Query psy12642
Match_columns 201
No_of_seqs 295 out of 3354
Neff 10.7
Searched_HMMs 29240
Date Fri Aug 16 15:51:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12642.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12642hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vtx_A MAMA; tetratricopeptide 99.9 2.5E-25 8.5E-30 155.4 22.2 159 5-166 10-168 (184)
2 2pl2_A Hypothetical conserved 99.9 3.3E-25 1.1E-29 159.2 21.7 184 4-191 9-205 (217)
3 4gyw_A UDP-N-acetylglucosamine 99.9 1.4E-24 4.6E-29 179.9 22.3 160 4-166 13-172 (723)
4 2pl2_A Hypothetical conserved 99.9 6.9E-25 2.4E-29 157.5 17.2 155 4-162 43-208 (217)
5 4ga2_A E3 SUMO-protein ligase 99.9 1E-25 3.5E-30 152.9 12.1 145 7-154 4-149 (150)
6 4i17_A Hypothetical protein; T 99.9 5.9E-23 2E-27 148.0 24.7 149 4-155 11-169 (228)
7 2q7f_A YRRB protein; TPR, prot 99.9 1.5E-22 5.2E-27 146.4 20.6 193 4-199 27-221 (243)
8 2h6f_A Protein farnesyltransfe 99.9 1.4E-23 4.9E-28 162.5 15.8 151 5-158 102-254 (382)
9 4gco_A Protein STI-1; structur 99.9 4.4E-23 1.5E-27 135.9 15.9 121 26-149 5-125 (126)
10 4eqf_A PEX5-related protein; a 99.9 3.6E-22 1.2E-26 153.1 23.4 194 3-199 68-309 (365)
11 1w3b_A UDP-N-acetylglucosamine 99.9 5.5E-22 1.9E-26 153.3 23.2 151 7-160 142-292 (388)
12 3hym_B Cell division cycle pro 99.9 5.9E-22 2E-26 149.2 22.3 191 5-198 61-263 (330)
13 1w3b_A UDP-N-acetylglucosamine 99.9 1.3E-21 4.4E-26 151.3 24.6 192 6-200 175-368 (388)
14 2h6f_A Protein farnesyltransfe 99.9 9.9E-23 3.4E-27 157.8 17.7 178 4-184 135-322 (382)
15 4eqf_A PEX5-related protein; a 99.9 8.2E-22 2.8E-26 151.1 22.6 184 4-190 103-346 (365)
16 3u4t_A TPR repeat-containing p 99.9 1.1E-21 3.6E-26 144.4 21.9 191 5-199 42-249 (272)
17 4abn_A Tetratricopeptide repea 99.9 1.5E-22 5.2E-27 161.0 18.5 159 4-166 106-285 (474)
18 2vq2_A PILW, putative fimbrial 99.9 4E-21 1.4E-25 137.1 24.2 160 4-166 12-174 (225)
19 3urz_A Uncharacterized protein 99.9 4.9E-22 1.7E-26 141.7 19.0 161 4-166 8-184 (208)
20 3as5_A MAMA; tetratricopeptide 99.9 6.9E-22 2.4E-26 136.9 19.3 157 5-164 13-169 (186)
21 3qky_A Outer membrane assembly 99.9 7.1E-22 2.4E-26 145.2 20.4 160 4-166 19-222 (261)
22 2ho1_A Type 4 fimbrial biogene 99.9 1.6E-21 5.3E-26 142.1 21.5 187 4-193 41-231 (252)
23 3uq3_A Heat shock protein STI1 99.9 8.3E-22 2.9E-26 143.5 19.8 155 6-164 11-198 (258)
24 2q7f_A YRRB protein; TPR, prot 99.9 1.7E-21 5.7E-26 140.9 20.7 160 4-166 61-220 (243)
25 3hym_B Cell division cycle pro 99.9 2.8E-21 9.7E-26 145.4 22.2 194 4-200 94-299 (330)
26 1fch_A Peroxisomal targeting s 99.9 7.7E-21 2.6E-25 145.5 24.4 90 6-95 70-159 (368)
27 1fch_A Peroxisomal targeting s 99.9 9.1E-21 3.1E-25 145.0 24.7 154 4-161 102-273 (368)
28 3uq3_A Heat shock protein STI1 99.9 9E-22 3.1E-26 143.3 18.0 160 4-166 42-234 (258)
29 3ieg_A DNAJ homolog subfamily 99.9 3.6E-21 1.2E-25 146.2 22.0 192 3-197 6-214 (359)
30 3vtx_A MAMA; tetratricopeptide 99.9 7.1E-21 2.4E-25 132.6 21.3 166 32-200 3-170 (184)
31 3u4t_A TPR repeat-containing p 99.9 1.4E-21 4.7E-26 143.8 18.3 160 2-166 5-169 (272)
32 4gyw_A UDP-N-acetylglucosamine 99.9 2.1E-21 7E-26 161.0 20.4 168 29-199 4-173 (723)
33 2y4t_A DNAJ homolog subfamily 99.9 1.7E-20 5.8E-25 147.3 24.5 192 4-198 30-238 (450)
34 3gyz_A Chaperone protein IPGC; 99.9 2.4E-22 8.4E-27 136.2 11.5 122 15-139 17-138 (151)
35 4i17_A Hypothetical protein; T 99.9 2.5E-21 8.5E-26 139.4 16.7 143 5-150 47-225 (228)
36 3ieg_A DNAJ homolog subfamily 99.9 1.5E-20 5.2E-25 142.7 21.9 159 4-165 41-214 (359)
37 2ho1_A Type 4 fimbrial biogene 99.9 1.5E-20 5E-25 136.9 20.7 158 4-164 75-234 (252)
38 2yhc_A BAMD, UPF0169 lipoprote 99.9 6.5E-21 2.2E-25 137.4 17.5 156 5-163 9-208 (225)
39 4abn_A Tetratricopeptide repea 99.9 2E-21 6.9E-26 154.6 16.2 156 3-162 140-315 (474)
40 2vgx_A Chaperone SYCD; alterna 99.9 9.8E-22 3.4E-26 132.9 12.2 132 19-153 6-137 (148)
41 2r5s_A Uncharacterized protein 99.9 4.1E-21 1.4E-25 133.3 14.3 159 4-166 10-171 (176)
42 2xpi_A Anaphase-promoting comp 99.9 1.3E-19 4.3E-24 147.1 24.5 155 6-163 345-499 (597)
43 2y4t_A DNAJ homolog subfamily 99.9 1.1E-19 3.9E-24 142.5 23.5 191 7-200 150-358 (450)
44 3cv0_A Peroxisome targeting si 99.9 2.9E-20 1E-24 139.7 19.2 192 4-198 25-267 (327)
45 2xpi_A Anaphase-promoting comp 99.9 9.1E-20 3.1E-24 147.9 23.3 193 4-199 377-578 (597)
46 2xcb_A PCRH, regulatory protei 99.9 4.5E-21 1.5E-25 128.6 12.8 131 21-154 5-135 (142)
47 2vq2_A PILW, putative fimbrial 99.9 6E-20 2.1E-24 131.0 19.3 154 4-160 46-203 (225)
48 2pzi_A Probable serine/threoni 99.9 6.2E-21 2.1E-25 157.8 15.1 150 11-164 402-559 (681)
49 4gco_A Protein STI-1; structur 99.9 2.1E-20 7.1E-25 123.0 14.7 107 6-112 19-125 (126)
50 3cv0_A Peroxisome targeting si 99.9 3.2E-20 1.1E-24 139.5 17.7 152 9-163 147-310 (327)
51 1xnf_A Lipoprotein NLPI; TPR, 99.9 1.4E-19 4.7E-24 133.1 20.4 150 9-162 14-167 (275)
52 3urz_A Uncharacterized protein 99.9 7.4E-20 2.5E-24 130.4 18.0 123 33-158 3-141 (208)
53 2pzi_A Probable serine/threoni 99.9 4.9E-21 1.7E-25 158.5 13.3 147 4-154 437-583 (681)
54 2vsy_A XCC0866; transferase, g 99.9 3E-20 1E-24 150.7 17.7 150 13-165 2-154 (568)
55 3qou_A Protein YBBN; thioredox 99.9 2.6E-20 8.9E-25 139.1 15.8 159 4-165 121-281 (287)
56 1p5q_A FKBP52, FK506-binding p 99.9 6.8E-21 2.3E-25 145.3 12.5 146 12-160 125-285 (336)
57 3mkr_A Coatomer subunit epsilo 99.8 1.7E-19 5.7E-24 135.0 19.0 142 8-157 109-252 (291)
58 1xnf_A Lipoprotein NLPI; TPR, 99.8 9.9E-20 3.4E-24 133.8 17.4 192 4-200 47-244 (275)
59 3fp2_A TPR repeat-containing p 99.8 1.5E-19 5.3E-24 144.6 19.4 153 6-162 249-401 (537)
60 3fp2_A TPR repeat-containing p 99.8 1.9E-19 6.5E-24 144.1 19.9 156 4-162 280-451 (537)
61 2gw1_A Mitochondrial precursor 99.8 5.2E-20 1.8E-24 146.4 16.5 189 5-197 242-441 (514)
62 3upv_A Heat shock protein STI1 99.8 1.7E-19 5.9E-24 118.2 15.4 118 31-151 1-124 (126)
63 2e2e_A Formate-dependent nitri 99.8 5.2E-20 1.8E-24 127.6 13.1 131 9-142 19-152 (177)
64 3qky_A Outer membrane assembly 99.8 1.6E-19 5.4E-24 132.6 16.2 153 4-159 56-252 (261)
65 2fo7_A Synthetic consensus TPR 99.8 6E-19 2E-23 115.7 17.3 132 3-137 4-135 (136)
66 4ga2_A E3 SUMO-protein ligase 99.8 1.6E-19 5.4E-24 122.3 14.1 114 3-116 34-148 (150)
67 2gw1_A Mitochondrial precursor 99.8 1.1E-19 3.7E-24 144.6 15.5 151 7-160 277-436 (514)
68 3nf1_A KLC 1, kinesin light ch 99.8 6.1E-19 2.1E-23 131.6 18.5 160 4-166 31-222 (311)
69 1ouv_A Conserved hypothetical 99.8 9.8E-18 3.4E-22 123.7 24.3 183 4-197 10-212 (273)
70 3mkr_A Coatomer subunit epsilo 99.8 5.8E-18 2E-22 126.6 23.0 153 6-166 71-227 (291)
71 1qqe_A Vesicular transport pro 99.8 6.2E-19 2.1E-23 131.8 17.5 155 8-165 45-225 (292)
72 2vyi_A SGTA protein; chaperone 99.8 8.2E-19 2.8E-23 114.6 15.7 125 28-155 6-130 (131)
73 3edt_B KLC 2, kinesin light ch 99.8 9E-19 3.1E-23 128.8 17.3 152 11-165 12-195 (283)
74 3as5_A MAMA; tetratricopeptide 99.8 1.4E-18 4.8E-23 120.1 16.9 134 4-140 46-179 (186)
75 2ond_A Cleavage stimulation fa 99.8 3.2E-18 1.1E-22 128.8 20.0 148 17-167 81-231 (308)
76 2fbn_A 70 kDa peptidylprolyl i 99.8 9.1E-20 3.1E-24 128.7 10.8 149 8-159 12-176 (198)
77 2lni_A Stress-induced-phosphop 99.8 1E-18 3.4E-23 114.8 15.1 123 29-154 11-133 (133)
78 3sz7_A HSC70 cochaperone (SGT) 99.8 7.2E-19 2.5E-23 120.5 14.6 124 29-155 6-131 (164)
79 1kt0_A FKBP51, 51 kDa FK506-bi 99.8 5.6E-20 1.9E-24 145.7 10.3 147 12-161 246-407 (457)
80 3gyz_A Chaperone protein IPGC; 99.8 5.1E-20 1.7E-24 124.8 7.0 109 55-166 23-131 (151)
81 1hh8_A P67PHOX, NCF-2, neutrop 99.8 5.2E-18 1.8E-22 120.5 17.7 136 5-146 11-162 (213)
82 3q49_B STIP1 homology and U bo 99.8 3.7E-18 1.3E-22 113.0 15.7 125 29-156 4-133 (137)
83 1ouv_A Conserved hypothetical 99.8 7E-17 2.4E-21 119.1 23.7 183 5-198 43-249 (273)
84 3ulq_A Response regulator aspa 99.8 7.6E-18 2.6E-22 130.2 19.2 157 6-165 109-290 (383)
85 3edt_B KLC 2, kinesin light ch 99.8 2.6E-18 9E-23 126.2 15.9 127 5-134 48-198 (283)
86 1na0_A Designed protein CTPR3; 99.8 1.4E-17 4.7E-22 107.8 16.9 121 30-153 4-125 (125)
