e-05 Score=39.28 Aligned_cols=30 Identities=27% Similarity=0.479 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q psy12642 70 TWQELCDLYLSEGDYAKAVFCMEELFLHHP 99 (201)
Q Consensus 70 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 99 (201)
+|+.+|.+|...|++++|+.+|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455555555555555555555555555555
No 235
>KOG1585|consensus
Probab=97.96 E-value=0.0031 Score=45.81 Aligned_cols=181 Identities=12% Similarity=0.038 Sum_probs=118.4
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcCcccH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CCCHHHHHHH
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKIDETNT------AARKRKICILKAKNKIPEAIKELTEYLKKF-----MTDQETWQEL 74 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~l 74 (201)
.+.++...++|++|...+.++.+-..++. .++-..+.+......+.++..+++++.... |+....-...
T Consensus 37 AAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleK 116 (308)
T KOG1585|consen 37 AAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEK 116 (308)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHH
Confidence 35678888999999999999986544332 344455666777888899999999988753 3333333333
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCC------HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHc------CCcccHHHH
Q psy12642 75 CDLYLSEGDYAKAVFCMEELFLHHPHN------HLLHQRYADILYTQGGLENIELAISHYLMAIN------LNEKNIRAL 142 (201)
Q Consensus 75 ~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~ 142 (201)
+--.....++++|+..|++++.+-..+ ...+-..+.++.... .+++|-..+.+-.. ..|..-..+
T Consensus 117 Aak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~---kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~ 193 (308)
T KOG1585|consen 117 AAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLE---KFTEAATAFLKEGVAADKCDAYNSQCKAY 193 (308)
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhH---HhhHHHHHHHHhhhHHHHHhhcccHHHHH
Confidence 444456778999999999988654322 234555677777777 88888777766432 234444566
Q ss_pred HHHHHHHHHhhhhhhhhhhhHHHH------HHHhHHHHHHHHHHHHhhhcchH
Q psy12642 143 YGLALSCHQVLTSAKCSAAKKKEI------SKQMMWVSKHLARQYEEQQGNTE 189 (201)
Q Consensus 143 ~~l~~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~~l~~~y~~~~~~~~ 189 (201)
.....+|....++..|........ ..-...+...|...|.++++..-
T Consensus 194 va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~gD~E~~ 246 (308)
T KOG1585|consen 194 VAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDEGDIEEI 246 (308)
T ss_pred HHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhccCCHHHH
Confidence 777777777778888765444321 12233456678888887665543
No 236
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.92 E-value=0.00057 Score=54.22 Aligned_cols=124 Identities=13% Similarity=0.021 Sum_probs=95.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-----------------
Q psy12642 37 RKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHP----------------- 99 (201)
Q Consensus 37 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~----------------- 99 (201)
-..+..-..+..+.+.-++...++++++|+.+++|..++.= ......+|...|+++++...
T Consensus 171 Aq~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e 248 (539)
T PF04184_consen 171 AQEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWE 248 (539)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhh
Confidence 33556667788899999999999999999999999887642 22335666666666654211
Q ss_pred ----CC----HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc--cHHHHHHHHHHHHHhhhhhhhhhhhHHH
Q psy12642 100 ----HN----HLLHQRYADILYTQGGLENIELAISHYLMAINLNEK--NIRALYGLALSCHQVLTSAKCSAAKKKE 165 (201)
Q Consensus 100 ----~~----~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 165 (201)
.+ ..+...+|.+..+.| +.++|++.++..++..|. +...+.+|..++..++.+.++..-..+.
T Consensus 249 ~~~~Rdt~~~~y~KrRLAmCarklG---r~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 249 AWHRRDTNVLVYAKRRLAMCARKLG---RLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hhhccccchhhhhHHHHHHHHHHhC---ChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 00 224578999999999 999999999999988875 5678999999999999999997765554
No 237
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.91 E-value=0.002 Score=50.06 Aligned_cols=158 Identities=14% Similarity=0.049 Sum_probs=107.4
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhc----CcccHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHHhcCCCHHHHHHHHHH
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKI----DETNTAARKRKICILKA---KNKIPEAIKELTE-YLKKFMTDQETWQELCDL 77 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~----~~~~~~~~~~~a~~~~~---~~~~~~A~~~~~~-~~~~~p~~~~~~~~l~~~ 77 (201)
+.+.|.+..+|+.-+.+.+.+-.. -++.+.+.+.+|.++.+ .|+.++|+..+.. .....+.+++.+..+|.+
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 556788999999999998887766 45677888899999999 8999999999998 555677889999999988
Q ss_pred HHh---------cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcc-cHHHHHHHH---HHHH-cC----CcccH
Q psy12642 78 YLS---------EGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLE-NIELAISHY---LMAI-NL----NEKNI 139 (201)
Q Consensus 78 ~~~---------~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~-~~~~A~~~~---~~al-~~----~p~~~ 139 (201)
|.. ....++|+.+|.++...+|+... =.+++.++...|... .-.+..+.- ...+ +. .-.+.
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~-GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dY 305 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYS-GINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDY 305 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHcCCccccc-hHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccH
Confidence 753 23478999999999999976433 344555555555211 111111111 1111 11 11233
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhHH
Q psy12642 140 RALYGLALSCHQVLTSAKCSAAKKK 164 (201)
Q Consensus 140 ~~~~~l~~~~~~~~~~~~a~~~~~~ 164 (201)
.....+..+..-.|+.+++....++
T Consensus 306 Wd~ATl~Ea~vL~~d~~ka~~a~e~ 330 (374)
T PF13281_consen 306 WDVATLLEASVLAGDYEKAIQAAEK 330 (374)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3445667777778888888664443
No 238
>KOG1308|consensus
Probab=97.90 E-value=1.3e-05 Score=60.18 Aligned_cols=94 Identities=9% Similarity=0.027 Sum_probs=82.1
Q ss_pred HHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHH
Q psy12642 7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAK 86 (201)
Q Consensus 7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 86 (201)
++..+..|.+++|++.+..++.++|.....+..++.++..+++...|++.+..++.++|+...-+-..|.....+|+|++
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHH
Confidence 45566788999999999999999999999999999999999999999999999999999988888888888999999999
Q ss_pred HHHHHHHHhhcCCC
Q psy12642 87 AVFCMEELFLHHPH 100 (201)
Q Consensus 87 A~~~~~~al~~~~~ 100 (201)
|...+..+.+++-+
T Consensus 201 aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 201 AAHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHHhcccc
Confidence 99998888776543
No 239
>KOG1586|consensus
Probab=97.89 E-value=0.0038 Score=45.05 Aligned_cols=90 Identities=18% Similarity=0.121 Sum_probs=57.6
Q ss_pred cCCHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHhc-CCHHHHHHHHHHHhhcCCCC------HHHHHHHHHHHH
Q psy12642 47 KNKIPEAIKELTEYLKKFMTDQET------WQELCDLYLSE-GDYAKAVFCMEELFLHHPHN------HLLHQRYADILY 113 (201)
Q Consensus 47 ~~~~~~A~~~~~~~~~~~p~~~~~------~~~l~~~~~~~-~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~ 113 (201)
..++.+|+.++++++++..+...+ +..+|.+|... .++++|+.+|+++-...... ...+...+....
T Consensus 86 k~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa 165 (288)
T KOG1586|consen 86 KVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAA 165 (288)
T ss_pred ccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHH
Confidence 347777777777777766544332 33567777654 77888888888776544322 224455555556
Q ss_pred HcCCcccHHHHHHHHHHHHcCCcccH
Q psy12642 114 TQGGLENIELAISHYLMAINLNEKNI 139 (201)
Q Consensus 114 ~~~~~~~~~~A~~~~~~al~~~p~~~ 139 (201)
..+ +|.+|++.|+++....-+++
T Consensus 166 ~le---qY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 166 QLE---QYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHH---HHHHHHHHHHHHHHHhccch
Confidence 667 88888888888776555443
No 240
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.80 E-value=0.00041 Score=48.45 Aligned_cols=97 Identities=14% Similarity=0.067 Sum_probs=75.6
Q ss_pred HHHHhhhhccCHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q psy12642 5 VYIIGCFHFFRYEEALEHLETIIKIDETN---TAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSE 81 (201)
Q Consensus 5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 81 (201)
-.+..+...+++++|+..++.++....+. .-+-.+++.+...+|.+++|+..+....... -.+......|.++...
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~k 172 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHHHc
Confidence 34566788999999999999998644332 3566789999999999999999887644311 1233455679999999
Q ss_pred CCHHHHHHHHHHHhhcCCCCH
Q psy12642 82 GDYAKAVFCMEELFLHHPHNH 102 (201)
Q Consensus 82 ~~~~~A~~~~~~al~~~~~~~ 102 (201)
|+-++|...|++++...++++
T Consensus 173 g~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 173 GDKQEARAAYEKALESDASPA 193 (207)
T ss_pred CchHHHHHHHHHHHHccCChH
Confidence 999999999999999885543
No 241
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.76 E-value=0.00076 Score=42.75 Aligned_cols=47 Identities=13% Similarity=0.079 Sum_probs=35.6
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCC
Q psy12642 86 KAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLN 135 (201)
Q Consensus 86 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~ 135 (201)
.|+++|.++..+.|..+..++.+|.-+.... .|++++.-.++++...
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~---~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVK---YYKKAVKKAKRGLSVT 108 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHH---HHHHHHHHHHHHhccc
Confidence 4677888888888888888888887666556 7888888777777643
No 242
>PRK10941 hypothetical protein; Provisional
Probab=97.75 E-value=0.00076 Score=50.25 Aligned_cols=63 Identities=11% Similarity=0.044 Sum_probs=33.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHH
Q psy12642 42 CILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLL 104 (201)
Q Consensus 42 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 104 (201)
.++...++++.|+.+.+..+...|+++.-+.-.|.+|.+.|.+..|...++..+...|+++.+
T Consensus 189 ~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 189 AALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 344455555555555555555555555555555555555555555555555555555555444
No 243
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.70 E-value=0.0043 Score=47.72 Aligned_cols=140 Identities=14% Similarity=0.044 Sum_probs=103.2
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHH
Q psy12642 21 EHLETIIKIDETNTAARKRKICILKAKNK------------IPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAV 88 (201)
Q Consensus 21 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~------------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~ 88 (201)
..+++.+..+|.+..+|..+...--..-. .+.-+.+++++++.+|++...+..+-.+..+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45788889999999999998875444322 356678899999999999999988888888888999999
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc------------------cHHHHHHHHHHHH
Q psy12642 89 FCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK------------------NIRALYGLALSCH 150 (201)
Q Consensus 89 ~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~------------------~~~~~~~l~~~~~ 150 (201)
.-+++++..+|+++..|..+-......-..-.++.....|.++++.-.. -...+..+.....
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~ 165 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLR 165 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999998877765544422112567777777776643211 1234455666667
Q ss_pred Hhhhhhhhhh
Q psy12642 151 QVLTSAKCSA 160 (201)
Q Consensus 151 ~~~~~~~a~~ 160 (201)
+.|-.+.|..
T Consensus 166 ~aG~~E~Ava 175 (321)
T PF08424_consen 166 QAGYTERAVA 175 (321)
T ss_pred HCCchHHHHH
Confidence 7777777755
No 244
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.68 E-value=0.0043 Score=48.06 Aligned_cols=120 Identities=14% Similarity=0.086 Sum_probs=62.8
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-CC-------
Q psy12642 32 TNTAARKRKICILKAKNKIPEAIKELTEYLKKFM----TDQETWQELCDLYLSEGDYAKAVFCMEELFLH-HP------- 99 (201)
Q Consensus 32 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~------- 99 (201)
.....+...+.+....|+++.|...+.++....+ ..+.+....+.+....|+..+|+..++..+.. ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 3344455555555555555555555555444321 12344444555555555555555555544440 00
Q ss_pred --------------------------CCHHHHHHHHHHHHHc------CCcccHHHHHHHHHHHHcCCcccHHHHHHHHH
Q psy12642 100 --------------------------HNHLLHQRYADILYTQ------GGLENIELAISHYLMAINLNEKNIRALYGLAL 147 (201)
Q Consensus 100 --------------------------~~~~~~~~la~~~~~~------~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 147 (201)
....++..+|...... + ..++++..|..+++.+|+...+|+.++.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSE---SSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccc---cHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 0012455555555555 4 6666666677666666666666666666
Q ss_pred HHHHhhh
Q psy12642 148 SCHQVLT 154 (201)
Q Consensus 148 ~~~~~~~ 154 (201)
.+...-+
T Consensus 301 ~~~~~~~ 307 (352)
T PF02259_consen 301 FNDKLLE 307 (352)
T ss_pred HHHHHHH
Confidence 6665543
No 245
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.68 E-value=9.4e-05 Score=36.16 Aligned_cols=30 Identities=27% Similarity=0.444 Sum_probs=13.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q psy12642 71 WQELCDLYLSEGDYAKAVFCMEELFLHHPH 100 (201)
Q Consensus 71 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 100 (201)
++.+|.++...|++++|+..|++++...|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 334444444444444444444444444443
No 246
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.67 E-value=0.00017 Score=35.58 Aligned_cols=32 Identities=16% Similarity=-0.020 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q psy12642 35 AARKRKICILKAKNKIPEAIKELTEYLKKFMT 66 (201)
Q Consensus 35 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~ 66 (201)
.+++.+|.++...|++++|+..|+++++.+|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46888999999999999999999999999885
No 247
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.66 E-value=0.016 Score=44.86 Aligned_cols=63 Identities=27% Similarity=0.452 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHc
Q psy12642 68 QETWQELCDLYLSEGDYAKAVFCMEELFLHHP----HNHLLHQRYADILYTQGGLENIELAISHYLMAIN 133 (201)
Q Consensus 68 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~ 133 (201)
...|..++.+..+.|.++-|...+.++....+ ..+.+.+..+..+...| +..+|+..++..+.
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g---~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQG---EQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcC---CHHHHHHHHHHHHH
Confidence 44555555555555555555555555554331 12344445555555555 55555555544444
No 248
>KOG4507|consensus
Probab=97.66 E-value=0.00021 Score=57.67 Aligned_cols=104 Identities=18% Similarity=0.093 Sum_probs=87.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHH
Q psy12642 44 LKAKNKIPEAIKELTEYLKKFMTDQ-ETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIE 122 (201)
Q Consensus 44 ~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~ 122 (201)
+...|+...|++++..++...|... .....++++....|-...|-..+.+++.+....|..++.+|..+.... +.+
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~---~i~ 693 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALK---NIS 693 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHh---hhH
Confidence 3456999999999999998888653 346678899999898899999999999998888889999999999999 999
Q ss_pred HHHHHHHHHHcCCcccHHHHHHHHHHHH
Q psy12642 123 LAISHYLMAINLNEKNIRALYGLALSCH 150 (201)
Q Consensus 123 ~A~~~~~~al~~~p~~~~~~~~l~~~~~ 150 (201)
.|++.|+++++++|+++.....|-.+-.
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999999998876655544433
No 249
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.63 E-value=0.00093 Score=42.36 Aligned_cols=92 Identities=16% Similarity=0.048 Sum_probs=74.2
Q ss_pred HHhhhhccCHHHHHHHHHHHHhcCcccH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhcCCCHHHHH
Q psy12642 7 IIGCFHFFRYEEALEHLETIIKIDETNT---AARKRKICILKAKNK-----------IPEAIKELTEYLKKFMTDQETWQ 72 (201)
Q Consensus 7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~~a~~~~~~~~-----------~~~A~~~~~~~~~~~p~~~~~~~ 72 (201)
+..++..|++-+|+++.+..+..++++. ..+...|.++..+.. ...+++.+.++..+.|..+..++
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~ 82 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLF 82 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHH
Confidence 4568899999999999999999887766 566677888765432 35678888999999999988888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcC
Q psy12642 73 ELCDLYLSEGDYAKAVFCMEELFLHH 98 (201)
Q Consensus 73 ~l~~~~~~~~~~~~A~~~~~~al~~~ 98 (201)
.+|.-+-....|++++.-.++++...
T Consensus 83 ~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 83 ELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 88887766777888888888888654
No 250
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.63 E-value=0.0083 Score=40.86 Aligned_cols=102 Identities=15% Similarity=-0.046 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q psy12642 35 AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYT 114 (201)
Q Consensus 35 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 114 (201)
..+.....+-...++.+++...+.....+.|..+.+-..-|.++...|+|.+|+..|+.+....|..+..--.++.|++.
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 45556667777888999999999998889999999999999999999999999999999998899999999999999998
Q ss_pred cCCcccHHHHHHHHHHHHcCCcccHHH
Q psy12642 115 QGGLENIELAISHYLMAINLNEKNIRA 141 (201)
Q Consensus 115 ~~~~~~~~~A~~~~~~al~~~p~~~~~ 141 (201)
.+ +.+- ..+-..+++..++ +.+
T Consensus 91 ~~---D~~W-r~~A~evle~~~d-~~a 112 (160)
T PF09613_consen 91 LG---DPSW-RRYADEVLESGAD-PDA 112 (160)
T ss_pred cC---ChHH-HHHHHHHHhcCCC-hHH
Confidence 88 5322 2233445555543 444
No 251
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.62 E-value=0.00046 Score=37.86 Aligned_cols=39 Identities=21% Similarity=0.111 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHH
Q psy12642 70 TWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRY 108 (201)
Q Consensus 70 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 108 (201)
..+.++..+++.|+|++|..+.+.+++++|+|..+....
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 344555556666666666666666666666655554433
No 252
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.62 E-value=0.00013 Score=36.64 Aligned_cols=25 Identities=32% Similarity=0.563 Sum_probs=14.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Q psy12642 71 WQELCDLYLSEGDYAKAVFCMEELF 95 (201)
Q Consensus 71 ~~~l~~~~~~~~~~~~A~~~~~~al 95 (201)
+..+|.+|..+|+|++|+.+|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666643
No 253
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.60 E-value=0.00018 Score=35.14 Aligned_cols=32 Identities=19% Similarity=0.151 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q psy12642 36 ARKRKICILKAKNKIPEAIKELTEYLKKFMTD 67 (201)
Q Consensus 36 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~ 67 (201)
+++.+|.++...|++++|+..++++++.+|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 67788999999999999999999999999874
No 254
>KOG0530|consensus
Probab=97.60 E-value=0.0033 Score=46.09 Aligned_cols=141 Identities=14% Similarity=0.063 Sum_probs=109.1
Q ss_pred hhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH-HHH
Q psy12642 11 FHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKN-KIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYA-KAV 88 (201)
Q Consensus 11 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~-~A~ 88 (201)
.+...-.+|+.....++..+|.+..+|..+-.++..++ +..+-++++.+.+..+|.+..+|...-.+....|++. .-+
T Consensus 54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rEL 133 (318)
T KOG0530|consen 54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFREL 133 (318)
T ss_pred hccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchH
Confidence 44567788999999999999999888888888777664 5677788999999999999999998888878888887 778
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHcCC-------------------------------------cccHHHHHHHHHHH
Q psy12642 89 FCMEELFLHHPHNHLLHQRYADILYTQGG-------------------------------------LENIELAISHYLMA 131 (201)
Q Consensus 89 ~~~~~al~~~~~~~~~~~~la~~~~~~~~-------------------------------------~~~~~~A~~~~~~a 131 (201)
+..+.++..+..|.-+|...--+...-+. ....+.-+.+..+.
T Consensus 134 ef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~ 213 (318)
T KOG0530|consen 134 EFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDK 213 (318)
T ss_pred HHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHH
Confidence 88888888888777666554444333330 01355667777888
Q ss_pred HcCCcccHHHHHHHHHHHHH
Q psy12642 132 INLNEKNIRALYGLALSCHQ 151 (201)
Q Consensus 132 l~~~p~~~~~~~~l~~~~~~ 151 (201)
|...|++..+|..|.-++..
T Consensus 214 I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 214 ILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred HHhCCCCccHHHHHHHHHHh
Confidence 88888999999998888875
No 255
>KOG2396|consensus
Probab=97.59 E-value=0.0021 Score=51.04 Aligned_cols=92 Identities=13% Similarity=0.064 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHh
Q psy12642 17 EEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD-YAKAVFCMEELF 95 (201)
Q Consensus 17 ~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al 95 (201)
.+-...|+.++...+.++..|..........+.+.+--.+|.+++..+|++++.|..-+.-.+.-+. .+.|...|.+++
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 3456678888888888898888887777777778888999999999999999999988877776665 899999999999
Q ss_pred hcCCCCHHHHHHH
Q psy12642 96 LHHPHNHLLHQRY 108 (201)
Q Consensus 96 ~~~~~~~~~~~~l 108 (201)
..+|+++..|..+
T Consensus 168 R~npdsp~Lw~ey 180 (568)
T KOG2396|consen 168 RFNPDSPKLWKEY 180 (568)
T ss_pred hcCCCChHHHHHH
Confidence 9999998876543
No 256
>KOG2047|consensus
Probab=97.58 E-value=0.025 Score=46.64 Aligned_cols=129 Identities=14% Similarity=0.073 Sum_probs=88.5
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcc----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------------
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDET----NTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD------------ 67 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------------ 67 (201)
+.++.-|...|+.+.|...|+++.+..-. -..+|..-|..-+...+++.|+++++.+... |..
T Consensus 391 ~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pv 469 (835)
T KOG2047|consen 391 VEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPV 469 (835)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcH
Confidence 44556677788888888888888775522 2466666677777777788888877776542 221
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCc
Q psy12642 68 -------QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNE 136 (201)
Q Consensus 68 -------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p 136 (201)
..+|..++......|-++.....|++.+.+.--.|....++|..+.... -++++.+.|++.+.+.|
T Consensus 470 Q~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~---yfeesFk~YErgI~LFk 542 (835)
T KOG2047|consen 470 QARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHK---YFEESFKAYERGISLFK 542 (835)
T ss_pred HHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhH---HHHHHHHHHHcCCccCC
Confidence 3356666777677777777777777777776666777777777776666 67777777777776654
No 257
>PRK10941 hypothetical protein; Provisional
Probab=97.58 E-value=0.0017 Score=48.43 Aligned_cols=74 Identities=14% Similarity=0.023 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHH
Q psy12642 70 TWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLA 146 (201)
Q Consensus 70 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 146 (201)
....+-.+|...++++.|+.+.+..+.+.|+++.-+...|.++...+ .+..|+.-++..++..|+++.+-.-..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~---c~~~A~~DL~~fl~~~P~dp~a~~ik~ 256 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLD---CEHVALSDLSYFVEQCPEDPISEMIRA 256 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CcHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 34456678899999999999999999999999999999999999999 999999999999999999887654433
No 258
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.57 E-value=0.019 Score=43.38 Aligned_cols=137 Identities=15% Similarity=-0.038 Sum_probs=99.3
Q ss_pred hhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcC--
Q psy12642 10 CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKA----KNKIPEAIKELTEYLKKFMTD-QETWQELCDLYLSEG-- 82 (201)
Q Consensus 10 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~-- 82 (201)
.....+..+|..+|..+. ...++.+.+.+|.++.. ..+..+|..+++++....-.. ......+|.+|..-+
T Consensus 87 ~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~ 164 (292)
T COG0790 87 KGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQA 164 (292)
T ss_pred cCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhh
Confidence 344567888999998554 45567777888888887 448899999999988864333 234777787776542
Q ss_pred -----CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHc-CCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhh
Q psy12642 83 -----DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQ-GGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL 153 (201)
Q Consensus 83 -----~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 153 (201)
+...|...|.++-... ++.+.+.+|.+|..- |-..++.+|..+|.++.+... ..+.+.++ ++...|
T Consensus 165 ~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 165 LAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred hcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 2337888888877655 777888888777554 234589999999999998876 77788888 555555
No 259
>KOG3824|consensus
Probab=97.54 E-value=0.00054 Score=51.28 Aligned_cols=70 Identities=20% Similarity=0.179 Sum_probs=56.6
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHH
Q psy12642 76 DLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALS 148 (201)
Q Consensus 76 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 148 (201)
.-..+.|+.++|...|+.++.+.|+++.++..+|.+....+ +.-+|-.+|-+++.++|.+.+++.+....
T Consensus 124 ~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~---~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 124 GRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHN---EIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhh---hhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 33456788888888888888888888888888888877777 88888888888888888888887766543
No 260
>KOG1550|consensus
Probab=97.51 E-value=0.0082 Score=49.70 Aligned_cols=143 Identities=19% Similarity=-0.007 Sum_probs=105.7
Q ss_pred hhhccCHHHHHHHHHHHHhc-----CcccHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q psy12642 10 CFHFFRYEEALEHLETIIKI-----DETNTAARKRKICILKAKN-----KIPEAIKELTEYLKKFMTDQETWQELCDLYL 79 (201)
Q Consensus 10 ~~~~~~~~~A~~~~~~~l~~-----~~~~~~~~~~~a~~~~~~~-----~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 79 (201)
.-...|.+.|+.+|+.+... .-.++.+...+|.+|.... +.+.|..++.++-... ++.+.+.+|.++.
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~ 336 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYE 336 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHH
Confidence 44678999999999999771 1115567778999998853 6788999999888754 5678888999988
Q ss_pred hcC---CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcC-CcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHh-hh
Q psy12642 80 SEG---DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQG-GLENIELAISHYLMAINLNEKNIRALYGLALSCHQV-LT 154 (201)
Q Consensus 80 ~~~---~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-~~ 154 (201)
... ++..|..+|..+.. ..+..+.+.++.++..-. -..+...|..+|.++.+.+ ++.+.+.++.++..- +.
T Consensus 337 ~g~~~~d~~~A~~yy~~Aa~--~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~ 412 (552)
T KOG1550|consen 337 TGTKERDYRRAFEYYSLAAK--AGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGR 412 (552)
T ss_pred cCCccccHHHHHHHHHHHHH--cCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHcccc
Confidence 655 67899999998874 456778888888876542 2337899999999999987 455556666555543 44
Q ss_pred hhhh
Q psy12642 155 SAKC 158 (201)
Q Consensus 155 ~~~a 158 (201)
...+
T Consensus 413 ~~~~ 416 (552)
T KOG1550|consen 413 YDTA 416 (552)
T ss_pred ccHH
Confidence 4333
No 261
>KOG2047|consensus
Probab=97.51 E-value=0.039 Score=45.60 Aligned_cols=135 Identities=7% Similarity=-0.018 Sum_probs=99.1
Q ss_pred hHHHHHhhhhccCHHHHHHHHHHHHhcCcc------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q psy12642 3 PIVYIIGCFHFFRYEEALEHLETIIKIDET------------------NTAARKRKICILKAKNKIPEAIKELTEYLKKF 64 (201)
Q Consensus 3 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 64 (201)
+..++..=.+..+++.|+.+.+.+...-.. +..+|..++...-..|-++.....|++.+++-
T Consensus 428 w~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLr 507 (835)
T KOG2047|consen 428 WCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLR 507 (835)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh
Confidence 444555556778899999999888753211 22566677777777899999999999999988
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC--CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc
Q psy12642 65 MTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHP--HNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK 137 (201)
Q Consensus 65 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 137 (201)
--.|....+.|.++....-+++|.+.|++.+.+.+ .-...|..+-.-..+.-+....+.|...|+++++..|.
T Consensus 508 iaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp 582 (835)
T KOG2047|consen 508 IATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPP 582 (835)
T ss_pred cCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Confidence 88888888889888888889999999999998865 33344443322222211112789999999999999884
No 262
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.47 E-value=0.0034 Score=38.66 Aligned_cols=44 Identities=27% Similarity=0.296 Sum_probs=19.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q psy12642 56 ELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHP 99 (201)
Q Consensus 56 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 99 (201)
.+++.+..+|+|..+.+.++..+...|++++|+..+-.++..++
T Consensus 10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr 53 (90)
T PF14561_consen 10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDR 53 (90)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 34444444444444444444444444444444444444444443
No 263
>KOG3824|consensus
Probab=97.44 E-value=0.00091 Score=50.12 Aligned_cols=72 Identities=14% Similarity=0.080 Sum_probs=63.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q psy12642 40 KICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADI 111 (201)
Q Consensus 40 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 111 (201)
.+.-....|+.++|...|+.++.+.|++++++..+|.+....++.-+|-.+|-+++..+|.|..++.+.+..
T Consensus 122 ~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 122 AAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 344456789999999999999999999999999999999888999999999999999999999888776654
No 264
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.44 E-value=0.036 Score=43.36 Aligned_cols=128 Identities=10% Similarity=0.064 Sum_probs=94.4
Q ss_pred HHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------c------------------CCCHH---HHHHHH
Q psy12642 25 TIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKK--------F------------------MTDQE---TWQELC 75 (201)
Q Consensus 25 ~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~------------------p~~~~---~~~~l~ 75 (201)
..+..+|.+..++..++.++..+|+...|.+.+++++-. + +.|.. +.+...
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 445678999999999999999999999999999987531 1 11212 334455
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHH-HHcCCcccHHHHHHHHHHHHcCCc-c----cHHHHHHHHHH
Q psy12642 76 DLYLSEGDYAKAVFCMEELFLHHPH-NHLLHQRYADIL-YTQGGLENIELAISHYLMAINLNE-K----NIRALYGLALS 148 (201)
Q Consensus 76 ~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~-~~~~~~~~~~~A~~~~~~al~~~p-~----~~~~~~~l~~~ 148 (201)
....+.|-+..|.++.+-.+.++|. ||......-..+ .+.+ +++--++.++....... + -|..-+.++.+
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~---~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA 187 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSR---QYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALA 187 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcC---CHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHH
Confidence 6778899999999999999999998 887655554444 4556 78877777776554211 1 23456788899
Q ss_pred HHHhhhh
Q psy12642 149 CHQVLTS 155 (201)
Q Consensus 149 ~~~~~~~ 155 (201)
+...++.
T Consensus 188 ~~~l~~~ 194 (360)
T PF04910_consen 188 YFRLEKE 194 (360)
T ss_pred HHHhcCc
Confidence 9998887
No 265
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.42 E-value=0.0047 Score=38.04 Aligned_cols=67 Identities=16% Similarity=0.123 Sum_probs=54.4
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCccc--HHHHHHHHHHHHHhhhhh
Q psy12642 87 AVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN--IRALYGLALSCHQVLTSA 156 (201)
Q Consensus 87 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~ 156 (201)
.+..+++.+..+|+|+...+.+|..+...| ++++|++.+..+++.+++. ..+...+..++..+|...
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g---~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAG---DYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT----HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 466788999999999999999999999999 9999999999999999864 667777888888888644
No 266
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.40 E-value=0.039 Score=43.02 Aligned_cols=147 Identities=13% Similarity=-0.049 Sum_probs=80.5
Q ss_pred hhccCHHHHHHHHHHHHhcCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHH
Q psy12642 11 FHFFRYEEALEHLETIIKIDETN-TAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVF 89 (201)
Q Consensus 11 ~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 89 (201)
.-.|+++.|..-|+.++. +|.. .--+..+-.-....|+.+.|+.+.+.+-...|.-+.++...-...+..|+|+.|++
T Consensus 131 l~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~Alk 209 (531)
T COG3898 131 LLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALK 209 (531)
T ss_pred HhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHH
Confidence 345778888877777763 3322 11111222222346777777777777777777777777766666677777777777
Q ss_pred HHHHHhhc---CCCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642 90 CMEELFLH---HPHNHL---LHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSA 160 (201)
Q Consensus 90 ~~~~al~~---~~~~~~---~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 160 (201)
........ .++-.. +-..-+......+. +...|...-.++.++.|+...+-..-+..+.+.|+..|+..
T Consensus 210 Lvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda--dp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 210 LVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA--DPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhh
Confidence 76554432 222111 11111111111111 45556666666666666665555556666666666666544
No 267
>KOG2471|consensus
Probab=97.36 E-value=0.00067 Score=53.78 Aligned_cols=106 Identities=15% Similarity=0.058 Sum_probs=83.9
Q ss_pred hhhccCHHHHHHHHHHHH-hcCcc--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------cC------
Q psy12642 10 CFHFFRYEEALEHLETII-KIDET--------NTAARKRKICILKAKNKIPEAIKELTEYLKK---------FM------ 65 (201)
Q Consensus 10 ~~~~~~~~~A~~~~~~~l-~~~~~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---------~p------ 65 (201)
.+..|+|.+|.+.+...= ...|. ....|..+|.+++..|.+..+..+|.++++. .|
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 445689999988765431 12222 2345678999999999999999999999851 11
Q ss_pred ---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHc
Q psy12642 66 ---TDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQ 115 (201)
Q Consensus 66 ---~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 115 (201)
...++.+..|..|...|+.-.|.++|.+++...-.+|..|.+++++....
T Consensus 330 s~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 330 SQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 23567889999999999999999999999999999999999999987654
No 268
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.36 E-value=0.045 Score=42.70 Aligned_cols=124 Identities=15% Similarity=-0.067 Sum_probs=71.5
Q ss_pred hhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---cCCCH---HHHHHHHHHH-HhcCC
Q psy12642 11 FHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKK---FMTDQ---ETWQELCDLY-LSEGD 83 (201)
Q Consensus 11 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~---~~~~~l~~~~-~~~~~ 83 (201)
...|+.+.|..+-+.+-..-|.-++++...-...+..|+++.|++........ .++-. .+-..-+... .-..+
T Consensus 165 qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 165 QRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence 35677777777777777777777777777777777778888777777654332 11111 0111111111 11234
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc
Q psy12642 84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK 137 (201)
Q Consensus 84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 137 (201)
...|...-.+++++.|+-...-..-+..++..| +..++-..++.+.+..|.
T Consensus 245 p~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~---~~rKg~~ilE~aWK~ePH 295 (531)
T COG3898 245 PASARDDALEANKLAPDLVPAAVVAARALFRDG---NLRKGSKILETAWKAEPH 295 (531)
T ss_pred hHHHHHHHHHHhhcCCccchHHHHHHHHHHhcc---chhhhhhHHHHHHhcCCC
Confidence 555555666666666666555555566666666 555555555555555543
No 269
>KOG3364|consensus
Probab=97.36 E-value=0.0086 Score=39.43 Aligned_cols=73 Identities=18% Similarity=0.159 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHHH-hcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHH
Q psy12642 35 AARKRKICILKAKN---KIPEAIKELTEYLK-KFMTD-QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQR 107 (201)
Q Consensus 35 ~~~~~~a~~~~~~~---~~~~A~~~~~~~~~-~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 107 (201)
...+.++.++.... +.++.+.+++..++ ..|.. -+..+.++..+++.++|++++.+.+..+...|+|..+...
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 44555555555443 34555666666664 33332 3455556666666666666666666666666666655433
No 270
>KOG1585|consensus
Probab=97.34 E-value=0.019 Score=41.88 Aligned_cols=145 Identities=11% Similarity=0.030 Sum_probs=96.6
Q ss_pred hhhccCHHHHHHHHHHHHhcC-----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHH
Q psy12642 10 CFHFFRYEEALEHLETIIKID-----ETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD------QETWQELCDLY 78 (201)
Q Consensus 10 ~~~~~~~~~A~~~~~~~l~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~ 78 (201)
......+.++..+++++.... |+....-...+.-..+..++++|+.+|++++.....+ .+.+...+.++
T Consensus 81 ake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~l 160 (308)
T KOG1585|consen 81 AKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVL 160 (308)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHh
Confidence 445667888888888887653 4433334444555667788999999999988765433 34566678889
Q ss_pred HhcCCHHHHHHHHHHHhh----cCCCCHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHcCC----cccHHHHHHHHHH
Q psy12642 79 LSEGDYAKAVFCMEELFL----HHPHNHL--LHQRYADILYTQGGLENIELAISHYLMAINLN----EKNIRALYGLALS 148 (201)
Q Consensus 79 ~~~~~~~~A~~~~~~al~----~~~~~~~--~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~l~~~ 148 (201)
.+.+.+.+|-..+.+-.. .+..+.. .+.....++...+ +|..|..+++...++. |++.++.-+|...
T Consensus 161 Vrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~---Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a 237 (308)
T KOG1585|consen 161 VRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAH---DYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA 237 (308)
T ss_pred hhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHH---HHHHHHHHhcchhcCccccChHHHHHHHHHHHH
Confidence 999999999888766542 2333333 3344444555667 8999999999977654 5567777777766
Q ss_pred HHHhhhhhhh
Q psy12642 149 CHQVLTSAKC 158 (201)
Q Consensus 149 ~~~~~~~~~a 158 (201)
|.. |+.+..
T Consensus 238 yd~-gD~E~~ 246 (308)
T KOG1585|consen 238 YDE-GDIEEI 246 (308)
T ss_pred hcc-CCHHHH
Confidence 643 443333
No 271
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.33 E-value=0.002 Score=35.38 Aligned_cols=46 Identities=17% Similarity=-0.063 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH
Q psy12642 103 LLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 151 (201)
Q Consensus 103 ~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 151 (201)
..++.+|..+++.| +|++|.++.+.+++..|++..+......+-.+
T Consensus 2 d~lY~lAig~ykl~---~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~ 47 (53)
T PF14853_consen 2 DCLYYLAIGHYKLG---EYEKARRYCDALLEIEPDNRQAQSLKELIEDK 47 (53)
T ss_dssp HHHHHHHHHHHHTT----HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhh---hHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Confidence 35788899999999 99999999999999999999886655555443
No 272
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.33 E-value=0.00045 Score=32.85 Aligned_cols=31 Identities=29% Similarity=0.441 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q psy12642 70 TWQELCDLYLSEGDYAKAVFCMEELFLHHPH 100 (201)
Q Consensus 70 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 100 (201)
++..+|.++...|++++|+.++++++..+|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3445555555555555555555555555543
No 273
>KOG4507|consensus
Probab=97.33 E-value=0.013 Score=47.91 Aligned_cols=121 Identities=10% Similarity=-0.001 Sum_probs=95.8
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q psy12642 21 EHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ--ETWQELCDLYLSEGDYAKAVFCMEELFLHH 98 (201)
Q Consensus 21 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~--~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 98 (201)
......++.+|.+...+..-+..+...|+..+|+.++..++-..|... -+...+|.++.+.|.-.+|--.+-.|+...
T Consensus 200 ~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA 279 (886)
T KOG4507|consen 200 HLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDA 279 (886)
T ss_pred HHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCC
Confidence 355666777787776665555555567999999999999998776542 356678999999999999998888888777
Q ss_pred CCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHH
Q psy12642 99 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYG 144 (201)
Q Consensus 99 ~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 144 (201)
|.-...++.++.++...+ ++...+..|..+.+.+|....+...
T Consensus 280 ~~~t~n~y~l~~i~aml~---~~N~S~~~ydha~k~~p~f~q~~~q 322 (886)
T KOG4507|consen 280 DFFTSNYYTLGNIYAMLG---EYNHSVLCYDHALQARPGFEQAIKQ 322 (886)
T ss_pred ccccccceeHHHHHHHHh---hhhhhhhhhhhhhccCcchhHHHHH
Confidence 765566889999999999 9999999999999999975544433
No 274
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=97.30 E-value=0.00046 Score=51.67 Aligned_cols=84 Identities=21% Similarity=0.305 Sum_probs=71.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHH-HHHHHHHcCCcccHHHHHHHHHHHHcCCc
Q psy12642 58 TEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQR-YADILYTQGGLENIELAISHYLMAINLNE 136 (201)
Q Consensus 58 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-la~~~~~~~~~~~~~~A~~~~~~al~~~p 136 (201)
.++-...|+|+..|...+..-.+.|-|.+--..|.++++.+|.|+..|.. -+.-+...+ +++.+...|.++++.+|
T Consensus 97 ~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~a---ni~s~Ra~f~~glR~N~ 173 (435)
T COG5191 97 YRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIA---NIESSRAMFLKGLRMNS 173 (435)
T ss_pred ehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhc---cHHHHHHHHHhhhccCC
Confidence 33445678899999998888888889999999999999999999999877 455566778 99999999999999999
Q ss_pred ccHHHHHH
Q psy12642 137 KNIRALYG 144 (201)
Q Consensus 137 ~~~~~~~~ 144 (201)
++|..|+.
T Consensus 174 ~~p~iw~e 181 (435)
T COG5191 174 RSPRIWIE 181 (435)
T ss_pred CCchHHHH
Confidence 99987754
No 275
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.27 E-value=0.011 Score=39.61 Aligned_cols=81 Identities=15% Similarity=-0.036 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHc
Q psy12642 36 ARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQ 115 (201)
Q Consensus 36 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 115 (201)
.+......-...++.+++...+....-+.|+.+.+-..-|.++...|+|.+|+..|+......+..+...-.++.|++.+
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al 91 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK 91 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence 34444555556889999999998888889999988888899999999999999999999888888888888889999988
Q ss_pred C
Q psy12642 116 G 116 (201)
Q Consensus 116 ~ 116 (201)
+
T Consensus 92 ~ 92 (153)
T TIGR02561 92 G 92 (153)
T ss_pred C
Confidence 8
No 276
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=97.25 E-value=0.0031 Score=50.20 Aligned_cols=132 Identities=9% Similarity=-0.006 Sum_probs=105.4
Q ss_pred HhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHH
Q psy12642 8 IGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKA 87 (201)
Q Consensus 8 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A 87 (201)
..-...|+.-.|-+-+..++...|.+|......+.++..+|+|+.+...+..+-..-.....+...+-......|+++.|
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence 34456789999999999999999999999999999999999999999888766554444444555555667789999999
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHH
Q psy12642 88 VFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRAL 142 (201)
Q Consensus 88 ~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 142 (201)
...-+-.+...-+++....--+......+ -++++..++++.+.++|.....|
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~---~~d~~~~~wk~~~~~~~~~~~g~ 428 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQ---LFDKSYHYWKRVLLLNPETQSGW 428 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHh---HHHHHHHHHHHHhccCChhcccc
Confidence 99988888777777777766666667778 89999999999999998644333
No 277
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.23 E-value=0.026 Score=43.42 Aligned_cols=117 Identities=18% Similarity=0.105 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh---cCCHHHHHHHHH
Q psy12642 16 YEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLS---EGDYAKAVFCME 92 (201)
Q Consensus 16 ~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---~~~~~~A~~~~~ 92 (201)
.+.-+.+|++|++.+|.+...+..+..+.....+.++....+++++..+|+++..|...-..... .-.++.....|.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999876544333 235778888887
Q ss_pred HHhhcCC----C--------------CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCC
Q psy12642 93 ELFLHHP----H--------------NHLLHQRYADILYTQGGLENIELAISHYLMAINLN 135 (201)
Q Consensus 93 ~al~~~~----~--------------~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~ 135 (201)
+++..-. . -..++..+.......| ..+.|+..++-.++.+
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG---~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAG---YTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCC---chHHHHHHHHHHHHHH
Confidence 7774311 1 0124566677778889 9999999999999876
No 278
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.21 E-value=0.0012 Score=33.04 Aligned_cols=27 Identities=19% Similarity=0.117 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy12642 36 ARKRKICILKAKNKIPEAIKELTEYLK 62 (201)
Q Consensus 36 ~~~~~a~~~~~~~~~~~A~~~~~~~~~ 62 (201)
++..+|.+|...|++++|+.+|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467889999999999999999999554
No 279
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.19 E-value=0.017 Score=39.41 Aligned_cols=83 Identities=17% Similarity=-0.013 Sum_probs=73.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Q psy12642 70 TWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSC 149 (201)
Q Consensus 70 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 149 (201)
....+...-...++.+++...+...-.+.|..+..-..-|.++...| ++.+|+..|+.+....|..+.+-..++.|+
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~---~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRG---DWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhC---CHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 34445555667889999999999999999999999999999999999 999999999999999999998888899999
Q ss_pred HHhhhh
Q psy12642 150 HQVLTS 155 (201)
Q Consensus 150 ~~~~~~ 155 (201)
..+++.
T Consensus 89 ~~~~D~ 94 (160)
T PF09613_consen 89 YALGDP 94 (160)
T ss_pred HHcCCh
Confidence 888864
No 280
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.12 E-value=0.044 Score=37.96 Aligned_cols=143 Identities=17% Similarity=0.162 Sum_probs=104.1
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH-----HHHHHH
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETN--TAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQET-----WQELCD 76 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~ 76 (201)
+..++.+...+..++|+.-|..+-+..... .-+.++.+.+....|+...|+..|.++-...| .|.. ...-+.
T Consensus 62 flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~-~P~~~rd~ARlraa~ 140 (221)
T COG4649 62 FLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS-IPQIGRDLARLRAAY 140 (221)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC-CcchhhHHHHHHHHH
Confidence 345667778889999999998877655322 35567778889999999999999998766443 2222 333456
Q ss_pred HHHhcCCHHHHHHHHHHHh-hcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH
Q psy12642 77 LYLSEGDYAKAVFCMEELF-LHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 151 (201)
Q Consensus 77 ~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 151 (201)
++...|.|+.-....+.+- ..+|.-..+...+|...++.| ++.+|..+|.+... +...|+...+.+++...
T Consensus 141 lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kag---d~a~A~~~F~qia~-Da~aprnirqRAq~mld 212 (221)
T COG4649 141 LLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAG---DFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLD 212 (221)
T ss_pred HHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhcc---chHHHHHHHHHHHc-cccCcHHHHHHHHHHHH
Confidence 6778999998877766543 234455567888999999999 99999999998776 55556666666665544
No 281
>KOG0530|consensus
Probab=97.08 E-value=0.011 Score=43.50 Aligned_cols=140 Identities=15% Similarity=0.091 Sum_probs=85.5
Q ss_pred cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHH-
Q psy12642 14 FRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIP-EAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCM- 91 (201)
Q Consensus 14 ~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~-~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~- 91 (201)
.+..+-+++++.+++.+|.+..+|..+-.+....|++. .-+++.+..+..+..+.-+|...--+...-+.|+.-+.+.
T Consensus 92 ~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~ 171 (318)
T KOG0530|consen 92 SDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYAD 171 (318)
T ss_pred HHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHH
Confidence 34566677888888888888888887777777777776 6677777777777777666665554544445455444444
Q ss_pred ---------------------------------------HHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Q psy12642 92 ---------------------------------------EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAI 132 (201)
Q Consensus 92 ---------------------------------------~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al 132 (201)
.+.|...|+|..+|..+..++....+.....+........+
T Consensus 172 ~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~ 251 (318)
T KOG0530|consen 172 ELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLY 251 (318)
T ss_pred HHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHh
Confidence 44445556666666666665554231222455555555554
Q ss_pred -cCCcccHHHHHHHHHHHHHhh
Q psy12642 133 -NLNEKNIRALYGLALSCHQVL 153 (201)
Q Consensus 133 -~~~p~~~~~~~~l~~~~~~~~ 153 (201)
+.....|..+.-+...|...+
T Consensus 252 ~~~~~~sP~lla~l~d~~~e~~ 273 (318)
T KOG0530|consen 252 LQLPKRSPFLLAFLLDLYAEDA 273 (318)
T ss_pred hccCCCChhHHHHHHHHHHHHH
Confidence 333345556666666664433
No 282
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.06 E-value=0.0013 Score=47.20 Aligned_cols=57 Identities=16% Similarity=-0.027 Sum_probs=27.5
Q ss_pred hhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q psy12642 11 FHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD 67 (201)
Q Consensus 11 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~ 67 (201)
.+.++.+-|.+.|.++++.-|.....|+++|......|+++.|...|++.++++|.+
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 344444444444444444444444444444444444444444444444444444443
No 283
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.03 E-value=0.12 Score=41.22 Aligned_cols=48 Identities=17% Similarity=0.088 Sum_probs=28.1
Q ss_pred HHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642 109 ADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSA 160 (201)
Q Consensus 109 a~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 160 (201)
|+.++..| +|.++.-+-.=..++.| .+.++..+|.|.....++.+|..
T Consensus 469 AEyLysqg---ey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~ 516 (549)
T PF07079_consen 469 AEYLYSQG---EYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWE 516 (549)
T ss_pred HHHHHhcc---cHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHH
Confidence 33445556 66666655555555666 46666666666666666666644
No 284
>KOG4814|consensus
Probab=96.99 E-value=0.015 Score=47.80 Aligned_cols=96 Identities=16% Similarity=0.026 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHH
Q psy12642 36 ARKRKICILKAKNKIPEAIKELTEYLKKFMTD------QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYA 109 (201)
Q Consensus 36 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la 109 (201)
++.+.|.-.++..+|..++++|...+...|.| ....+.++.||....+.+.|++++++|-+.+|.++..-+.+-
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 34455667788899999999999999887766 446777899999999999999999999999999999888888
Q ss_pred HHHHHcCCcccHHHHHHHHHHHHcC
Q psy12642 110 DILYTQGGLENIELAISHYLMAINL 134 (201)
Q Consensus 110 ~~~~~~~~~~~~~~A~~~~~~al~~ 134 (201)
.+....+ .-++|+.+.......
T Consensus 436 ~~~~~E~---~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 436 QSFLAED---KSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHhc---chHHHHHHHHHHHhh
Confidence 8878888 788888877765543
No 285
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.92 E-value=0.002 Score=46.33 Aligned_cols=61 Identities=18% Similarity=0.234 Sum_probs=56.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHH
Q psy12642 43 ILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHL 103 (201)
Q Consensus 43 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 103 (201)
.....++.+.+.+.+++++.+.|.....|+.+|....+.|+++.|...|++.++++|.+..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 4556789999999999999999999999999999999999999999999999999998754
No 286
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.88 E-value=0.0021 Score=30.32 Aligned_cols=32 Identities=16% Similarity=0.215 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc
Q psy12642 103 LLHQRYADILYTQGGLENIELAISHYLMAINLNEK 137 (201)
Q Consensus 103 ~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 137 (201)
..+..+|.++...+ +++.|+..|+++++.+|+
T Consensus 2 ~~~~~~a~~~~~~~---~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLG---DYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHh---hHHHHHHHHHHHHccCCC
Confidence 46788999999999 999999999999998886
No 287
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.88 E-value=0.028 Score=40.57 Aligned_cols=85 Identities=12% Similarity=0.041 Sum_probs=43.1
Q ss_pred ccCHHHHHHHHHHHHhcC-----cc--cHHHHHHHHHHHHHcCCHHHHH-------HHHHHHHHhc--CCC----HHHHH
Q psy12642 13 FFRYEEALEHLETIIKID-----ET--NTAARKRKICILKAKNKIPEAI-------KELTEYLKKF--MTD----QETWQ 72 (201)
Q Consensus 13 ~~~~~~A~~~~~~~l~~~-----~~--~~~~~~~~a~~~~~~~~~~~A~-------~~~~~~~~~~--p~~----~~~~~ 72 (201)
...+++|++.|.-++-.. +. -+..+..+|++|...|+.+... ..|.+++... |.. ..+.+
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 345666666665555321 11 1355566667777666643333 3333333221 111 34455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhc
Q psy12642 73 ELCDLYLSEGDYAKAVFCMEELFLH 97 (201)
Q Consensus 73 ~l~~~~~~~~~~~~A~~~~~~al~~ 97 (201)
.+|.++.+.|++++|..+|.+++..
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 5666666666666666666666644
No 288
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.069 Score=43.64 Aligned_cols=132 Identities=18% Similarity=0.012 Sum_probs=102.0
Q ss_pred HHHHHHHHHhcCcccHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-Hh
Q psy12642 19 ALEHLETIIKIDETNTAARKR--KICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEE-LF 95 (201)
Q Consensus 19 A~~~~~~~l~~~~~~~~~~~~--~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~-al 95 (201)
++..+..-+..+|.++..+.. +...+...+....+.-.+...+..+|++..+...++.+....|....++..+.+ +.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 555566666667777766443 355666678888888999999999999999999999888888877777766655 88
Q ss_pred hcCCCCHHHHHHH------HHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhh
Q psy12642 96 LHHPHNHLLHQRY------ADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL 153 (201)
Q Consensus 96 ~~~~~~~~~~~~l------a~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 153 (201)
...|.+......+ +......+ +..++....++++.+.|.+++..-.+.......-
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~c 190 (620)
T COG3914 130 WLSPDNAEFLGHLIRFYQLGRYLKLLG---RTAEAELALERAVDLLPKYPRVLGALMTARQEQC 190 (620)
T ss_pred hcCcchHHHHhhHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhc
Confidence 8889887766555 77777778 8899999999999999999887777766644433
No 289
>KOG1550|consensus
Probab=96.86 E-value=0.21 Score=41.54 Aligned_cols=131 Identities=21% Similarity=0.100 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHhcC---
Q psy12642 16 YEEALEHLETIIKIDETNTAARKRKICILKAK-----NKIPEAIKELTEYLKK-----FMTDQETWQELCDLYLSEG--- 82 (201)
Q Consensus 16 ~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~-----~~~~~A~~~~~~~~~~-----~p~~~~~~~~l~~~~~~~~--- 82 (201)
...|..+++.+-... +..+...+|.++..- .+.+.|+.+++.+... .-..+.+...+|.+|..-.
T Consensus 228 ~~~a~~~~~~~a~~g--~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG--HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhhc--chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 567888888876544 566677777777654 6899999999988761 1125567888999998743
Q ss_pred --CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHh
Q psy12642 83 --DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQV 152 (201)
Q Consensus 83 --~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 152 (201)
++..|+.++.++-... ++.+.+.+|.++.......++..|.++|..|... .+..+.+.++.||..=
T Consensus 306 ~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G 373 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELG 373 (552)
T ss_pred cccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhC
Confidence 6788999999987654 5567788888866544223788999999998775 5678899999999753
No 290
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.86 E-value=0.13 Score=38.92 Aligned_cols=136 Identities=18% Similarity=-0.005 Sum_probs=101.1
Q ss_pred hhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----c
Q psy12642 10 CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAK----NKIPEAIKELTEYLKKFMTDQETWQELCDLYLS----E 81 (201)
Q Consensus 10 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~ 81 (201)
....+++..+...+..+-.. .++.....++.+|... .+..+|+.++... .....+.+.+.+|..|.. .
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCcc
Confidence 44667889999999888762 3346777778877764 4678899999844 446678899999999987 4
Q ss_pred CCHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHc----CCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH
Q psy12642 82 GDYAKAVFCMEELFLHHPHN-HLLHQRYADILYTQ----GGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 151 (201)
Q Consensus 82 ~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~----~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 151 (201)
.+..+|..+|+++....... ......+|.++..- +...+...|+..|.++.... ++.+.+.++.+|..
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~ 199 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEK 199 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHc
Confidence 58999999999998775443 34577888877664 21123448999999988776 67888999988865
No 291
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.82 E-value=0.14 Score=38.69 Aligned_cols=122 Identities=16% Similarity=-0.008 Sum_probs=80.6
Q ss_pred hccCHHHHHHHHHHHHhcC-cccH-------HHHHHHHHHHHHcC-CHHHHHHHHHHHHHh----cCC---C-------H
Q psy12642 12 HFFRYEEALEHLETIIKID-ETNT-------AARKRKICILKAKN-KIPEAIKELTEYLKK----FMT---D-------Q 68 (201)
Q Consensus 12 ~~~~~~~A~~~~~~~l~~~-~~~~-------~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~----~p~---~-------~ 68 (201)
++|+++.|..++.++-... ..++ ...+..|......+ +++.|..+++++.+. .+. . .
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 4688899999888887654 2233 45556666677778 899999999888876 211 1 2
Q ss_pred HHHHHHHHHHHhcCCHH---HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCc
Q psy12642 69 ETWQELCDLYLSEGDYA---KAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNE 136 (201)
Q Consensus 69 ~~~~~l~~~~~~~~~~~---~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p 136 (201)
.+...++.+|...+.++ +|...++.+-...|+.+..+...-.++...+ +.+.+.+.+.+.+..-+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~---~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSF---DEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccC---ChhHHHHHHHHHHHhcc
Confidence 35666788888777654 4555666666667776666644445555555 66777777777666543
No 292
>KOG3617|consensus
Probab=96.76 E-value=0.034 Score=47.37 Aligned_cols=61 Identities=16% Similarity=0.134 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH----------HHhcC----------CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12642 35 AARKRKICILKAKNKIPEAIKELTEY----------LKKFM----------TDQETWQELCDLYLSEGDYAKAVFCMEEL 94 (201)
Q Consensus 35 ~~~~~~a~~~~~~~~~~~A~~~~~~~----------~~~~p----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 94 (201)
..+++.+.-+...++.+.|+++|+++ +..+| .++..|...|......|+.+.|+.+|..+
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 45666666667777777787777763 22222 23456666777777788888888777765
Q ss_pred h
Q psy12642 95 F 95 (201)
Q Consensus 95 l 95 (201)
-
T Consensus 939 ~ 939 (1416)
T KOG3617|consen 939 K 939 (1416)
T ss_pred h
Confidence 3
No 293
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.74 E-value=0.074 Score=38.43 Aligned_cols=89 Identities=20% Similarity=0.136 Sum_probs=64.3
Q ss_pred HcCCHHHHHHHHHHHHHh----cCCC---HHHHHHHHHHHHhcCCH-------HHHHHHHHHHhhcCCC------CHHHH
Q psy12642 46 AKNKIPEAIKELTEYLKK----FMTD---QETWQELCDLYLSEGDY-------AKAVFCMEELFLHHPH------NHLLH 105 (201)
Q Consensus 46 ~~~~~~~A~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~~~~-------~~A~~~~~~al~~~~~------~~~~~ 105 (201)
....+++|++.|.-++-. .++. +..+..+|-+|...|+- ..|+..|++++..... ...+.
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 345678888877766542 2222 45677788899989984 4566667676654432 24578
Q ss_pred HHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc
Q psy12642 106 QRYADILYTQGGLENIELAISHYLMAINLNEK 137 (201)
Q Consensus 106 ~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 137 (201)
+.+|.+.++.| ++++|+++|.+++.....
T Consensus 169 YLigeL~rrlg---~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 169 YLIGELNRRLG---NYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHhC---CHHHHHHHHHHHHcCCCC
Confidence 88999999999 999999999999986543
No 294
>KOG2300|consensus
Probab=96.70 E-value=0.18 Score=40.59 Aligned_cols=124 Identities=9% Similarity=-0.012 Sum_probs=95.8
Q ss_pred HHHhhhhcc--CHHHHHHHHHHHHhcCcccH---HHHHHHHHH-HHHcCCHHHHHHHHHHHHHhc---CCC----HHHHH
Q psy12642 6 YIIGCFHFF--RYEEALEHLETIIKIDETNT---AARKRKICI-LKAKNKIPEAIKELTEYLKKF---MTD----QETWQ 72 (201)
Q Consensus 6 ~~~~~~~~~--~~~~A~~~~~~~l~~~~~~~---~~~~~~a~~-~~~~~~~~~A~~~~~~~~~~~---p~~----~~~~~ 72 (201)
.+..+...| +...++.+++..+.-.|.+. ..+..+|.+ +....+++.|..+++++..+. |+. .++..
T Consensus 13 lAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~S 92 (629)
T KOG2300|consen 13 LAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAAS 92 (629)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHH
Confidence 344566677 88999999999998877653 566677775 556799999999999987653 443 34566
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHhhcCCCCHH----HHHHHHHHHHHcCCcccHHHHHHHHHHHH
Q psy12642 73 ELCDLYLSEG-DYAKAVFCMEELFLHHPHNHL----LHQRYADILYTQGGLENIELAISHYLMAI 132 (201)
Q Consensus 73 ~l~~~~~~~~-~~~~A~~~~~~al~~~~~~~~----~~~~la~~~~~~~~~~~~~~A~~~~~~al 132 (201)
.++.+|.... .++.+...+++++++..+.|. ..+.+++++.... ++..|++.+.-..
T Consensus 93 lLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idk---D~~sA~elLavga 154 (629)
T KOG2300|consen 93 LLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDK---DFPSALELLAVGA 154 (629)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhc---cchhHHHHHhccc
Confidence 7888888776 899999999999999887664 5678899988888 9999998865443
No 295
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=96.68 E-value=0.0041 Score=46.80 Aligned_cols=82 Identities=9% Similarity=-0.002 Sum_probs=67.0
Q ss_pred HhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHH
Q psy12642 27 IKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQE-LCDLYLSEGDYAKAVFCMEELFLHHPHNHLLH 105 (201)
Q Consensus 27 l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~-l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 105 (201)
...-|+++..|...+......|.+.+--..+.+++..+|.+.+.|.. -+.-+...++++.+...|.+++..+|++|..|
T Consensus 100 tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw 179 (435)
T COG5191 100 TNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIW 179 (435)
T ss_pred hhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHH
Confidence 33457888888888887778888888889999999999999998876 33445678899999999999999999998876
Q ss_pred HHH
Q psy12642 106 QRY 108 (201)
Q Consensus 106 ~~l 108 (201)
...
T Consensus 180 ~ey 182 (435)
T COG5191 180 IEY 182 (435)
T ss_pred HHH
Confidence 543
No 296
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.67 E-value=0.19 Score=40.11 Aligned_cols=122 Identities=15% Similarity=0.026 Sum_probs=88.7
Q ss_pred hhhhccCHHHHHHHHHHHHhcCcccHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642 9 GCFHFFRYEEALEHLETIIKIDETNTAARK-----RKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD 83 (201)
Q Consensus 9 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~-----~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 83 (201)
.+.+++++.+|...|.++.+...+.+..+. .+..-.+-+++.+.-...+...-+..|..+......|...+++++
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKE 94 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Confidence 367899999999999999887666543332 333333345777777777777777889888888888999999999
Q ss_pred HHHHHHHHHHHhhcCCCC--H-------------HHHHHHHHHHHHcCCcccHHHHHHHHHHHHc
Q psy12642 84 YAKAVFCMEELFLHHPHN--H-------------LLHQRYADILYTQGGLENIELAISHYLMAIN 133 (201)
Q Consensus 84 ~~~A~~~~~~al~~~~~~--~-------------~~~~~la~~~~~~~~~~~~~~A~~~~~~al~ 133 (201)
|.+|+..+......-..+ + ..-.-.+.++...| ++.+++..+++.+.
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g---~f~EgR~iLn~i~~ 156 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETG---RFSEGRAILNRIIE 156 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcC---CcchHHHHHHHHHH
Confidence 999999887665441111 1 11223477888889 99999999888774
No 297
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.65 E-value=0.18 Score=37.97 Aligned_cols=122 Identities=9% Similarity=0.000 Sum_probs=86.7
Q ss_pred HHHcCCHHHHHHHHHHHHHhc-CCC-------HHHHHHHHHHHHhcC-CHHHHHHHHHHHhhc----CC---CC------
Q psy12642 44 LKAKNKIPEAIKELTEYLKKF-MTD-------QETWQELCDLYLSEG-DYAKAVFCMEELFLH----HP---HN------ 101 (201)
Q Consensus 44 ~~~~~~~~~A~~~~~~~~~~~-p~~-------~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~----~~---~~------ 101 (201)
.+..|+++.|..++.++-... ..+ ...++..|......+ +++.|+.+++++... .+ ..
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 457899999999999987654 223 345667788888888 999999999999877 21 11
Q ss_pred -HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHH
Q psy12642 102 -HLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKE 165 (201)
Q Consensus 102 -~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 165 (201)
..++..++.++...+..+..++|....+.+-...|+.+..+..-..+..+.++.+.........
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~m 147 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRM 147 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHH
Confidence 1256778888888885566778888888887788887777655555555556555554444333
No 298
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.64 E-value=0.084 Score=36.95 Aligned_cols=99 Identities=11% Similarity=-0.010 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC--CCCHH----H
Q psy12642 34 TAARKRKICILKAKNKIPEAIKELTEYLKKFMTD---QETWQELCDLYLSEGDYAKAVFCMEELFLHH--PHNHL----L 104 (201)
Q Consensus 34 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~----~ 104 (201)
..++..+|..|...|+.+.|++.|.++....... .+.++.+..+....+++.....++.++-..- +.++. .
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 3778889999999999999999999987754332 4677778888889999999999988887543 33343 3
Q ss_pred HHHHHHHHHHcCCcccHHHHHHHHHHHHcCC
Q psy12642 105 HQRYADILYTQGGLENIELAISHYLMAINLN 135 (201)
Q Consensus 105 ~~~la~~~~~~~~~~~~~~A~~~~~~al~~~ 135 (201)
...-|..+...+ +|..|...|..+....
T Consensus 116 k~~~gL~~l~~r---~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 116 KVYEGLANLAQR---DFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHhc---hHHHHHHHHHccCcCC
Confidence 344566667778 9999999998876544
No 299
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=0.028 Score=41.61 Aligned_cols=61 Identities=15% Similarity=0.087 Sum_probs=31.0
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHH
Q psy12642 77 LYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIR 140 (201)
Q Consensus 77 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 140 (201)
.+...++++.|..+.++.+.++|.++.-+...|.+|...+ .+.-|+..+...++..|+.+.