87 2vsy_A XCC0866; transferase, g 99.8 4.1E-18 1.4E-22 138.2 17.0 140 4-146 27-169 (568)
88 1a17_A Serine/threonine protei 99.8 3.1E-17 1.1E-21 111.7 18.9 127 33-162 12-140 (166)
89 2ond_A Cleavage stimulation fa 99.8 1.6E-17 5.4E-22 125.0 18.9 161 3-166 102-268 (308)
90 3rkv_A Putative peptidylprolyl 99.8 7.8E-18 2.7E-22 115.1 15.2 123 33-158 10-151 (162)
91 1elw_A TPR1-domain of HOP; HOP 99.8 2.6E-17 8.9E-22 105.5 16.7 115 33-150 3-117 (118)
92 1a17_A Serine/threonine protei 99.8 2.3E-17 7.7E-22 112.4 17.2 128 4-134 17-146 (166)
93 3qou_A Protein YBBN; thioredox 99.8 1.6E-17 5.6E-22 123.9 17.5 166 30-198 113-282 (287)
94 4a1s_A PINS, partner of inscut 99.8 1E-17 3.5E-22 130.1 17.1 191 5-198 53-290 (411)
95 3nf1_A KLC 1, kinesin light ch 99.8 8.6E-18 3E-22 125.3 15.7 156 5-163 74-302 (311)
96 4gcn_A Protein STI-1; structur 99.8 7.7E-18 2.6E-22 110.8 13.5 110 32-145 6-122 (127)
97 3upv_A Heat shock protein STI1 99.8 1.6E-17 5.6E-22 108.6 14.7 111 4-114 8-124 (126)
98 4g1t_A Interferon-induced prot 99.8 3.6E-17 1.2E-21 129.2 19.2 194 6-199 57-275 (472)
99 1hxi_A PEX5, peroxisome target 99.8 1.1E-17 3.6E-22 109.2 13.3 103 35-140 18-120 (121)
100 2fo7_A Synthetic consensus TPR 99.8 5.5E-17 1.9E-21 106.2 16.9 126 35-163 2-127 (136)
101 2r5s_A Uncharacterized protein 99.8 2.4E-18 8.1E-23 119.3 10.5 164 31-198 3-171 (176)
102 3sf4_A G-protein-signaling mod 99.8 2.2E-17 7.4E-22 127.5 17.0 192 4-198 13-254 (406)
103 3ro2_A PINS homolog, G-protein 99.8 3.9E-17 1.3E-21 122.5 17.2 191 4-197 9-249 (338)
104 1p5q_A FKBP52, FK506-binding p 99.8 2.5E-17 8.6E-22 125.6 16.0 127 5-134 152-294 (336)
105 2qfc_A PLCR protein; TPR, HTH, 99.8 1.6E-16 5.5E-21 118.6 20.1 156 6-164 81-262 (293)
106 4g1t_A Interferon-induced prot 99.8 1.6E-16 5.4E-21 125.5 21.0 143 11-156 149-298 (472)
107 1qqe_A Vesicular transport pro 99.8 3E-17 1E-21 122.7 15.7 152 6-160 83-261 (292)
108 2yhc_A BAMD, UPF0169 lipoprote 99.8 1.4E-16 4.7E-21 114.6 18.2 159 33-194 3-207 (225)
109 4a1s_A PINS, partner of inscut 99.8 1.2E-17 4.1E-22 129.6 13.6 190 5-197 91-329 (411)
110 2xcb_A PCRH, regulatory protei 99.8 1.9E-17 6.4E-22 110.8 12.6 111 4-114 22-132 (142)
111 2vyi_A SGTA protein; chaperone 99.8 7.4E-17 2.5E-21 105.2 14.9 113 4-116 16-128 (131)
112 2vgx_A Chaperone SYCD; alterna 99.7 4E-17 1.4E-21 110.2 13.5 103 4-106 25-127 (148)
113 3q15_A PSP28, response regulat 99.7 3E-16 1E-20 121.1 20.1 156 6-164 107-286 (378)
114 3dra_A Protein farnesyltransfe 99.7 6.8E-16 2.3E-20 115.7 21.3 185 9-196 76-283 (306)
115 2dba_A Smooth muscle cell asso 99.7 5.4E-17 1.8E-21 108.4 14.0 120 29-151 23-145 (148)
116 3sf4_A G-protein-signaling mod 99.7 2.3E-17 7.9E-22 127.3 13.7 189 6-197 93-333 (406)
117 3sz7_A HSC70 cochaperone (SGT) 99.7 4.2E-17 1.4E-21 111.6 13.6 110 4-113 15-124 (164)
118 1elr_A TPR2A-domain of HOP; HO 99.7 7.2E-17 2.4E-21 105.3 14.1 120 32-155 2-128 (131)
119 2lni_A Stress-induced-phosphop 99.7 5.8E-17 2E-21 106.3 13.5 113 4-116 20-132 (133)
120 2hr2_A Hypothetical protein; a 99.7 1.5E-17 5.2E-22 112.2 10.6 114 34-150 11-147 (159)
121 2c2l_A CHIP, carboxy terminus 99.7 3.2E-17 1.1E-21 121.9 12.9 98 4-101 8-105 (281)
122 1hxi_A PEX5, peroxisome target 99.7 4.4E-17 1.5E-21 106.2 12.0 100 4-103 21-120 (121)
123 3rjv_A Putative SEL1 repeat pr 99.7 4.3E-16 1.5E-20 111.2 18.1 153 5-166 23-195 (212)
124 3ro2_A PINS homolog, G-protein 99.7 4.1E-17 1.4E-21 122.4 13.1 190 7-199 90-331 (338)
125 2xev_A YBGF; tetratricopeptide 99.7 1.7E-16 5.8E-21 103.9 14.2 112 36-150 4-121 (129)
126 1elw_A TPR1-domain of HOP; HOP 99.7 4.7E-16 1.6E-20 99.6 15.5 109 4-112 8-116 (118)
127 3u3w_A Transcriptional activat 99.7 1.6E-16 5.6E-21 118.6 15.0 156 7-165 82-263 (293)
128 2kck_A TPR repeat; tetratricop 99.7 5.5E-17 1.9E-21 103.1 10.7 106 30-138 2-110 (112)
129 2fbn_A 70 kDa peptidylprolyl i 99.7 1.9E-16 6.6E-21 111.6 14.4 124 5-131 43-183 (198)
130 1na0_A Designed protein CTPR3; 99.7 7.4E-16 2.5E-20 99.5 16.1 112 5-116 14-125 (125)
131 1hh8_A P67PHOX, NCF-2, neutrop 99.7 3.1E-16 1.1E-20 111.3 15.4 127 34-166 6-148 (213)
132 3rkv_A Putative peptidylprolyl 99.7 1.3E-16 4.6E-21 108.8 12.3 112 5-116 16-146 (162)
133 4gcn_A Protein STI-1; structur 99.7 3.1E-16 1.1E-20 103.0 13.5 103 6-109 14-123 (127)
134 1wao_1 Serine/threonine protei 99.7 2.8E-17 9.6E-22 130.8 9.6 129 7-138 13-154 (477)
135 2xev_A YBGF; tetratricopeptide 99.7 1.2E-15 4.2E-20 99.7 15.9 114 3-116 5-124 (129)
136 2if4_A ATFKBP42; FKBP-like, al 99.7 7.6E-17 2.6E-21 123.0 10.5 131 6-139 185-333 (338)
137 2e2e_A Formate-dependent nitri 99.7 1.5E-16 5.2E-21 110.0 11.1 119 44-165 20-141 (177)
138 1ihg_A Cyclophilin 40; ppiase 99.7 4.9E-16 1.7E-20 119.9 15.0 124 34-160 223-362 (370)
139 3q49_B STIP1 homology and U bo 99.7 5.3E-16 1.8E-20 102.5 13.1 112 4-115 13-129 (137)
140 3dra_A Protein farnesyltransfe 99.7 2.7E-15 9.1E-20 112.5 18.0 146 6-154 38-195 (306)
141 2ooe_A Cleavage stimulation fa 99.7 1.1E-15 3.8E-20 122.9 17.2 151 13-166 292-452 (530)
142 2hr2_A Hypothetical protein; a 99.7 1.8E-16 6.3E-21 106.9 10.4 102 5-106 16-140 (159)
143 3k9i_A BH0479 protein; putativ 99.7 1.1E-16 3.9E-21 103.4 9.1 100 13-112 3-105 (117)
144 3ulq_A Response regulator aspa 99.7 6E-16 2.1E-20 119.5 14.5 193 5-200 148-368 (383)
145 2ifu_A Gamma-SNAP; membrane fu 99.7 5.6E-16 1.9E-20 116.6 13.6 154 8-165 44-221 (307)
146 2dba_A Smooth muscle cell asso 99.7 2.4E-15 8.3E-20 100.3 15.1 111 4-114 32-145 (148)
147 1wao_1 Serine/threonine protei 99.7 8E-17 2.7E-21 128.2 8.0 128 33-163 5-134 (477)
148 3rjv_A Putative SEL1 repeat pr 99.7 5.6E-15 1.9E-19 105.4 16.8 159 17-185 3-176 (212)
149 1kt0_A FKBP51, 51 kDa FK506-bi 99.7 1.5E-15 5E-20 120.3 15.1 125 5-132 273-413 (457)
150 3k9i_A BH0479 protein; putativ 99.7 1.3E-16 4.5E-21 103.2 7.5 103 46-151 2-107 (117)
151 3gw4_A Uncharacterized protein 99.7 1.8E-15 6.3E-20 106.2 13.6 153 10-165 2-173 (203)
152 1dce_A Protein (RAB geranylger 99.7 2E-15 6.7E-20 122.4 15.4 142 16-157 89-244 (567)
153 2c2l_A CHIP, carboxy terminus 99.7 8.2E-16 2.8E-20 114.3 11.9 105 31-138 1-105 (281)
154 2ooe_A Cleavage stimulation fa 99.7 7.5E-15 2.6E-19 118.1 18.0 162 3-167 324-491 (530)
155 1zu2_A Mitochondrial import re 99.7 6.5E-16 2.2E-20 104.0 9.8 93 10-102 12-125 (158)
156 1zu2_A Mitochondrial import re 99.7 5.8E-16 2E-20 104.2 9.1 101 46-146 14-132 (158)
157 3dss_A Geranylgeranyl transfer 99.7 2.3E-14 7.9E-19 108.2 18.7 144 7-153 36-193 (331)
158 2if4_A ATFKBP42; FKBP-like, al 99.6 7E-18 2.4E-22 128.7 -0.7 123 28-153 173-312 (338)
159 1ihg_A Cyclophilin 40; ppiase 99.6 5.2E-15 1.8E-19 114.2 14.6 119 5-126 228-362 (370)
160 1elr_A TPR2A-domain of HOP; HO 99.6 6.7E-15 2.3E-19 95.8 12.5 112 4-116 8-126 (131)
161 1dce_A Protein (RAB geranylger 99.6 2.9E-14 9.8E-19 115.6 18.7 145 9-155 37-194 (567)
162 2kck_A TPR repeat; tetratricop 99.6 7.4E-15 2.5E-19 93.1 12.1 100 3-102 9-111 (112)
163 3dss_A Geranylgeranyl transfer 99.6 2.4E-13 8.2E-18 102.7 21.8 137 16-152 90-240 (331)
164 3q15_A PSP28, response regulat 99.6 1.9E-14 6.4E-19 111.0 15.8 158 6-164 188-361 (378)
165 2xm6_A Protein corresponding t 99.6 5.7E-13 1.9E-17 106.2 24.3 160 13-183 56-231 (490)
166 2ifu_A Gamma-SNAP; membrane fu 99.6 1.8E-14 6.3E-19 108.2 14.6 151 12-166 3-182 (307)
167 3q7a_A Farnesyltransferase alp 99.6 5.3E-14 1.8E-18 106.8 16.4 139 13-154 67-216 (349)
168 4f3v_A ESX-1 secretion system 99.6 8.3E-15 2.8E-19 108.0 11.7 139 3-146 105-248 (282)
169 2xm6_A Protein corresponding t 99.6 5.4E-13 1.8E-17 106.3 23.0 163 13-183 236-411 (490)
170 3q7a_A Farnesyltransferase alp 99.6 4.5E-14 1.6E-18 107.1 15.2 147 9-155 97-258 (349)
171 1hz4_A MALT regulatory protein 99.6 4.7E-13 1.6E-17 102.7 19.9 158 5-165 19-200 (373)
172 2qfc_A PLCR protein; TPR, HTH, 99.6 1.2E-12 4.3E-17 97.5 21.5 166 30-198 71-264 (293)
173 3ro3_A PINS homolog, G-protein 99.6 2.9E-14 9.9E-19 96.0 11.3 123 35-160 10-150 (164)