T Consensus 190 ~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~---c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 190 ALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLG---CYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred HHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcC---CchhhHHHHHHHHHhCCCchH
Confidence 3444455555555555555555555555555555555555 455555555555555554443
No 300
>KOG1258|consensus
Probab=96.55 E-value=0.34 Score=39.82 Aligned_cols=117 Identities=12% Similarity=0.007 Sum_probs=98.8
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHhcCCH
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKF-MTDQETWQELCDLYLSEGDY 84 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 84 (201)
|..--...|+++...-.|+.++--.......|...+......|+.+-+-..+..+.+.. |..+.....-+.+.-..|++
T Consensus 303 yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~ 382 (577)
T KOG1258|consen 303 YLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNF 382 (577)
T ss_pred HhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccH
Confidence 34444568999999999999998888889999999999999999999988887777754 56677777778888889999
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHH
Q psy12642 85 AKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAI 125 (201)
Q Consensus 85 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~ 125 (201)
..|...+++.....|+...+-.......+..| +.+.+.
T Consensus 383 ~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~---~~~~~~ 420 (577)
T KOG1258|consen 383 DDAKVILQRIESEYPGLVEVVLRKINWERRKG---NLEDAN 420 (577)
T ss_pred HHHHHHHHHHHhhCCchhhhHHHHHhHHHHhc---chhhhh
Confidence 99999999999888998888888888888888 787777
No 301
>KOG3364|consensus
Probab=96.44 E-value=0.14 Score=33.95 Aligned_cols=82 Identities=13% Similarity=0.072 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHHhh-cCCC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHH
Q psy12642 68 QETWQELCDLYLSEG---DYAKAVFCMEELFL-HHPH-NHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRAL 142 (201)
Q Consensus 68 ~~~~~~l~~~~~~~~---~~~~A~~~~~~al~-~~~~-~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 142 (201)
....+.++.++.+.. +..+.+..++..++ -.|. .-...+.++..+++.+ +|+.++++....++..|++..+.
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlk---eY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLK---EYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHh---hHHHHHHHHHHHHhhCCCcHHHH
Confidence 456667777776554 46788999999996 4443 3557888999999999 99999999999999999998876
Q ss_pred HHHHHHHHHh
Q psy12642 143 YGLALSCHQV 152 (201)
Q Consensus 143 ~~l~~~~~~~ 152 (201)
..--.+...+
T Consensus 109 ~Lk~~ied~i 118 (149)
T KOG3364|consen 109 ELKETIEDKI 118 (149)
T ss_pred HHHHHHHHHH
Confidence 6554444443
No 302
>KOG4814|consensus
Probab=96.41 E-value=0.095 Score=43.42 Aligned_cols=87 Identities=7% Similarity=-0.002 Sum_probs=73.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCH------HHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHH
Q psy12642 74 LCDLYLSEGDYAKAVFCMEELFLHHPHNH------LLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLAL 147 (201)
Q Consensus 74 l~~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 147 (201)
-+.-.++..+|..++++|...+..-|.|. .....++.||.... +.+.|+++++.|-+.+|.++-....+..
T Consensus 360 ~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~---QLD~A~E~~~EAE~~d~~~~l~q~~~~~ 436 (872)
T KOG4814|consen 360 TAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLE---QLDNAVEVYQEAEEVDRQSPLCQLLMLQ 436 (872)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 45667889999999999999998777553 45678889999999 9999999999999999999988888888
Q ss_pred HHHHhhhhhhhhhhhH
Q psy12642 148 SCHQVLTSAKCSAAKK 163 (201)
Q Consensus 148 ~~~~~~~~~~a~~~~~ 163 (201)
+....|..++|.....
T Consensus 437 ~~~~E~~Se~AL~~~~ 452 (872)
T KOG4814|consen 437 SFLAEDKSEEALTCLQ 452 (872)
T ss_pred HHHHhcchHHHHHHHH
Confidence 8888888888865433
No 303
>KOG1310|consensus
Probab=96.36 E-value=0.019 Score=46.28 Aligned_cols=88 Identities=15% Similarity=0.106 Sum_probs=64.2
Q ss_pred cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12642 14 FRYEEALEHLETIIKIDETNTAARKRKICILKAK---NKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFC 90 (201)
Q Consensus 14 ~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~---~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 90 (201)
+....|+..|.+++...|.....+...+.++++. |+.-.|+.....+++++|....+|+.++.++...+++.+|+.+
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~ 467 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSC 467 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhh
Confidence 3556677777777777777777777777776664 4555666667777777777777888888888888888888877
Q ss_pred HHHHhhcCCCC
Q psy12642 91 MEELFLHHPHN 101 (201)
Q Consensus 91 ~~~al~~~~~~ 101 (201)
...+....|.+
T Consensus 468 ~~alq~~~Ptd 478 (758)
T KOG1310|consen 468 HWALQMSFPTD 478 (758)
T ss_pred HHHHhhcCchh
Confidence 77777777744
No 304
>KOG2300|consensus
Probab=96.32 E-value=0.44 Score=38.47 Aligned_cols=171 Identities=16% Similarity=0.093 Sum_probs=117.3
Q ss_pred hhhccCHHHHHHHHHHHHhcC---cc-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CH--HHHHHHHH
Q psy12642 10 CFHFFRYEEALEHLETIIKID---ET-------NTAARKRKICILKAKNKIPEAIKELTEYLKKFMT-DQ--ETWQELCD 76 (201)
Q Consensus 10 ~~~~~~~~~A~~~~~~~l~~~---~~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~--~~~~~l~~ 76 (201)
-.-.|++.+|++....+.+.. |. .+..+..+|......|.++.|...|..+.+.... +. .+..+++.
T Consensus 333 ~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi 412 (629)
T KOG2300|consen 333 RLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAI 412 (629)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHH
Confidence 345799999999888877643 33 3456777788777889999999999999886432 32 34456789
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCC----------HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc------cHH
Q psy12642 77 LYLSEGDYAKAVFCMEELFLHHPHN----------HLLHQRYADILYTQGGLENIELAISHYLMAINLNEK------NIR 140 (201)
Q Consensus 77 ~~~~~~~~~~A~~~~~~al~~~~~~----------~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~ 140 (201)
.|.+.|+-+.--+.++.. .|.| ..+++..|...+..+ ++.+|...+.+.++...- ..-
T Consensus 413 ~YL~~~~~ed~y~~ld~i---~p~nt~s~ssq~l~a~~~~v~glfaf~qn---~lnEaK~~l~e~Lkmanaed~~rL~a~ 486 (629)
T KOG2300|consen 413 SYLRIGDAEDLYKALDLI---GPLNTNSLSSQRLEASILYVYGLFAFKQN---DLNEAKRFLRETLKMANAEDLNRLTAC 486 (629)
T ss_pred HHHHhccHHHHHHHHHhc---CCCCCCcchHHHHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHhhcchhhHHHHHHH
Confidence 999988877655555443 4432 235677788888889 999999999999987621 122
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhHHHH------H--HHhHHHHHHHHHHHHhhhc
Q psy12642 141 ALYGLALSCHQVLTSAKCSAAKKKEI------S--KQMMWVSKHLARQYEEQQG 186 (201)
Q Consensus 141 ~~~~l~~~~~~~~~~~~a~~~~~~~~------~--~~~~~~~~~l~~~y~~~~~ 186 (201)
.+..|+.+....|+..++..-....+ . ...-|+..-+.+.|++...
T Consensus 487 ~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~ 540 (629)
T KOG2300|consen 487 SLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGE 540 (629)
T ss_pred HHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCc
Confidence 45567777888888888855332221 1 2334666667777765443
No 305
>KOG3617|consensus
Probab=96.22 E-value=0.04 Score=46.98 Aligned_cols=112 Identities=15% Similarity=0.054 Sum_probs=75.7
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHH----------hcCc----------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETII----------KIDE----------TNTAARKRKICILKAKNKIPEAIKELTEYLKK 63 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l----------~~~~----------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 63 (201)
.-|+-.+...++.+.|+++|+++- ..+| .++..|..-|...-..|+.+.|+.+|..+-+
T Consensus 862 y~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D- 940 (1416)
T KOG3617|consen 862 YNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD- 940 (1416)
T ss_pred HHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-
Confidence 346666777888999999888742 2222 2234555556667778899999888887654
Q ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Q psy12642 64 FMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMA 131 (201)
Q Consensus 64 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~a 131 (201)
|+.+..+.+-+|+.++|...-+ ...|..+.+.+|.-|...| ++.+|+..|.++
T Consensus 941 -------~fs~VrI~C~qGk~~kAa~iA~-----esgd~AAcYhlaR~YEn~g---~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 941 -------YFSMVRIKCIQGKTDKAARIAE-----ESGDKAACYHLARMYENDG---DVVKAVKFFTRA 993 (1416)
T ss_pred -------hhhheeeEeeccCchHHHHHHH-----hcccHHHHHHHHHHhhhhH---HHHHHHHHHHHH
Confidence 4555666667777777765443 3456667777777777777 777777777664
No 306
>KOG1914|consensus
Probab=96.21 E-value=0.14 Score=41.68 Aligned_cols=82 Identities=10% Similarity=0.125 Sum_probs=69.5
Q ss_pred HHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHH
Q psy12642 24 ETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHL 103 (201)
Q Consensus 24 ~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 103 (201)
++-++.+|.+...|..+..-+..+ -+++..+.+++.+..+|..+.+|.......+..++|+.-...|.+++..-=+ ..
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lD 87 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LD 87 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-Hh
Confidence 567789999999999998866655 8999999999999999999999999999999999999999999999854322 44
Q ss_pred HHHH
Q psy12642 104 LHQR 107 (201)
Q Consensus 104 ~~~~ 107 (201)
+|..
T Consensus 88 LW~l 91 (656)
T KOG1914|consen 88 LWKL 91 (656)
T ss_pred HHHH
Confidence 5443
No 307
>KOG0529|consensus
Probab=96.20 E-value=0.45 Score=37.45 Aligned_cols=138 Identities=14% Similarity=0.073 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc------------CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC-
Q psy12642 16 YEEALEHLETIIKIDETNTAARKRKICILKAK------------NKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG- 82 (201)
Q Consensus 16 ~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~------------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~- 82 (201)
-.++++.-.+.+..+|....+|...-.++... .-.++-+.....+++.+|++..+|+....+..+.+
T Consensus 45 d~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~ 124 (421)
T KOG0529|consen 45 DEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPH 124 (421)
T ss_pred chHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCC
Confidence 34677777888888998887776654443322 23466677888899999999999999988887665
Q ss_pred -CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHc-CCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhh
Q psy12642 83 -DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQ-GGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL 153 (201)
Q Consensus 83 -~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 153 (201)
++..=+...+++++.+|.|-.+|...=.+.... .+.+...+-+++..+++.-++.|..+|.+...+...+-
T Consensus 125 ~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~ 197 (421)
T KOG0529|consen 125 SDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLH 197 (421)
T ss_pred chHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhc
Confidence 368889999999999999877765443332222 21124677889999999999999999999888887543
No 308
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.19 E-value=0.18 Score=32.70 Aligned_cols=86 Identities=13% Similarity=0.082 Sum_probs=48.8
Q ss_pred hhhccCHHHHHHHHHHHHhcCcc------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hcCCCHHH
Q psy12642 10 CFHFFRYEEALEHLETIIKIDET------------NTAARKRKICILKAKNKIPEAIKELTEYLK-------KFMTDQET 70 (201)
Q Consensus 10 ~~~~~~~~~A~~~~~~~l~~~~~------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-------~~p~~~~~ 70 (201)
-...|.|++|...+.++++...+ +..++-.++..+..+|+|++++.....++. ++.+....
T Consensus 19 ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGkl 98 (144)
T PF12968_consen 19 QLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKL 98 (144)
T ss_dssp HHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchh
Confidence 34567788888888777765422 235666777777777877776666655554 22333222
Q ss_pred H----HHHHHHHHhcCCHHHHHHHHHHHh
Q psy12642 71 W----QELCDLYLSEGDYAKAVFCMEELF 95 (201)
Q Consensus 71 ~----~~l~~~~~~~~~~~~A~~~~~~al 95 (201)
| +..+..+...|+.++|+..|+.+-
T Consensus 99 WIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 99 WIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 2 334555556666666666665543
No 309
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.17 E-value=0.16 Score=35.60 Aligned_cols=95 Identities=12% Similarity=-0.092 Sum_probs=71.8
Q ss_pred HHHHhhhhccCHHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--CCCHH----HHHHHH
Q psy12642 5 VYIIGCFHFFRYEEALEHLETIIKIDET---NTAARKRKICILKAKNKIPEAIKELTEYLKKF--MTDQE----TWQELC 75 (201)
Q Consensus 5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~----~~~~l~ 75 (201)
-.+..|.+.|+.+.|++.|.++.+.... -...+..+..+.+..+++......+.++-... +.+.. ....-|
T Consensus 41 ~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~g 120 (177)
T PF10602_consen 41 DLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEG 120 (177)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 4556688999999999999998876532 23667778888999999999999998876643 23333 233357
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCC
Q psy12642 76 DLYLSEGDYAKAVFCMEELFLHHP 99 (201)
Q Consensus 76 ~~~~~~~~~~~A~~~~~~al~~~~ 99 (201)
..++..++|.+|...|-.++....
T Consensus 121 L~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 121 LANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHhchHHHHHHHHHccCcCCC
Confidence 778889999999999988765543
No 310
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=96.12 E-value=0.16 Score=44.55 Aligned_cols=95 Identities=14% Similarity=0.073 Sum_probs=74.4
Q ss_pred hhhhccCHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHc----C---CHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy12642 9 GCFHFFRYEEALEHLETIIKIDETN---TAARKRKICILKAK----N---KIPEAIKELTEYLKKFMTDQETWQELCDLY 78 (201)
Q Consensus 9 ~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~~a~~~~~~----~---~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 78 (201)
++...+.|++|+..|.++-..-|.- ..+.++.|.+...+ | .+++|+..|++.. ..|.-|--|...+.+|
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 562 (932)
T PRK13184 484 AFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKALVY 562 (932)
T ss_pred HHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHHHH
Confidence 3556678999999999998877643 47777888776653 3 3677777777644 3466666777888999
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCHHH
Q psy12642 79 LSEGDYAKAVFCMEELFLHHPHNHLL 104 (201)
Q Consensus 79 ~~~~~~~~A~~~~~~al~~~~~~~~~ 104 (201)
.++|++++-++++.-+++..|..|..
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 563 QRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence 99999999999999999999988764
No 311
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.12 E-value=0.23 Score=33.46 Aligned_cols=74 Identities=16% Similarity=0.018 Sum_probs=66.3
Q ss_pred hccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Q psy12642 12 HFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYA 85 (201)
Q Consensus 12 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 85 (201)
..++++++...++.+--..|+.+.+...-|.++...|++.+|+..++......+..+...-.++.|+.-.|+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 37899999999999999999999999999999999999999999999999888888877777888888887754
No 312
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.10 E-value=0.5 Score=37.10 Aligned_cols=133 Identities=14% Similarity=-0.128 Sum_probs=95.5
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcC-----cc---------------------cH---HHHHHHHHHHHHcCCHHHHHHH
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKID-----ET---------------------NT---AARKRKICILKAKNKIPEAIKE 56 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~-----~~---------------------~~---~~~~~~a~~~~~~~~~~~A~~~ 56 (201)
...-+..+|++..|.+++++++-.- |. |. .+.++......+.|-+..|.++
T Consensus 46 ls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~ 125 (360)
T PF04910_consen 46 LSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEW 125 (360)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 3444667899999999998886421 11 11 4555667788889999999999
Q ss_pred HHHHHHhcCC-CHHHHHHHH-HHHHhcCCHHHHHHHHHHHhhcCCC-----CHHHHHHHHHHHHHcCCcccH--------
Q psy12642 57 LTEYLKKFMT-DQETWQELC-DLYLSEGDYAKAVFCMEELFLHHPH-----NHLLHQRYADILYTQGGLENI-------- 121 (201)
Q Consensus 57 ~~~~~~~~p~-~~~~~~~l~-~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~la~~~~~~~~~~~~-------- 121 (201)
.+-.+.++|. ||-.....- ....+.++|+--+..++........ -|..-+..+.+++..+ +.
T Consensus 126 ~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~---~~~~~~~~~~ 202 (360)
T PF04910_consen 126 CKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLE---KEESSQSSAQ 202 (360)
T ss_pred HHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhc---Cccccccccc
Confidence 9999999999 765444444 4445778888788877776653222 2345677777777777 55
Q ss_pred -------HHHHHHHHHHHcCCcccHHH
Q psy12642 122 -------ELAISHYLMAINLNEKNIRA 141 (201)
Q Consensus 122 -------~~A~~~~~~al~~~p~~~~~ 141 (201)
+.|...+.+|+...|.-...
T Consensus 203 ~~~~~~~~~A~~~L~~Ai~~fP~vl~~ 229 (360)
T PF04910_consen 203 SGRSENSESADEALQKAILRFPWVLVP 229 (360)
T ss_pred cccccchhHHHHHHHHHHHHhHHHHHH
Confidence 89999999999998875443
No 313
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=96.08 E-value=0.28 Score=34.84 Aligned_cols=75 Identities=19% Similarity=0.069 Sum_probs=57.7
Q ss_pred hcCCHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc----cHHHHHHHHHHHHHhhh
Q psy12642 80 SEGDYAKAVFCMEELFLHHP-HNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK----NIRALYGLALSCHQVLT 154 (201)
Q Consensus 80 ~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~ 154 (201)
..-.=+.|...|-++-.... +++...+.+|..|. .. +.++++..+.+++++.+. ++..+..|+.++.+.|+
T Consensus 118 sr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-kr---D~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 118 SRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KR---DPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred hccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-cc---CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 34344667777766544322 67888899988766 55 699999999999998754 58899999999999999
Q ss_pred hhhh
Q psy12642 155 SAKC 158 (201)
Q Consensus 155 ~~~a 158 (201)
++.|
T Consensus 194 ~e~A 197 (203)
T PF11207_consen 194 YEQA 197 (203)
T ss_pred hhhh
Confidence 8887
No 314
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.07 E-value=0.02 Score=29.21 Aligned_cols=29 Identities=24% Similarity=0.409 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q psy12642 69 ETWQELCDLYLSEGDYAKAVFCMEELFLH 97 (201)
Q Consensus 69 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 97 (201)
.++..+|.+|..+|++++|..++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 34566677777777777777777776653
No 315
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=96.07 E-value=0.15 Score=40.24 Aligned_cols=86 Identities=9% Similarity=0.065 Sum_probs=55.6
Q ss_pred hhhhccCHHHHHHHHHHHHhcC--------cccH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH
Q psy12642 9 GCFHFFRYEEALEHLETIIKID--------ETNT----------AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQET 70 (201)
Q Consensus 9 ~~~~~~~~~~A~~~~~~~l~~~--------~~~~----------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 70 (201)
.++++++|..|..-|..+++.. |..+ .+--.+..||+.+++.+.|+....+.|.++|..+.-
T Consensus 185 ~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frn 264 (569)
T PF15015_consen 185 SCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRN 264 (569)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhH
Confidence 4566666666666666666643 1111 223346667777777777777777777777777777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q psy12642 71 WQELCDLYLSEGDYAKAVFCMEEL 94 (201)
Q Consensus 71 ~~~l~~~~~~~~~~~~A~~~~~~a 94 (201)
+...+.++....+|.+|...+--+
T Consensus 265 HLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 265 HLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777776554433
No 316
>KOG0529|consensus
Probab=95.98 E-value=0.18 Score=39.53 Aligned_cols=140 Identities=11% Similarity=0.036 Sum_probs=106.5
Q ss_pred hccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----cCCHH
Q psy12642 12 HFFRYEEALEHLETIIKIDETNTAARKRKICILKAKN--KIPEAIKELTEYLKKFMTDQETWQELCDLYLS----EGDYA 85 (201)
Q Consensus 12 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~ 85 (201)
++.-.++-+.+...++..+|.+..+|..+..++...+ ++..-+.+.+++++.+|.+..+|...-.+... .....
T Consensus 87 k~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~ 166 (421)
T KOG0529|consen 87 KQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEK 166 (421)
T ss_pred HHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccch
Confidence 3445677788999999999999999999999998765 46888999999999999998777664333322 22366
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCC---------cccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH
Q psy12642 86 KAVFCMEELFLHHPHNHLLHQRYADILYTQGG---------LENIELAISHYLMAINLNEKNIRALYGLALSCHQ 151 (201)
Q Consensus 86 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~---------~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 151 (201)
+=+.+..++|..++.|..+|.....++...-+ ..-...-++.-..++-.+|++..+|++.-....+
T Consensus 167 ~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl~~ 241 (421)
T KOG0529|consen 167 EELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLLGR 241 (421)
T ss_pred hHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhhcc
Confidence 77888899999999999999988877663321 1134566777888899999999988774444433
No 317
>KOG1310|consensus
Probab=95.97 E-value=0.061 Score=43.57 Aligned_cols=91 Identities=13% Similarity=0.016 Sum_probs=75.8
Q ss_pred HcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHH
Q psy12642 46 AKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSE---GDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIE 122 (201)
Q Consensus 46 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~ 122 (201)
..+....++..+.+++...|.....+...+.++++. |+.-.|+...-.++.++|....+++.++.++...+ .+.
T Consensus 386 y~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~---r~~ 462 (758)
T KOG1310|consen 386 YESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELT---RYL 462 (758)
T ss_pred hhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHh---hHH
Confidence 345567888999999999999888888888777653 56677888888899999999999999999999999 999
Q ss_pred HHHHHHHHHHcCCcccH
Q psy12642 123 LAISHYLMAINLNEKNI 139 (201)
Q Consensus 123 ~A~~~~~~al~~~p~~~ 139 (201)
+|+.+...+....|.+.
T Consensus 463 eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 463 EALSCHWALQMSFPTDV 479 (758)
T ss_pred HhhhhHHHHhhcCchhh
Confidence 99999888877778544
No 318
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.84 E-value=0.12 Score=30.67 Aligned_cols=54 Identities=17% Similarity=0.220 Sum_probs=33.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH---HHHHhcCCHHHHHHHHHH
Q psy12642 40 KICILKAKNKIPEAIKELTEYLKKFMTDQETWQELC---DLYLSEGDYAKAVFCMEE 93 (201)
Q Consensus 40 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~---~~~~~~~~~~~A~~~~~~ 93 (201)
.|.-++..++.++|+..+.++++..++.+.-+..+| .+|...|+|.+.+.+--+
T Consensus 12 ~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 12 KGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667777777777777777666655555444 456667777776665443
No 319
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.83 E-value=0.079 Score=39.72 Aligned_cols=64 Identities=16% Similarity=0.161 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHc
Q psy12642 67 DQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAIN 133 (201)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~ 133 (201)
...++..++..+...|+++.+...+++.+..+|.+...+..+-..+...| +...|+..|.+.-+
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g---~~~~ai~~y~~l~~ 215 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNG---RQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcC---CchHHHHHHHHHHH
Confidence 34567778888888888888888888888888888888888888888888 88888888877665
No 320
>KOG1914|consensus
Probab=95.80 E-value=0.86 Score=37.36 Aligned_cols=143 Identities=10% Similarity=0.044 Sum_probs=94.4
Q ss_pred CHHHHHHHHHHHHhcCcccH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH-HHhcCCHHHHHHHHH
Q psy12642 15 RYEEALEHLETIIKIDETNT-AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDL-YLSEGDYAKAVFCME 92 (201)
Q Consensus 15 ~~~~A~~~~~~~l~~~~~~~-~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~~~~~~A~~~~~ 92 (201)
.++..-+.+++++.....++ -++..+...-.+..=.+.|..+|.++.+..-....++..-|.. |..+++.+-|...|+
T Consensus 346 ~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFe 425 (656)
T KOG1914|consen 346 KEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFE 425 (656)
T ss_pred hhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHH
Confidence 45666667777766443222 3344444444455557777788888776433333344333322 446788888888888
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcC--Ccc-cHHHHHHHHHHHHHhhhhhhhhh
Q psy12642 93 ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL--NEK-NIRALYGLALSCHQVLTSAKCSA 160 (201)
Q Consensus 93 ~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~--~p~-~~~~~~~l~~~~~~~~~~~~a~~ 160 (201)
-.++..++++..-..+...+...+ +-..+...|++++.. .|+ ..+.|..+...-...|+......
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lN---dd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~ 493 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLN---DDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILK 493 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhC---cchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHH
Confidence 888888888888888888888888 778888888888876 443 34677777777777777766644
No 321
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.80 E-value=0.092 Score=32.56 Aligned_cols=53 Identities=21% Similarity=0.248 Sum_probs=27.2
Q ss_pred HHcCCHHHHHHHHHHHHHhcCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q psy12642 45 KAKNKIPEAIKELTEYLKKFMTD---------QETWQELCDLYLSEGDYAKAVFCMEELFLH 97 (201)
Q Consensus 45 ~~~~~~~~A~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 97 (201)
...|++..|++.+.+..+..... ..+...+|.++...|++++|+..+++++.+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34455555555555544432111 123444556666666666666666666654
No 322
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.78 E-value=0.11 Score=38.65 Aligned_cols=68 Identities=16% Similarity=0.093 Sum_probs=46.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHH
Q psy12642 42 CILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYA 109 (201)
Q Consensus 42 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la 109 (201)
..+...++++.|....++.+..+|.++.-+.-.|.+|.+.|.+.-|+..++..+...|+++.+-...+
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~ 256 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRA 256 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHH
Confidence 34556677777777777777777777777777777777777777777777777777777665544433
No 323
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=95.70 E-value=0.055 Score=27.04 Aligned_cols=30 Identities=17% Similarity=0.183 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHH--HHHHhhcCC
Q psy12642 70 TWQELCDLYLSEGDYAKAVFC--MEELFLHHP 99 (201)
Q Consensus 70 ~~~~l~~~~~~~~~~~~A~~~--~~~al~~~~ 99 (201)
.+..+|..+..+|++++|+.. |.-+..+++
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 445555555666666666666 224444444
No 324
>KOG1258|consensus
Probab=95.68 E-value=0.8 Score=37.77 Aligned_cols=123 Identities=10% Similarity=-0.033 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-CCCCHHHHHHHHHHH
Q psy12642 34 TAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLH-HPHNHLLHQRYADIL 112 (201)
Q Consensus 34 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~la~~~ 112 (201)
...|......-...|++......+++++-.-.....+|...+......|+..-|-..+..+.+. .|..+.....-+.+-
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 3566666777778899999999999999877777899999999999999999999888888765 567788888888888
Q ss_pred HHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhh
Q psy12642 113 YTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCS 159 (201)
Q Consensus 113 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~ 159 (201)
-..| ++..|...+++..+..|+...+-..-+....+.|+.+.+.
T Consensus 377 e~~~---n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 377 ESNG---NFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred Hhhc---cHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 8889 9999999999999888998887777777777888777775
No 325
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.65 E-value=0.12 Score=38.86 Aligned_cols=75 Identities=15% Similarity=0.055 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhH
Q psy12642 84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKK 163 (201)
Q Consensus 84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 163 (201)
+..-+...++.++ .....++..++..+...+ +++.++..+++.+..+|.+...|..+...|...|+...|+....
T Consensus 137 f~~WV~~~R~~l~--e~~~~~l~~lae~~~~~~---~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~ 211 (280)
T COG3629 137 FDEWVLEQRRALE--ELFIKALTKLAEALIACG---RADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYR 211 (280)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHH
Confidence 4444444444442 223557788888888888 88899999999999999888888889999999888888877554
No 326
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=95.63 E-value=0.075 Score=41.88 Aligned_cols=83 Identities=14% Similarity=0.148 Sum_probs=50.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCC-------------C-----HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCc
Q psy12642 75 CDLYLSEGDYAKAVFCMEELFLHHPH-------------N-----HLLHQRYADILYTQGGLENIELAISHYLMAINLNE 136 (201)
Q Consensus 75 ~~~~~~~~~~~~A~~~~~~al~~~~~-------------~-----~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p 136 (201)
|..++++++|..|..-|..++.+... + ......+..||..++ +.+.|+.+-.+.+-++|
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~r---kpdlALnh~hrsI~lnP 259 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMR---KPDLALNHSHRSINLNP 259 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcC---CCchHHHHHhhhhhcCc
Confidence 34455666666666655555544211 1 113345666677777 67777777777777777
Q ss_pred ccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642 137 KNIRALYGLALSCHQVLTSAKCSA 160 (201)
Q Consensus 137 ~~~~~~~~l~~~~~~~~~~~~a~~ 160 (201)
.+...+..-+.|.+.+.++.+|.+
T Consensus 260 ~~frnHLrqAavfR~LeRy~eAar 283 (569)
T PF15015_consen 260 SYFRNHLRQAAVFRRLERYSEAAR 283 (569)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777766643
No 327
>KOG2581|consensus
Probab=95.59 E-value=0.4 Score=37.75 Aligned_cols=129 Identities=12% Similarity=0.015 Sum_probs=89.9
Q ss_pred HHhhhhccCHHHHHHHHHHHHhcCc---------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CCC-HHHH
Q psy12642 7 IIGCFHFFRYEEALEHLETIIKIDE---------TNTAARKRKICILKAKNKIPEAIKELTEYLKKF-----MTD-QETW 71 (201)
Q Consensus 7 ~~~~~~~~~~~~A~~~~~~~l~~~~---------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----p~~-~~~~ 71 (201)
.+-+.+++++.+|..+-+..+..-. -....|+.+..++-..|+...-...+...+... ... ....
T Consensus 133 ~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLi 212 (493)
T KOG2581|consen 133 LLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLI 212 (493)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHH
Confidence 3445667899999888777665321 112556666777777888777666666655532 111 3344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhc--CC--CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCccc
Q psy12642 72 QELCDLYLSEGDYAKAVFCMEELFLH--HP--HNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN 138 (201)
Q Consensus 72 ~~l~~~~~~~~~~~~A~~~~~~al~~--~~--~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 138 (201)
..+-..|...+.|+.|-....+..-- .. .-...++.+|.+..-.. +|..|.++|.+|+...|.+
T Consensus 213 N~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiql---dYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 213 NLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQL---DYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhc---chhHHHHHHHHHHHhCcch
Confidence 55667788889999998887776511 11 22456788999999999 9999999999999999973
No 328
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.58 E-value=0.97 Score=37.32 Aligned_cols=108 Identities=20% Similarity=-0.005 Sum_probs=83.3
Q ss_pred CCHHHHHHHHHHHHHhcCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHH
Q psy12642 48 NKIPEAIKELTEYLKKFMTDQETWQE--LCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAI 125 (201)
Q Consensus 48 ~~~~~A~~~~~~~~~~~p~~~~~~~~--l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~ 125 (201)
|....++..+...+..+|.++.+... +...+...+....+...+..++..+|.+..+..+++......+ ....+.
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~---~~~~~~ 121 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDG---LQFLAL 121 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhh---hHHHHH
Confidence 44444677777777788888877544 4666777888889999999999999999999999999988777 555554
Q ss_pred -HHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhh
Q psy12642 126 -SHYLMAINLNEKNIRALYGLALSCHQVLTSAKCS 159 (201)
Q Consensus 126 -~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~ 159 (201)
.....+....|++......+..+|. .+++.++.
T Consensus 122 ~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~l 155 (620)
T COG3914 122 ADISEIAEWLSPDNAEFLGHLIRFYQ-LGRYLKLL 155 (620)
T ss_pred HHHHHHHHhcCcchHHHHhhHHHHHH-HHHHHHHh
Confidence 4555588999999988888877777 77666663
No 329
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.53 E-value=0.37 Score=31.27 Aligned_cols=88 Identities=16% Similarity=0.037 Sum_probs=61.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhh-------cCCCCHH
Q psy12642 43 ILKAKNKIPEAIKELTEYLKKFMTD------------QETWQELCDLYLSEGDYAKAVFCMEELFL-------HHPHNHL 103 (201)
Q Consensus 43 ~~~~~~~~~~A~~~~~~~~~~~p~~------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~-------~~~~~~~ 103 (201)
-.+..|.+++|...+.+++....+- .-++..|+..+...|+|++++..-.+++. ++.+...