174 4f3v_A ESX-1 secretion system 99.6 1.1E-13 3.8E-18 102.0 14.9 153 6-163 13-232 (282)
175 3e4b_A ALGK; tetratricopeptide 99.6 1.7E-13 5.7E-18 108.4 16.8 170 6-183 182-366 (452)
176 2kat_A Uncharacterized protein 99.6 9.2E-14 3.1E-18 89.2 12.7 100 52-154 3-104 (115)
177 2l6j_A TPR repeat-containing p 99.5 8.9E-14 3E-18 88.3 11.3 91 67-160 3-99 (111)
178 2kat_A Uncharacterized protein 99.5 8E-14 2.7E-18 89.5 11.0 98 18-115 3-102 (115)
179 3gw4_A Uncharacterized protein 99.5 6.7E-14 2.3E-18 98.2 10.7 145 5-153 31-194 (203)
180 1na3_A Designed protein CTPR2; 99.5 1.3E-13 4.4E-18 84.4 10.5 81 33-113 8-88 (91)
181 1na3_A Designed protein CTPR2; 99.5 3.7E-13 1.3E-17 82.3 12.3 85 66-153 7-91 (91)
182 2l6j_A TPR repeat-containing p 99.5 1.5E-14 5E-19 92.0 5.5 94 33-129 3-102 (111)
183 3ro3_A PINS homolog, G-protein 99.5 2.7E-13 9.1E-18 91.2 12.0 131 4-137 13-161 (164)
184 1hz4_A MALT regulatory protein 99.5 6.5E-12 2.2E-16 96.3 21.2 157 6-165 99-279 (373)
185 3u3w_A Transcriptional activat 99.5 2.3E-12 7.9E-17 96.0 17.6 161 37-200 78-266 (293)
186 3mv2_B Coatomer subunit epsilo 99.5 1.9E-12 6.5E-17 96.6 16.5 145 4-154 104-270 (310)
187 3e4b_A ALGK; tetratricopeptide 99.5 4.8E-12 1.6E-16 100.0 19.0 165 7-184 148-331 (452)
188 3ma5_A Tetratricopeptide repea 99.5 8.2E-13 2.8E-17 82.8 10.5 88 64-154 3-92 (100)
189 1klx_A Cysteine rich protein B 99.4 6.8E-12 2.3E-16 83.3 14.4 121 13-146 8-136 (138)
190 2kc7_A BFR218_protein; tetratr 99.4 3.2E-13 1.1E-17 84.2 6.9 90 38-138 4-94 (99)
191 3ma5_A Tetratricopeptide repea 99.4 2.2E-12 7.4E-17 80.9 10.1 86 29-114 2-89 (100)
192 2kc7_A BFR218_protein; tetratr 99.4 1.2E-12 4E-17 81.6 7.4 94 1-102 1-95 (99)
193 1xi4_A Clathrin heavy chain; a 99.4 2.5E-10 8.4E-15 99.0 21.7 130 12-162 1088-1244(1630)
194 4b4t_Q 26S proteasome regulato 99.3 6.4E-11 2.2E-15 92.4 16.5 155 6-163 10-199 (434)
195 1b89_A Protein (clathrin heavy 99.3 2.6E-12 9E-17 99.9 7.9 165 11-200 72-236 (449)
196 3mv2_B Coatomer subunit epsilo 99.3 1.4E-10 4.7E-15 86.6 14.2 141 19-163 85-235 (310)
197 3ly7_A Transcriptional activat 99.3 1.8E-10 6.1E-15 87.6 14.7 123 13-139 212-344 (372)
198 1b89_A Protein (clathrin heavy 99.3 5.1E-11 1.7E-15 92.8 11.4 173 6-198 128-309 (449)
199 3n71_A Histone lysine methyltr 99.2 2E-10 6.8E-15 91.4 11.8 120 10-132 319-462 (490)
200 1xi4_A Clathrin heavy chain; a 99.2 1.4E-09 4.9E-14 94.4 17.6 175 3-200 1108-1309(1630)
201 1pc2_A Mitochondria fission pr 99.2 3.4E-10 1.2E-14 75.4 10.6 95 15-109 13-112 (152)
202 4e6h_A MRNA 3'-END-processing 99.2 2E-09 6.9E-14 88.8 17.2 162 4-168 382-570 (679)
203 3bee_A Putative YFRE protein; 99.2 5.6E-10 1.9E-14 68.8 10.5 71 64-137 2-75 (93)
204 1klx_A Cysteine rich protein B 99.2 1.2E-09 4E-14 72.4 12.7 108 48-166 9-124 (138)
205 4e6h_A MRNA 3'-END-processing 99.2 2.8E-09 9.4E-14 88.0 17.5 160 3-164 346-529 (679)
206 3bee_A Putative YFRE protein; 99.2 4.3E-10 1.5E-14 69.3 9.6 74 30-103 2-78 (93)
207 1pc2_A Mitochondria fission pr 99.1 1.1E-09 3.9E-14 72.9 11.2 100 50-152 14-118 (152)
208 4b4t_Q 26S proteasome regulato 99.1 5.4E-10 1.9E-14 87.1 10.4 153 6-161 61-238 (434)
209 2v5f_A Prolyl 4-hydroxylase su 99.1 3E-09 1E-13 66.9 10.8 76 68-146 5-87 (104)
210 3u64_A Protein TP_0956; tetrat 99.0 4.3E-09 1.5E-13 77.2 12.3 107 29-138 147-273 (301)
211 3n71_A Histone lysine methyltr 99.0 3.8E-09 1.3E-13 84.1 12.5 120 40-162 315-458 (490)
212 2v5f_A Prolyl 4-hydroxylase su 99.0 1.2E-08 4E-13 64.2 11.1 76 34-109 5-87 (104)
213 3qww_A SET and MYND domain-con 98.8 4.6E-08 1.6E-12 76.7 11.8 84 13-96 311-410 (433)
214 2uy1_A Cleavage stimulation fa 98.8 6.3E-07 2.2E-11 71.6 18.1 141 16-160 195-375 (493)
215 3qwp_A SET and MYND domain-con 98.8 3.8E-08 1.3E-12 77.2 10.3 85 46-133 299-399 (429)
216 3ly7_A Transcriptional activat 98.8 5E-07 1.7E-11 68.8 15.7 137 26-166 186-337 (372)
217 1nzn_A CGI-135 protein, fissio 98.8 1.2E-07 4.2E-12 60.9 10.4 94 16-109 17-115 (126)
218 3u64_A Protein TP_0956; tetrat 98.8 4.5E-08 1.5E-12 71.9 9.2 89 12-100 175-272 (301)
219 3qwp_A SET and MYND domain-con 98.7 2.9E-07 1E-11 72.2 12.7 98 7-104 294-412 (429)
220 4g26_A Pentatricopeptide repea 98.7 1E-05 3.5E-10 64.7 21.0 153 6-162 32-198 (501)
221 3qww_A SET and MYND domain-con 98.6 7.1E-08 2.4E-12 75.7 7.7 93 46-141 310-423 (433)
222 1nzn_A CGI-135 protein, fissio 98.6 1E-06 3.6E-11 56.6 11.5 100 49-151 16-120 (126)
223 2uy1_A Cleavage stimulation fa 98.6 5.3E-06 1.8E-10 66.3 17.7 153 3-164 216-409 (493)
224 3ffl_A Anaphase-promoting comp 98.5 3.6E-06 1.2E-10 56.5 11.0 132 2-149 22-165 (167)
225 4h7y_A Dual specificity protei 98.4 1.3E-05 4.5E-10 52.8 12.1 120 29-153 8-141 (161)
226 3o48_A Mitochondria fission 1 98.3 2.5E-05 8.5E-10 50.4 11.5 79 33-111 39-121 (134)
227 1y8m_A FIS1; mitochondria, unk 98.2 9.5E-05 3.2E-09 48.3 13.5 80 31-110 36-119 (144)
228 3ffl_A Anaphase-promoting comp 98.2 1.8E-05 6.2E-10 53.1 10.4 114 35-163 21-146 (167)
229 4h7y_A Dual specificity protei 98.2 3.2E-05 1.1E-09 50.9 10.0 103 2-105 15-131 (161)
230 4g26_A Pentatricopeptide repea 98.1 0.00023 7.8E-09 56.9 16.0 134 13-150 83-221 (501)
231 3o48_A Mitochondria fission 1 98.0 0.00019 6.5E-09 46.3 11.6 85 66-153 38-126 (134)
232 1y8m_A FIS1; mitochondria, unk 98.0 0.00071 2.4E-08 44.2 13.9 84 65-151 36-123 (144)
233 4gns_B Protein CSD3, chitin bi 97.6 0.0012 4.2E-08 55.1 12.8 115 13-131 261-397 (754)
234 3kae_A CDC27, possible protein 97.5 0.01 3.4E-07 40.1 13.5 126 4-140 6-149 (242)
235 4gns_B Protein CSD3, chitin bi 97.4 0.00082 2.8E-08 56.1 9.4 111 46-160 260-392 (754)
236 1ya0_A SMG-7 transcript varian 97.0 0.0081 2.8E-07 47.9 11.1 81 70-153 154-234 (497)
237 1ya0_A SMG-7 transcript varian 97.0 0.0099 3.4E-07 47.4 11.2 79 35-113 153-231 (497)
238 4b4t_S RPN3, 26S proteasome re 97.0 0.0039 1.3E-07 49.6 8.7 148 5-157 141-329 (523)
239 1zbp_A Hypothetical protein VP 96.9 0.068 2.3E-06 38.8 13.9 120 8-137 5-132 (273)
240 2ff4_A Probable regulatory pro 96.9 0.02 6.8E-07 44.2 11.9 61 70-133 173-233 (388)
241 3mkq_A Coatomer beta'-subunit; 96.9 0.059 2E-06 45.1 15.6 102 43-160 661-770 (814)
242 2ff4_A Probable regulatory pro 96.8 0.043 1.5E-06 42.3 13.2 61 104-167 173-233 (388)
243 3mkq_B Coatomer subunit alpha; 96.8 0.06 2E-06 36.6 12.4 42 13-59 18-59 (177)
244 3spa_A Mtrpol, DNA-directed RN 96.6 0.053 1.8E-06 46.9 12.9 94 4-97 131-230 (1134)
245 3kae_A CDC27, possible protein 96.6 0.089 3E-06 35.6 15.1 94 4-102 37-148 (242)
246 4b4t_P 26S proteasome regulato 96.4 0.23 7.8E-06 39.0 15.0 97 35-134 138-247 (445)
247 3txn_A 26S proteasome regulato 96.3 0.25 8.7E-06 38.1 16.6 113 39-154 104-235 (394)
248 4b4t_R RPN7, 26S proteasome re 96.3 0.041 1.4E-06 43.1 10.3 99 34-135 131-238 (429)
249 3txn_A 26S proteasome regulato 96.3 0.28 9.4E-06 37.9 15.7 110 7-116 106-234 (394)
250 1zbp_A Hypothetical protein VP 96.2 0.042 1.4E-06 39.9 8.8 62 43-104 6-67 (273)
251 3spa_A Mtrpol, DNA-directed RN 96.1 0.19 6.5E-06 43.6 13.9 97 35-134 128-230 (1134)
252 3mkq_A Coatomer beta'-subunit; 96.1 0.26 8.8E-06 41.2 15.0 76 12-92 664-747 (814)
253 4b4t_R RPN7, 26S proteasome re 95.4 0.18 6.1E-06 39.4 10.3 96 4-99 135-239 (429)
254 1qsa_A Protein (soluble lytic 95.0 0.76 2.6E-05 37.7 13.1 124 6-133 220-347 (618)
255 4fhn_B Nucleoporin NUP120; pro 94.6 1.1 3.7E-05 39.6 14.1 115 9-130 821-963 (1139)
256 4fhn_B Nucleoporin NUP120; pro 94.6 1 3.5E-05 39.8 13.9 114 40-160 818-959 (1139)
257 4b4t_P 26S proteasome regulato 94.4 0.94 3.2E-05 35.5 12.0 92 6-97 143-247 (445)
258 4b4t_S RPN3, 26S proteasome re 93.3 0.37 1.3E-05 38.5 7.9 66 34-101 231-303 (523)
259 3mkq_B Coatomer subunit alpha; 92.7 1.6 5.4E-05 29.6 16.3 48 42-94 13-60 (177)
260 3esl_A Checkpoint serine/threo 90.9 2.4 8.2E-05 29.3 8.7 69 31-100 77-147 (202)
261 1wy6_A Hypothetical protein ST 89.3 2.8 9.6E-05 27.3 7.4 120 9-135 16-155 (172)
262 1qsa_A Protein (soluble lytic 89.0 8.5 0.00029 31.6 15.5 142 9-158 261-432 (618)
263 3ax2_A Mitochondrial import re 87.6 2.6 8.8E-05 24.0 6.0 32 74-105 23-54 (73)