T Consensus 18 ~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGk 97 (144)
T PF12968_consen 18 RQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGK 97 (144)
T ss_dssp HHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccch
Confidence 3455688999999999988753221 23556678888999999988777776663 4444433
Q ss_pred ----HHHHHHHHHHHcCCcccHHHHHHHHHHHHc
Q psy12642 104 ----LHQRYADILYTQGGLENIELAISHYLMAIN 133 (201)
Q Consensus 104 ----~~~~la~~~~~~~~~~~~~~A~~~~~~al~ 133 (201)
+.+..+..+...| +.++|+..|+.+-+
T Consensus 98 lWIaaVfsra~Al~~~G---r~~eA~~~fr~agE 128 (144)
T PF12968_consen 98 LWIAAVFSRAVALEGLG---RKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHHHHTT----HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcC---ChHHHHHHHHHHHH
Confidence 3467788888888 99999999888754
No 330
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.44 E-value=1.1 Score=36.08 Aligned_cols=159 Identities=11% Similarity=-0.018 Sum_probs=90.1
Q ss_pred HHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------c-------CCCH-
Q psy12642 5 VYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKK--------F-------MTDQ- 68 (201)
Q Consensus 5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~-------p~~~- 68 (201)
-|...+...++-+.|+..........|. ....++.+|-..++.+....+|+++++. . .+++
T Consensus 307 dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e 383 (660)
T COG5107 307 DYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFE 383 (660)
T ss_pred HHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCcc
Confidence 3444455667777777766666554444 6667777777777766666656554431 0 0111
Q ss_pred ---H-----------HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHH-HHHcCCcccHHHHHHHHHHHHc
Q psy12642 69 ---E-----------TWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADI-LYTQGGLENIELAISHYLMAIN 133 (201)
Q Consensus 69 ---~-----------~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~-~~~~~~~~~~~~A~~~~~~al~ 133 (201)
+ +|..+-..-.+..-.+.|...|-++-+..--.+.++..-|.+ +...+ ++..|...|+-.+.
T Consensus 384 ~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~---d~~ta~~ifelGl~ 460 (660)
T COG5107 384 YSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATG---DRATAYNIFELGLL 460 (660)
T ss_pred ccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcC---CcchHHHHHHHHHH
Confidence 1 111111222233445666677766655432222222222222 34556 78888899998888
Q ss_pred CCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Q psy12642 134 LNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQ 169 (201)
Q Consensus 134 ~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 169 (201)
..|+.+......-......++.+.|+.--++.+..+
T Consensus 461 ~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~ 496 (660)
T COG5107 461 KFPDSTLYKEKYLLFLIRINDEENARALFETSVERL 496 (660)
T ss_pred hCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHH
Confidence 888877655555566667787777766555444333
No 331
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.34 E-value=0.17 Score=31.31 Aligned_cols=57 Identities=18% Similarity=0.135 Sum_probs=44.7
Q ss_pred hhhhccCHHHHHHHHHHHHhcCcc---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q psy12642 9 GCFHFFRYEEALEHLETIIKIDET---------NTAARKRKICILKAKNKIPEAIKELTEYLKKFM 65 (201)
Q Consensus 9 ~~~~~~~~~~A~~~~~~~l~~~~~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p 65 (201)
.....|+|.+|++.+.+.+..... ...+...++.+....|++++|+..+++++++..
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 345679999998888887764321 235667789999999999999999999998643
No 332
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=95.29 E-value=0.13 Score=38.47 Aligned_cols=62 Identities=11% Similarity=0.047 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy12642 19 ALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLS 80 (201)
Q Consensus 19 A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 80 (201)
|..+|.++....|.+...+..+|.++...|+.-.|+-+|-+++-.....+.+...+..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666655555554333335555555555444
No 333
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.25 E-value=0.08 Score=26.82 Aligned_cols=29 Identities=24% Similarity=0.243 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy12642 35 AARKRKICILKAKNKIPEAIKELTEYLKK 63 (201)
Q Consensus 35 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 63 (201)
.++..+|.+|...|++++|+.++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46778999999999999999999999874
No 334
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=95.14 E-value=0.16 Score=38.00 Aligned_cols=62 Identities=11% Similarity=0.108 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q psy12642 53 AIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYT 114 (201)
Q Consensus 53 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 114 (201)
|+.+|.+++...|++...++.+|.++...|+.-.|+-+|-+++......+.+..++...+..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 56788888888888888888888888888888888888888876655557677777766555
No 335
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=95.05 E-value=0.59 Score=33.28 Aligned_cols=79 Identities=16% Similarity=0.070 Sum_probs=57.3
Q ss_pred HHHcCCHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC----CHHHHHHHHHHHHHcCCc
Q psy12642 44 LKAKNKIPEAIKELTEYLK-KFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPH----NHLLHQRYADILYTQGGL 118 (201)
Q Consensus 44 ~~~~~~~~~A~~~~~~~~~-~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~la~~~~~~~~~ 118 (201)
++..-.-+.|...|-++-. -.-++++..+.+|..|. ..+.++++..+.+++.+.+. |+..+..++.++...+
T Consensus 116 ~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~-- 192 (203)
T PF11207_consen 116 HWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLK-- 192 (203)
T ss_pred HhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhc--
Confidence 3334333556655554332 22356888888887766 78899999999999987543 5889999999999999
Q ss_pred ccHHHHHH
Q psy12642 119 ENIELAIS 126 (201)
Q Consensus 119 ~~~~~A~~ 126 (201)
+++.|.-
T Consensus 193 -~~e~AYi 199 (203)
T PF11207_consen 193 -NYEQAYI 199 (203)
T ss_pred -chhhhhh
Confidence 9988753
No 336
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.04 E-value=0.29 Score=29.11 Aligned_cols=56 Identities=13% Similarity=0.004 Sum_probs=44.0
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHH---HHHHHHcCCHHHHHHHHHHHH
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRK---ICILKAKNKIPEAIKELTEYL 61 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~---a~~~~~~~~~~~A~~~~~~~~ 61 (201)
-++.++...+.++|+..+.++++..++.+..+..+ ..++...|++.+.+.+...=+
T Consensus 12 ~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 12 KGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred HHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35668899999999999999999888777555544 557888999999887755433
No 337
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=94.95 E-value=0.27 Score=43.24 Aligned_cols=99 Identities=16% Similarity=0.055 Sum_probs=79.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhc----C---CHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q psy12642 41 ICILKAKNKIPEAIKELTEYLKKFMTD---QETWQELCDLYLSE----G---DYAKAVFCMEELFLHHPHNHLLHQRYAD 110 (201)
Q Consensus 41 a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----~---~~~~A~~~~~~al~~~~~~~~~~~~la~ 110 (201)
..++...+.|+.|+..|++....+|+. .++.+..|.....+ | .+++|+.-|++.- -.|.-|.-+...|.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 560 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKAL 560 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHH
Confidence 456777889999999999999999876 46777788766532 3 4677888777654 45677777888889
Q ss_pred HHHHcCCcccHHHHHHHHHHHHcCCcccHHHHH
Q psy12642 111 ILYTQGGLENIELAISHYLMAINLNEKNIRALY 143 (201)
Q Consensus 111 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 143 (201)
+|..++ ++++-+++|.-+++..|..|..-.
T Consensus 561 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 590 (932)
T PRK13184 561 VYQRLG---EYNEEIKSLLLALKRYSQHPEISR 590 (932)
T ss_pred HHHHhh---hHHHHHHHHHHHHHhcCCCCccHH
Confidence 999999 999999999999999998775433
No 338
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=94.55 E-value=0.064 Score=24.49 Aligned_cols=20 Identities=25% Similarity=0.267 Sum_probs=8.8
Q ss_pred HHHHHHHHhcCCHHHHHHHH
Q psy12642 72 QELCDLYLSEGDYAKAVFCM 91 (201)
Q Consensus 72 ~~l~~~~~~~~~~~~A~~~~ 91 (201)
..+|.++..+|++++|...+
T Consensus 5 ~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 33444444444444444433
No 339
>KOG1839|consensus
Probab=94.43 E-value=0.77 Score=41.26 Aligned_cols=145 Identities=13% Similarity=0.050 Sum_probs=105.3
Q ss_pred hhccCHHHHHH------HHH-HHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------cCCCHHHHHHHH
Q psy12642 11 FHFFRYEEALE------HLE-TIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKK--------FMTDQETWQELC 75 (201)
Q Consensus 11 ~~~~~~~~A~~------~~~-~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~ 75 (201)
...|.+.+|.+ .+. .....+|.....+..++.++...++.++|+..-.++.-. .|+....+..++
T Consensus 943 ~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nla 1022 (1236)
T KOG1839|consen 943 LLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLA 1022 (1236)
T ss_pred hcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHH
Confidence 34556665655 555 333357888899999999999999999999887665432 244456777788
Q ss_pred HHHHhcCCHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc--------cH
Q psy12642 76 DLYLSEGDYAKAVFCMEELFLH--------HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK--------NI 139 (201)
Q Consensus 76 ~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~--------~~ 139 (201)
...+..++...|+..+.++..+ .|.-.....+++.++...+ +++.|+++.+.|...+.. ..
T Consensus 1023 l~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~---e~d~al~~le~A~a~~~~v~g~~~l~~~ 1099 (1236)
T KOG1839|consen 1023 LYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVE---EADTALRYLESALAKNKKVLGPKELETA 1099 (1236)
T ss_pred HHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHH---HHHHHHHHHHHHHHHHhhhcCccchhhh
Confidence 8888999999999999888754 3444556677888888888 999999999999986532 23
Q ss_pred HHHHHHHHHHHHhhhhhhh
Q psy12642 140 RALYGLALSCHQVLTSAKC 158 (201)
Q Consensus 140 ~~~~~l~~~~~~~~~~~~a 158 (201)
..+..++....-++++..|
T Consensus 1100 ~~~~~~a~l~~s~~dfr~a 1118 (1236)
T KOG1839|consen 1100 LSYHALARLFESMKDFRNA 1118 (1236)
T ss_pred hHHHHHHHHHhhhHHHHHH
Confidence 3445556666666666555
No 340
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=94.40 E-value=0.086 Score=26.66 Aligned_cols=27 Identities=15% Similarity=0.272 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q psy12642 70 TWQELCDLYLSEGDYAKAVFCMEELFL 96 (201)
Q Consensus 70 ~~~~l~~~~~~~~~~~~A~~~~~~al~ 96 (201)
++..+|.+-+..++|++|+..|++++.
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344555555555555555555555554
No 341
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=94.22 E-value=0.083 Score=24.09 Aligned_cols=24 Identities=29% Similarity=0.117 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q psy12642 35 AARKRKICILKAKNKIPEAIKELT 58 (201)
Q Consensus 35 ~~~~~~a~~~~~~~~~~~A~~~~~ 58 (201)
.+...+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456678888888888888887765
No 342
>KOG2041|consensus
Probab=94.10 E-value=3 Score=35.58 Aligned_cols=60 Identities=15% Similarity=0.228 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHh----------------------hcCCCCHHHHHHHHHHHHHcCCcccHHHHH
Q psy12642 68 QETWQELCDLYLSEGDYAKAVFCMEELF----------------------LHHPHNHLLHQRYADILYTQGGLENIELAI 125 (201)
Q Consensus 68 ~~~~~~l~~~~~~~~~~~~A~~~~~~al----------------------~~~~~~~~~~~~la~~~~~~~~~~~~~~A~ 125 (201)
-.+|..+|..+..+..|++|.++|.+.- ..-|++...+-.+|..+...| --++|+
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svG---MC~qAV 872 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVG---MCDQAV 872 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhc---hHHHHH
Confidence 3567777777777777777777766432 122455555555555555555 556666
Q ss_pred HHHHH
Q psy12642 126 SHYLM 130 (201)
Q Consensus 126 ~~~~~ 130 (201)
+.|.+
T Consensus 873 ~a~Lr 877 (1189)
T KOG2041|consen 873 EAYLR 877 (1189)
T ss_pred HHHHh
Confidence 55554
No 343
>KOG0890|consensus
Probab=93.95 E-value=1.2 Score=42.50 Aligned_cols=124 Identities=15% Similarity=0.068 Sum_probs=93.2
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC----------
Q psy12642 32 TNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHN---------- 101 (201)
Q Consensus 32 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---------- 101 (201)
.-..+|...|.+....|+++.|...+-.+.+.. -+.+....|...+.+|+...|+..+++.+..+-.+
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~ 1745 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQ 1745 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccch
Confidence 446889999999999999999999888877755 46788899999999999999999999999553221
Q ss_pred -H------HHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhh
Q psy12642 102 -H------LLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKC 158 (201)
Q Consensus 102 -~------~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a 158 (201)
. .+...++...-..+. ..-..-++.|..+.+..|.....++.+|..|.+.-...++
T Consensus 1746 ~~n~~i~~~~~L~~~~~~~es~n-~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~ 1808 (2382)
T KOG0890|consen 1746 SVNLLIFKKAKLKITKYLEESGN-FESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKS 1808 (2382)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhc
Confidence 1 123334444444441 2346778999999999998888888898777765544443
No 344
>KOG0985|consensus
Probab=93.91 E-value=4.5 Score=36.18 Aligned_cols=61 Identities=15% Similarity=0.131 Sum_probs=50.2
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q psy12642 32 TNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLH 97 (201)
Q Consensus 32 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 97 (201)
+.+.+|..+|......|...+|++.|-+ .+||..+.....+..+.|.|++-++++..+.+.
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyik-----adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIK-----ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHh-----cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 4568899999999999999999987755 466777888888888999999999988877654
No 345
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=93.82 E-value=0.27 Score=23.09 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHH
Q psy12642 50 IPEAIKELTEYLKKFMTDQETWQE 73 (201)
Q Consensus 50 ~~~A~~~~~~~~~~~p~~~~~~~~ 73 (201)
.+.+...|++++...|.++.+|..
T Consensus 3 ~~~~r~i~e~~l~~~~~~~~~W~~ 26 (33)
T smart00386 3 IERARKIYERALEKFPKSVELWLK 26 (33)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHH
Confidence 334444444444444444444443
No 346
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=93.81 E-value=3.7 Score=34.80 Aligned_cols=116 Identities=16% Similarity=0.121 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHhcCc----ccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhcCC--CH----HHHHHHHHHHHhcCCH
Q psy12642 16 YEEALEHLETIIKIDE----TNTAARKRKICILK-AKNKIPEAIKELTEYLKKFMT--DQ----ETWQELCDLYLSEGDY 84 (201)
Q Consensus 16 ~~~A~~~~~~~l~~~~----~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~p~--~~----~~~~~l~~~~~~~~~~ 84 (201)
...|+.+++-+++..+ ....+++.+|.+++ +..+++.|..++++++.+... .. .+.+.++.++.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 4457888888885332 23477888999887 789999999999999876533 32 2344578888888877
Q ss_pred HHHHHHHHHHhhcCCC----CHHHHHHHHHH--HHHcCCcccHHHHHHHHHHHHcCC
Q psy12642 85 AKAVFCMEELFLHHPH----NHLLHQRYADI--LYTQGGLENIELAISHYLMAINLN 135 (201)
Q Consensus 85 ~~A~~~~~~al~~~~~----~~~~~~~la~~--~~~~~~~~~~~~A~~~~~~al~~~ 135 (201)
. |...+++.+..... .+...+.+-.+ ....+ ++..|++.++......
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~---d~~~Al~~L~~~~~~a 169 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHK---DYNAALENLQSIAQLA 169 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHh
Confidence 7 99999999976554 33333444322 22336 8999999999888765
No 347
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=93.77 E-value=1.8 Score=32.77 Aligned_cols=66 Identities=15% Similarity=0.006 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHhHH
Q psy12642 104 LHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMW 172 (201)
Q Consensus 104 ~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 172 (201)
.+...+..+...| .+.+|+.+.+++++++|=+...+..+..++..+|+.-.+.....+....+..|
T Consensus 281 llgkva~~yle~g---~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleae 346 (361)
T COG3947 281 LLGKVARAYLEAG---KPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAE 346 (361)
T ss_pred HHHHHHHHHHHcC---ChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHH
Confidence 4455677778889 99999999999999999999999999999999999888877666666554444
No 348
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.73 E-value=0.23 Score=25.12 Aligned_cols=29 Identities=14% Similarity=0.043 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy12642 35 AARKRKICILKAKNKIPEAIKELTEYLKK 63 (201)
Q Consensus 35 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 63 (201)
.++..+|.+....++|++|+..|.+++.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46788999999999999999999999875
No 349
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.71 E-value=1 Score=36.53 Aligned_cols=113 Identities=16% Similarity=-0.008 Sum_probs=80.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHH
Q psy12642 43 ILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIE 122 (201)
Q Consensus 43 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~ 122 (201)
-.+..|+.-.|-.-+..+++..|.+|......+.+....|.|+.|...+..+-..-.....+...+-.-....+ +++
T Consensus 298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~---r~~ 374 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLA---RWR 374 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchh---hHH
Confidence 34567888888888888999999999988889999999999999998886655444333445555556667888 999
Q ss_pred HHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhh
Q psy12642 123 LAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKC 158 (201)
Q Consensus 123 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a 158 (201)
+|...-.-.+.-.-++++...--+-....+|-.+++
T Consensus 375 ~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~ 410 (831)
T PRK15180 375 EALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKS 410 (831)
T ss_pred HHHHHHHHHhccccCChhheeeecccHHHHhHHHHH
Confidence 999888877765545554443333333344444444
No 350
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=93.71 E-value=0.92 Score=32.88 Aligned_cols=62 Identities=15% Similarity=0.082 Sum_probs=52.4
Q ss_pred HHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH
Q psy12642 7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ 68 (201)
Q Consensus 7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~ 68 (201)
+..+.+.+..++++...+.-++.+|.+......+-.+++-.|++++|...++-+-...|++.
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 45677888888999988888888898888888888888888999999888888888888763
No 351
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=93.57 E-value=0.26 Score=24.53 Aligned_cols=33 Identities=24% Similarity=0.285 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHcCCcccHHHHHHH--HHHHHcCCccc
Q psy12642 103 LLHQRYADILYTQGGLENIELAISH--YLMAINLNEKN 138 (201)
Q Consensus 103 ~~~~~la~~~~~~~~~~~~~~A~~~--~~~al~~~p~~ 138 (201)
..+..+|-.++..| ++++|+.. |.-+..++|.|
T Consensus 2 e~~y~~a~~~y~~~---ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKG---KYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHhcccC
Confidence 46788899999999 99999999 54777766653
No 352
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.55 E-value=1.8 Score=30.32 Aligned_cols=103 Identities=14% Similarity=0.047 Sum_probs=75.5
Q ss_pred hhhccCHHHHHHHHHHHHhcCcc--c--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHhcCCH
Q psy12642 10 CFHFFRYEEALEHLETIIKIDET--N--TAARKRKICILKAKNKIPEAIKELTEYLK-KFMTDQETWQELCDLYLSEGDY 84 (201)
Q Consensus 10 ~~~~~~~~~A~~~~~~~l~~~~~--~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~p~~~~~~~~l~~~~~~~~~~ 84 (201)
..+.|+-..|+..|+.+-...|. - ..+...-+.++...|.|++...-.+.+-. .+|-...+...||..-++.|++
T Consensus 104 ~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~ 183 (221)
T COG4649 104 LAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDF 183 (221)
T ss_pred HhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccch
Confidence 45789999999999998765532 1 24556667788889999987766655332 3344456677799999999999
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q psy12642 85 AKAVFCMEELFLHHPHNHLLHQRYADILY 113 (201)
Q Consensus 85 ~~A~~~~~~al~~~~~~~~~~~~la~~~~ 113 (201)
.+|...|.+... +...|......+++..
T Consensus 184 a~A~~~F~qia~-Da~aprnirqRAq~ml 211 (221)
T COG4649 184 AKAKSWFVQIAN-DAQAPRNIRQRAQIML 211 (221)
T ss_pred HHHHHHHHHHHc-cccCcHHHHHHHHHHH
Confidence 999999998776 5556666666666654
No 353
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=93.51 E-value=2.5 Score=31.89 Aligned_cols=133 Identities=9% Similarity=-0.009 Sum_probs=65.7
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcCcc--cHHHHHHHHHHH---HHcCCH----HHHHHHHHHHHHhcCCCHHHHHHHHH
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKIDET--NTAARKRKICIL---KAKNKI----PEAIKELTEYLKKFMTDQETWQELCD 76 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~~a~~~---~~~~~~----~~A~~~~~~~~~~~p~~~~~~~~l~~ 76 (201)
-+..+...++|++=...+++......+ .....+..+... ...... ..-...++..++..|++..++..+|.
T Consensus 6 ~ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~ 85 (277)
T PF13226_consen 6 DIRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGM 85 (277)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHH
Confidence 355677788888888888777653322 111111122111 111111 13556677778888888888777776
Q ss_pred HHHhcCCHHHHHHHHHHHhhc-CCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhh
Q psy12642 77 LYLSEGDYAKAVFCMEELFLH-HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT 154 (201)
Q Consensus 77 ~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 154 (201)
.+....=- -+.-.. +.-....+... .. -.+.|...+.+++.++|....+...+..+....|.
T Consensus 86 ~~~~~Aw~-------~RG~~~A~~V~~~~W~~~------~~---~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fge 148 (277)
T PF13226_consen 86 YWVHRAWD-------IRGSGYASTVTEAQWLGA------HQ---ACDQAVAALLKAIELSPRPVAAAIGMINISAYFGE 148 (277)
T ss_pred HHHHHHHH-------HHccchhcccCHHHHHHH------HH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCC
Confidence 65432100 000000 00001111111 11 34566666666666666666666666655555553
No 354
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=93.50 E-value=0.54 Score=35.49 Aligned_cols=57 Identities=21% Similarity=0.212 Sum_probs=49.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Q psy12642 72 QELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMA 131 (201)
Q Consensus 72 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~a 131 (201)
...+..|...|.+.+|+...+++++.+|-+...+..+-.++...| +--.+++.|++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~g---D~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLG---DEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhc---cchhhhhHHHHH
Confidence 345677889999999999999999999999999999999999999 777777777664
No 355
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.44 E-value=2.8 Score=33.88 Aligned_cols=49 Identities=14% Similarity=-0.012 Sum_probs=21.6
Q ss_pred cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q psy12642 47 KNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELF 95 (201)
Q Consensus 47 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 95 (201)
.|++..|-.+|+-.+..+|+++......-..+...++-+.|...|+.++
T Consensus 445 ~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv 493 (660)
T COG5107 445 TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSV 493 (660)
T ss_pred cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhH
Confidence 3444444444444444444444333333333344444444444444443
No 356
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=93.39 E-value=0.29 Score=22.98 Aligned_cols=29 Identities=28% Similarity=0.382 Sum_probs=17.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q psy12642 82 GDYAKAVFCMEELFLHHPHNHLLHQRYAD 110 (201)
Q Consensus 82 ~~~~~A~~~~~~al~~~~~~~~~~~~la~ 110 (201)
|+.+.+...|++++...|.++..|..++.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 34556666666666666666666655544
No 357
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=93.39 E-value=2.1 Score=33.93 Aligned_cols=57 Identities=19% Similarity=0.157 Sum_probs=41.6
Q ss_pred HHhhhhccCHHHHHHHHHHHHhcCcccHH--HHHH--HHHHHHHcCCHHHHHHHHHHHHHh
Q psy12642 7 IIGCFHFFRYEEALEHLETIIKIDETNTA--ARKR--KICILKAKNKIPEAIKELTEYLKK 63 (201)
Q Consensus 7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~--~~~~--~a~~~~~~~~~~~A~~~~~~~~~~ 63 (201)
+..+++.++|..|.+.++.+...-|.... .+.. .|.-++..-++++|.+.++..+..
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45688899999999999999886333332 2333 345566788899999999987764
No 358
>KOG0985|consensus
Probab=92.94 E-value=6.7 Score=35.21 Aligned_cols=129 Identities=16% Similarity=0.078 Sum_probs=84.2
Q ss_pred HhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----------------------
Q psy12642 8 IGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKF----------------------- 64 (201)
Q Consensus 8 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----------------------- 64 (201)
.+-.+.|...+|++-|-++ +++..+.....+....|.|++-++++.-+.+..
T Consensus 1112 kAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE 1186 (1666)
T KOG0985|consen 1112 KAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELE 1186 (1666)
T ss_pred HHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHH
Confidence 4455667777888777654 556677777888888899998888877655432
Q ss_pred -----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccH
Q psy12642 65 -----MTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNI 139 (201)
Q Consensus 65 -----p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 139 (201)
|+... ....|.-++..|.|+.|.-.|. +..-|..++.++...| +|+.|+..-+++ ++.
T Consensus 1187 ~fi~gpN~A~-i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~Lg---eyQ~AVD~aRKA-----ns~ 1249 (1666)
T KOG0985|consen 1187 EFIAGPNVAN-IQQVGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYLG---EYQGAVDAARKA-----NST 1249 (1666)
T ss_pred HHhcCCCchh-HHHHhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHHH---HHHHHHHHhhhc-----cch
Confidence 11111 1234555666666666666554 3445778888889999 999998888776 445
Q ss_pred HHHHHHHHHHHHhhhhhhh
Q psy12642 140 RALYGLALSCHQVLTSAKC 158 (201)
Q Consensus 140 ~~~~~l~~~~~~~~~~~~a 158 (201)
+.|.....++...+.+.-|
T Consensus 1250 ktWK~VcfaCvd~~EFrlA 1268 (1666)
T KOG0985|consen 1250 KTWKEVCFACVDKEEFRLA 1268 (1666)
T ss_pred hHHHHHHHHHhchhhhhHH
Confidence 5565555555555544444
No 359
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=92.83 E-value=2.6 Score=31.22 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=11.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHh
Q psy12642 73 ELCDLYLSEGDYAKAVFCMEELF 95 (201)
Q Consensus 73 ~l~~~~~~~~~~~~A~~~~~~al 95 (201)
.+|.-|+..|++++|+..|+.+.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~ 205 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAA 205 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444444455555554444443
No 360
>PF12854 PPR_1: PPR repeat
Probab=92.70 E-value=0.47 Score=23.14 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12642 67 DQETWQELCDLYLSEGDYAKAVFCMEE 93 (201)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~A~~~~~~ 93 (201)
|...|..+-..|.+.|+.++|.+.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 344555666666666666666666654
No 361
>KOG0546|consensus
Probab=92.60 E-value=0.17 Score=38.90 Aligned_cols=78 Identities=14% Similarity=0.015 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Q psy12642 70 TWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSC 149 (201)
Q Consensus 70 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 149 (201)
....++.+-++.+.+..|+..-..++..++....+++..+..+.... ++++|++.++.+....|++......+..+-
T Consensus 277 ~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~---~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~ 353 (372)
T KOG0546|consen 277 IRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLK---NYDEALEDLKKAKQKAPNDKAIEEELENVR 353 (372)
T ss_pred cccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhh---chhhhHHHHHHhhccCcchHHHHHHHHHhh
Confidence 34446777788889999988888888888888889999999999999 999999999999999999876554444333
Q ss_pred H
Q psy12642 150 H 150 (201)
Q Consensus 150 ~ 150 (201)
.
T Consensus 354 ~ 354 (372)
T KOG0546|consen 354 Q 354 (372)
T ss_pred h
Confidence 3
No 362
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.54 E-value=6.8 Score=34.28 Aligned_cols=94 Identities=11% Similarity=-0.009 Sum_probs=67.3
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcc--c-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-----HH
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDET--N-------TAARKRKICILKAKNKIPEAIKELTEYLKKFMTD-----QE 69 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~ 69 (201)
|+++..+....++++|..++.++...-|. . ....-..+.+....|+++.|++..+.++..-|.+ ..
T Consensus 419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~ 498 (894)
T COG2909 419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV 498 (894)
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence 44666677788888888888877664332 1 1344455777778888888888888888877665 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q psy12642 70 TWQELCDLYLSEGDYAKAVFCMEELFLH 97 (201)
Q Consensus 70 ~~~~l~~~~~~~~~~~~A~~~~~~al~~ 97 (201)
+...+|.+..-.|++++|..+..++.+.
T Consensus 499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 499 ALSVLGEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred hhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence 5556777888888888888888777765
No 363
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=92.53 E-value=1.2 Score=35.52 Aligned_cols=62 Identities=16% Similarity=0.067 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-------H-hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q psy12642 35 AARKRKICILKAKNKIPEAIKELTEYL-------K-KFMTDQETWQELCDLYLSEGDYAKAVFCMEELFL 96 (201)
Q Consensus 35 ~~~~~~a~~~~~~~~~~~A~~~~~~~~-------~-~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 96 (201)
.....+..++..+|||..|++.++-.- . ..+-....++..|-+|+.+++|.+|+..|...+.
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566778888999999999886521 1 1222355788899999999999999999998773
No 364
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.16 E-value=2.5 Score=34.28 Aligned_cols=102 Identities=20% Similarity=0.157 Sum_probs=64.9
Q ss_pred hhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHH
Q psy12642 10 CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVF 89 (201)
Q Consensus 10 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 89 (201)
+.++|-++.|+.+- +++... -.+..+.|+.+.|.+...+ .+++..|..+|...+.+|+++-|..
T Consensus 305 L~~~G~~e~AL~~~--------~D~~~r---FeLAl~lg~L~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~ 368 (443)
T PF04053_consen 305 LEKKGYPELALQFV--------TDPDHR---FELALQLGNLDIALEIAKE-----LDDPEKWKQLGDEALRQGNIELAEE 368 (443)
T ss_dssp HHHTT-HHHHHHHS--------S-HHHH---HHHHHHCT-HHHHHHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHH
T ss_pred HHHCCCHHHHHhhc--------CChHHH---hHHHHhcCCHHHHHHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 45567777666542 334444 3456789999999875543 4578899999999999999999999
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCccc
Q psy12642 90 CMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN 138 (201)
Q Consensus 90 ~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 138 (201)
+|+++-. +..+..+|...| +.+.-.+....+......+
T Consensus 369 c~~k~~d--------~~~L~lLy~~~g---~~~~L~kl~~~a~~~~~~n 406 (443)
T PF04053_consen 369 CYQKAKD--------FSGLLLLYSSTG---DREKLSKLAKIAEERGDIN 406 (443)
T ss_dssp HHHHCT---------HHHHHHHHHHCT----HHHHHHHHHHHHHTT-HH
T ss_pred HHHhhcC--------ccccHHHHHHhC---CHHHHHHHHHHHHHccCHH
Confidence 9987531 344444555566 6555555555555544433
No 365
>KOG2422|consensus
Probab=91.67 E-value=7 Score=32.58 Aligned_cols=130 Identities=16% Similarity=0.027 Sum_probs=85.4
Q ss_pred HHhhhhccCHHHHHHHHHHHHhc-----C----------------cccH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy12642 7 IIGCFHFFRYEEALEHLETIIKI-----D----------------ETNT---AARKRKICILKAKNKIPEAIKELTEYLK 62 (201)
Q Consensus 7 ~~~~~~~~~~~~A~~~~~~~l~~-----~----------------~~~~---~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 62 (201)
+..+..+|+.+.|-...++++=. . |.+- -+++.....+-..|-+..|.++.+-.++
T Consensus 291 a~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKllls 370 (665)
T KOG2422|consen 291 ADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLS 370 (665)
T ss_pred HHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Confidence 34456688888888777776532 1 2222 2233344455667999999999999999
Q ss_pred hcCC-CHHHHHHHHHHH-HhcCCHHHHHHHHHHHhhc-----CCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCC
Q psy12642 63 KFMT-DQETWQELCDLY-LSEGDYAKAVFCMEELFLH-----HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLN 135 (201)
Q Consensus 63 ~~p~-~~~~~~~l~~~~-~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~ 135 (201)
++|. ||-+...+-.+| ++..+|+=-+..++..-.. .|+ ...-..++..+........-+.|...+.+|+...
T Consensus 371 Ldp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN-~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~ 449 (665)
T KOG2422|consen 371 LDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPN-FGYSLALARFFLRKNEEDDRQSALNALLQALKHH 449 (665)
T ss_pred cCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCC-chHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhC
Confidence 9998 777666655554 4677888777777776333 343 3333445555555542223678899999999988
Q ss_pred cc
Q psy12642 136 EK 137 (201)
Q Consensus 136 p~ 137 (201)
|.
T Consensus 450 P~ 451 (665)
T KOG2422|consen 450 PL 451 (665)
T ss_pred cH
Confidence 84
No 366
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=91.67 E-value=2.3 Score=30.93 Aligned_cols=62 Identities=23% Similarity=0.221 Sum_probs=54.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHH
Q psy12642 42 CILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHL 103 (201)
Q Consensus 42 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 103 (201)
.-+...+...+++...+.-++..|.+......+-.++.-.|+|++|..-++-+-.+.|++..