264 4gq2_M Nucleoporin NUP120; bet 86.7 15 0.00051 31.9 14.5 89 40-135 816-927 (950)
265 2ijq_A Hypothetical protein; s 84.8 6.7 0.00023 26.1 8.1 58 5-62 37-103 (161)
266 4a1g_A Mitotic checkpoint seri 82.6 5.2 0.00018 26.3 6.3 31 102-135 101-131 (152)
267 4ady_A RPN2, 26S proteasome re 82.2 24 0.00084 30.6 14.5 148 5-158 379-543 (963)
268 3t5x_A PCI domain-containing p 81.7 4.7 0.00016 27.9 6.2 92 34-133 14-110 (203)
269 4gq2_M Nucleoporin NUP120; bet 80.6 28 0.00095 30.2 15.4 95 6-104 816-934 (950)
270 2wvi_A Mitotic checkpoint seri 79.9 11 0.00038 25.1 8.8 31 68-98 96-126 (164)
271 3t5v_B Nuclear mRNA export pro 79.6 7.7 0.00026 30.6 7.4 89 13-101 139-254 (455)
272 4aez_C MAD3, mitotic spindle c 79.1 4.7 0.00016 28.4 5.4 35 66-100 148-182 (223)
273 3t5x_A PCI domain-containing p 78.9 8.1 0.00028 26.7 6.7 31 70-100 16-46 (203)
274 3t5v_B Nuclear mRNA export pro 77.3 5.9 0.0002 31.2 6.1 81 73-156 181-282 (455)
275 1om2_A Protein (mitochondrial 77.2 4.4 0.00015 24.3 4.2 28 74-101 26-53 (95)
276 3ax2_A Mitochondrial import re 74.5 9.5 0.00032 21.6 5.8 32 105-139 20-51 (73)
277 2npu_A FKBP12-rapamycin comple 73.0 15 0.00051 23.3 6.1 74 74-153 46-124 (126)
278 2crb_A Nuclear receptor bindin 72.8 8.8 0.0003 22.8 4.6 24 71-94 18-41 (97)
279 2cwy_A Hypothetical protein TT 71.3 14 0.00047 22.0 6.5 57 4-62 5-67 (94)
280 2wpv_A GET4, UPF0363 protein Y 70.0 31 0.0011 25.6 13.2 64 66-132 132-215 (312)
281 2ijq_A Hypothetical protein; s 69.1 22 0.00076 23.6 8.5 59 72-133 36-103 (161)
282 1wy6_A Hypothetical protein ST 67.3 23 0.0008 23.1 9.9 41 120-160 106-146 (172)
283 2cfu_A SDSA1; SDS-hydrolase, l 65.2 16 0.00056 30.2 6.4 52 104-158 451-502 (658)
284 1om2_A Protein (mitochondrial 63.6 13 0.00046 22.2 4.2 29 106-137 24-52 (95)
285 3bu8_A Telomeric repeat-bindin 62.4 18 0.00063 25.3 5.2 35 43-77 123-157 (235)
286 2rpa_A Katanin P60 ATPase-cont 62.3 8.5 0.00029 22.1 3.1 24 73-96 17-40 (78)
287 4ady_A RPN2, 26S proteasome re 61.6 83 0.0028 27.5 12.4 77 17-93 471-549 (963)
288 4b4t_O 26S proteasome regulato 59.9 56 0.0019 25.0 10.6 87 10-96 86-197 (393)
289 2crb_A Nuclear receptor bindin 59.0 23 0.00078 21.1 4.5 28 34-61 15-42 (97)
290 3myv_A SUSD superfamily protei 59.0 39 0.0013 26.4 7.4 46 51-96 165-218 (454)
291 3bu8_A Telomeric repeat-bindin 57.6 46 0.0016 23.3 8.0 67 50-116 88-162 (235)
292 2cfu_A SDSA1; SDS-hydrolase, l 57.4 28 0.00095 28.8 6.5 46 71-116 452-497 (658)
293 2w2u_A Hypothetical P60 katani 56.8 14 0.00049 21.4 3.5 32 16-62 16-47 (83)
294 3kez_A Putative sugar binding 56.0 43 0.0015 26.2 7.2 46 51-96 171-224 (461)
295 2v6y_A AAA family ATPase, P60 54.4 17 0.00057 21.1 3.5 15 16-30 8-22 (83)
296 3lew_A SUSD-like carbohydrate 54.3 51 0.0017 26.1 7.4 30 68-97 203-232 (495)
297 3mcx_A SUSD superfamily protei 51.0 48 0.0017 26.0 6.8 46 52-97 178-231 (477)
298 1wfd_A Hypothetical protein 15 50.7 35 0.0012 20.1 4.6 10 86-95 14-23 (93)
299 3re2_A Predicted protein; meni 50.5 83 0.0029 24.1 7.7 100 53-160 276-396 (472)
300 2dl1_A Spartin; SPG20, MIT, st 49.5 28 0.00097 21.6 4.1 16 84-99 19-34 (116)
301 4a5x_A MITD1, MIT domain-conta 48.9 23 0.00078 20.7 3.5 32 16-62 13-44 (86)
302 3re2_A Predicted protein; meni 47.6 91 0.0031 23.9 7.2 95 38-150 239-347 (472)
303 3bqo_A Telomeric repeat-bindin 47.2 18 0.00062 25.0 3.2 37 41-77 124-160 (211)
304 3lpz_A GET4 (YOR164C homolog); 47.2 89 0.003 23.5 15.7 26 32-57 134-159 (336)
305 3bqo_A Telomeric repeat-bindin 45.0 15 0.00052 25.3 2.5 42 75-116 124-165 (211)
306 3myv_A SUSD superfamily protei 45.0 59 0.002 25.3 6.4 32 32-63 188-219 (454)
307 2wpv_A GET4, UPF0363 protein Y 44.8 93 0.0032 23.1 19.2 117 10-129 23-158 (312)
308 2qx5_A Nucleoporin NIC96; mRNA 43.4 1.4E+02 0.0049 24.8 8.5 88 7-94 450-564 (661)
309 3mcx_A SUSD superfamily protei 43.1 78 0.0027 24.8 6.8 48 16-63 176-231 (477)
310 3lew_A SUSD-like carbohydrate 42.5 1E+02 0.0034 24.4 7.4 33 32-64 201-233 (495)
311 2cwy_A Hypothetical protein TT 41.4 54 0.0018 19.4 6.0 54 41-96 8-67 (94)
312 3esl_A Checkpoint serine/threo 40.6 88 0.003 21.6 14.5 79 55-137 58-147 (202)
313 3lxu_X Tripeptidyl-peptidase 2 40.3 2.2E+02 0.0075 26.1 9.5 31 15-45 1122-1152(1354)
314 3kez_A Putative sugar binding 40.0 67 0.0023 25.1 6.0 32 32-63 194-225 (461)
315 3u84_A Menin; MLL, JUND, ledgf 39.5 1.4E+02 0.0047 23.5 7.6 24 71-94 321-344 (550)
316 3jq1_A SUSD superfamily protei 39.0 81 0.0028 24.8 6.3 46 51-96 155-208 (481)
317 3fap_B FRAP, FKBP12-rapamycin 38.4 62 0.0021 19.2 5.4 54 75-134 17-73 (94)
318 3lpz_A GET4 (YOR164C homolog); 37.5 1.3E+02 0.0044 22.6 19.6 28 99-129 133-160 (336)
319 3hdx_A SUSD homolog, SUSD supe 37.3 97 0.0033 24.3 6.5 29 69-97 198-226 (478)
320 3qnk_A Putative lipoprotein; a 36.4 1.4E+02 0.0047 23.7 7.4 29 68-96 182-210 (517)
321 4gq4_A Menin; tumor suppressor 32.6 1.8E+02 0.0062 22.8 6.9 28 101-131 302-329 (489)
322 2cpt_A SKD1 protein, vacuolar 32.6 48 0.0016 20.6 3.3 14 16-29 15-28 (117)
323 2v6x_A Vacuolar protein sortin 31.7 75 0.0026 18.1 4.5 8 82-89 27-34 (85)
324 2vkj_A TM1634; membrane protei 31.3 83 0.0028 18.6 6.7 25 105-132 56-80 (106)
325 2yin_A DOCK2, dedicator of cyt 31.1 1.9E+02 0.0064 22.6 7.1 17 120-136 107-123 (436)
326 3s6n_M SurviVal motor neuron p 30.9 43 0.0015 15.8 2.1 15 120-134 17-31 (37)
327 3snx_A SUSD homolog, putative 30.4 64 0.0022 25.2 4.4 30 68-97 191-220 (460)
328 3u84_A Menin; MLL, JUND, ledgf 29.8 1.2E+02 0.0042 23.8 5.6 95 38-150 261-369 (550)
329 3efz_A 14-3-3 protein; 14-3-3, 28.5 1.5E+02 0.005 21.5 5.6 49 48-96 173-225 (268)
330 3eab_A Spastin; spastin, MIT, 27.8 43 0.0015 19.7 2.3 13 16-28 13-25 (89)
331 2yhe_A SEC-alkyl sulfatase; hy 32.9 13 0.00046 30.8 0.0 50 106-158 465-514 (668)
332 3lvg_A Clathrin heavy chain 1; 25.6 0.3 1E-05 39.0 -9.2 80 68-156 54-133 (624)
333 4gq4_A Menin; tumor suppressor 25.3 2.5E+02 0.0085 22.1 7.7 121 33-158 261-399 (489)
334 3qnk_A Putative lipoprotein; a 25.0 1.6E+02 0.0056 23.3 6.0 31 33-63 181-211 (517)
335 3i4g_A SUSD-like carbohydrate 24.6 2.1E+02 0.007 22.9 6.5 28 69-96 199-226 (528)
336 1g1e_B SIN3A; four-helix bundl 23.2 1.2E+02 0.0041 17.7 7.5 28 50-77 10-37 (89)
337 2o8p_A 14-3-3 domain containin 23.1 2E+02 0.0069 20.2 9.1 52 80-134 137-197 (227)
338 3lvg_A Clathrin heavy chain 1; 21.4 0.16 5.5E-06 40.5 -11.5 81 65-152 196-276 (624)
339 4b4t_O 26S proteasome regulato 21.2 2.8E+02 0.0094 21.1 9.9 89 41-132 83-196 (393)
340 1ixm_A SPO0B, protein (sporula 20.9 79 0.0027 21.5 2.9 23 6-28 38-60 (192)
341 2yhe_A SEC-alkyl sulfatase; hy 26.2 21 0.00071 29.7 0.0 45 72-116 465-509 (668)
342 3hdx_A SUSD homolog, SUSD supe 20.1 1.5E+02 0.005 23.2 4.8 31 33-63 196-226 (478)
No 1
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.95 E-value=2.5e-25 Score=155.36 Aligned_cols=159 Identities=14% Similarity=0.053 Sum_probs=152.6
Q ss_pred HHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Q psy12642 5 VYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDY 84 (201)
Q Consensus 5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 84 (201)
-.+..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|+++.++..+|.++...+++
T Consensus 10 ~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (184)
T 3vtx_A 10 DIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEK 89 (184)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCH
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHH
Q psy12642 85 AKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKK 164 (201)
Q Consensus 85 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 164 (201)
+.|...+.+++..+|.++.++..+|.++...| ++++|+..|+++++++|+++.++.++|.++..+|++++|....++
T Consensus 90 ~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 166 (184)
T 3vtx_A 90 QAAIDALQRAIALNTVYADAYYKLGLVYDSMG---EHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKK 166 (184)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHhC---CchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999 999999999999999999999999999999999999999776665
Q ss_pred HH
Q psy12642 165 EI 166 (201)
Q Consensus 165 ~~ 166 (201)
..
T Consensus 167 al 168 (184)
T 3vtx_A 167 AL 168 (184)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 2
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.94 E-value=3.3e-25 Score=159.20 Aligned_cols=184 Identities=14% Similarity=0.072 Sum_probs=159.4
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc--
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSE-- 81 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-- 81 (201)
+..+..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...
T Consensus 9 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~ 88 (217)
T 2pl2_A 9 LRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYR 88 (217)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhh
Confidence 456677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---------CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHh
Q psy12642 82 ---------GDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQV 152 (201)
Q Consensus 82 ---------~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 152 (201)
|++++|+..|++++..+|+++.++..+|.++...| ++++|+..|+++++++ +++.++..++.++...
T Consensus 89 ~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~ 164 (217)
T 2pl2_A 89 QAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLG---ERDKAEASLKQALALE-DTPEIRSALAELYLSM 164 (217)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
T ss_pred hhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999 9999999999999999 9999999999999999
Q ss_pred hhhhhhhhhhHHHHHHHh--HHHHHHHHHHHHhhhcchHHH
Q psy12642 153 LTSAKCSAAKKKEISKQM--MWVSKHLARQYEEQQGNTETL 191 (201)
Q Consensus 153 ~~~~~a~~~~~~~~~~~~--~~~~~~l~~~y~~~~~~~~~~ 191 (201)
|++++|.....+...... ..+...+...|......++++
T Consensus 165 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~ 205 (217)
T 2pl2_A 165 GRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAA 205 (217)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHH
Confidence 999999776666543222 223334555555555444443
No 3
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.94 E-value=1.4e-24 Score=179.93 Aligned_cols=160 Identities=20% Similarity=0.146 Sum_probs=152.9
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD 83 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 83 (201)
.-++..+..+|++++|+..|+++++.+|++..++..+|.++..+|++++|+..|+++++++|+++.++..+|.++..+|+
T Consensus 13 ~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~ 92 (723)
T 4gyw_A 13 NNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 92 (723)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 34667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhH
Q psy12642 84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKK 163 (201)
Q Consensus 84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 163 (201)
+++|+.+|+++++++|+++.++.++|.++...| ++++|+..|+++++++|+++.++.+++.++..+|++++|....+
T Consensus 93 ~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g---~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~ 169 (723)
T 4gyw_A 93 VQGALQCYTRAIQINPAFADAHSNLASIHKDSG---NIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMK 169 (723)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHH
Confidence 999999999999999999999999999999999 99999999999999999999999999999999999999976555
Q ss_pred HHH
Q psy12642 164 KEI 166 (201)
Q Consensus 164 ~~~ 166 (201)
+..
T Consensus 170 kal 172 (723)
T 4gyw_A 170 KLV 172 (723)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 4
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.93 E-value=6.9e-25 Score=157.51 Aligned_cols=155 Identities=12% Similarity=0.048 Sum_probs=140.3
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhcCCCHHHHH
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAK-----------NKIPEAIKELTEYLKKFMTDQETWQ 72 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~-----------~~~~~A~~~~~~~~~~~p~~~~~~~ 72 (201)
...+..+...|++++|+..|+++++.+|+++.++..+|.++... |++++|+..++++++.+|+++.++.
T Consensus 43 ~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~ 122 (217)
T 2pl2_A 43 YWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHL 122 (217)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHH
Confidence 44667788999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHh
Q psy12642 73 ELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQV 152 (201)
Q Consensus 73 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 152 (201)
.+|.++...|++++|+..|++++.++ +++.++..+|.++...| ++++|+..|+++++.+|+++.++..++.++...
T Consensus 123 ~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~ 198 (217)
T 2pl2_A 123 QRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMG---RLDEALAQYAKALEQAPKDLDLRVRYASALLLK 198 (217)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 99999999999999999999999999 99999999999999999 999999999999999999999999999999999
Q ss_pred hhhhhhhhhh
Q psy12642 153 LTSAKCSAAK 162 (201)
Q Consensus 153 ~~~~~a~~~~ 162 (201)
|++++|....
T Consensus 199 g~~~~A~~~~ 208 (217)
T 2pl2_A 199 GKAEEAARAA 208 (217)
T ss_dssp ----------
T ss_pred cCHHHHHHHH
Confidence 9999996543
No 5
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.93 E-value=1e-25 Score=152.95 Aligned_cols=145 Identities=13% Similarity=-0.046 Sum_probs=135.6
Q ss_pred HHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHH
Q psy12642 7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAK 86 (201)
Q Consensus 7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 86 (201)
+..+...|++++|+..+++++..+|.++..++.+|.+|...|++++|+..++++++.+|+++.+|..+|.+|...|++++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHH
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHH-HHHHHcCCcccHHHHHHHHHHHHHhhh
Q psy12642 87 AVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISH-YLMAINLNEKNIRALYGLALSCHQVLT 154 (201)
Q Consensus 87 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~-~~~al~~~p~~~~~~~~l~~~~~~~~~ 154 (201)
|+.+|++++.++|+++.+++.+|.++...+ ++++|... ++++++++|+++.++...+.++...|+
T Consensus 84 A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 84 AVECYRRSVELNPTQKDLVLKIAELLCKND---VTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHC---SSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999999 99887765 589999999999999999999888775
No 6
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.93 E-value=5.9e-23 Score=148.01 Aligned_cols=149 Identities=17% Similarity=0.121 Sum_probs=142.8
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDE-TNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG 82 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 82 (201)
+..+..++..|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..+++++..+|+++.++..+|.++..+|
T Consensus 11 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 90 (228)
T 4i17_A 11 KNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMK 90 (228)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcc
Confidence 4466778999999999999999999998 899999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhcCCCCH-------HHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc--cHHHHHHHHHHHHHhh
Q psy12642 83 DYAKAVFCMEELFLHHPHNH-------LLHQRYADILYTQGGLENIELAISHYLMAINLNEK--NIRALYGLALSCHQVL 153 (201)
Q Consensus 83 ~~~~A~~~~~~al~~~~~~~-------~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~ 153 (201)
++++|+..+++++..+|+++ .++..+|.++...| ++++|+..|+++++++|+ ++.++.+++.+|...|
T Consensus 91 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~ 167 (228)
T 4i17_A 91 NNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAG---NIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNG 167 (228)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhc---cHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHH
Confidence 99999999999999999999 66999999999999 999999999999999999 9999999999999999
Q ss_pred hh
Q psy12642 154 TS 155 (201)
Q Consensus 154 ~~ 155 (201)
+.