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 34667789999999999999999999988888889999999999999999999999987543
No 367
>KOG0890|consensus
Probab=91.58 E-value=11 Score=36.67 Aligned_cols=146 Identities=14% Similarity=0.061 Sum_probs=96.1
Q ss_pred HHHhhhhccCHHHHHHHHHHHH-hcCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q psy12642 6 YIIGCFHFFRYEEALEHLETII-KIDET--NTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG 82 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l-~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 82 (201)
.+..=+..+.|.+|+-++++-. ...+. ....+..+-.+|...++++.......... ..|+ + ...-..+...|
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-a~~s---l-~~qil~~e~~g 1463 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-ADPS---L-YQQILEHEASG 1463 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-cCcc---H-HHHHHHHHhhc
Confidence 4455567889999999998841 11111 12334445558888898888766655411 2221 2 22334566789
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHH-HHHHHhhhhhhhh
Q psy12642 83 DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLA-LSCHQVLTSAKCS 159 (201)
Q Consensus 83 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~-~~~~~~~~~~~a~ 159 (201)
++..|..+|+++++.+|+....+...-...+..+ .++..+-..+-.....++...-|..++ .+.-+.++++.-.
T Consensus 1464 ~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~---~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1464 NWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQ---HLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred cHHHHHHHHHHhhcCCCccccchhhHHHhhhccc---chhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhh
Confidence 9999999999999999998877777777777778 888888888777766666555444433 2334555555553
No 368
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=91.47 E-value=2.8 Score=27.56 Aligned_cols=44 Identities=9% Similarity=-0.009 Sum_probs=22.4
Q ss_pred HHHHHHHHHHH--hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q psy12642 52 EAIKELTEYLK--KFMTDQETWQELCDLYLSEGDYAKAVFCMEELF 95 (201)
Q Consensus 52 ~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 95 (201)
.+.++|..... +.-..+..|...|..+...|++++|.++|+.+|
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 44444444443 233345555555566666666666666655543
No 369
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.32 E-value=2.5 Score=31.78 Aligned_cols=136 Identities=11% Similarity=0.075 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH------HhcCCHHHH
Q psy12642 16 YEEALEHLETIIKIDETNTAARKRKICILKAK--NKIPEAIKELTEYLKKFMTDQETWQELCDLY------LSEGDYAKA 87 (201)
Q Consensus 16 ~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~------~~~~~~~~A 87 (201)
.+.-+.++..+++.+|.+..+|..+-.++... .++..-..+.++.++.+|.+.-+|...-.+. ..-..+..-
T Consensus 90 ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e 169 (328)
T COG5536 90 LDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHE 169 (328)
T ss_pred hhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHH
Confidence 34456778889999999999998887777665 5677778888999999999877776533222 333344555
Q ss_pred HHHHHHHhhcCCCCHHHHHHH---HHHHHHcCCc---ccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH
Q psy12642 88 VFCMEELFLHHPHNHLLHQRY---ADILYTQGGL---ENIELAISHYLMAINLNEKNIRALYGLALSCHQ 151 (201)
Q Consensus 88 ~~~~~~al~~~~~~~~~~~~l---a~~~~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 151 (201)
.++-..+|..++.|..+|... -...+..|+. .-+++-+++.-.++-.+|++..+|..+-.+...
T Consensus 170 ~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~~~~ 239 (328)
T COG5536 170 LEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGVSSE 239 (328)
T ss_pred HHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHHhcc
Confidence 666778888999999888776 3333344421 126677888888888999998888776665554
No 370
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=91.07 E-value=4.7 Score=29.86 Aligned_cols=80 Identities=15% Similarity=0.028 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHhcCc------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhcCC
Q psy12642 16 YEEALEHLETIIKIDE------TNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD------QETWQELCDLYLSEGD 83 (201)
Q Consensus 16 ~~~A~~~~~~~l~~~~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~ 83 (201)
-...++.+.++.+.-. ....+...+|..|+..|++++|+++++.+....... ..+...+..|+...|+
T Consensus 154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~ 233 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGD 233 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence 3345666666665432 223555678999999999999999999987654332 3455567788888999
Q ss_pred HHHHHHHHHHHh
Q psy12642 84 YAKAVFCMEELF 95 (201)
Q Consensus 84 ~~~A~~~~~~al 95 (201)
.+..+.+.-+++
T Consensus 234 ~~~~l~~~leLl 245 (247)
T PF11817_consen 234 VEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHh
Confidence 888877665543
No 371
>KOG0276|consensus
Probab=90.67 E-value=4.9 Score=33.71 Aligned_cols=66 Identities=17% Similarity=0.231 Sum_probs=44.3
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q psy12642 22 HLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFL 96 (201)
Q Consensus 22 ~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 96 (201)
+.+++++..++.. ..-.+..+.|+++.|..+..+ .++..-|..||.+....+++..|.++|.++-.
T Consensus 629 ~~e~AL~~s~D~d----~rFelal~lgrl~iA~~la~e-----~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 629 MKEQALELSTDPD----QRFELALKLGRLDIAFDLAVE-----ANSEVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred chHhhhhcCCChh----hhhhhhhhcCcHHHHHHHHHh-----hcchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 3444454444332 223345567777777654433 45667899999999999999999999988754
No 372
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=90.65 E-value=0.8 Score=23.96 Aligned_cols=25 Identities=12% Similarity=-0.005 Sum_probs=16.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q psy12642 38 KRKICILKAKNKIPEAIKELTEYLK 62 (201)
Q Consensus 38 ~~~a~~~~~~~~~~~A~~~~~~~~~ 62 (201)
+.++..|..+|+.+.|.+.+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3456666666666666666666663
No 373
>PF12854 PPR_1: PPR repeat
Probab=90.50 E-value=0.96 Score=22.02 Aligned_cols=27 Identities=15% Similarity=0.111 Sum_probs=21.6
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12642 33 NTAARKRKICILKAKNKIPEAIKELTE 59 (201)
Q Consensus 33 ~~~~~~~~a~~~~~~~~~~~A~~~~~~ 59 (201)
+...+..+...+.+.|+.++|.+.+++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 456777788888899999999888765
No 374
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=90.41 E-value=0.85 Score=36.26 Aligned_cols=56 Identities=16% Similarity=0.041 Sum_probs=44.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhh--------cCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Q psy12642 74 LCDLYLSEGDYAKAVFCMEELFL--------HHPHNHLLHQRYADILYTQGGLENIELAISHYLMAI 132 (201)
Q Consensus 74 l~~~~~~~~~~~~A~~~~~~al~--------~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al 132 (201)
+.+++.-.|+|..|++.++..-- ..+-...+++.+|.+|..++ +|.+|++.|...+
T Consensus 128 LlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlr---RY~DAir~f~~iL 191 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLR---RYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 45678889999999999875421 12234457899999999999 9999999999876
No 375
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=89.90 E-value=5.6 Score=31.31 Aligned_cols=44 Identities=27% Similarity=0.137 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12642 50 IPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEE 93 (201)
Q Consensus 50 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 93 (201)
.-+|+.+++.++...|.+......+..+|...|-.+.|...|..
T Consensus 199 l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 199 LLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 34566666777777777777777777777777777777776654
No 376
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=89.84 E-value=2.3 Score=28.55 Aligned_cols=54 Identities=13% Similarity=-0.095 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhh
Q psy12642 102 HLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKC 158 (201)
Q Consensus 102 ~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a 158 (201)
.......+...+..| ++.-|......++..+|++..+....+.++.++|.....
T Consensus 70 ~d~vl~~A~~~~~~g---d~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~ 123 (141)
T PF14863_consen 70 ADKVLERAQAALAAG---DYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSEN 123 (141)
T ss_dssp HHHHHHHHHHHHHCT----HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SS
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccC
Confidence 344455555566666 777777777777777777777777777777776655444
No 377
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=89.79 E-value=4.2 Score=26.89 Aligned_cols=120 Identities=18% Similarity=0.091 Sum_probs=71.8
Q ss_pred hhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHH
Q psy12642 9 GCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAV 88 (201)
Q Consensus 9 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~ 88 (201)
.+.+.+.+...+.+++.++..++.++..+..+..+|... +..+.+..+.. .++..+ ....+.++.+.+-+++++
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~~----~~~~yd-~~~~~~~c~~~~l~~~~~ 89 (140)
T smart00299 16 LFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLDN----KSNHYD-IEKVGKLCEKAKLYEEAV 89 (140)
T ss_pred HHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHHh----ccccCC-HHHHHHHHHHcCcHHHHH
Confidence 344567899999999999998888888888888888764 34555555552 111111 112344555666666666
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHH-HcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Q psy12642 89 FCMEELFLHHPHNHLLHQRYADILY-TQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH 150 (201)
Q Consensus 89 ~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 150 (201)
..+.+. .....+. .++. ..+ +++.|++++.+ ++++..|..++..+.
T Consensus 90 ~l~~k~----~~~~~Al----~~~l~~~~---d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 90 ELYKKD----GNFKDAI----VTLIEHLG---NYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HHHHhh----cCHHHHH----HHHHHccc---CHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 666542 1211111 1122 226 78888888775 235666766665543
No 378
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=89.50 E-value=10 Score=30.86 Aligned_cols=101 Identities=23% Similarity=0.178 Sum_probs=64.4
Q ss_pred hhccCHHHHHHHHHHHHhcCcccH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHH
Q psy12642 11 FHFFRYEEALEHLETIIKIDETNT-AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVF 89 (201)
Q Consensus 11 ~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 89 (201)
.-.++++++....... +.-|.-+ .-....+..+...|-++.|+.. ..|+...+.|+ .+.|+.+.|.+
T Consensus 272 v~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~--------~~D~~~rFeLA---l~lg~L~~A~~ 339 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQF--------VTDPDHRFELA---LQLGNLDIALE 339 (443)
T ss_dssp HHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHH--------SS-HHHHHHHH---HHCT-HHHHHH
T ss_pred HHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhh--------cCChHHHhHHH---HhcCCHHHHHH
Confidence 4468899987776521 1223333 3344566667778888877643 34566666655 68999999987
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Q psy12642 90 CMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMA 131 (201)
Q Consensus 90 ~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~a 131 (201)
..+ ..+++..|..+|......| +++-|.++|+++
T Consensus 340 ~a~-----~~~~~~~W~~Lg~~AL~~g---~~~lAe~c~~k~ 373 (443)
T PF04053_consen 340 IAK-----ELDDPEKWKQLGDEALRQG---NIELAEECYQKA 373 (443)
T ss_dssp HCC-----CCSTHHHHHHHHHHHHHTT---BHHHHHHHHHHC
T ss_pred HHH-----hcCcHHHHHHHHHHHHHcC---CHHHHHHHHHhh
Confidence 653 4457889999999999999 999999999985
No 379
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.90 E-value=1.4 Score=23.11 Aligned_cols=23 Identities=22% Similarity=0.112 Sum_probs=11.5
Q ss_pred HHHHHHHHcCCcccHHHHHHHHHHHH
Q psy12642 107 RYADILYTQGGLENIELAISHYLMAI 132 (201)
Q Consensus 107 ~la~~~~~~~~~~~~~~A~~~~~~al 132 (201)
.+|.+|..+| +.+.|.+.++.++
T Consensus 4 dLA~ayie~G---d~e~Ar~lL~evl 26 (44)
T TIGR03504 4 DLARAYIEMG---DLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHHcC---ChHHHHHHHHHHH
Confidence 3444555555 5555555555544
No 380
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=88.47 E-value=8.7 Score=28.75 Aligned_cols=25 Identities=12% Similarity=-0.008 Sum_probs=12.6
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHH
Q psy12642 33 NTAARKRKICILKAKNKIPEAIKEL 57 (201)
Q Consensus 33 ~~~~~~~~a~~~~~~~~~~~A~~~~ 57 (201)
++..+..+|..+++.|++.+|..++
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 3455555555555555555555444
No 381
>KOG0128|consensus
Probab=88.47 E-value=16 Score=31.86 Aligned_cols=118 Identities=13% Similarity=0.084 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH--H-hcCCHHHHHHHHHH
Q psy12642 17 EEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLY--L-SEGDYAKAVFCMEE 93 (201)
Q Consensus 17 ~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~--~-~~~~~~~A~~~~~~ 93 (201)
++=+..++.-+..++.+...+..+..++...|++++....-.+...+.|.++..|.....-. + ..++..++...|++
T Consensus 96 ~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ek 175 (881)
T KOG0128|consen 96 NQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEK 175 (881)
T ss_pred hhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHH
Confidence 34456667777788888888899999999999999988888888889999999998765433 2 33677888888999
Q ss_pred HhhcCCCCHHHHHHHHHHHHHcCC----cccHHHHHHHHHHHHcCC
Q psy12642 94 LFLHHPHNHLLHQRYADILYTQGG----LENIELAISHYLMAINLN 135 (201)
Q Consensus 94 al~~~~~~~~~~~~la~~~~~~~~----~~~~~~A~~~~~~al~~~ 135 (201)
++. +-+++..|...+......++ .++++.....|.+++..-
T Consensus 176 al~-dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~ 220 (881)
T KOG0128|consen 176 ALG-DYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSL 220 (881)
T ss_pred Hhc-ccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhh
Confidence 885 44446666666555443331 137888888888888654
No 382
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=88.30 E-value=6.8 Score=29.61 Aligned_cols=131 Identities=14% Similarity=0.112 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHH----c----CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc--CCHHH
Q psy12642 17 EEALEHLETIIKIDETNTAARKRKICILKA----K----NKIPEAIKELTEYLKKFMTDQETWQELCDLYLSE--GDYAK 86 (201)
Q Consensus 17 ~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~----~----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--~~~~~ 86 (201)
..|++.-...+..+|....+|...-.+... . .-.+.-+..+..+++.+|.+..+|...-.+...- .++..
T Consensus 49 ~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~r 128 (328)
T COG5536 49 VRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGR 128 (328)
T ss_pred HHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccch
Confidence 457777777788888888777776665544 1 1235567788889999999999888765554433 56888
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHH------HHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Q psy12642 87 AVFCMEELFLHHPHNHLLHQRYADIL------YTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH 150 (201)
Q Consensus 87 A~~~~~~al~~~~~~~~~~~~la~~~------~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 150 (201)
-....++.+..+|.|.-+|...--+. ..-. .+....++-...+..++.|..+|........
T Consensus 129 El~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S---~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~ 195 (328)
T COG5536 129 ELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFS---DLKHELEYTTSLIETDIYNNSAWHHRYIWIE 195 (328)
T ss_pred hHHHHHHHhcccccccceeeeEeeeeecchhhccch---hHHHHHHhHHHHHhhCCCChHHHHHHHHHHH
Confidence 88888999999999877665443332 2223 5666678888899999999999988744333
No 383
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=88.27 E-value=17 Score=31.95 Aligned_cols=149 Identities=13% Similarity=0.052 Sum_probs=102.6
Q ss_pred HHhhhhccCHHHHHHHHHHH---Hhc-------------Cc-----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q psy12642 7 IIGCFHFFRYEEALEHLETI---IKI-------------DE-----TNTAARKRKICILKAKNKIPEAIKELTEYLKKFM 65 (201)
Q Consensus 7 ~~~~~~~~~~~~A~~~~~~~---l~~-------------~~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p 65 (201)
|......|+++.|...+++. +-. -| ++|......+.......++.+|..++.++-..-|
T Consensus 367 I~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~ 446 (894)
T COG2909 367 IDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLK 446 (894)
T ss_pred HHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhC
Confidence 34445667888887777776 111 12 2345555667777888999999999888766443
Q ss_pred C--C-------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCH-----HHHHHHHHHHHHcCCcccHHHHHHHHHHH
Q psy12642 66 T--D-------QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNH-----LLHQRYADILYTQGGLENIELAISHYLMA 131 (201)
Q Consensus 66 ~--~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~la~~~~~~~~~~~~~~A~~~~~~a 131 (201)
. . ....-..|.+....|++++|.+..+.++..-|.+. .+...+|.+....| +++.|..+...+
T Consensus 447 ~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G---~~~~Al~~~~~a 523 (894)
T COG2909 447 APMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRG---ELTQALALMQQA 523 (894)
T ss_pred cCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhc---hHHHHHHHHHHH
Confidence 3 1 22333457788899999999999999998877653 46778899999999 999999999988
Q ss_pred HcCCc----ccH--HHHHHHHHHHHHhhhhhhh
Q psy12642 132 INLNE----KNI--RALYGLALSCHQVLTSAKC 158 (201)
Q Consensus 132 l~~~p----~~~--~~~~~l~~~~~~~~~~~~a 158 (201)
.+... ... .+....+.+....|+...+
T Consensus 524 ~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a 556 (894)
T COG2909 524 EQMARQHDVYHLALWSLLQQSEILEAQGQVARA 556 (894)
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 77632 222 2334456666777744333
No 384
>KOG3807|consensus
Probab=88.21 E-value=11 Score=29.47 Aligned_cols=29 Identities=14% Similarity=0.021 Sum_probs=20.9
Q ss_pred HHHHHHHHHHcCCcccHHHHHHHHHHHHcCCc
Q psy12642 105 HQRYADILYTQGGLENIELAISHYLMAINLNE 136 (201)
Q Consensus 105 ~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p 136 (201)
...++.|..+.| +..+|++.++...+-.|
T Consensus 278 KRRLAMCARklG---rlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 278 KRRLAMCARKLG---RLREAVKIMRDLMKEFP 306 (556)
T ss_pred HHHHHHHHHHhh---hHHHHHHHHHHHhhhcc
Confidence 356777777777 78888887777666555
No 385
>KOG1538|consensus
Probab=88.14 E-value=3.8 Score=34.72 Aligned_cols=113 Identities=15% Similarity=0.015 Sum_probs=62.1
Q ss_pred HHHHhhhhccCHHHHHHHH----------HHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q psy12642 5 VYIIGCFHFFRYEEALEHL----------ETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74 (201)
Q Consensus 5 ~~~~~~~~~~~~~~A~~~~----------~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 74 (201)
+.+..+...|+.++|+.+. +-..+.+..+...+...+..+.....+.-|.++|.+.-. ...+
T Consensus 708 aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksi 779 (1081)
T KOG1538|consen 708 AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSL 779 (1081)
T ss_pred HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHH
Confidence 4455666777777777643 111222333333444444444444444444444443211 1123
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Q psy12642 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMA 131 (201)
Q Consensus 75 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~a 131 (201)
.+.+...++|++|....++.=+.- +.+++..|+.+.... ++++|.+.|-++
T Consensus 780 VqlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~D---rFeEAqkAfhkA 830 (1081)
T KOG1538|consen 780 VQLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAEND---RFEEAQKAFHKA 830 (1081)
T ss_pred hhheeecccchHhHhhhhhCcccc---ccccchHHHHhhhhh---hHHHHHHHHHHh
Confidence 456667788888877666533333 336677777777777 777777777665
No 386
>KOG2581|consensus
Probab=88.08 E-value=12 Score=29.92 Aligned_cols=95 Identities=11% Similarity=0.029 Sum_probs=64.9
Q ss_pred HhhhhccCHHHHHHHHHHHHhcC------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hcCCC--HHHHHHHHHH
Q psy12642 8 IGCFHFFRYEEALEHLETIIKID------ETNTAARKRKICILKAKNKIPEAIKELTEYLK--KFMTD--QETWQELCDL 77 (201)
Q Consensus 8 ~~~~~~~~~~~A~~~~~~~l~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~--~~~~~~l~~~ 77 (201)
..+...|+...-..++...+... ..-......+-..|...+.++.|.....+..- ...++ ....+.+|.+
T Consensus 177 l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrI 256 (493)
T KOG2581|consen 177 LSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRI 256 (493)
T ss_pred HHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhH
Confidence 44555666555555555554421 12234455666778888999999888776542 11122 4566778999
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCH
Q psy12642 78 YLSEGDYAKAVFCMEELFLHHPHNH 102 (201)
Q Consensus 78 ~~~~~~~~~A~~~~~~al~~~~~~~ 102 (201)
..-+++|..|.++|-+++...|.+.
T Consensus 257 kaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 257 KAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHhhcchhHHHHHHHHHHHhCcchh
Confidence 9999999999999999999999743
No 387
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=88.02 E-value=6 Score=26.44 Aligned_cols=119 Identities=13% Similarity=0.057 Sum_probs=67.0
Q ss_pred hhhhccCHHHHHHHHHHHHhcCcccH------------------HHHHHHHHHHH--HcCCHHHHHHHHHHHHHhcCCCH
Q psy12642 9 GCFHFFRYEEALEHLETIIKIDETNT------------------AARKRKICILK--AKNKIPEAIKELTEYLKKFMTDQ 68 (201)
Q Consensus 9 ~~~~~~~~~~A~~~~~~~l~~~~~~~------------------~~~~~~a~~~~--~~~~~~~A~~~~~~~~~~~p~~~ 68 (201)
.+.-.|..++..+...+.....+-.. .++-.+|.++- ..|+....+.++-.. + .+.
T Consensus 11 ~~ildG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~---n-~~s 86 (161)
T PF09205_consen 11 ERILDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKR---N-KLS 86 (161)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHT---T----
T ss_pred HHHHhchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHh---c-chH
Confidence 34556888888888888776554322 11222233221 235566555555431 1 122
Q ss_pred HHHHHHH-HHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCC
Q psy12642 69 ETWQELC-DLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLN 135 (201)
Q Consensus 69 ~~~~~l~-~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~ 135 (201)
+ +..++ .+...+|+-++--+.++...+.+..+|..+..+|.+|.+.| +..++-+.+.+|.+..
T Consensus 87 e-~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg---~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 87 E-YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLG---NTREANELLKEACEKG 150 (161)
T ss_dssp H-HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT----HHHHHHHHHHHHHTT
T ss_pred H-HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhc---chhhHHHHHHHHHHhc
Confidence 2 22333 44557777777777777777666777889999999999999 9999999999888764
No 388
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=87.77 E-value=8.2 Score=27.62 Aligned_cols=55 Identities=13% Similarity=0.094 Sum_probs=30.6
Q ss_pred hhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHh
Q psy12642 9 GCFHFFRYEEALEHLETIIKIDETNTAARKRKIC-ILKAKNKIPEAIKELTEYLKK 63 (201)
Q Consensus 9 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~-~~~~~~~~~~A~~~~~~~~~~ 63 (201)
.+...|+++.|-..|--++...+-+....-.+|. ++...+.-....++++.....
T Consensus 50 ~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~ 105 (199)
T PF04090_consen 50 LCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISF 105 (199)
T ss_pred HHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHH
Confidence 3455678888888887777766555544444433 444444444433444444433
No 389
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=87.57 E-value=3.6 Score=27.63 Aligned_cols=51 Identities=27% Similarity=0.301 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcC
Q psy12642 66 TDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQG 116 (201)
Q Consensus 66 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 116 (201)
...+.....+.-.+..|++.-|....+.++..+|+|..+....+.++...+
T Consensus 68 GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 68 GGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 345566677888889999999999999999999999999999999888877
No 390
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=87.54 E-value=3 Score=24.66 Aligned_cols=17 Identities=18% Similarity=0.165 Sum_probs=7.4
Q ss_pred HHhcCCHHHHHHHHHHH
Q psy12642 78 YLSEGDYAKAVFCMEEL 94 (201)
Q Consensus 78 ~~~~~~~~~A~~~~~~a 94 (201)
+-..|++++|+.+|+++
T Consensus 16 ~D~~gr~~eAi~~Y~~a 32 (75)
T cd02682 16 AEKEGNAEDAITNYKKA 32 (75)
T ss_pred HHhcCCHHHHHHHHHHH
Confidence 33444444444444433
No 391
>PF13041 PPR_2: PPR repeat family
Probab=87.17 E-value=3 Score=22.02 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=10.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Q psy12642 71 WQELCDLYLSEGDYAKAVFCMEELF 95 (201)
Q Consensus 71 ~~~l~~~~~~~~~~~~A~~~~~~al 95 (201)
|..+-..|.+.|++++|.+.|++..
T Consensus 6 yn~li~~~~~~~~~~~a~~l~~~M~ 30 (50)
T PF13041_consen 6 YNTLISGYCKAGKFEEALKLFKEMK 30 (50)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3333344444444444444444444
No 392
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=86.46 E-value=1.7 Score=19.97 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=12.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHh
Q psy12642 72 QELCDLYLSEGDYAKAVFCMEELF 95 (201)
Q Consensus 72 ~~l~~~~~~~~~~~~A~~~~~~al 95 (201)
..+-..|.+.|++++|...|++..
T Consensus 4 ~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 4 NSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHccchHHHHHHHHHHHh
Confidence 334445555555555555555443
No 393
>KOG1463|consensus
Probab=86.04 E-value=15 Score=28.77 Aligned_cols=158 Identities=18% Similarity=0.057 Sum_probs=97.0
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcC------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CCCHH--HHH
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKID------ETNTAARKRKICILKAKNKIPEAIKELTEYLKKF-----MTDQE--TWQ 72 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~--~~~ 72 (201)
.+..|++.++|.+|+......+..- +.-..++..-..+|+...+..+|...+..+.... |.-.. .=.
T Consensus 134 li~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDL 213 (411)
T KOG1463|consen 134 LIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDL 213 (411)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHH
Confidence 3455788899999998877776532 2334566666778888888888877776655422 11111 112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCC---CCHHHHH---HHHHHHHHcCCcccHH--HHHHHHHHHHcCCcccHHHHHH
Q psy12642 73 ELCDLYLSEGDYAKAVFCMEELFLHHP---HNHLLHQ---RYADILYTQGGLENIE--LAISHYLMAINLNEKNIRALYG 144 (201)
Q Consensus 73 ~l~~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~---~la~~~~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~ 144 (201)
.-|.++....+|.-|..+|-++++-.. +++.+.. ++-.+-...+ ..+ .++-.-+.+++....+..+...
T Consensus 214 qSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln---~~ddv~~lls~K~~l~y~g~~i~Amka 290 (411)
T KOG1463|consen 214 QSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLN---LPDDVAALLSAKLALKYAGRDIDAMKA 290 (411)
T ss_pred hccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhc---CHHHHHHHHhhHHHHhccCcchHHHHH
Confidence 236667777889999999988886432 2233322 2222223334 333 3444445566666677888888
Q ss_pred HHHHHHH--hhhhhhhhhhhHHHH
Q psy12642 145 LALSCHQ--VLTSAKCSAAKKKEI 166 (201)
Q Consensus 145 l~~~~~~--~~~~~~a~~~~~~~~ 166 (201)
++.++.+ +.++.+|..+.+.+.
T Consensus 291 vAeA~~nRSLkdF~~AL~~yk~eL 314 (411)
T KOG1463|consen 291 VAEAFGNRSLKDFEKALADYKKEL 314 (411)
T ss_pred HHHHhcCCcHHHHHHHHHHhHHHH
Confidence 8888764 667777776665553
No 394
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=85.58 E-value=16 Score=28.79 Aligned_cols=44 Identities=25% Similarity=0.313 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHH
Q psy12642 84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLM 130 (201)
Q Consensus 84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~ 130 (201)
.-+|+..++.++..+|.|......+..+|...| -.+.|...|..
T Consensus 199 l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG---~~~~A~~~~~~ 242 (365)
T PF09797_consen 199 LLQAIALLEHALKKSPHNYQLKLLLVRLYSLLG---AGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHh
Confidence 456777778888888888888888888888888 77777777754
No 395
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=85.16 E-value=1.2 Score=32.47 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=15.3
Q ss_pred cHHHHHHHHHHHHcCCccc
Q psy12642 120 NIELAISHYLMAINLNEKN 138 (201)
Q Consensus 120 ~~~~A~~~~~~al~~~p~~ 138 (201)
+...|+.++++|++++|+.
T Consensus 193 ~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 193 TLQLALALLQRAFQLNDKC 211 (230)
T ss_pred cHHHHHHHHHHHHHhCCCC
Confidence 7788888888888888763
No 396
>PF13041 PPR_2: PPR repeat family
Probab=85.11 E-value=4 Score=21.52 Aligned_cols=30 Identities=23% Similarity=0.180 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy12642 34 TAARKRKICILKAKNKIPEAIKELTEYLKK 63 (201)
Q Consensus 34 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 63 (201)
...|..+...+.+.|++++|.+.|++..+.
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 345666667777777777777777776664
No 397
>KOG1839|consensus
Probab=84.75 E-value=11 Score=34.54 Aligned_cols=125 Identities=15% Similarity=0.085 Sum_probs=89.8
Q ss_pred HHhhhhccCHHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------cCCCHHH
Q psy12642 7 IIGCFHFFRYEEALEHLETIIKID--------ETNTAARKRKICILKAKNKIPEAIKELTEYLKK--------FMTDQET 70 (201)
Q Consensus 7 ~~~~~~~~~~~~A~~~~~~~l~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~ 70 (201)
+.-+...+++++|+..-.++.-.. |+....+..++...+..++...|...+.++... .|.....
T Consensus 980 a~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~ 1059 (1236)
T KOG1839|consen 980 AKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALS 1059 (1236)
T ss_pred HHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhh
Confidence 344667889999998777665432 555677778888888888888999988887763 3444556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCC--------CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcC
Q psy12642 71 WQELCDLYLSEGDYAKAVFCMEELFLHHP--------HNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134 (201)
Q Consensus 71 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~--------~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~ 134 (201)
...++.++...++++.|+.+.+.|+.... .+...+..+++....++ ++..|+.+.+....+
T Consensus 1060 ~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~---dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1060 FINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMK---DFRNALEHEKVTYGI 1128 (1236)
T ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhH---HHHHHHHHHhhHHHH
Confidence 67788888889999999999999997532 22345566677666666 676666666655443
No 398
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=84.65 E-value=5.6 Score=28.12 Aligned_cols=47 Identities=28% Similarity=0.179 Sum_probs=29.3
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc
Q psy12642 87 AVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK 137 (201)
Q Consensus 87 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 137 (201)
.+...++.+...|+ +..+..++.++...| +.++|.....++....|.
T Consensus 130 ~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G---~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 130 YIEWAERLLRRRPD-PNVYQRYALALALLG---DPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHhCCC-HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCc
Confidence 33444555555554 666666666666666 667777777777666663
No 399
>KOG2041|consensus
Probab=84.63 E-value=26 Score=30.40 Aligned_cols=59 Identities=19% Similarity=0.102 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH----------------------HHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12642 35 AARKRKICILKAKNKIPEAIKELTE----------------------YLKKFMTDQETWQELCDLYLSEGDYAKAVFCME 92 (201)
Q Consensus 35 ~~~~~~a~~~~~~~~~~~A~~~~~~----------------------~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 92 (201)
.++..+|..+..+..+++|.++|.. +...-|++.+....+|..+...|--++|+++|-
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHH
Confidence 6677777777777777777777654 223458888888888888888888888887765
Q ss_pred H
Q psy12642 93 E 93 (201)
Q Consensus 93 ~ 93 (201)
+
T Consensus 877 r 877 (1189)
T KOG2041|consen 877 R 877 (1189)
T ss_pred h
Confidence 4
No 400
>KOG3783|consensus
Probab=84.60 E-value=14 Score=30.49 Aligned_cols=91 Identities=18% Similarity=0.057 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12642 17 EEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD----QETWQELCDLYLSEGDYAKAVFCME 92 (201)
Q Consensus 17 ~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~ 92 (201)
..+.+.+.......|.++......+..+...|+.+.|+..++..+. +.- .-.++.+|.++..+.+|..|...+.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4555666666667788888888888888888887778888877766 221 2355667888888888999998888
Q ss_pred HHhhcCCCCHHHHHHHH
Q psy12642 93 ELFLHHPHNHLLHQRYA 109 (201)
Q Consensus 93 ~al~~~~~~~~~~~~la 109 (201)
.....+.-+.-.+..++
T Consensus 328 ~L~desdWS~a~Y~Yfa 344 (546)
T KOG3783|consen 328 LLRDESDWSHAFYTYFA 344 (546)
T ss_pred HHHhhhhhhHHHHHHHH
Confidence 88777665555555554
No 401
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=84.47 E-value=11 Score=31.58 Aligned_cols=81 Identities=12% Similarity=0.081 Sum_probs=63.1
Q ss_pred hhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHH
Q psy12642 10 CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVF 89 (201)
Q Consensus 10 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 89 (201)
+-+....+.+....+.-+.-...........+..+...|..++|-.+|++.+..+|+ +.+...+.-+.+.|-...|..
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 95 (578)
T PRK15490 18 LKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQL 95 (578)
T ss_pred HHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHH
Confidence 344556666666666665555556666777788888889999999999999999988 567778888888998888888
Q ss_pred HHH
Q psy12642 90 CME 92 (201)
Q Consensus 90 ~~~ 92 (201)
.+.