T Consensus 168 ~~ 169 (228)
T 4i17_A 168 AD 169 (228)
T ss_dssp HH
T ss_pred HH
Confidence 86
No 7
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.91 E-value=1.5e-22 Score=146.42 Aligned_cols=193 Identities=15% Similarity=0.101 Sum_probs=147.6
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD 83 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 83 (201)
+..+..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++..|++..++..+|.++...|+
T Consensus 27 ~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 106 (243)
T 2q7f_A 27 GQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEM 106 (243)
T ss_dssp ---------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcc
Confidence 34556678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhH
Q psy12642 84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKK 163 (201)
Q Consensus 84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 163 (201)
+++|+..+++++...|.++.++..+|.++...| ++++|+..++++++..|+++.++..++.++...|++++|.....
T Consensus 107 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 183 (243)
T 2q7f_A 107 YKEAKDMFEKALRAGMENGDLFYMLGTVLVKLE---QPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFA 183 (243)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTS---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999999999999999999 99999999999999999889999999999999999988876555
Q ss_pred HHHHHH--hHHHHHHHHHHHHhhhcchHHHHHHHhhcc
Q psy12642 164 KEISKQ--MMWVSKHLARQYEEQQGNTETLTELMSALQ 199 (201)
Q Consensus 164 ~~~~~~--~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~ 199 (201)
+..... ...+...+...|......+.++..+.+++.
T Consensus 184 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 184 AVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 443321 123444566667766666666655555443
No 8
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.91 E-value=1.4e-23 Score=162.48 Aligned_cols=151 Identities=11% Similarity=0.046 Sum_probs=141.6
Q ss_pred HHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642 5 VYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNK-IPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD 83 (201)
Q Consensus 5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 83 (201)
..+..+...|++++|+..|+++++.+|++..+|..+|.++..+|+ +++|+..+++++.++|++..+|+.+|.++..+|+
T Consensus 102 ~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~ 181 (382)
T 2h6f_A 102 YFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRD 181 (382)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccC
Confidence 345667788999999999999999999999999999999999997 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHh-hhhhhh
Q psy12642 84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQV-LTSAKC 158 (201)
Q Consensus 84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-~~~~~a 158 (201)
+++|+.+|++++.++|++..+|+.+|.++...| ++++|+.+|+++++++|++..+|.+++.++..+ |..++|
T Consensus 182 ~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g---~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 182 PSQELEFIADILNQDAKNYHAWQHRQWVIQEFK---LWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT---CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHH
Confidence 999999999999999999999999999999999 999999999999999999999999999999994 443666
No 9
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.91 E-value=4.4e-23 Score=135.91 Aligned_cols=121 Identities=15% Similarity=0.047 Sum_probs=116.0
Q ss_pred HHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHH
Q psy12642 26 IIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLH 105 (201)
Q Consensus 26 ~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 105 (201)
+..++|+....+..+|..++..|++++|+..|+++++.+|+++.+|..+|.+|..+|++++|+..|++++.++|+++.++
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 44579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Q psy12642 106 QRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSC 149 (201)
Q Consensus 106 ~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 149 (201)
+.+|.++...| ++++|+..|+++++++|+++.++.+++.|+
T Consensus 85 ~~lg~~~~~~~---~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMR---EWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999 999999999999999999999999998774
No 10
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.91 E-value=3.6e-22 Score=153.11 Aligned_cols=194 Identities=13% Similarity=0.095 Sum_probs=158.3
Q ss_pred hHHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q psy12642 3 PIVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG 82 (201)
Q Consensus 3 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 82 (201)
.+..+..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.+|...|
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 147 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTS 147 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccc
Confidence 45567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhcCCC----------------------------------------------CHHHHHHHHHHHHHcC
Q psy12642 83 DYAKAVFCMEELFLHHPH----------------------------------------------NHLLHQRYADILYTQG 116 (201)
Q Consensus 83 ~~~~A~~~~~~al~~~~~----------------------------------------------~~~~~~~la~~~~~~~ 116 (201)
++++|+..|++++..+|+ ++.++..+|.++...|
T Consensus 148 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g 227 (365)
T 4eqf_A 148 HQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSG 227 (365)
T ss_dssp CHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCC
Confidence 988888888887766543 6778888888888888
Q ss_pred CcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH--hHHHHHHHHHHHHhhhcchHHHHHH
Q psy12642 117 GLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQ--MMWVSKHLARQYEEQQGNTETLTEL 194 (201)
Q Consensus 117 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~l~~~y~~~~~~~~~~~~~ 194 (201)
++++|+..|+++++.+|+++.++..++.++...|++++|.....+..... ...+...+...|......++++..+
T Consensus 228 ---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 304 (365)
T 4eqf_A 228 ---EFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNF 304 (365)
T ss_dssp ---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 89999999999998888888888999999999998888877655544321 1334445666677666666666555
Q ss_pred Hhhcc
Q psy12642 195 MSALQ 199 (201)
Q Consensus 195 ~~~~~ 199 (201)
.+++.
T Consensus 305 ~~al~ 309 (365)
T 4eqf_A 305 LTALS 309 (365)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 11
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.91 E-value=5.5e-22 Score=153.34 Aligned_cols=151 Identities=21% Similarity=0.175 Sum_probs=88.2
Q ss_pred HHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHH
Q psy12642 7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAK 86 (201)
Q Consensus 7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 86 (201)
+..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++
T Consensus 142 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~ 221 (388)
T 1w3b_A 142 GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDR 221 (388)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Confidence 34445556666666666666666666666666666666666666666666666665555555555555555555555555
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642 87 AVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSA 160 (201)
Q Consensus 87 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 160 (201)
|+..|++++..+|+++.++..+|.++...| ++++|+..|+++++.+|+++.++..++.++...|++++|..
T Consensus 222 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 292 (388)
T 1w3b_A 222 AVAAYLRALSLSPNHAVVHGNLACVYYEQG---LIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAED 292 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHhhCcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 555555555555555555555555555555 55555555555555555555555555555555555555544
No 12
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.91 E-value=5.9e-22 Score=149.17 Aligned_cols=191 Identities=13% Similarity=0.008 Sum_probs=143.5
Q ss_pred HHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642 5 VYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKN-KIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD 83 (201)
Q Consensus 5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 83 (201)
.++..+...|++++|+..++++++.+|.++.++..+|.++...| ++++|+..+++++..+|+++.+|..+|.++...|+
T Consensus 61 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 140 (330)
T 3hym_B 61 VHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESE 140 (330)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccC
Confidence 35566777788888888888888888888888888888888888 88888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhH
Q psy12642 84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKK 163 (201)
Q Consensus 84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 163 (201)
+++|+..+++++...|++...+..+|.++...| ++++|+..|+++++.+|+++.++..++.++...|++++|.....
T Consensus 141 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 217 (330)
T 3hym_B 141 HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTN---NSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFL 217 (330)
T ss_dssp HHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHH
Confidence 888888888888888888888888888888888 88888888888888888888888888888888888888866554
Q ss_pred HHHHHH---------h--HHHHHHHHHHHHhhhcchHHHHHHHhhc
Q psy12642 164 KEISKQ---------M--MWVSKHLARQYEEQQGNTETLTELMSAL 198 (201)
Q Consensus 164 ~~~~~~---------~--~~~~~~l~~~y~~~~~~~~~~~~~~~~~ 198 (201)
+..... . ..+...+...|......++++..+.+++
T Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 263 (330)
T 3hym_B 218 DALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQAL 263 (330)
T ss_dssp HHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 443321 1 1233445555655555555555444443
No 13
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.91 E-value=1.3e-21 Score=151.29 Aligned_cols=192 Identities=17% Similarity=0.080 Sum_probs=142.8
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYA 85 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 85 (201)
.+..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...|+++.++..+|.++...|+++
T Consensus 175 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 254 (388)
T 1w3b_A 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLID 254 (388)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHH
Confidence 44556777788888888888888888888888888888888888888888888888888888778888888888888888
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHH
Q psy12642 86 KAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKE 165 (201)
Q Consensus 86 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 165 (201)
+|+..|++++..+|+++.++..+|.++...| ++++|+..|+++++.+|+++.++..++.++...|+.++|.....+.
T Consensus 255 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 331 (388)
T 1w3b_A 255 LAIDTYRRAIELQPHFPDAYCNLANALKEKG---SVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKA 331 (388)
T ss_dssp HHHHHHHHHHHTCSSCHHHHHHHHHHHHHHS---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888888888887878888888888888 7888888888888888877778888888888888877776655444
Q ss_pred HHHH--hHHHHHHHHHHHHhhhcchHHHHHHHhhccC
Q psy12642 166 ISKQ--MMWVSKHLARQYEEQQGNTETLTELMSALQV 200 (201)
Q Consensus 166 ~~~~--~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~ 200 (201)
.... ...+...+...|......++++..+.+++.+
T Consensus 332 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 332 LEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3221 1234445666677777666666666666554
No 14
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.90 E-value=9.9e-23 Score=157.76 Aligned_cols=178 Identities=12% Similarity=0.066 Sum_probs=153.5
Q ss_pred HHHHHhhhhccC-HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q psy12642 4 IVYIIGCFHFFR-YEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG 82 (201)
Q Consensus 4 ~~~~~~~~~~~~-~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 82 (201)
...+..+...|+ +++|+..|+++++.+|++..+|..+|.++..+|++++|+..+++++.++|++..+|+.+|.++..+|
T Consensus 135 ~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g 214 (382)
T 2h6f_A 135 HFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFK 214 (382)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcC
Confidence 445667888896 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-cCCcccHHHH-----HHHHHHHHcCCcccHHHHHHHHHHHHHhh--h
Q psy12642 83 DYAKAVFCMEELFLHHPHNHLLHQRYADILYT-QGGLENIELA-----ISHYLMAINLNEKNIRALYGLALSCHQVL--T 154 (201)
Q Consensus 83 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~~~~~~~~A-----~~~~~~al~~~p~~~~~~~~l~~~~~~~~--~ 154 (201)
++++|+.+|++++.++|++..+|..+|.++.. .+ ..++| +.+|++++.++|++..+|.+++.++...| +
T Consensus 215 ~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~---~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~ 291 (382)
T 2h6f_A 215 LWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG---YNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSK 291 (382)
T ss_dssp CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---SCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGG
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC---cchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccc
Confidence 99999999999999999999999999999999 55 44677 69999999999999999999999999988 4
Q ss_pred hhhhhhhhHHH-HHHHhHHHHHHHHHHHHhh
Q psy12642 155 SAKCSAAKKKE-ISKQMMWVSKHLARQYEEQ 184 (201)
Q Consensus 155 ~~~a~~~~~~~-~~~~~~~~~~~l~~~y~~~ 184 (201)
+.++.....+. ...-..++...+...|.++
T Consensus 292 ~~~a~~~~~~~~~~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 292 YPNLLNQLLDLQPSHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp CHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 66664433221 1111235556667777665
No 15
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.90 E-value=8.2e-22 Score=151.11 Aligned_cols=184 Identities=16% Similarity=0.144 Sum_probs=153.9
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-------------------
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKF------------------- 64 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------------------- 64 (201)
...+..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++..
T Consensus 103 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 182 (365)
T 4eqf_A 103 QFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRR 182 (365)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHH
Confidence 3456667788888888888888888888888888888888888888888877777766544
Q ss_pred -------------------------CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCC
Q psy12642 65 -------------------------MT--DQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGG 117 (201)
Q Consensus 65 -------------------------p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~ 117 (201)
|+ ++.++..+|.++...|++++|+.+|++++..+|+++.++..+|.++...|
T Consensus 183 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g- 261 (365)
T 4eqf_A 183 MSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGD- 261 (365)
T ss_dssp ------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-
Confidence 44 78899999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH--------------hHHHHHHHHHHHHh
Q psy12642 118 LENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQ--------------MMWVSKHLARQYEE 183 (201)
Q Consensus 118 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------~~~~~~~l~~~y~~ 183 (201)
++++|+..|+++++.+|+++.++..++.++...|++++|.....+..... .......+...+..
T Consensus 262 --~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 339 (365)
T 4eqf_A 262 --RSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSL 339 (365)
T ss_dssp --CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999977666554322 12344556666666
Q ss_pred hhcchHH
Q psy12642 184 QQGNTET 190 (201)
Q Consensus 184 ~~~~~~~ 190 (201)
....+.+
T Consensus 340 ~g~~~~a 346 (365)
T 4eqf_A 340 MDQPELF 346 (365)
T ss_dssp HTCHHHH
T ss_pred cCcHHHH
Confidence 5555443
No 16
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.90 E-value=1.1e-21 Score=144.44 Aligned_cols=191 Identities=13% Similarity=0.118 Sum_probs=119.2
Q ss_pred HHHHhhhhccCHHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy12642 5 VYIIGCFHFFRYEEALEHLETIIKIDETN----TAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLS 80 (201)
Q Consensus 5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 80 (201)
..+..+...|++++|+..++++++ .|.+ ..++..+|.++...|++++|+..++++++.+|+++.++..+|.++..
T Consensus 42 ~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 120 (272)
T 3u4t_A 42 RRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN 120 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 344556666666666666666666 2222 23466666677777777777777777777777776677777777777
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhh---hhh
Q psy12642 81 EGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT---SAK 157 (201)
Q Consensus 81 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~---~~~ 157 (201)
.|++++|+.+|++++..+|.++.++..+|...+..+ ++++|+..|+++++.+|+++.++..++.++..+|+ .++
T Consensus 121 ~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 197 (272)
T 3u4t_A 121 KGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNK---EYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGL 197 (272)
T ss_dssp TTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCT
T ss_pred ccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHH
Confidence 777777777777777777777777777774444455 67777777777777777777777777777777776 555
Q ss_pred hhhhhHHHHHHH----------hHHHHHHHHHHHHhhhcchHHHHHHHhhcc
Q psy12642 158 CSAAKKKEISKQ----------MMWVSKHLARQYEEQQGNTETLTELMSALQ 199 (201)
Q Consensus 158 a~~~~~~~~~~~----------~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~ 199 (201)
|.....+..... ...+...+...|......++++..+.+++.
T Consensus 198 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 249 (272)
T 3u4t_A 198 AKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILA 249 (272)
T ss_dssp THHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 544433332211 113334455666666555556665555544
No 17
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.90 E-value=1.5e-22 Score=161.04 Aligned_cols=159 Identities=11% Similarity=-0.034 Sum_probs=150.4
Q ss_pred HHHHHhhhhccCH-HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-
Q psy12642 4 IVYIIGCFHFFRY-EEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSE- 81 (201)
Q Consensus 4 ~~~~~~~~~~~~~-~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~- 81 (201)
+..+..+...|++ ++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+ ..++..+|.++...
T Consensus 106 ~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~ 184 (474)
T 4abn_A 106 MLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQ 184 (474)
T ss_dssp HHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhc
Confidence 4456778899999 99999999999999999999999999999999999999999999999999 79999999999999
Q ss_pred --------CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHc--------CCcccHHHHHHHHHHHHcCCc---ccHHHH
Q psy12642 82 --------GDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQ--------GGLENIELAISHYLMAINLNE---KNIRAL 142 (201)
Q Consensus 82 --------~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~--------~~~~~~~~A~~~~~~al~~~p---~~~~~~ 142 (201)
|++++|+..|++++..+|+++.++..+|.++... + ++++|+.+|+++++++| +++.++
T Consensus 185 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~ 261 (474)
T 4abn_A 185 TDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPK---ISQQALSAYAQAEKVDRKASSNPDLH 261 (474)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHH---HHHHHHHHHHHHHHHCGGGGGCHHHH
T ss_pred cCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccc---hHHHHHHHHHHHHHhCCCcccCHHHH
Confidence 9999999999999999999999999999999998 8 99999999999999999 999999
Q ss_pred HHHHHHHHHhhhhhhhhhhhHHHH
Q psy12642 143 YGLALSCHQVLTSAKCSAAKKKEI 166 (201)
Q Consensus 143 ~~l~~~~~~~~~~~~a~~~~~~~~ 166 (201)
++++.++...|++++|.....+..
T Consensus 262 ~~lg~~~~~~g~~~~A~~~~~~al 285 (474)
T 4abn_A 262 LNRATLHKYEESYGEALEGFSQAA 285 (474)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999977665544
No 18
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.90 E-value=4e-21 Score=137.09 Aligned_cols=160 Identities=14% Similarity=0.011 Sum_probs=150.4
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-C
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSE-G 82 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-~ 82 (201)
...+..+...|++++|+..++++++.+|.++.++..+|.++...|++++|+..+++++...|+++.++..+|.++... |
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 91 (225)
T 2vq2_A 12 TQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLN 91 (225)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcC
Confidence 445677889999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642 83 DYAKAVFCMEELFL--HHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSA 160 (201)
Q Consensus 83 ~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 160 (201)
++++|+..+++++. ..|.+..++..+|.++...| ++++|+.+|+++++..|+++.++..++.++...|++++|..
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 168 (225)
T 2vq2_A 92 RPAESMAYFDKALADPTYPTPYIANLNKGICSAKQG---QFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADY 168 (225)
T ss_dssp CHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999 66777899999999999999 99999999999999999999999999999999999999977
Q ss_pred hhHHHH
Q psy12642 161 AKKKEI 166 (201)
Q Consensus 161 ~~~~~~ 166 (201)
...+..
T Consensus 169 ~~~~~~ 174 (225)
T 2vq2_A 169 YFKKYQ 174 (225)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 19
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.90 E-value=4.9e-22 Score=141.72 Aligned_cols=161 Identities=13% Similarity=0.071 Sum_probs=141.0
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKR----------------KICILKAKNKIPEAIKELTEYLKKFMTD 67 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~----------------~a~~~~~~~~~~~A~~~~~~~~~~~p~~ 67 (201)
+..+..++..|++++|+..|+++++.+|+++.+++. +|.++...|++++|+..++++++.+|++
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 87 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNN 87 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence 445677889999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHH
Q psy12642 68 QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLAL 147 (201)
Q Consensus 68 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 147 (201)
+.++..+|.++...|++++|+.+|++++.++|+++.+++.+|.+++..+. .....+...+.+++...|. ..+++.++.
T Consensus 88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~a~~~~g~ 165 (208)
T 3urz_A 88 VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE-QEKKKLETDYKKLSSPTKM-QYARYRDGL 165 (208)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH-HHHHHHHHHHC---CCCHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHhCCCch-hHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987650 0355678888888765554 346788999
Q ss_pred HHHHhhhhhhhhhhhHHHH
Q psy12642 148 SCHQVLTSAKCSAAKKKEI 166 (201)
Q Consensus 148 ~~~~~~~~~~a~~~~~~~~ 166 (201)
++...|++++|.....+..
T Consensus 166 ~~~~~~~~~~A~~~~~~al 184 (208)
T 3urz_A 166 SKLFTTRYEKARNSLQKVI 184 (208)
T ss_dssp HHHHHHTHHHHHHHHHHHT
T ss_pred HHHHccCHHHHHHHHHHHH
Confidence 9999999999977666554
No 20
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.90 E-value=6.9e-22 Score=136.87 Aligned_cols=157 Identities=18% Similarity=0.115 Sum_probs=149.3
Q ss_pred HHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Q psy12642 5 VYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDY 84 (201)
Q Consensus 5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 84 (201)
..+..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..++++++..|+++.++..+|.++...|++
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 92 (186)
T 3as5_A 13 DKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKY 92 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCH
Confidence 45667888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHH
Q psy12642 85 AKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKK 164 (201)
Q Consensus 85 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 164 (201)
++|+.++++++..+|.++..+..+|.++...| ++++|+..++++++..|+++.++..++.++...|+.++|.....+
T Consensus 93 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 169 (186)
T 3as5_A 93 DLAVPLLIKVAEANPINFNVRFRLGVALDNLG---RFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKK 169 (186)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcC---cHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999 999999999999999999999999999999999999999554443
No 21
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.90 E-value=7.1e-22 Score=145.22 Aligned_cols=160 Identities=14% Similarity=0.130 Sum_probs=144.0
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHH
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETN---TAARKRKICILKAKNKIPEAIKELTEYLKKFMTD---QETWQELCDL 77 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~ 77 (201)
+..+..++..|++++|+..|+++++.+|.+ +.+++.+|.++...|++++|+..++++++.+|++ +.+++.+|.+
T Consensus 19 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~ 98 (261)
T 3qky_A 19 FERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMC 98 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHH
Confidence 445677899999999999999999999998 8999999999999999999999999999998865 6789999999
Q ss_pred HHh--------cCCHHHHHHHHHHHhhcCCCCHHHH-----------------HHHHHHHHHcCCcccHHHHHHHHHHHH
Q psy12642 78 YLS--------EGDYAKAVFCMEELFLHHPHNHLLH-----------------QRYADILYTQGGLENIELAISHYLMAI 132 (201)
Q Consensus 78 ~~~--------~~~~~~A~~~~~~al~~~~~~~~~~-----------------~~la~~~~~~~~~~~~~~A~~~~~~al 132 (201)
+.. .|++++|+..|++++..+|+++... +.+|.++...| ++++|+..|++++
T Consensus 99 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l 175 (261)
T 3qky_A 99 YYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRE---LYEAAAVTYEAVF 175 (261)
T ss_dssp HHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---CHHHHHHHHHHHH
Confidence 999 9999999999999999999987665 88899999999 9999999999999
Q ss_pred cCCcc---cHHHHHHHHHHHHHh----------hhhhhhhhhhHHHH
Q psy12642 133 NLNEK---NIRALYGLALSCHQV----------LTSAKCSAAKKKEI 166 (201)
Q Consensus 133 ~~~p~---~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~ 166 (201)
+..|+ .+.+++.++.+|..+ |++++|....++..