T Consensus 96 ~~~ 98 (578)
T PRK15490 96 ILK 98 (578)
T ss_pred HHH
Confidence 877
No 402
>KOG3783|consensus
Probab=84.40 E-value=22 Score=29.46 Aligned_cols=91 Identities=13% Similarity=0.001 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC----CHHHHHHHHHHHHHcCCcccHHHHHH
Q psy12642 51 PEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPH----NHLLHQRYADILYTQGGLENIELAIS 126 (201)
Q Consensus 51 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~la~~~~~~~~~~~~~~A~~ 126 (201)
+...+.+.......|+++-.....+..+...|+-+.|+..++..+. +. .....+.+|.++.... +|..|..
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~---~~~~aad 324 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQH---QYSRAAD 324 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHH---HHHHHhh
Confidence 4555666666778898887777788888888998888888888876 22 1234667788888888 9999999
Q ss_pred HHHHHHcCCcccHHHHHHHH
Q psy12642 127 HYLMAINLNEKNIRALYGLA 146 (201)
Q Consensus 127 ~~~~al~~~p~~~~~~~~l~ 146 (201)
.+......+.-....+..++
T Consensus 325 ~~~~L~desdWS~a~Y~Yfa 344 (546)
T KOG3783|consen 325 SFDLLRDESDWSHAFYTYFA 344 (546)
T ss_pred HHHHHHhhhhhhHHHHHHHH
Confidence 99998888776666666666
No 403
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=84.31 E-value=5.6 Score=28.09 Aligned_cols=38 Identities=11% Similarity=-0.018 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhh
Q psy12642 121 IELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCS 159 (201)
Q Consensus 121 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~ 159 (201)
.+..++..++.++..|+ +..+..++.++...|+.++|.
T Consensus 127 l~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~ 164 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEAR 164 (193)
T ss_pred HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHH
Confidence 33444444555555554 445555555555555555553
No 404
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=83.75 E-value=16 Score=27.34 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=14.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12642 67 DQETWQELCDLYLSEGDYAKAVFCM 91 (201)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~A~~~~ 91 (201)
++..+..+|..+++.|++.+|..+|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 3556666666666666666666555
No 405
>KOG3616|consensus
Probab=83.67 E-value=30 Score=30.33 Aligned_cols=47 Identities=21% Similarity=0.275 Sum_probs=22.7
Q ss_pred HcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12642 46 AKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEE 93 (201)
Q Consensus 46 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 93 (201)
...++.+|+.++........ ....|-..+.-|...|+|+-|.+.|.+
T Consensus 744 ~akew~kai~ildniqdqk~-~s~yy~~iadhyan~~dfe~ae~lf~e 790 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQKT-ASGYYGEIADHYANKGDFEIAEELFTE 790 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhcc-ccccchHHHHHhccchhHHHHHHHHHh
Confidence 34445555544443332211 122344455566666666666665544
No 406
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.59 E-value=8.7 Score=24.16 Aligned_cols=33 Identities=12% Similarity=0.063 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q psy12642 35 AARKRKICILKAKNKIPEAIKELTEYLKKFMTD 67 (201)
Q Consensus 35 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~ 67 (201)
..+..+|.+|...|+.+.+...|+.--.++|++
T Consensus 73 G~HAhLGlLys~~G~~e~a~~eFetEKalFPES 105 (121)
T COG4259 73 GYHAHLGLLYSNSGKDEQAVREFETEKALFPES 105 (121)
T ss_pred cHHHHHHHHHhhcCChHHHHHHHHHhhhhCccc
Confidence 334444444444444444444444444444444
No 407
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.45 E-value=27 Score=29.72 Aligned_cols=118 Identities=18% Similarity=0.060 Sum_probs=77.8
Q ss_pred hhhccCHHHHHHHHHHHHhcCcc--cH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---CHHHH-HH-H-HHH
Q psy12642 10 CFHFFRYEEALEHLETIIKIDET--NT----AARKRKICILKAKNKIPEAIKELTEYLKKFMT---DQETW-QE-L-CDL 77 (201)
Q Consensus 10 ~~~~~~~~~A~~~~~~~l~~~~~--~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~-~~-l-~~~ 77 (201)
+....+++.|..++.+++..... .. .+...++.++...+... |...+++.++...+ ....| +. + ...
T Consensus 70 ~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l 148 (608)
T PF10345_consen 70 LEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQL 148 (608)
T ss_pred HHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34678999999999999876633 22 33446678888877766 99999998886544 22222 22 2 233
Q ss_pred HHhcCCHHHHHHHHHHHhhcC--CCCHHHH----HHHHHHHHHcCCcccHHHHHHHHHHH
Q psy12642 78 YLSEGDYAKAVFCMEELFLHH--PHNHLLH----QRYADILYTQGGLENIELAISHYLMA 131 (201)
Q Consensus 78 ~~~~~~~~~A~~~~~~al~~~--~~~~~~~----~~la~~~~~~~~~~~~~~A~~~~~~a 131 (201)
....+++..|+..++.+.... +.++.+. ...+.++...+ ..+++++..+++
T Consensus 149 ~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~---~~~d~~~~l~~~ 205 (608)
T PF10345_consen 149 ALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRG---SPDDVLELLQRA 205 (608)
T ss_pred HHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCC---CchhHHHHHHHH
Confidence 333489999999999998765 3555432 22345555556 566677777666
No 408
>KOG0686|consensus
Probab=83.30 E-value=19 Score=28.81 Aligned_cols=95 Identities=8% Similarity=-0.066 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC--------CCHH
Q psy12642 35 AARKRKICILKAKNKIPEAIKELTEYLKKFMT---DQETWQELCDLYLSEGDYAKAVFCMEELFLHHP--------HNHL 103 (201)
Q Consensus 35 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--------~~~~ 103 (201)
.++..+|.-|...|+.+.|++.|.++...-.. ....|..+-.+-...|+|..-..+..++...-. -.+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 56777888899999999999999985553222 245666666777788999888888877765410 1123
Q ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHH
Q psy12642 104 LHQRYADILYTQGGLENIELAISHYLMAI 132 (201)
Q Consensus 104 ~~~~la~~~~~~~~~~~~~~A~~~~~~al 132 (201)
+...-|.+....+ .|..|.++|-.+.
T Consensus 231 l~C~agLa~L~lk---kyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 231 LKCAAGLANLLLK---KYKSAAKYFLLAE 256 (466)
T ss_pred hHHHHHHHHHHHH---HHHHHHHHHHhCC
Confidence 4556677777788 8999999888764
No 409
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=83.21 E-value=14 Score=28.79 Aligned_cols=131 Identities=15% Similarity=0.066 Sum_probs=85.7
Q ss_pred hccCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Q psy12642 12 HFFRYEEALEHLETIIKID-ETNTAARKRKICILKA-----KNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYA 85 (201)
Q Consensus 12 ~~~~~~~A~~~~~~~l~~~-~~~~~~~~~~a~~~~~-----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 85 (201)
+.+-.+++...+++++... |.-....-.++.++-. .-+|..-...|.......|+ |.+-.+.+.......-.+
T Consensus 268 ~r~lI~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~ 346 (415)
T COG4941 268 DRALIDEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPA 346 (415)
T ss_pred hHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHH
Confidence 3456778888888888865 3333333334444433 24566666666666666664 444445555555555566
Q ss_pred HHHHHHHHHhhc--CCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHH
Q psy12642 86 KAVFCMEELFLH--HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLA 146 (201)
Q Consensus 86 ~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 146 (201)
.++...+.+... -.+...++...|..+...| +.++|...|++++.+.++.....+...
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLg---r~~eAr~aydrAi~La~~~aer~~l~~ 406 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLG---RVEEARAAYDRAIALARNAAERAFLRQ 406 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhC---ChHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 777777666544 2344567788899999999 999999999999999888666544433
No 410
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=83.11 E-value=7.4 Score=23.01 Aligned_cols=19 Identities=16% Similarity=0.272 Sum_probs=8.0
Q ss_pred HHHHHHHHHHhhcCCCCHH
Q psy12642 85 AKAVFCMEELFLHHPHNHL 103 (201)
Q Consensus 85 ~~A~~~~~~al~~~~~~~~ 103 (201)
.+|++.+.+++...|+++.
T Consensus 30 ~~aIe~L~q~~~~~pD~~~ 48 (75)
T cd02682 30 KKAIEVLSQIVKNYPDSPT 48 (75)
T ss_pred HHHHHHHHHHHHhCCChHH
Confidence 3344444444444444433
No 411
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=83.03 E-value=3.8 Score=20.23 Aligned_cols=34 Identities=15% Similarity=-0.048 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCc
Q psy12642 103 LLHQRYADILYTQGGLENIELAISHYLMAINLNE 136 (201)
Q Consensus 103 ~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p 136 (201)
...+++|.++.......+..+++..++..++..|
T Consensus 2 qt~FnyAw~Lv~S~~~~d~~~Gi~lLe~l~~~~p 35 (35)
T PF14852_consen 2 QTQFNYAWGLVKSNNREDQQEGIALLEELYRDEP 35 (35)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHCCCS-
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHhccC
Confidence 4567777777777766667777777777766544
No 412
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=83.00 E-value=19 Score=29.11 Aligned_cols=89 Identities=16% Similarity=0.125 Sum_probs=60.5
Q ss_pred hhhhccCHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHhcCC
Q psy12642 9 GCFHFFRYEEALEHLETIIKIDETN---TAARKRKICILKAKNKIPEAIKELTEYLK--KFMTDQETWQELCDLYLSEGD 83 (201)
Q Consensus 9 ~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~ 83 (201)
......+.+++...+.+........ +.........+...|..+.++.++..-+. ++|++..+. .+-..+.+.|+
T Consensus 75 ~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n-~Lmd~fl~~~~ 153 (429)
T PF10037_consen 75 NVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN-LLMDHFLKKGN 153 (429)
T ss_pred hcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH-HHHHHHhhccc
Confidence 3444555666777776654432111 23344667778899999999999887666 567765544 45578889999
Q ss_pred HHHHHHHHHHHhhcC
Q psy12642 84 YAKAVFCMEELFLHH 98 (201)
Q Consensus 84 ~~~A~~~~~~al~~~ 98 (201)
|..|..+.......+
T Consensus 154 ~~~A~~V~~~~~lQe 168 (429)
T PF10037_consen 154 YKSAAKVATEMMLQE 168 (429)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999988776543
No 413
>KOG0686|consensus
Probab=82.96 E-value=9.1 Score=30.54 Aligned_cols=91 Identities=7% Similarity=-0.168 Sum_probs=63.8
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--------CHHHHHHH
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKIDET---NTAARKRKICILKAKNKIPEAIKELTEYLKKFMT--------DQETWQEL 74 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~--------~~~~~~~l 74 (201)
++..|...|+++.|+..|-++-....+ ....+.....+....|+|........++.+.-.. .+.+...-
T Consensus 156 l~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~a 235 (466)
T KOG0686|consen 156 LGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLKCAA 235 (466)
T ss_pred HHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchHHHH
Confidence 344577799999999999996654432 3355667777888889998888887777654100 12234445
Q ss_pred HHHHHhcCCHHHHHHHHHHHhh
Q psy12642 75 CDLYLSEGDYAKAVFCMEELFL 96 (201)
Q Consensus 75 ~~~~~~~~~~~~A~~~~~~al~ 96 (201)
|.+.+..++|..|.++|-.+..
T Consensus 236 gLa~L~lkkyk~aa~~fL~~~~ 257 (466)
T KOG0686|consen 236 GLANLLLKKYKSAAKYFLLAEF 257 (466)
T ss_pred HHHHHHHHHHHHHHHHHHhCCC
Confidence 6667777899999999877653
No 414
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=82.84 E-value=22 Score=28.28 Aligned_cols=54 Identities=20% Similarity=0.206 Sum_probs=40.2
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcCccc-----HHHHHH--HHHHHHHcCCHHHHHHHHHH
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKIDETN-----TAARKR--KICILKAKNKIPEAIKELTE 59 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~-----~~~~~~--~a~~~~~~~~~~~A~~~~~~ 59 (201)
.+..++..++|..|...|++++...++. ...+.. .|..++..-++++|.+.+++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 4567889999999999999999876421 223333 34456677889999999985
No 415
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=82.40 E-value=3.8 Score=19.13 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=15.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhh
Q psy12642 71 WQELCDLYLSEGDYAKAVFCMEELFL 96 (201)
Q Consensus 71 ~~~l~~~~~~~~~~~~A~~~~~~al~ 96 (201)
|..+-..|.+.|++++|...|.+...
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34445556666666666666665543
No 416
>KOG0546|consensus
Probab=82.38 E-value=1.5 Score=34.02 Aligned_cols=106 Identities=13% Similarity=0.114 Sum_probs=80.6
Q ss_pred hhhhccCHHHHHHHHHHHHhcCc-----------c--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH
Q psy12642 9 GCFHFFRYEEALEHLETIIKIDE-----------T--------NTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQE 69 (201)
Q Consensus 9 ~~~~~~~~~~A~~~~~~~l~~~~-----------~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 69 (201)
..++.+++++|..-|.+++..-. + -......++.+-+..+.+..|+..-..++..++....
T Consensus 231 ~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tk 310 (372)
T KOG0546|consen 231 KEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTK 310 (372)
T ss_pred hhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccChhhCc
Confidence 36778888888888888776321 1 0022334566667778888888877777777888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q psy12642 70 TWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYT 114 (201)
Q Consensus 70 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 114 (201)
+++..+..+....++++|+..++.+....|++......+..+-..
T Consensus 311 a~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~ 355 (372)
T KOG0546|consen 311 AHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQK 355 (372)
T ss_pred HHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhH
Confidence 999999999999999999999999999999998776666554433
No 417
>KOG4151|consensus
Probab=81.69 E-value=10 Score=32.72 Aligned_cols=115 Identities=15% Similarity=0.070 Sum_probs=80.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHH--hcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q psy12642 41 ICILKAKNKIPEAIKELTEYLKKFMTD----QETWQELCDLYL--SEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYT 114 (201)
Q Consensus 41 a~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~--~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 114 (201)
+...+..+++..+..-|..++.+-|.+ .......+.++. ..|+|.+++.-.+-++...|.-..+++..+.+|..
T Consensus 60 ~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~a 139 (748)
T KOG4151|consen 60 GNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEA 139 (748)
T ss_pred hhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHH
Confidence 445566667777766677777766643 233334444544 56788888888888888888888888888888888
Q ss_pred cCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhh
Q psy12642 115 QGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKC 158 (201)
Q Consensus 115 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a 158 (201)
.+ ..+-|++...-.....|.++.+..-....+.-....+.+
T Consensus 140 l~---k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll~~~d~~ 180 (748)
T KOG4151|consen 140 LN---KLDLAVRDLRIVEKMDPSNVSASEIFEELKGLLELKDLA 180 (748)
T ss_pred HH---HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcCCc
Confidence 88 888888888878888888866555445544444444444
No 418
>KOG2422|consensus
Probab=81.67 E-value=31 Score=29.07 Aligned_cols=117 Identities=13% Similarity=0.057 Sum_probs=84.9
Q ss_pred hccCHHHHHHHHHHHHhc------------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hc----------
Q psy12642 12 HFFRYEEALEHLETIIKI------------DETNTAARKRKICILKAKNKIPEAIKELTEYLK-----KF---------- 64 (201)
Q Consensus 12 ~~~~~~~A~~~~~~~l~~------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-----~~---------- 64 (201)
....|++|...|.-+... .|.+...+..++.+...+|+.+.|...+++++= ..
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 345677777777666554 377789999999999999999999988888763 11
Q ss_pred ------CCCHHHHHH---HHHHHHhcCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHH-HcCCcccHHHHHHHHHHH
Q psy12642 65 ------MTDQETWQE---LCDLYLSEGDYAKAVFCMEELFLHHPH-NHLLHQRYADILY-TQGGLENIELAISHYLMA 131 (201)
Q Consensus 65 ------p~~~~~~~~---l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~-~~~~~~~~~~A~~~~~~a 131 (201)
|.+-.++.. .-....+.|-+..|.++.+-.+.++|. ||.+...+-.+|. ... +|+--++.++..
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrar---eYqwiI~~~~~~ 404 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAR---EYQWIIELSNEP 404 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHH---hHHHHHHHHHHH
Confidence 222222222 224455789999999999999999998 8888777777665 444 777777777765
No 419
>KOG4014|consensus
Probab=80.13 E-value=19 Score=25.66 Aligned_cols=132 Identities=11% Similarity=0.024 Sum_probs=87.4
Q ss_pred ccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-----C
Q psy12642 13 FFRYEEALEHLETIIKIDETNTAARKRKICILKA-----KNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSE-----G 82 (201)
Q Consensus 13 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~-----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-----~ 82 (201)
+.+|++|...|+.--+.+. .+..-+.+|..++. .++...|++.+..+-. .+++.+...+|.++..- +
T Consensus 48 ~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~ 124 (248)
T KOG4014|consen 48 QKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKA 124 (248)
T ss_pred HHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccC
Confidence 4577888887777655443 34444455554432 3568888888887665 56788888888877632 2
Q ss_pred C--HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHc-----------CCc----------ccHHHHHHHHHHHHcCCcccH
Q psy12642 83 D--YAKAVFCMEELFLHHPHNHLLHQRYADILYTQ-----------GGL----------ENIELAISHYLMAINLNEKNI 139 (201)
Q Consensus 83 ~--~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-----------~~~----------~~~~~A~~~~~~al~~~p~~~ 139 (201)
+ .++|..++.++-.+. +..+.+.+...+... |.+ .+.+.|.++--++.++ +++
T Consensus 125 dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel--~~~ 200 (248)
T KOG4014|consen 125 DPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACEL--DIP 200 (248)
T ss_pred CCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhc--CCh
Confidence 3 688999999886544 555666666655543 111 3677788887777776 456
Q ss_pred HHHHHHHHHHHH
Q psy12642 140 RALYGLALSCHQ 151 (201)
Q Consensus 140 ~~~~~l~~~~~~ 151 (201)
.+-.++++.|..
T Consensus 201 ~aCAN~SrMykl 212 (248)
T KOG4014|consen 201 QACANVSRMYKL 212 (248)
T ss_pred HHHhhHHHHHHc
Confidence 777888888765
No 420
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=79.37 E-value=15 Score=24.14 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHcCCcccHHHHHHHHH
Q psy12642 104 LHQRYADILYTQGGLENIELAISHYL 129 (201)
Q Consensus 104 ~~~~la~~~~~~~~~~~~~~A~~~~~ 129 (201)
.+...|..+...| ++.+|.+.|+
T Consensus 101 fYe~~A~~lE~~g---~~~~A~~iy~ 123 (125)
T smart00777 101 FYEEWAQLLEAAG---RYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHHcC---CHHHHHHHHH
Confidence 3334444444444 5555544443
No 421
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=78.84 E-value=8.1 Score=28.33 Aligned_cols=22 Identities=23% Similarity=0.218 Sum_probs=14.0
Q ss_pred HHHhcCCHHHHHHHHHHHhhcC
Q psy12642 77 LYLSEGDYAKAVFCMEELFLHH 98 (201)
Q Consensus 77 ~~~~~~~~~~A~~~~~~al~~~ 98 (201)
..+..|+++.|+.....+|..+
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~ 113 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHG 113 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcC
Confidence 3456677777777777766543
No 422
>KOG0128|consensus
Probab=77.02 E-value=52 Score=29.01 Aligned_cols=105 Identities=13% Similarity=-0.041 Sum_probs=77.9
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHH
Q psy12642 49 KIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHY 128 (201)
Q Consensus 49 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~ 128 (201)
.-++-+..++.-+.+++.+......|-.+....|+.++-...-.++..+.|.++..|..-..-...+....+..++...|
T Consensus 94 ~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ 173 (881)
T KOG0128|consen 94 GGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELF 173 (881)
T ss_pred cchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHH
Confidence 34555666777777788888888888889999999998888888888888888888776655444443334788999999
Q ss_pred HHHHcCCcccHHHHHHHHHHHHHhhh
Q psy12642 129 LMAINLNEKNIRALYGLALSCHQVLT 154 (201)
Q Consensus 129 ~~al~~~p~~~~~~~~l~~~~~~~~~ 154 (201)
++++.-. +.+..|...+......++
T Consensus 174 ekal~dy-~~v~iw~e~~~y~~~~~~ 198 (881)
T KOG0128|consen 174 EKALGDY-NSVPIWEEVVNYLVGFGN 198 (881)
T ss_pred HHHhccc-ccchHHHHHHHHHHhccc
Confidence 9998654 556667777766666555
No 423
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=76.93 E-value=7.1 Score=23.09 Aligned_cols=17 Identities=35% Similarity=0.362 Sum_probs=10.3
Q ss_pred HcCCHHHHHHHHHHHHH
Q psy12642 46 AKNKIPEAIKELTEYLK 62 (201)
Q Consensus 46 ~~~~~~~A~~~~~~~~~ 62 (201)
..|++++|+.+|..+++
T Consensus 18 ~~gny~eA~~lY~~ale 34 (75)
T cd02680 18 EKGNAEEAIELYTEAVE 34 (75)
T ss_pred HhhhHHHHHHHHHHHHH
Confidence 34666666666666655
No 424
>KOG2114|consensus
Probab=76.90 E-value=53 Score=29.05 Aligned_cols=53 Identities=19% Similarity=0.142 Sum_probs=34.2
Q ss_pred hhhhccCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy12642 9 GCFHFFRYEEALEHLETIIKIDET-NTAARKRKICILKAKNKIPEAIKELTEYLK 62 (201)
Q Consensus 9 ~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 62 (201)
.+++...|+-|+.+-+.-- .+++ -..++...|.-++..|++++|...|-+.+.
T Consensus 343 iL~kK~ly~~Ai~LAk~~~-~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~ 396 (933)
T KOG2114|consen 343 ILFKKNLYKVAINLAKSQH-LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG 396 (933)
T ss_pred HHHHhhhHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc
Confidence 4566677777776655432 2222 235566677777888888888887777654
No 425
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=76.55 E-value=8.2 Score=23.08 Aligned_cols=16 Identities=25% Similarity=0.605 Sum_probs=8.6
Q ss_pred CHHHHHHHHHHHHhcC
Q psy12642 15 RYEEALEHLETIIKID 30 (201)
Q Consensus 15 ~~~~A~~~~~~~l~~~ 30 (201)
.|+.|.++.++++..+
T Consensus 4 ~~~~A~~~I~kaL~~d 19 (79)
T cd02679 4 YYKQAFEEISKALRAD 19 (79)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 4555565555555433
No 426
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=76.17 E-value=12 Score=24.52 Aligned_cols=31 Identities=23% Similarity=0.310 Sum_probs=22.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCHH
Q psy12642 73 ELCDLYLSEGDYAKAVFCMEELFLHHPHNHL 103 (201)
Q Consensus 73 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 103 (201)
.+|..+...|++++|..+|-.|+...|....
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~ 98 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQPAE 98 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCHHH
Confidence 4677777788888888888888888777443
No 427
>KOG3677|consensus
Probab=75.38 E-value=10 Score=30.42 Aligned_cols=107 Identities=10% Similarity=0.004 Sum_probs=57.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHH
Q psy12642 37 RKRKICILKAKNKIPEAIKELTEYLKKFMTDQ-------ETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYA 109 (201)
Q Consensus 37 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la 109 (201)
+..+-+++.-+|+++. -.+.+++.|... .+-+..|.+|+.+++|.+|+..|-..+..-..........+
T Consensus 238 L~GLlR~H~lLgDhQa----t~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niLlyIqrtks~~~~~~ 313 (525)
T KOG3677|consen 238 LLGLLRMHILLGDHQA----TSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNILLYIQRTKSMFSRTT 313 (525)
T ss_pred HHHHHHHHHHhhhhHh----hhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Confidence 4445556666788554 334455555431 12266899999999999999999877642111111112222
Q ss_pred HHHHHcCCcccHHHHHHHHHHHHcCCcc--cHHHHHHHHHHH
Q psy12642 110 DILYTQGGLENIELAISHYLMAINLNEK--NIRALYGLALSC 149 (201)
Q Consensus 110 ~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~ 149 (201)
..+-..++ +.+.--..+.-++.+.|. +...+..++++|
T Consensus 314 y~~d~inK--q~eqm~~llai~l~~yPq~iDESi~s~l~Ek~ 353 (525)
T KOG3677|consen 314 YQYDMINK--QNEQMHHLLAICLSMYPQMIDESIHSQLAEKY 353 (525)
T ss_pred hhHhhhhh--hHHHHHHHHHHHHHhCchhhhHHHHHHHHHHh
Confidence 22222221 445555566666666663 233444455553
No 428
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=75.04 E-value=8 Score=18.68 Aligned_cols=16 Identities=31% Similarity=0.532 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHhhcCC
Q psy12642 84 YAKAVFCMEELFLHHP 99 (201)
Q Consensus 84 ~~~A~~~~~~al~~~~ 99 (201)
++.|...|++.+...|
T Consensus 3 ~dRAR~IyeR~v~~hp 18 (32)
T PF02184_consen 3 FDRARSIYERFVLVHP 18 (32)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 3444444444444443
No 429
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=74.95 E-value=16 Score=29.02 Aligned_cols=39 Identities=13% Similarity=-0.003 Sum_probs=29.8
Q ss_pred cHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642 120 NIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSA 160 (201)
Q Consensus 120 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 160 (201)
-...|++++++|.. .++|..|..+|.++..+|+.-....
T Consensus 333 l~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS 371 (404)
T PF12753_consen 333 LIKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNES 371 (404)
T ss_dssp HHHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHH
T ss_pred HHHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccch
Confidence 36788888888876 4668899999999999999876633
No 430
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=74.80 E-value=21 Score=23.47 Aligned_cols=51 Identities=22% Similarity=0.249 Sum_probs=37.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12642 41 ICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCME 92 (201)
Q Consensus 41 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 92 (201)
...+...+.....+.+++.++..++.++.....+..+|.+. +..+.+..++
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 33445567889999999999988888888888888888754 3455555555
No 431
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=74.45 E-value=23 Score=23.77 Aligned_cols=83 Identities=14% Similarity=0.061 Sum_probs=51.5
Q ss_pred hhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12642 11 FHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFC 90 (201)
Q Consensus 11 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 90 (201)
...|+....+.++-.. +..+..+-. --.....+|+-++-.+.+....+....+|++...+|.+|.+.|+..++-+.
T Consensus 67 s~C~NlKrVi~C~~~~---n~~se~vD~-ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~el 142 (161)
T PF09205_consen 67 SKCGNLKRVIECYAKR---NKLSEYVDL-ALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANEL 142 (161)
T ss_dssp GG-S-THHHHHHHHHT---T---HHHHH-HHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred hhhcchHHHHHHHHHh---cchHHHHHH-HHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHH
Confidence 3456777777776553 222222222 223456778888888888888876667899999999999999999999999
Q ss_pred HHHHhhc
Q psy12642 91 MEELFLH 97 (201)
Q Consensus 91 ~~~al~~ 97 (201)
+.+|-+.
T Consensus 143 l~~ACek 149 (161)
T PF09205_consen 143 LKEACEK 149 (161)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9888653
No 432
>KOG1464|consensus
Probab=74.37 E-value=13 Score=28.19 Aligned_cols=50 Identities=12% Similarity=0.230 Sum_probs=41.2
Q ss_pred cCCHHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q psy12642 47 KNKIPEAIKELTEYLKKFMTDQ----ETWQELCDLYLSEGDYAKAVFCMEELFL 96 (201)
Q Consensus 47 ~~~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~al~ 96 (201)
..++++|+..|++++++.|... .++-.+..+++++|+|++-...|.+.+.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 4578999999999999887763 3556677889999999999999988774
No 433
>KOG1811|consensus
Probab=73.68 E-value=57 Score=27.89 Aligned_cols=71 Identities=8% Similarity=0.002 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc
Q psy12642 66 TDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHN-HLLHQRYADILYTQGGLENIELAISHYLMAINLNEK 137 (201)
Q Consensus 66 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 137 (201)
+...+|...|..+++.+++..|..-|.++++....+ |.+.+.+-.. ...|.+-+....+++++...+-.|.
T Consensus 585 D~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkgedipdvi~diin~-ieGgpp~dVq~Vrem~dhlak~apt 656 (1141)
T KOG1811|consen 585 DTFGAWHAWGLACLKAENLAAAREKFKQAFKLKGEDIPDVIFDIINL-IEGGPPRDVQDVREMLDHLAKPAPT 656 (1141)
T ss_pred CcccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCccchHHHHHHHh-hcCCCcchHHHHHHHHHHhccCCcc
Confidence 445689999999999999999999999999987544 5566666543 3334445778888888887776553
No 434
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=72.98 E-value=57 Score=27.63 Aligned_cols=80 Identities=16% Similarity=0.124 Sum_probs=59.1
Q ss_pred HHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHH
Q psy12642 45 KAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELA 124 (201)
Q Consensus 45 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A 124 (201)
.+....+.+....+..+.....+....+..+..+-.-+..++|-.+|++.+..+|+ ..++..+.-++..| -...|
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~ 93 (578)
T PRK15490 19 KQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTG---LAKDA 93 (578)
T ss_pred HHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhh---hhhHH
Confidence 34455666666666655444445556666778888889999999999999999998 55667777778888 77777
Q ss_pred HHHHH
Q psy12642 125 ISHYL 129 (201)
Q Consensus 125 ~~~~~ 129 (201)
...++
T Consensus 94 ~~~~~ 98 (578)
T PRK15490 94 QLILK 98 (578)
T ss_pred HHHHH
Confidence 77776
No 435
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=72.88 E-value=42 Score=26.05 Aligned_cols=99 Identities=11% Similarity=0.037 Sum_probs=66.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHH
Q psy12642 43 ILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIE 122 (201)
Q Consensus 43 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~ 122 (201)
.....|+...|.++-.+. + -.+...|.....++...++|++-..... ...+|-.+.....+....| +..
T Consensus 186 ~li~~~~~k~A~kl~k~F-k--v~dkrfw~lki~aLa~~~~w~eL~~fa~-----skKsPIGyepFv~~~~~~~---~~~ 254 (319)
T PF04840_consen 186 KLIEMGQEKQAEKLKKEF-K--VPDKRFWWLKIKALAENKDWDELEKFAK-----SKKSPIGYEPFVEACLKYG---NKK 254 (319)
T ss_pred HHHHCCCHHHHHHHHHHc-C--CcHHHHHHHHHHHHHhcCCHHHHHHHHh-----CCCCCCChHHHHHHHHHCC---CHH
Confidence 345678877776664432 2 2356678888888899999987665432 1334556666777777888 889
Q ss_pred HHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhh
Q psy12642 123 LAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAA 161 (201)
Q Consensus 123 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 161 (201)
+|..+..+ +. + ......|.+.|++.+|...
T Consensus 255 eA~~yI~k---~~-~-----~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 255 EASKYIPK---IP-D-----EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHh---CC-h-----HHHHHHHHHCCCHHHHHHH
Confidence 99999988 22 2 2345666788888888553
No 436
>PRK11619 lytic murein transglycosylase; Provisional
Probab=72.31 E-value=64 Score=27.86 Aligned_cols=122 Identities=14% Similarity=0.076 Sum_probs=55.4
Q ss_pred HHhhhhccCHHHHHHHHHHHHhcCcccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q psy12642 7 IIGCFHFFRYEEALEHLETIIKIDETNT----AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG 82 (201)
Q Consensus 7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 82 (201)
++.-....+.+.|...+.+.....+-+. .++..++.-....+...++...+....... .+...+.....+-...+
T Consensus 248 ~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~-~~~~~~e~r~r~Al~~~ 326 (644)
T PRK11619 248 AFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS-QSTSLLERRVRMALGTG 326 (644)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc-CCcHHHHHHHHHHHHcc
Confidence 3333344555666666665433332111 222222222222222344444444433221 12222222333444566
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Q psy12642 83 DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAI 132 (201)
Q Consensus 83 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al 132 (201)
+++....++...-..........+-+|.++...| +.++|...|+++.
T Consensus 327 dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g---~~~~A~~~~~~~a 373 (644)
T PRK11619 327 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQG---RKAEAEEILRQLM 373 (644)
T ss_pred CHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcC---CHHHHHHHHHHHh
Confidence 6666655555543323334445555666655566 6666666666653
No 437
>KOG2114|consensus
Probab=71.98 E-value=29 Score=30.51 Aligned_cols=108 Identities=17% Similarity=0.013 Sum_probs=62.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-CCCCHHHHHHHHHHHHHcCCc
Q psy12642 41 ICILKAKNKIPEAIKELTEYLKKFMTD-QETWQELCDLYLSEGDYAKAVFCMEELFLH-HPHNHLLHQRYADILYTQGGL 118 (201)
Q Consensus 41 a~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~~~~ 118 (201)
-.+....+-|+-|+...+.- ..+++. ..+....|.-++..|++++|...|-+.|.. +|...--.+ ....
T Consensus 341 L~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kf------Ldaq-- 411 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKF------LDAQ-- 411 (933)
T ss_pred HHHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHh------cCHH--
Confidence 34555666677777665542 223332 456777899999999999999999999864 333221111 1111
Q ss_pred ccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhh
Q psy12642 119 ENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKC 158 (201)
Q Consensus 119 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a 158 (201)
...+-..+++...+..-.+..--..|..||.++++.++-
T Consensus 412 -~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL 450 (933)
T KOG2114|consen 412 -RIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKL 450 (933)
T ss_pred -HHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHH
Confidence 333334444444444333333334566777777766655
No 438
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=71.29 E-value=9.2 Score=17.77 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=13.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Q psy12642 71 WQELCDLYLSEGDYAKAVFCMEELF 95 (201)
Q Consensus 71 ~~~l~~~~~~~~~~~~A~~~~~~al 95 (201)
|..+-.++.+.|+++.|...|+...
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~ 28 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMK 28 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444455555666666655555543
No 439
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=71.06 E-value=16 Score=20.58 Aligned_cols=53 Identities=17% Similarity=-0.019 Sum_probs=29.9
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCccc-HHHHHH-----HHHHHHHcCCHHHHHHH
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETN-TAARKR-----KICILKAKNKIPEAIKE 56 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~-----~a~~~~~~~~~~~A~~~ 56 (201)
+..++.++..|+|=+|-+.++.+....|.. ...+.. .|......|+...|...
T Consensus 3 ~~~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 3 LEEGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 456677788888888888888887654422 222221 22234455666666544
No 440
>KOG3616|consensus
Probab=70.70 E-value=75 Score=28.04 Aligned_cols=47 Identities=13% Similarity=0.079 Sum_probs=36.0
Q ss_pred hhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy12642 11 FHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELT 58 (201)
Q Consensus 11 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 58 (201)
...|+|++|..+++. ++..|+....|.+++.+....|+.--|.++|.
T Consensus 455 id~~df~ra~afles-~~~~~da~amw~~laelale~~nl~iaercfa 501 (1636)
T KOG3616|consen 455 IDDGDFDRATAFLES-LEMGPDAEAMWIRLAELALEAGNLFIAERCFA 501 (1636)
T ss_pred cccCchHHHHHHHHh-hccCccHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 467999999988765 56788888889999888887777655555543
No 441
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=69.95 E-value=11 Score=18.24 Aligned_cols=16 Identities=25% Similarity=0.239 Sum_probs=10.4
Q ss_pred ccHHHHHHHHHHHHcC
Q psy12642 119 ENIELAISHYLMAINL 134 (201)
Q Consensus 119 ~~~~~A~~~~~~al~~ 134 (201)
.+.++|+.+|+++.+.
T Consensus 22 ~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 22 KDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred ccccchHHHHHHHHHc
Confidence 3567777777776554
No 442
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=69.67 E-value=37 Score=24.10 Aligned_cols=66 Identities=18% Similarity=0.313 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHhcCCCHH--------HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcC
Q psy12642 50 IPEAIKELTEYLKKFMTDQE--------TWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQG 116 (201)
Q Consensus 50 ~~~A~~~~~~~~~~~p~~~~--------~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 116 (201)
.+.|+..++..-+-.|..-. +......++.+.|.+++|.+.+++... +|++......+..+-...+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccc
Confidence 46677777776665543211 122234678899999999999999998 8887777666666644444
No 443
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=69.64 E-value=10 Score=17.68 Aligned_cols=27 Identities=19% Similarity=0.025 Sum_probs=14.3
Q ss_pred HHHHHHHHcCCcccHHHHHHHHHHHHH
Q psy12642 125 ISHYLMAINLNEKNIRALYGLALSCHQ 151 (201)
Q Consensus 125 ~~~~~~al~~~p~~~~~~~~l~~~~~~ 151 (201)
+++...++..+|.+..+|...-.+..+
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~ll~~ 29 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRWLLKQ 29 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHHHHHH
Confidence 344455555566655555555544443
No 444
>PF15469 Sec5: Exocyst complex component Sec5
Probab=68.37 E-value=38 Score=23.67 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=15.1
Q ss_pred HHHcCCHHHHHHHHHHHHHhc
Q psy12642 44 LKAKNKIPEAIKELTEYLKKF 64 (201)
Q Consensus 44 ~~~~~~~~~A~~~~~~~~~~~ 64 (201)
+...|+|+.++..|.++....
T Consensus 96 ~i~~~dy~~~i~dY~kak~l~ 116 (182)
T PF15469_consen 96 CIKKGDYDQAINDYKKAKSLF 116 (182)
T ss_pred HHHcCcHHHHHHHHHHHHHHH
Confidence 456688888888887776654
No 445
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=67.50 E-value=33 Score=22.63 Aligned_cols=63 Identities=16% Similarity=0.233 Sum_probs=37.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCC---------------CHHHHHHHHHHHHHcCCcccHHHHHHHHHHH----Hc
Q psy12642 73 ELCDLYLSEGDYAKAVFCMEELFLHHPH---------------NHLLHQRYADILYTQGGLENIELAISHYLMA----IN 133 (201)
Q Consensus 73 ~l~~~~~~~~~~~~A~~~~~~al~~~~~---------------~~~~~~~la~~~~~~~~~~~~~~A~~~~~~a----l~ 133 (201)
.+|...++.+++-.++-.|++++....+ ......++|..+...| +.+-.+++++-| +.
T Consensus 6 llAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~g---d~~yELkYLqlASE~Vlt 82 (140)
T PF10952_consen 6 LLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQG---DSDYELKYLQLASEKVLT 82 (140)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcC---ChHHHHHHHHHHHHHHHH
Confidence 3455555555655555555555533111 1234678888888888 888888887654 44
Q ss_pred CCccc
Q psy12642 134 LNEKN 138 (201)
Q Consensus 134 ~~p~~ 138 (201)
+-|..
T Consensus 83 LiPQC 87 (140)
T PF10952_consen 83 LIPQC 87 (140)
T ss_pred hccCC
Confidence 55543
No 446
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=67.37 E-value=44 Score=24.01 Aligned_cols=120 Identities=8% Similarity=0.014 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHhhcCCCCHH----------
Q psy12642 35 AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELC-DLYLSEGDYAKAVFCMEELFLHHPHNHL---------- 103 (201)
Q Consensus 35 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~-~~~~~~~~~~~A~~~~~~al~~~~~~~~---------- 103 (201)
..+..+-......|+++.|-++|--.++..+-|....-.+| .++...+.-....++++......|....
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~~~~~~~~~~~~~~~ 121 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYPSRKAFNQYYNRRII 121 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHHHhhhccchhhhhcc
Confidence 34444555566789999999999999987766655444444 5666666655555666665543331110
Q ss_pred ------------HHHHHHHHH--HHcC-----CcccHHHHHHHHHHHHcCCc--ccHHHHHHHHHHHHHhhh
Q psy12642 104 ------------LHQRYADIL--YTQG-----GLENIELAISHYLMAINLNE--KNIRALYGLALSCHQVLT 154 (201)
Q Consensus 104 ------------~~~~la~~~--~~~~-----~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~ 154 (201)
..+.+.... .... ..+.+++.++-....+-.-| +++..|+..|+|+.-..+
T Consensus 122 ~pvfrsGs~t~tp~y~~~~LW~~l~~~~~~~~~~~~~~~l~~ri~Elvl~PPy~d~~el~~i~~m~~L~~Ad 193 (199)
T PF04090_consen 122 APVFRSGSRTHTPLYAITWLWILLIQEEDRESELDSYQQLIERIDELVLSPPYMDDGELWFIRGMCHLWIAD 193 (199)
T ss_pred cccccCCCcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHH
Confidence 011111111 1112 00024555555555555444 578899999998876554
No 447
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=67.19 E-value=75 Score=26.65 Aligned_cols=64 Identities=14% Similarity=0.017 Sum_probs=49.5
Q ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q psy12642 31 ETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFL 96 (201)
Q Consensus 31 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 96 (201)
..+-.++..++.+|... ..++-...+++.++.+-++...-..++..|.. ++-.++..+|.+++-
T Consensus 96 ~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~y 159 (711)
T COG1747 96 GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALY 159 (711)
T ss_pred cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHH
Confidence 45567788888888877 56677788888888888888888888877765 788888888888774
No 448
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=67.17 E-value=12 Score=29.74 Aligned_cols=48 Identities=15% Similarity=0.012 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCc---------ccHHHHHHHHHHHHc
Q psy12642 84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGL---------ENIELAISHYLMAIN 133 (201)
Q Consensus 84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~---------~~~~~A~~~~~~al~ 133 (201)
..+|+.+++++.. .++|..|+.+|.++...|+. +-|.+|...+.+|=.
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~ 390 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANK 390 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhh
Confidence 4567788887764 56678999999999988821 125555555555543
No 449
>KOG4151|consensus
Probab=66.62 E-value=31 Score=29.98 Aligned_cols=95 Identities=18% Similarity=0.107 Sum_probs=71.0
Q ss_pred hhhccCHHHHHHHHHHHHhcCcccH----HHHHHHHHHHHH--cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642 10 CFHFFRYEEALEHLETIIKIDETNT----AARKRKICILKA--KNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD 83 (201)
Q Consensus 10 ~~~~~~~~~A~~~~~~~l~~~~~~~----~~~~~~a~~~~~--~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 83 (201)
++..+++..|.--|..++..-|.+. ......+.++.. .|++..++.-..-++...|....+....+.+|.-.+.
T Consensus 63 ~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k 142 (748)
T KOG4151|consen 63 LFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEALNK 142 (748)
T ss_pred HhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHH
Confidence 4566777777666777777666332 344445555554 5788889888888888889888888888888888888
Q ss_pred HHHHHHHHHHHhhcCCCCHHH
Q psy12642 84 YAKAVFCMEELFLHHPHNHLL 104 (201)
Q Consensus 84 ~~~A~~~~~~al~~~~~~~~~ 104 (201)
.+-|++.+.-.....|.++..
T Consensus 143 ~d~a~rdl~i~~~~~p~~~~~ 163 (748)
T KOG4151|consen 143 LDLAVRDLRIVEKMDPSNVSA 163 (748)
T ss_pred HHHHHHHHHHHhcCCCCcchH
Confidence 888888877777888888443
No 450
>KOG1464|consensus
Probab=65.42 E-value=59 Score=24.83 Aligned_cols=95 Identities=13% Similarity=0.127 Sum_probs=60.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcC-----CC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--CHHH
Q psy12642 39 RKICILKAKNKIPEAIKELTEYLKKFM-----TD-------QETWQELCDLYLSEGDYAKAVFCMEELFLHHPH--NHLL 104 (201)
Q Consensus 39 ~~a~~~~~~~~~~~A~~~~~~~~~~~p-----~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~ 104 (201)
.+|.+|+..+++.+-.+++.+....-. ++ .+++..-.+.|..+++-.+-...|++++.+.+- +|..
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI 229 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI 229 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH
Confidence 467777777777777777666544211 11 234444456777888888888888998876542 2322
Q ss_pred H----HHHHHHHHHcCCcccHHHHHHHHHHHHcCCc
Q psy12642 105 H----QRYADILYTQGGLENIELAISHYLMAINLNE 136 (201)
Q Consensus 105 ~----~~la~~~~~~~~~~~~~~A~~~~~~al~~~p 136 (201)
. ..=|..+...| ++++|-.-|-.+++...
T Consensus 230 mGvIRECGGKMHlreg---~fe~AhTDFFEAFKNYD 262 (440)
T KOG1464|consen 230 MGVIRECGGKMHLREG---EFEKAHTDFFEAFKNYD 262 (440)
T ss_pred HhHHHHcCCccccccc---hHHHHHhHHHHHHhccc
Confidence 2 22244555667 89999988888887653
No 451
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=65.28 E-value=61 Score=24.96 Aligned_cols=155 Identities=12% Similarity=0.091 Sum_probs=96.7
Q ss_pred HHHHhhhhccCHHHHHHHHHHHHhcCc--------ccHHHHHHHHHHHHHcCCHHHHHHHHHHH---HHhc--CCCHHHH
Q psy12642 5 VYIIGCFHFFRYEEALEHLETIIKIDE--------TNTAARKRKICILKAKNKIPEAIKELTEY---LKKF--MTDQETW 71 (201)
Q Consensus 5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~--------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~---~~~~--p~~~~~~ 71 (201)
-.+....+.+++++|+..|..++.... ........++.+|...|++..-....... ...+ |....+.
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence 345566778999999999999998731 12356677899999999876544444332 2222 2222233
Q ss_pred HHHHHHH-HhcCCHHHHHHHHHHHhhcCCCCH------HHHHHHHHHHHHcCCcccHHHHHHHHHHHHc----CC--ccc
Q psy12642 72 QELCDLY-LSEGDYAKAVFCMEELFLHHPHNH------LLHQRYADILYTQGGLENIELAISHYLMAIN----LN--EKN 138 (201)
Q Consensus 72 ~~l~~~~-~~~~~~~~A~~~~~~al~~~~~~~------~~~~~la~~~~~~~~~~~~~~A~~~~~~al~----~~--p~~ 138 (201)
..+-.-+ .....++.-+..++..++...... ..-..+...++..+ .|.+|+......+. .+ |+-
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~---~YsdalalIn~ll~ElKk~DDK~~L 164 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTG---KYSDALALINPLLHELKKYDDKINL 164 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHhhcCccce
Confidence 3222211 234456666666666665432221 23456677888999 99999987776653 22 344
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhh
Q psy12642 139 IRALYGLALSCHQVLTSAKCSAAK 162 (201)
Q Consensus 139 ~~~~~~l~~~~~~~~~~~~a~~~~ 162 (201)
...+..-..+|....+..++....
T Consensus 165 i~vhllESKvyh~irnv~KskaSL 188 (421)
T COG5159 165 ITVHLLESKVYHEIRNVSKSKASL 188 (421)
T ss_pred eehhhhhHHHHHHHHhhhhhhhHH
Confidence 567777888888888888875543
No 452
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=65.01 E-value=33 Score=21.73 Aligned_cols=43 Identities=21% Similarity=0.078 Sum_probs=22.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcC
Q psy12642 74 LCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQG 116 (201)
Q Consensus 74 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 116 (201)
.|.+-+..|+++.|.+.+.++-+..+..+..+..-+.+....|
T Consensus 65 ~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 65 RGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 4445555666666666666665554443334444444444433
No 453
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=64.51 E-value=34 Score=21.68 Aligned_cols=47 Identities=13% Similarity=0.006 Sum_probs=34.2
Q ss_pred HHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhh
Q psy12642 105 HQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT 154 (201)
Q Consensus 105 ~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 154 (201)
....|.+....| ++..|.+...++-+..+..+-++..-+++-...||
T Consensus 62 al~~Gl~al~~G---~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 62 ALSRGLIALAEG---DWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 344566778889 99999999999988766655565555666655553
No 454
>KOG3807|consensus
Probab=64.23 E-value=70 Score=25.22 Aligned_cols=112 Identities=14% Similarity=0.011 Sum_probs=69.4
Q ss_pred ccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--------------C---------CC--
Q psy12642 13 FFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKF--------------M---------TD-- 67 (201)
Q Consensus 13 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------------p---------~~-- 67 (201)
..+..+-++.-..+++++|....++..++.--. --..+|.+.++++++.. + .+
T Consensus 197 ERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl 274 (556)
T KOG3807|consen 197 ERNPPARIKAAYQALEINNECATAYVLLAEEEA--TTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVL 274 (556)
T ss_pred hcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchh
Confidence 355666677788899999999988888765321 22344455555444321 1 11
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCH--HHHHHHHHHHHHcCCcccHHHHHHHHH
Q psy12642 68 QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNH--LLHQRYADILYTQGGLENIELAISHYL 129 (201)
Q Consensus 68 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~la~~~~~~~~~~~~~~A~~~~~ 129 (201)
..+...++-|-.++|+..+|++.++...+-.|-.. ..+.++-+++.... -|.+....+-
T Consensus 275 ~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~Q---AYADvqavLa 335 (556)
T KOG3807|consen 275 VYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQ---AYADVQAVLA 335 (556)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 12345678888999999999999999888777322 23445555555555 4444444333
No 455
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=64.00 E-value=22 Score=23.60 Aligned_cols=35 Identities=14% Similarity=0.003 Sum_probs=21.7
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy12642 44 LKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLY 78 (201)
Q Consensus 44 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 78 (201)
++..-+.+.|..+|++++..+|++..++..+-+..
T Consensus 86 ~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~l 120 (139)
T PF12583_consen 86 WIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNL 120 (139)
T ss_dssp HHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHcc
Confidence 44445567777888888888888877776665443
No 456
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=63.55 E-value=38 Score=22.15 Aligned_cols=31 Identities=23% Similarity=0.383 Sum_probs=26.9
Q ss_pred HHHHHHHHHHcCCcccHHHHHHHHHHHHcCCccc
Q psy12642 105 HQRYADILYTQGGLENIELAISHYLMAINLNEKN 138 (201)
Q Consensus 105 ~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 138 (201)
...+|+.+...| ++++|..+|-+|+...|.-
T Consensus 66 qV~lGE~L~~~G---~~~~aa~hf~nAl~V~~qP 96 (121)
T PF02064_consen 66 QVQLGEQLLAQG---DYEEAAEHFYNALKVCPQP 96 (121)
T ss_dssp HHHHHHHHHHTT----HHHHHHHHHHHHHTSSSH
T ss_pred HHHHHHHHHhCC---CHHHHHHHHHHHHHhCCCH
Confidence 467899999999 9999999999999999883
No 457
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=62.68 E-value=70 Score=24.71 Aligned_cols=99 Identities=7% Similarity=-0.043 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHH---HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCH---HH
Q psy12642 34 TAARKRKICILKAKNKIPEAIKELTEYLKKFMTD---QET---WQELCDLYLSEGDYAKAVFCMEELFLHHPHNH---LL 104 (201)
Q Consensus 34 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~---~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~---~~ 104 (201)
..++..+|..|...++.+.+.+++.+.++..... .++ ...+|.+|-.+.=.++.++..+..++...+-. ..
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 4788899999999999999998888877643221 222 33467777776667788888877776654311 23
Q ss_pred HHHHHHHHHHcCCcccHHHHHHHHHHHHcCC
Q psy12642 105 HQRYADILYTQGGLENIELAISHYLMAINLN 135 (201)
Q Consensus 105 ~~~la~~~~~~~~~~~~~~A~~~~~~al~~~ 135 (201)
-...|....... ++.+|-..+...+...
T Consensus 195 K~Y~Gi~~m~~R---nFkeAa~Ll~d~l~tF 222 (412)
T COG5187 195 KVYKGIFKMMRR---NFKEAAILLSDILPTF 222 (412)
T ss_pred HHHHHHHHHHHH---hhHHHHHHHHHHhccc
Confidence 344455555556 7888887777776544
No 458
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=62.35 E-value=30 Score=20.46 Aligned_cols=12 Identities=8% Similarity=0.152 Sum_probs=4.6
Q ss_pred HHHHHHHHcCCc
Q psy12642 125 ISHYLMAINLNE 136 (201)
Q Consensus 125 ~~~~~~al~~~p 136 (201)
++.|..+++..|
T Consensus 33 ie~l~~~lk~e~ 44 (77)
T cd02683 33 IDLLMQVLKGTK 44 (77)
T ss_pred HHHHHHHHhhCC
Confidence 333333333444
No 459
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=62.21 E-value=16 Score=17.21 Aligned_cols=13 Identities=31% Similarity=0.401 Sum_probs=6.2
Q ss_pred cHHHHHHHHHHHH
Q psy12642 120 NIELAISHYLMAI 132 (201)
Q Consensus 120 ~~~~A~~~~~~al 132 (201)
+..+|+.+|+++.
T Consensus 20 d~~~A~~~~~~Aa 32 (36)
T smart00671 20 DLEKALEYYKKAA 32 (36)
T ss_pred CHHHHHHHHHHHH
Confidence 4444444444443
No 460
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=61.95 E-value=21 Score=20.36 Aligned_cols=15 Identities=27% Similarity=0.468 Sum_probs=6.8
Q ss_pred cCCHHHHHHHHHHHh
Q psy12642 81 EGDYAKAVFCMEELF 95 (201)
Q Consensus 81 ~~~~~~A~~~~~~al 95 (201)
.|++++|+.+|.+++
T Consensus 18 ~g~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 18 AGNYEEALELYKEAI 32 (69)
T ss_dssp TTSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 444444444444443
No 461
>KOG4056|consensus
Probab=61.85 E-value=27 Score=23.31 Aligned_cols=34 Identities=15% Similarity=0.161 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHH
Q psy12642 73 ELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQ 106 (201)
Q Consensus 73 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 106 (201)
.+|.-++.+|+++++..++-.+|.+.|....++.
T Consensus 86 ~lGE~L~~qg~~e~ga~h~~nAi~vcgqpaqLL~ 119 (143)
T KOG4056|consen 86 QLGEELLAQGNEEEGAEHLANAIVVCGQPAQLLQ 119 (143)
T ss_pred HhHHHHHHccCHHHHHHHHHHHHhhcCCHHHHHH
Confidence 4788899999999999999999998888665543
No 462
>PRK11619 lytic murein transglycosylase; Provisional
Probab=60.96 E-value=1.1e+02 Score=26.46 Aligned_cols=128 Identities=9% Similarity=-0.042 Sum_probs=68.0
Q ss_pred HHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH---HhcCC
Q psy12642 7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLY---LSEGD 83 (201)
Q Consensus 7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~---~~~~~ 83 (201)
+....+.|++.++.....++ ...|-.+.+-+ ..+....+. .....+...++.+|+.|.......... .+.++
T Consensus 40 A~~a~~~g~~~~~~~~~~~l-~d~pL~~yl~y--~~L~~~l~~--~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~ 114 (644)
T PRK11619 40 IKQAWDNRQMDVVEQLMPTL-KDYPLYPYLEY--RQLTQDLMN--QPAVQVTNFIRANPTLPPARSLQSRFVNELARRED 114 (644)
T ss_pred HHHHHHCCCHHHHHHHHHhc-cCCCcHhHHHH--HHHHhcccc--CCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccC
Confidence 44455666666665544432 33343222211 111112221 122255566677787766554443333 23455
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHH
Q psy12642 84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLA 146 (201)
Q Consensus 84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 146 (201)
+..-+.++ ...|.+....+.++......| +.++|.....+........+.....+-
T Consensus 115 w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G---~~~~A~~~a~~lW~~g~~~p~~cd~l~ 170 (644)
T PRK11619 115 WRGLLAFS----PEKPKPVEARCNYYYAKWATG---QQQEAWQGAKELWLTGKSLPNACDKLF 170 (644)
T ss_pred HHHHHHhc----CCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhccCCCCChHHHHHH
Confidence 66555422 234778888888888888888 777777777777665544333333333
No 463
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=60.86 E-value=14 Score=21.74 Aligned_cols=13 Identities=23% Similarity=0.409 Sum_probs=5.8
Q ss_pred cHHHHHHHHHHHH
Q psy12642 120 NIELAISHYLMAI 132 (201)
Q Consensus 120 ~~~~A~~~~~~al 132 (201)
+|++|..+|..++
T Consensus 21 ~y~eA~~~Y~~~i 33 (75)
T cd02677 21 DYEAAFEFYRAGV 33 (75)
T ss_pred hHHHHHHHHHHHH
Confidence 4444444444443
No 464
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=60.22 E-value=22 Score=21.10 Aligned_cols=16 Identities=44% Similarity=0.700 Sum_probs=8.5
Q ss_pred hcCCHHHHHHHHHHHh
Q psy12642 80 SEGDYAKAVFCMEELF 95 (201)
Q Consensus 80 ~~~~~~~A~~~~~~al 95 (201)
..|+|++|+.+|..++
T Consensus 18 ~~g~y~eA~~~Y~~ai 33 (76)
T cd02681 18 QEGRYSEAVFYYKEAA 33 (76)
T ss_pred HccCHHHHHHHHHHHH
Confidence 4555555555555544
No 465
>KOG1497|consensus
Probab=60.12 E-value=81 Score=24.66 Aligned_cols=94 Identities=18% Similarity=0.170 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CC--C----HHHHHHHHHHHHhcCCHHHHHHHHHHHhh--cCCCCHHHH
Q psy12642 35 AARKRKICILKAKNKIPEAIKELTEYLKKF-MT--D----QETWQELCDLYLSEGDYAKAVFCMEELFL--HHPHNHLLH 105 (201)
Q Consensus 35 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~--~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~ 105 (201)
.+...++.+|-..++|..|...+...-... |. + ...+..+|.+|+..++..+|..+.+++.- .+..|....
T Consensus 104 ~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~Lq 183 (399)
T KOG1497|consen 104 SIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQLQ 183 (399)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHH
Confidence 566778999999999998877665422111 11 1 23566789999999999999888887753 344555543
Q ss_pred ----HHHHHHHHHcCCcccHHHHHHHHHHH
Q psy12642 106 ----QRYADILYTQGGLENIELAISHYLMA 131 (201)
Q Consensus 106 ----~~la~~~~~~~~~~~~~~A~~~~~~a 131 (201)
...|.++-..+ ++-+|...|-+.
T Consensus 184 ie~kvc~ARvlD~kr---kFlEAAqrYyel 210 (399)
T KOG1497|consen 184 IEYKVCYARVLDYKR---KFLEAAQRYYEL 210 (399)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 34455555555 555555444443
No 466
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=60.04 E-value=1e+02 Score=25.87 Aligned_cols=138 Identities=14% Similarity=0.058 Sum_probs=74.7
Q ss_pred HHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CC-----CHHHHHHHHHHH
Q psy12642 5 VYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKF-MT-----DQETWQELCDLY 78 (201)
Q Consensus 5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~-----~~~~~~~l~~~~ 78 (201)
..+.+|... ..++-...+++..+.+-++...-..++..|-. ++...+...|.+++... |. -.++|..+-.
T Consensus 104 el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~-- 179 (711)
T COG1747 104 ELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPE-- 179 (711)
T ss_pred HHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHH--
Confidence 333344443 55556667777777776666666666666655 88888888888887643 21 1234444322
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHH---HHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Q psy12642 79 LSEGDYAKAVFCMEELFLHHPHNHLLHQRYADI---LYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH 150 (201)
Q Consensus 79 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~---~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 150 (201)
+--.+.+.-+....+.-..... ...-..+-.+ |.... ++++|++.+...++.+..+..+.-++..-.+
T Consensus 180 ~i~dD~D~fl~l~~kiqt~lg~-~~~~Vl~qdv~~~Ys~~e---N~~eai~Ilk~il~~d~k~~~ar~~~i~~lR 250 (711)
T COG1747 180 LIGDDKDFFLRLQKKIQTKLGE-GRGSVLMQDVYKKYSENE---NWTEAIRILKHILEHDEKDVWARKEIIENLR 250 (711)
T ss_pred hccccHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHhcccc---CHHHHHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence 1123334333333333222221 1111222222 22333 8888888888888888777766665554443
No 467
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=59.54 E-value=48 Score=26.35 Aligned_cols=62 Identities=16% Similarity=0.066 Sum_probs=47.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcC-CCC--------HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc
Q psy12642 73 ELCDLYLSEGDYAKAVFCMEELFLHH-PHN--------HLLHQRYADILYTQGGLENIELAISHYLMAINLNEK 137 (201)
Q Consensus 73 ~l~~~~~~~~~~~~A~~~~~~al~~~-~~~--------~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 137 (201)
.+-.+|++.++++-+...++.....+ |+- ...++.+|.++.... ++.+|...++.++...|.
T Consensus 182 lL~~iY~Rl~~~~l~~n~lka~~~vs~~Di~~~~~sq~v~f~YYLG~~~l~~e---n~heA~~~L~~aFl~c~~ 252 (413)
T COG5600 182 LLFQIYLRLGRFKLCENFLKASKEVSMPDISEYQKSQVVVFHYYLGIYYLLNE---NFHEAFLHLNEAFLQCPW 252 (413)
T ss_pred HHHHHHHHhccHHHHHHHHHhcccccccccchhhhcceeehhhHHHHHHHHHH---hHHHHHHHHHHHHHhChh
Confidence 35578999999988876665443322 221 236789999999999 999999999999999887
No 468
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=59.32 E-value=45 Score=26.16 Aligned_cols=46 Identities=20% Similarity=0.293 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q psy12642 53 AIKELTEYLKKFMTD---QETWQELCDLYLSEGDYAKAVFCMEELFLHH 98 (201)
Q Consensus 53 A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 98 (201)
....++..+..-|+- ...|..++.+.-..|.++..+..|++|+...
T Consensus 122 i~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~ag 170 (353)
T PF15297_consen 122 ILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAG 170 (353)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcC
Confidence 333444444444432 3344444444444555555555555554443
No 469
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=57.52 E-value=3.4 Score=34.40 Aligned_cols=86 Identities=13% Similarity=0.038 Sum_probs=0.0
Q ss_pred HHhhhhccCHHHHHHHHHHHHh--cCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhcCCC--HHHHHHHHHHHHh
Q psy12642 7 IIGCFHFFRYEEALEHLETIIK--IDE-TNTAARKRKICILKAKNKIPEAIKELTEY-LKKFMTD--QETWQELCDLYLS 80 (201)
Q Consensus 7 ~~~~~~~~~~~~A~~~~~~~l~--~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-~~~~p~~--~~~~~~l~~~~~~ 80 (201)
+..+...|++..|...+..+-. ..| .........+.+....|+++.|+..+... ...-|.. ...+...+.++..
T Consensus 31 a~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l~A~a~~~ 110 (536)
T PF04348_consen 31 ARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQLRAQAYEQ 110 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHHHHHHHHHh
Confidence 3456667777777777776552 122 22344445566677777777777776531 1111111 2234445666666
Q ss_pred cCCHHHHHHHHH
Q psy12642 81 EGDYAKAVFCME 92 (201)
Q Consensus 81 ~~~~~~A~~~~~ 92 (201)
.|++-+|...+-
T Consensus 111 ~~~~l~Aa~~~i 122 (536)
T PF04348_consen 111 QGDPLAAARERI 122 (536)
T ss_dssp ------------
T ss_pred cCCHHHHHHHHH
Confidence 676666655443
No 470
>KOG0687|consensus
Probab=56.84 E-value=95 Score=24.39 Aligned_cols=99 Identities=14% Similarity=0.043 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---CHH---HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHH----
Q psy12642 34 TAARKRKICILKAKNKIPEAIKELTEYLKKFMT---DQE---TWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHL---- 103 (201)
Q Consensus 34 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---~~~---~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~---- 103 (201)
..++...+..|++.|+-+.|++.+.+.....-. ..+ ....+|.+|....-..+.++..+..++...+ +.
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgD-WeRrNR 182 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGD-WERRNR 182 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC-hhhhhh
Confidence 478889999999999999999998877664321 122 3344677777666566666666666654433 32
Q ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCc
Q psy12642 104 LHQRYADILYTQGGLENIELAISHYLMAINLNE 136 (201)
Q Consensus 104 ~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p 136 (201)
.....|....... ++.+|-..|..++....
T Consensus 183 lKvY~Gly~msvR---~Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 183 LKVYQGLYCMSVR---NFKEAADLFLDSVSTFT 212 (393)
T ss_pred HHHHHHHHHHHHH---hHHHHHHHHHHHccccc
Confidence 3334455555566 78888888888776543
No 471
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=56.61 E-value=3.6 Score=34.26 Aligned_cols=110 Identities=15% Similarity=0.045 Sum_probs=0.0
Q ss_pred HHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH--h
Q psy12642 22 HLETIIKIDE-TNTAARKRKICILKAKNKIPEAIKELTEYL--KKFMTD-QETWQELCDLYLSEGDYAKAVFCMEEL--F 95 (201)
Q Consensus 22 ~~~~~l~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~--~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a--l 95 (201)
++.++-...+ .-......-+..+...|++..|...+.+.- .+.|.. .......+.+...+|+++.|+..+... .
T Consensus 11 yL~~A~~a~~~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~ 90 (536)
T PF04348_consen 11 YLQQAQQASGEQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLW 90 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcCcHhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcc
Confidence 3444433333 233455556778999999999999998766 233333 344455688899999999999998741 1
Q ss_pred hcCCC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcC
Q psy12642 96 LHHPH-NHLLHQRYADILYTQGGLENIELAISHYLMAINL 134 (201)
Q Consensus 96 ~~~~~-~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~ 134 (201)
.+.+. -...+...+.++...+ ++-+|.+.+-..-.+
T Consensus 91 ~l~~~~~~~~~~l~A~a~~~~~---~~l~Aa~~~i~l~~l 127 (536)
T PF04348_consen 91 QLPPEQQARYHQLRAQAYEQQG---DPLAAARERIALDPL 127 (536)
T ss_dssp ----------------------------------------
T ss_pred cCCHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhh
Confidence 11111 2335566788888888 777776665544333
No 472
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=56.36 E-value=49 Score=26.30 Aligned_cols=61 Identities=16% Similarity=0.101 Sum_probs=46.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-cCCC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q psy12642 40 KICILKAKNKIPEAIKELTEYLKK-FMTD--------QETWQELCDLYLSEGDYAKAVFCMEELFLHHPH 100 (201)
Q Consensus 40 ~a~~~~~~~~~~~A~~~~~~~~~~-~p~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 100 (201)
+-.+|++.++++-+...++..... .|+. ....+.+|.+|+.+.++.+|-..+++++...|.
T Consensus 183 L~~iY~Rl~~~~l~~n~lka~~~vs~~Di~~~~~sq~v~f~YYLG~~~l~~en~heA~~~L~~aFl~c~~ 252 (413)
T COG5600 183 LFQIYLRLGRFKLCENFLKASKEVSMPDISEYQKSQVVVFHYYLGIYYLLNENFHEAFLHLNEAFLQCPW 252 (413)
T ss_pred HHHHHHHhccHHHHHHHHHhcccccccccchhhhcceeehhhHHHHHHHHHHhHHHHHHHHHHHHHhChh
Confidence 445788999998887776654331 2222 236778999999999999999999999988886
No 473
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=56.01 E-value=36 Score=23.12 Aligned_cols=33 Identities=12% Similarity=0.215 Sum_probs=26.9
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHhhcCCCCHHHH
Q psy12642 73 ELCDLYLSEG-DYAKAVFCMEELFLHHPHNHLLH 105 (201)
Q Consensus 73 ~l~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~ 105 (201)
.+|..+...| +.+++..+|-.||...|....++
T Consensus 95 ~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~LL 128 (148)
T TIGR00985 95 QLGEELMAQGTNVDEGAVHFYNALKVYPQPQQLL 128 (148)
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHhCCCHHHHH
Confidence 4788888888 89999999999999988854443
No 474
>KOG1497|consensus
Probab=55.93 E-value=98 Score=24.25 Aligned_cols=84 Identities=15% Similarity=0.109 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC----C----HHHHHHHHHHHHHcCCcccHHHHHHHHHHHH--cCCcccH
Q psy12642 70 TWQELCDLYLSEGDYAKAVFCMEELFLHHPH----N----HLLHQRYADILYTQGGLENIELAISHYLMAI--NLNEKNI 139 (201)
Q Consensus 70 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~----~----~~~~~~la~~~~~~~~~~~~~~A~~~~~~al--~~~p~~~ 139 (201)
....++.+|.+.++|..|...+.- +..+.+ + ...+..+|..|...+ +..+|..+..++- ..+..|+
T Consensus 105 irl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe~~---d~veae~~inRaSil~a~~~Ne 180 (399)
T KOG1497|consen 105 IRLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLEDD---DKVEAEAYINRASILQAESSNE 180 (399)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHhhhcccCH
Confidence 556789999999999999887753 333321 1 235778899999999 8888888877753 3334677
Q ss_pred HHHHHHHHHHHHhhhhhh
Q psy12642 140 RALYGLALSCHQVLTSAK 157 (201)
Q Consensus 140 ~~~~~l~~~~~~~~~~~~ 157 (201)
......-.||.+.-++.+
T Consensus 181 ~Lqie~kvc~ARvlD~kr 198 (399)
T KOG1497|consen 181 QLQIEYKVCYARVLDYKR 198 (399)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777778888887666543
No 475
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=52.67 E-value=64 Score=21.17 Aligned_cols=25 Identities=12% Similarity=0.041 Sum_probs=15.5
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcC
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKID 30 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~ 30 (201)
.+.++...|+.+....+++.....+
T Consensus 8 ii~al~r~g~~~~i~~~i~~~WgI~ 32 (126)
T PF12921_consen 8 IIYALGRSGQLDSIKSYIKSVWGID 32 (126)
T ss_pred HHHHHhhcCCHHHHHHHHHHhcCCC
Confidence 4455556677776666666665554
No 476
>KOG0276|consensus
Probab=52.45 E-value=1.3e+02 Score=25.83 Aligned_cols=99 Identities=12% Similarity=0.042 Sum_probs=57.7
Q ss_pred hccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12642 12 HFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCM 91 (201)
Q Consensus 12 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 91 (201)
+.|+++.|.++..+ .++..-|..+|.+....+++..|.+++.++.... .|-.++...|+-+.-...-
T Consensus 649 ~lgrl~iA~~la~e-----~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~--------~LlLl~t~~g~~~~l~~la 715 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVE-----ANSEVKWRQLGDAALSAGELPLASECFLRARDLG--------SLLLLYTSSGNAEGLAVLA 715 (794)
T ss_pred hcCcHHHHHHHHHh-----hcchHHHHHHHHHHhhcccchhHHHHHHhhcchh--------hhhhhhhhcCChhHHHHHH
Confidence 45566655554333 4667788999999999999999999999876532 1222333444443222222
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Q psy12642 92 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMA 131 (201)
Q Consensus 92 ~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~a 131 (201)
..+-+....|... .+++..| +++++++.+...
T Consensus 716 ~~~~~~g~~N~AF-----~~~~l~g---~~~~C~~lLi~t 747 (794)
T KOG0276|consen 716 SLAKKQGKNNLAF-----LAYFLSG---DYEECLELLIST 747 (794)
T ss_pred HHHHhhcccchHH-----HHHHHcC---CHHHHHHHHHhc
Confidence 2222222222211 2446677 888888777654
No 477
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=52.32 E-value=1.2e+02 Score=24.22 Aligned_cols=61 Identities=21% Similarity=0.246 Sum_probs=45.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH--HHHHHH--HHHHhcCCHHHHHHHHHHHhhc
Q psy12642 37 RKRKICILKAKNKIPEAIKELTEYLKKFMTDQE--TWQELC--DLYLSEGDYAKAVFCMEELFLH 97 (201)
Q Consensus 37 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~--~~~~l~--~~~~~~~~~~~A~~~~~~al~~ 97 (201)
....+.-++..++|..|...+..+...-|.+.. .+..++ .-++..-++.+|...++..+..
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345566788899999999999999886454443 444443 4456788999999999988765
No 478
>KOG4279|consensus
Probab=52.27 E-value=58 Score=28.64 Aligned_cols=122 Identities=11% Similarity=0.010 Sum_probs=65.3
Q ss_pred hccCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q psy12642 12 HFFRYEEALEHLETIIKID-ETNTAARKRKICILKA---------KNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSE 81 (201)
Q Consensus 12 ~~~~~~~A~~~~~~~l~~~-~~~~~~~~~~a~~~~~---------~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 81 (201)
+-|+-++|+...-.+++.. |-.+..+...|.+|.. .+..+.|+++|+++.+..|.-.... +++.++...
T Consensus 255 r~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGI-N~atLL~aa 333 (1226)
T KOG4279|consen 255 RPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGI-NLATLLRAA 333 (1226)
T ss_pred CCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccc-cHHHHHHHh
Confidence 3577788888777777754 3444555555555543 3456778888888888777543221 233333333
Q ss_pred CC-HHHHHHHHHHHhhcCC-----CC---HHHHHHHHHHH---HHcCCcccHHHHHHHHHHHHcCCcc
Q psy12642 82 GD-YAKAVFCMEELFLHHP-----HN---HLLHQRYADIL---YTQGGLENIELAISHYLMAINLNEK 137 (201)
Q Consensus 82 ~~-~~~A~~~~~~al~~~~-----~~---~~~~~~la~~~---~~~~~~~~~~~A~~~~~~al~~~p~ 137 (201)
|+ |+...+.-.-+.+++. .+ ...+...|..+ .-.+ ++.+|+..-+..+++.|.
T Consensus 334 G~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAn---d~~kaiqAae~mfKLk~P 398 (1226)
T KOG4279|consen 334 GEHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLAN---DYQKAIQAAEMMFKLKPP 398 (1226)
T ss_pred hhhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhcc---CHHHHHHHHHHHhccCCc
Confidence 32 3333332222222211 11 11111112111 2234 899999999999998876
No 479
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=51.89 E-value=66 Score=21.10 Aligned_cols=27 Identities=7% Similarity=-0.058 Sum_probs=15.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy12642 37 RKRKICILKAKNKIPEAIKELTEYLKK 63 (201)
Q Consensus 37 ~~~~a~~~~~~~~~~~A~~~~~~~~~~ 63 (201)
+..+..++...|+.+....++++.-..
T Consensus 5 ~~~ii~al~r~g~~~~i~~~i~~~WgI 31 (126)
T PF12921_consen 5 LCNIIYALGRSGQLDSIKSYIKSVWGI 31 (126)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHhcCC
Confidence 334455556667776666666555443
No 480
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=51.59 E-value=63 Score=20.77 Aligned_cols=76 Identities=14% Similarity=-0.070 Sum_probs=34.5
Q ss_pred HcCCHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHH
Q psy12642 46 AKNKIPEAIKELTEYLKKFMTDQ-ETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELA 124 (201)
Q Consensus 46 ~~~~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A 124 (201)
..-..++|..+.+= +...++.. .+.......+..+|+|++| +.......-.|...|+ +.+-.+.| --+++
T Consensus 18 G~HcH~EA~tIa~w-L~~~~~~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~~~pdL~p~~--AL~a~klG---L~~~~ 88 (116)
T PF09477_consen 18 GHHCHQEANTIADW-LEQEGEMEEVVALIRLSSLMNRGDYQEA---LLLPQCHCYPDLEPWA--ALCAWKLG---LASAL 88 (116)
T ss_dssp TTT-HHHHHHHHHH-HHHTTTTHHHHHHHHHHHHHHTT-HHHH---HHHHTTS--GGGHHHH--HHHHHHCT----HHHH
T ss_pred hhHHHHHHHHHHHH-HHhCCcHHHHHHHHHHHHHHhhHHHHHH---HHhcccCCCccHHHHH--HHHHHhhc---cHHHH
Confidence 33445566544433 33334432 2333345566777777777 3333322222233333 33445666 55666
Q ss_pred HHHHHH
Q psy12642 125 ISHYLM 130 (201)
Q Consensus 125 ~~~~~~ 130 (201)
...+.+
T Consensus 89 e~~l~r 94 (116)
T PF09477_consen 89 ESRLTR 94 (116)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666653
No 481
>KOG4279|consensus
Probab=51.34 E-value=1.3e+02 Score=26.67 Aligned_cols=107 Identities=14% Similarity=0.128 Sum_probs=63.6
Q ss_pred HHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhc-----CCC-------HHHHHH
Q psy12642 7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNK-IPEAIKELTEYLKKF-----MTD-------QETWQE 73 (201)
Q Consensus 7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~-----p~~-------~~~~~~ 73 (201)
...|.+.+..+.|+.+|.++++..|....- ..++.++...|+ ++...+.-.-.+.++ ... .++-+.
T Consensus 294 ~S~ytDa~s~~~a~~WyrkaFeveP~~~sG-IN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y 372 (1226)
T KOG4279|consen 294 ASNYTDAESLNHAIEWYRKAFEVEPLEYSG-INLATLLRAAGEHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATY 372 (1226)
T ss_pred ccCCcchhhHHHHHHHHHHHhccCchhhcc-ccHHHHHHHhhhhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHh
Confidence 344666778889999999999999875422 234455554443 333333222222221 011 111111
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHc
Q psy12642 74 LCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQ 115 (201)
Q Consensus 74 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 115 (201)
++ +-.-.++|.+|+..-+...++.|..+..-..++.+....
T Consensus 373 ~~-asVLAnd~~kaiqAae~mfKLk~P~WYLkS~meni~l~~ 413 (1226)
T KOG4279|consen 373 FE-ASVLANDYQKAIQAAEMMFKLKPPVWYLKSTMENILLIN 413 (1226)
T ss_pred hh-hhhhccCHHHHHHHHHHHhccCCceehHHHHHHHHHHHH
Confidence 21 123468999999999999999998877766666665543
No 482
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=50.79 E-value=71 Score=21.13 Aligned_cols=58 Identities=12% Similarity=0.005 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCC---------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q psy12642 38 KRKICILKAKNKIPEAIKELTEYLKKFMT---------------DQETWQELCDLYLSEGDYAKAVFCMEELF 95 (201)
Q Consensus 38 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al 95 (201)
..+|...+..+++-.++-+|++++....+ ......+++.++..+|+.+=.+++++-+.
T Consensus 5 tllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlAS 77 (140)
T PF10952_consen 5 TLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLAS 77 (140)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHH
Confidence 34555556666666666666665542111 01245678999999999999999887554
No 483
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=49.52 E-value=1.4e+02 Score=24.15 Aligned_cols=112 Identities=13% Similarity=0.003 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH------HHHHHHHHHHHhcCC--------------HHHHHHHHHHH
Q psy12642 35 AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ------ETWQELCDLYLSEGD--------------YAKAVFCMEEL 94 (201)
Q Consensus 35 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~~~--------------~~~A~~~~~~a 94 (201)
.....+|...+-.++|+.|...|+.+.+..-+|. .+....|.+.+..+. ++.|...|.+.
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~ 288 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKS 288 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhh
Confidence 3445689999999999999999999888665442 122234444444442 23333344432
Q ss_pred h----hcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcC--Cc--c---cHHHHHHHHHHH
Q psy12642 95 F----LHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL--NE--K---NIRALYGLALSC 149 (201)
Q Consensus 95 l----~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~--~p--~---~~~~~~~l~~~~ 149 (201)
- .............+.++...+ .+.+|...+-+.... .. . ..-.+-.++.|+
T Consensus 289 ~~~~~~~~~~a~R~~ll~~ell~~~~---~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~ 351 (414)
T PF12739_consen 289 ALPRCSLPYYALRCALLLAELLKSRG---GYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCY 351 (414)
T ss_pred hccccccccchHHHHHHHHHHHHhcC---ccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhh
Confidence 1 111123345566677777778 777776666665544 22 2 334555677777
No 484
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=48.92 E-value=10 Score=25.07 Aligned_cols=49 Identities=18% Similarity=0.140 Sum_probs=32.7
Q ss_pred hhhccCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy12642 10 CFHFFRYEEALEHLETIIKID-ETNTAARKRKICILKAKNKIPEAIKELT 58 (201)
Q Consensus 10 ~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 58 (201)
+.+.+.......+++.++..+ ..++..+..++.+|...+..+....+++
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 17 FEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344566777777777777554 4457777778888888776677766665
No 485
>KOG4014|consensus
Probab=48.59 E-value=99 Score=22.18 Aligned_cols=117 Identities=12% Similarity=-0.014 Sum_probs=78.5
Q ss_pred cccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-----hcCCHHHHHHHHHHHhhcCCCCHHH
Q psy12642 31 ETNTAARKRKICILK-AKNKIPEAIKELTEYLKKFMTDQETWQELCDLYL-----SEGDYAKAVFCMEELFLHHPHNHLL 104 (201)
Q Consensus 31 ~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-----~~~~~~~A~~~~~~al~~~~~~~~~ 104 (201)
...|..-.+++..+- -+.++++|.+.|..--..+. .+...+.+|..++ ..++...|++.+..+-. .+.+.+
T Consensus 31 EK~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~a 107 (248)
T KOG4014|consen 31 EKRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQA 107 (248)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHH
Confidence 344566667776544 35788888888876544332 3455566665443 24568899999988764 667888
Q ss_pred HHHHHHHHHHcCC----cccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHh
Q psy12642 105 HQRYADILYTQGG----LENIELAISHYLMAINLNEKNIRALYGLALSCHQV 152 (201)
Q Consensus 105 ~~~la~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 152 (201)
...+|.++..... .-+..+|.+++.++..+. +..+-+.|+..|..-
T Consensus 108 C~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g 157 (248)
T KOG4014|consen 108 CRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGG 157 (248)
T ss_pred HhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhcc
Confidence 8888887765431 125889999999998875 455667777776543
No 486
>PF08771 Rapamycin_bind: Rapamycin binding domain; InterPro: IPR009076 Rapamycin and FK506 are potent immunosuppressive agents that bind to the FK506-binding protein (FKBP12), inhibiting its peptidyl-prolyl isomerase activity. The rapamycin-FKBP12 complex can then bind to and inhibit the FKBP12-rapamycin-associated protein (FRAP) in humans and RAFT1 in rats, causing cell-cycle arrest []. The FK506-FKBP12 complex cannot bind FRAP, but can bind to and inhibit calcineurin. Rapamycin is able to bind to two proteins, FKBP12 and FRAP, by simultaneously occupying two hydrophobic binding pockets, thereby linking these two proteins together to form a dimer []. The structure of the FKBP12-rapamycin-binding domain of FRAP consists of a core bundle of four helices arranged up-and-down in a left-handed twist. FRAP has been shown to interact in vitro with CLIP-170, a protein involved in microtubule organisation and function []. FRAP is thought to act as a kinase to phosphorylate CLIP-170, thereby regulating its binding to microtubules. FRAP is also thought to cooperate with p85/p110 phosphatidylinositol 3-kinase (PI3K) to induce the activation of the serine/threonine kinase p70 S6 kinase (p70S6K), which in turn phosphorylates the 40S ribosomal protein S6, thereby altering the translation of ribosomal proteins and translation elongation factors [].; GO: 0016772 transferase activity, transferring phosphorus-containing groups; PDB: 2NPU_A 2RSE_B 4FAP_B 1AUE_A 2GAQ_A 1FAP_B 2FAP_B 3FAP_B 1NSG_B.
Probab=48.01 E-value=68 Score=20.11 Aligned_cols=76 Identities=11% Similarity=-0.049 Sum_probs=35.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCc--ccHHHHHHHHHHHHHh
Q psy12642 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNE--KNIRALYGLALSCHQV 152 (201)
Q Consensus 75 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~ 152 (201)
...|+..++++..+..++.....-...|.+..-...+..... +..+|.+++++...... +-..+|.....+|.+.
T Consensus 21 s~~y~~~~n~~~m~~~L~pLh~~l~k~PeT~~E~~F~~~fg~---~L~~A~~~~~~y~~t~~~~~l~~aW~~y~~v~~~i 97 (100)
T PF08771_consen 21 SRLYFGENNVEKMFKILEPLHEMLEKGPETLREVSFAQAFGR---DLQEAREWLKRYERTGDETDLNQAWDIYYQVYRRI 97 (100)
T ss_dssp HHHHHTTT-HHHHHHHHHHHHHHHHHS-SSHHHHHHHHHHHH---HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---HHHHHHHHHHHHhhhCCHhhHHHHHHHHHHHHHHH
Confidence 445566777777777766665432222222222222222333 56666666666554322 1223555555555544
Q ss_pred h
Q psy12642 153 L 153 (201)
Q Consensus 153 ~ 153 (201)
.
T Consensus 98 ~ 98 (100)
T PF08771_consen 98 K 98 (100)
T ss_dssp T
T ss_pred h
Confidence 3
No 487
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=47.25 E-value=75 Score=20.42 Aligned_cols=75 Identities=11% Similarity=-0.104 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12642 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEEL 94 (201)
Q Consensus 15 ~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 94 (201)
.+++|..+.+=.-........+..-+...+..+|+|++|+ ..... ...|+.-..++.+-.+.|--.++...+.+.
T Consensus 21 cH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~AL---l~~~~--~~~pdL~p~~AL~a~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEAL---LLPQC--HCYPDLEPWAALCAWKLGLASALESRLTRL 95 (116)
T ss_dssp -HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHHH---HHHTT--S--GGGHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHH---Hhccc--CCCccHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 5677777766655555444555555666778889888882 22222 223334444556667888888888777754
No 488
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=46.91 E-value=1.4e+02 Score=23.54 Aligned_cols=55 Identities=22% Similarity=0.179 Sum_probs=44.5
Q ss_pred hcCCH-HHHHHHHHHHhhcCCCC---HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc
Q psy12642 80 SEGDY-AKAVFCMEELFLHHPHN---HLLHQRYADILYTQGGLENIELAISHYLMAINLNEK 137 (201)
Q Consensus 80 ~~~~~-~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 137 (201)
..|-. ++....++.++..-|+- +.+|..++.+....| .+++.+..|++|+.....
T Consensus 114 ~eGcp~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~---~~e~vi~iyEeAi~agAq 172 (353)
T PF15297_consen 114 EEGCPKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTG---PIEDVIAIYEEAILAGAQ 172 (353)
T ss_pred HcCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcC---CHHHHHHHHHHHHHcCCC
Confidence 44543 57777888888877753 568999999999999 899999999999988755
No 489
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=46.73 E-value=59 Score=26.37 Aligned_cols=23 Identities=26% Similarity=0.327 Sum_probs=18.1
Q ss_pred HHhhhhccCHHHHHHHHHHHHhc
Q psy12642 7 IIGCFHFFRYEEALEHLETIIKI 29 (201)
Q Consensus 7 ~~~~~~~~~~~~A~~~~~~~l~~ 29 (201)
+..++..|+|.+|+..|..++..
T Consensus 211 gyk~~t~gKF~eA~~~Fr~iL~~ 233 (422)
T PF06957_consen 211 GYKLFTAGKFEEAIEIFRSILHS 233 (422)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHH
Confidence 45678899999999999988864
No 490
>KOG4459|consensus
Probab=45.26 E-value=36 Score=27.65 Aligned_cols=82 Identities=12% Similarity=0.067 Sum_probs=51.9
Q ss_pred HhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHH
Q psy12642 8 IGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKA 87 (201)
Q Consensus 8 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A 87 (201)
.++++.|+..+|++.-...+--+|++..+...+-..-...|..+.-+. ++.+.....|+.++.-.+..+++..+
T Consensus 141 ~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyYq~~l~~s~d~l~------DlE~~~~~~~Fir~v~~y~~~d~~~~ 214 (471)
T KOG4459|consen 141 FAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYYQTMLGVSEDELT------DLERREHEQWFIRGVRLYSGEDPRQC 214 (471)
T ss_pred HHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHHHhccCCCccccc------ccccchHHHHHHHHhhhccccCchhc
Confidence 568888999999988888888888887777666554434444333222 22334455666666666666666655
Q ss_pred HHHHHHHh
Q psy12642 88 VFCMEELF 95 (201)
Q Consensus 88 ~~~~~~al 95 (201)
+..++.++
T Consensus 215 v~~ve~AL 222 (471)
T KOG4459|consen 215 VPEVELAL 222 (471)
T ss_pred chhHHHHH
Confidence 55444443
No 491
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=43.66 E-value=40 Score=21.45 Aligned_cols=27 Identities=37% Similarity=0.442 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q psy12642 70 TWQELCDLYLSEGDYAKAVFCMEELFL 96 (201)
Q Consensus 70 ~~~~l~~~~~~~~~~~~A~~~~~~al~ 96 (201)
-+..++.+|...|.+++|++.+.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477789999999999999999988776
No 492
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.20 E-value=85 Score=19.89 Aligned_cols=38 Identities=21% Similarity=0.147 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHH
Q psy12642 68 QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLH 105 (201)
Q Consensus 68 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 105 (201)
|..+..+|.+|...|+-+.|+.-|+.--.+.|.+....
T Consensus 72 PG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~fm 109 (121)
T COG4259 72 PGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVFM 109 (121)
T ss_pred CcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhHH
Confidence 55677788888888888888888887777788765543
No 493
>KOG0292|consensus
Probab=42.56 E-value=98 Score=27.86 Aligned_cols=45 Identities=18% Similarity=0.408 Sum_probs=23.4
Q ss_pred HHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12642 45 KAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEEL 94 (201)
Q Consensus 45 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 94 (201)
.+.|+.+.|++...+ -++++.|..||..-+.+|+.+=|..+|++.
T Consensus 654 Le~gnle~ale~akk-----ldd~d~w~rLge~Al~qgn~~IaEm~yQ~~ 698 (1202)
T KOG0292|consen 654 LECGNLEVALEAAKK-----LDDKDVWERLGEEALRQGNHQIAEMCYQRT 698 (1202)
T ss_pred hhcCCHHHHHHHHHh-----cCcHHHHHHHHHHHHHhcchHHHHHHHHHh
Confidence 344555555544332 234555556665555566655555555543
No 494
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=42.44 E-value=1.3e+02 Score=21.58 Aligned_cols=61 Identities=18% Similarity=0.133 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhcCcccH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q psy12642 16 YEEALEHLETIIKIDETNT--------AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDL 77 (201)
Q Consensus 16 ~~~A~~~~~~~l~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 77 (201)
.+.|+..++.+-+..|... .+-.....+.++.|.+++|.+.+++... +|++......|..+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~I 153 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMI 153 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHH
Confidence 4567777777665544321 1122234468889999999999999988 78776665555444
No 495
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=42.40 E-value=60 Score=18.85 Aligned_cols=8 Identities=50% Similarity=0.858 Sum_probs=2.9
Q ss_pred CCHHHHHH
Q psy12642 82 GDYAKAVF 89 (201)
Q Consensus 82 ~~~~~A~~ 89 (201)
|++++|+.
T Consensus 22 g~~~eAl~ 29 (77)
T smart00745 22 GDYEEALE 29 (77)
T ss_pred CCHHHHHH
Confidence 33333333
No 496
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=41.70 E-value=1.4e+02 Score=25.71 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=16.6
Q ss_pred hHHHHHhhhhccCHHHHHHHHHH
Q psy12642 3 PIVYIIGCFHFFRYEEALEHLET 25 (201)
Q Consensus 3 ~~~~~~~~~~~~~~~~A~~~~~~ 25 (201)
|.+|...+.-.|+|+.|++++-.
T Consensus 261 p~~Yf~~LlLtgqFE~AI~~L~~ 283 (613)
T PF04097_consen 261 PLLYFQVLLLTGQFEAAIEFLYR 283 (613)
T ss_dssp ---HHHHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHh
Confidence 56788888889999999998877
No 497
>KOG4563|consensus
Probab=41.32 E-value=71 Score=25.35 Aligned_cols=45 Identities=18% Similarity=0.031 Sum_probs=25.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCC--------CCHHHHHHHHHHHHHcC
Q psy12642 72 QELCDLYLSEGDYAKAVFCMEELFLHHP--------HNHLLHQRYADILYTQG 116 (201)
Q Consensus 72 ~~l~~~~~~~~~~~~A~~~~~~al~~~~--------~~~~~~~~la~~~~~~~ 116 (201)
...|+-.+.++++++|...|..+..+.. .+...++.+|..++..+
T Consensus 45 v~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela 97 (400)
T KOG4563|consen 45 VQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELA 97 (400)
T ss_pred HHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666654422 22345666666666655
No 498
>KOG1463|consensus
Probab=41.06 E-value=1.8e+02 Score=23.07 Aligned_cols=118 Identities=14% Similarity=0.066 Sum_probs=76.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh----cCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC-----CCCHHH--
Q psy12642 38 KRKICILKAKNKIPEAIKELTEYLKK----FMT--DQETWQELCDLYLSEGDYAKAVFCMEELFLHH-----PHNHLL-- 104 (201)
Q Consensus 38 ~~~a~~~~~~~~~~~A~~~~~~~~~~----~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~-- 104 (201)
..+..+|...++|.+|+......++. +.. -.+++..-...|+...+..+|...+..+-... |....+
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l 211 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL 211 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence 35677899999999999988777652 211 14566666788899999999988887765432 221111
Q ss_pred HHHHHHHHHHcCCcccHHHHHHHHHHHHcCCc------ccHHHHHHHHHHHHHhhhhhhh
Q psy12642 105 HQRYADILYTQGGLENIELAISHYLMAINLNE------KNIRALYGLALSCHQVLTSAKC 158 (201)
Q Consensus 105 ~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~~~~~~a 158 (201)
-..-|..+.... +|..|..+|-.+++-.. +-..++.++..|-...+..++-
T Consensus 212 DLqSGIlha~ek---DykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv 268 (411)
T KOG1463|consen 212 DLQSGILHAAEK---DYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDV 268 (411)
T ss_pred HHhccceeeccc---ccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHH
Confidence 122244444445 99999999999987543 2223455666666666554443
No 499
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=39.32 E-value=1.7e+02 Score=22.32 Aligned_cols=91 Identities=15% Similarity=-0.002 Sum_probs=55.5
Q ss_pred hhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHH----------HHHcCCHHHHHHHHHHHHHhcCCC------HHHHH
Q psy12642 9 GCFHFFRYEEALEHLETIIKIDETNTAARKRKICI----------LKAKNKIPEAIKELTEYLKKFMTD------QETWQ 72 (201)
Q Consensus 9 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~----------~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~ 72 (201)
.+.+-++.-.|+..+...+.-.|.+..+...-+.+ ....-....|.+++..++-..... .-+.+
T Consensus 4 ~L~D~~e~L~~L~~~~~~~~~~~~NL~~l~~~a~~lEk~~~~Fs~~~s~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~ 83 (368)
T COG5091 4 ALYDEKEPLKALHLYDEILKGSPTNLTALIFKAACLEKLYFGFSDWHSDATMENAKELLDKALMTAEGRGDRSKIGLVNF 83 (368)
T ss_pred chhcccchHHHhhhhhhhhccCCcceeEEeehhhhHHHHHhhhhhhhcccChhhHHHHHHHHHHhhhccCCcceeeeehh
Confidence 34555666677777777777777765332222221 112234567777777777643322 23455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCC
Q psy12642 73 ELCDLYLSEGDYAKAVFCMEELFLHHP 99 (201)
Q Consensus 73 ~l~~~~~~~~~~~~A~~~~~~al~~~~ 99 (201)
..+..|+...+|+-|..+|..+..+..
T Consensus 84 ~~~v~~~~ik~Ye~a~~~F~~A~~~~~ 110 (368)
T COG5091 84 RYFVHFFNIKDYELAQSYFKKAKNLYV 110 (368)
T ss_pred hhHHHhhhHHHHHHHHHHHHHHHHHhh
Confidence 567777788888888888888877644
No 500
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=38.78 E-value=2.5e+02 Score=23.97 Aligned_cols=80 Identities=13% Similarity=0.112 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-----CCCCHHHH
Q psy12642 34 TAARKRKICILKAKN---KIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLH-----HPHNHLLH 105 (201)
Q Consensus 34 ~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~ 105 (201)
......+-+++...| .|.-|+-.+-.+-+..|. ..-+.++..|+++|.. +..+...+
T Consensus 257 ~~lqq~lLw~lyd~ghl~~YPmALg~LadLeEi~pt---------------~~r~~~~~l~~~AI~sa~~~Y~n~HvYPY 321 (618)
T PF05053_consen 257 AQLQQDLLWLLYDMGHLARYPMALGNLADLEEIDPT---------------PGRPTPLELFNEAISSARTYYNNHHVYPY 321 (618)
T ss_dssp HHHHHHHHHHHHHTTTTTT-HHHHHHHHHHHHHS-----------------TTS--HHHHHHHHHHHHHHHCTT--SHHH
T ss_pred HHHHHHHHHHHHhcCchhhCchhhhhhHhHHhhccC---------------CCCCCHHHHHHHHHHHHHHHhcCCccccc
Q ss_pred HHHHHHHHHcCCcccHHHHHHHHHHH
Q psy12642 106 QRYADILYTQGGLENIELAISHYLMA 131 (201)
Q Consensus 106 ~~la~~~~~~~~~~~~~~A~~~~~~a 131 (201)
..+|..+++.+ ++.+|+..+-.+
T Consensus 322 ty~gg~~yR~~---~~~eA~~~Wa~a 344 (618)
T PF05053_consen 322 TYLGGYYYRHK---RYREALRSWAEA 344 (618)
T ss_dssp HHHHHHHHHTT----HHHHHHHHHHH
T ss_pred eehhhHHHHHH---HHHHHHHHHHHH
Done!