T Consensus 176 ~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~ 222 (261)
T 3qky_A 176 DAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLL 222 (261)
T ss_dssp HHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHH
T ss_pred HHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHH
Confidence 99998 678999999999988 66677755544443
No 22
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.90 E-value=1.6e-21 Score=142.11 Aligned_cols=187 Identities=11% Similarity=-0.008 Sum_probs=159.1
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD 83 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 83 (201)
+..+..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|+
T Consensus 41 ~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 120 (252)
T 2ho1_A 41 IQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKR 120 (252)
T ss_dssp HHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhH
Confidence 44566788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhh
Q psy12642 84 YAKAVFCMEELFL--HHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAA 161 (201)
Q Consensus 84 ~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 161 (201)
+++|+.++++++. ..|.++.++..+|.++...| ++++|+.+|+++++..|+++.++..++.++...|++++|...
T Consensus 121 ~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 197 (252)
T 2ho1_A 121 YEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMK---KPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQY 197 (252)
T ss_dssp HHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999 88888999999999999999 999999999999999999999999999999999999999765
Q ss_pred hHHHHHHH--hHHHHHHHHHHHHhhhcchHHHHH
Q psy12642 162 KKKEISKQ--MMWVSKHLARQYEEQQGNTETLTE 193 (201)
Q Consensus 162 ~~~~~~~~--~~~~~~~l~~~y~~~~~~~~~~~~ 193 (201)
..+..... ...+...+...|......+.+...
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 231 (252)
T 2ho1_A 198 YDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASY 231 (252)
T ss_dssp HHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 55433211 112233344445544444444333
No 23
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=8.3e-22 Score=143.47 Aligned_cols=155 Identities=14% Similarity=0.164 Sum_probs=98.3
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-------HHHHHHHHHHH
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD-------QETWQELCDLY 78 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~ 78 (201)
.+..++..|++++|+..|+++++.+ .++.++..+|.++...|++++|+..+++++...|++ +.++..+|.++
T Consensus 11 ~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 89 (258)
T 3uq3_A 11 EGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAY 89 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHH
Confidence 4455566666666666666666666 666666666666666666666666666666666554 45666666666
Q ss_pred HhcCCHHHHHHHHHHHhh--------------------------cCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Q psy12642 79 LSEGDYAKAVFCMEELFL--------------------------HHPHNHLLHQRYADILYTQGGLENIELAISHYLMAI 132 (201)
Q Consensus 79 ~~~~~~~~A~~~~~~al~--------------------------~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al 132 (201)
...|++++|+.+|++++. .+|.++.++..+|.++...| ++++|+..|++++
T Consensus 90 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~a~ 166 (258)
T 3uq3_A 90 HKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKS---DWPNAVKAYTEMI 166 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhc---CHHHHHHHHHHHH
Confidence 666666666666666666 44455556666666666666 6666666666666
Q ss_pred cCCcccHHHHHHHHHHHHHhhhhhhhhhhhHH
Q psy12642 133 NLNEKNIRALYGLALSCHQVLTSAKCSAAKKK 164 (201)
Q Consensus 133 ~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 164 (201)
+.+|+++.++..++.++...|++++|.....+
T Consensus 167 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 198 (258)
T 3uq3_A 167 KRAPEDARGYSNRAAALAKLMSFPEAIADCNK 198 (258)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 66666666666666666666666666554433
No 24
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.90 E-value=1.7e-21 Score=140.89 Aligned_cols=160 Identities=14% Similarity=0.121 Sum_probs=151.3
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD 83 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 83 (201)
...+..+...|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++..|.++.++..+|.++...|+
T Consensus 61 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 140 (243)
T 2q7f_A 61 INFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQ 140 (243)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Confidence 34566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhH
Q psy12642 84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKK 163 (201)
Q Consensus 84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 163 (201)
+++|+..+++++...|.++.++..+|.++...| ++++|+..|+++++.+|+++.++..++.++...|+.++|....+
T Consensus 141 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 217 (243)
T 2q7f_A 141 PKLALPYLQRAVELNENDTEARFQFGMCLANEG---MLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLD 217 (243)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT---CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 999999999999999999999999999999999 99999999999999999999999999999999999999966554
Q ss_pred HHH
Q psy12642 164 KEI 166 (201)
Q Consensus 164 ~~~ 166 (201)
+..
T Consensus 218 ~~~ 220 (243)
T 2q7f_A 218 KAI 220 (243)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 25
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.90 E-value=2.8e-21 Score=145.44 Aligned_cols=194 Identities=11% Similarity=0.017 Sum_probs=161.8
Q ss_pred HHHHHhhhhcc-CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q psy12642 4 IVYIIGCFHFF-RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG 82 (201)
Q Consensus 4 ~~~~~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 82 (201)
...+..+...| ++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++..|++..++..+|.++...|
T Consensus 94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 94 FAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 34556677888 89999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCC---------cccHHHHHHHHHHHHHhh
Q psy12642 83 DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLN---------EKNIRALYGLALSCHQVL 153 (201)
Q Consensus 83 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~l~~~~~~~~ 153 (201)
++++|+..+++++..+|.++.++..+|.++...| ++++|+..++++++.. |..+.++..++.++...|
T Consensus 174 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 174 NSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNG---EWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999 9999999999999876 666788999999999999
Q ss_pred hhhhhhhhhHHHHHH--HhHHHHHHHHHHHHhhhcchHHHHHHHhhccC
Q psy12642 154 TSAKCSAAKKKEISK--QMMWVSKHLARQYEEQQGNTETLTELMSALQV 200 (201)
Q Consensus 154 ~~~~a~~~~~~~~~~--~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~ 200 (201)
++++|.....+.... -...+...+...|......++++..+.+++.+
T Consensus 251 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 251 KYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred CHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 999997765554432 12344455667777777666677776666654
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.89 E-value=7.7e-21 Score=145.46 Aligned_cols=90 Identities=13% Similarity=0.019 Sum_probs=47.5
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYA 85 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 85 (201)
.+..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|+++
T Consensus 70 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~ 149 (368)
T 1fch_A 70 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQR 149 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Confidence 34445555555555555555555555555555555555555555555555555555555555555555555555555544
Q ss_pred HHHHHHHHHh
Q psy12642 86 KAVFCMEELF 95 (201)
Q Consensus 86 ~A~~~~~~al 95 (201)
+|+..+++++
T Consensus 150 ~A~~~~~~~~ 159 (368)
T 1fch_A 150 QACEILRDWL 159 (368)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 27
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.89 E-value=9.1e-21 Score=145.04 Aligned_cols=154 Identities=12% Similarity=0.034 Sum_probs=105.4
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH-----------
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQ----------- 72 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~----------- 72 (201)
...+..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++...|++...+.
T Consensus 102 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (368)
T 1fch_A 102 QYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGL 181 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-----------
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcc
Confidence 445677889999999999999999999999999999999999999999999999999998877544332
Q ss_pred -----HHHHHHHhcCCHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHH
Q psy12642 73 -----ELCDLYLSEGDYAKAVFCMEELFLHHPH--NHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGL 145 (201)
Q Consensus 73 -----~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 145 (201)
.++.++ ..|++++|+..|++++..+|. ++.++..+|.++...| ++++|+..|++++..+|+++.++..+
T Consensus 182 ~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~l 257 (368)
T 1fch_A 182 GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG---EYDKAVDCFTAALSVRPNDYLLWNKL 257 (368)
T ss_dssp ----CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 233333 455555555555555555555 4555555555555555 55555555555555555555555555
Q ss_pred HHHHHHhhhhhhhhhh
Q psy12642 146 ALSCHQVLTSAKCSAA 161 (201)
Q Consensus 146 ~~~~~~~~~~~~a~~~ 161 (201)
+.++...|++++|...
T Consensus 258 ~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 258 GATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHTTCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHH
Confidence 5555555555555443
No 28
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=9e-22 Score=143.29 Aligned_cols=160 Identities=16% Similarity=0.064 Sum_probs=148.5
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCccc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETN-------TAARKRKICILKAKNKIPEAIKELTEYLK-------------- 62 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-------------- 62 (201)
...+..+...|++++|+..++++++.+|.+ +.++..+|.++...|++++|+..+++++.
T Consensus 42 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 121 (258)
T 3uq3_A 42 NNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNA 121 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHH
Confidence 446677889999999999999999999877 79999999999999999999999999999
Q ss_pred ------------hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHH
Q psy12642 63 ------------KFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLM 130 (201)
Q Consensus 63 ------------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~ 130 (201)
.+|.++.++..+|.++...|++++|+.++++++..+|.++.++..+|.++...| ++++|+..|++
T Consensus 122 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~ 198 (258)
T 3uq3_A 122 EKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLM---SFPEAIADCNK 198 (258)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhC---CHHHHHHHHHH
Confidence 566678899999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q psy12642 131 AINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEI 166 (201)
Q Consensus 131 al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 166 (201)
+++.+|+++.++..++.++...|+.++|....++..
T Consensus 199 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 199 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999999999999999999999966555444
No 29
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=3.6e-21 Score=146.24 Aligned_cols=192 Identities=14% Similarity=0.050 Sum_probs=159.0
Q ss_pred hHHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q psy12642 3 PIVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG 82 (201)
Q Consensus 3 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 82 (201)
.+..+..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++..|+++.++..+|.++...|
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQG 85 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcC
Confidence 34566778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhcCC---CCHHHHHHH------------HHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHH
Q psy12642 83 DYAKAVFCMEELFLHHP---HNHLLHQRY------------ADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLAL 147 (201)
Q Consensus 83 ~~~~A~~~~~~al~~~~---~~~~~~~~l------------a~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 147 (201)
++++|+..|++++..+| +++..+..+ |.++...| ++++|+..++++++.+|+++.++..++.
T Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 162 (359)
T 3ieg_A 86 KLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGA---DYTAAITFLDKILEVCVWDAELRELRAE 162 (359)
T ss_dssp CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 99999999999999999 888887777 68888999 9999999999999999999999999999
Q ss_pred HHHHhhhhhhhhhhhHHHHHH--HhHHHHHHHHHHHHhhhcchHHHHHHHhh
Q psy12642 148 SCHQVLTSAKCSAAKKKEISK--QMMWVSKHLARQYEEQQGNTETLTELMSA 197 (201)
Q Consensus 148 ~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ 197 (201)
++...|++++|.....+.... ....+...+...|......+.++..+.++
T Consensus 163 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 163 CFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999997655444321 11223334555555555444444444333
No 30
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.89 E-value=7.1e-21 Score=132.61 Aligned_cols=166 Identities=19% Similarity=0.144 Sum_probs=150.9
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q psy12642 32 TNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADI 111 (201)
Q Consensus 32 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 111 (201)
+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.+|...|++++|+..+.+++...|+++.++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH--HhHHHHHHHHHHHHhhhcchH
Q psy12642 112 LYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISK--QMMWVSKHLARQYEEQQGNTE 189 (201)
Q Consensus 112 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~y~~~~~~~~ 189 (201)
+...+ +++.|+..+.+++..+|+++.++..+|.++..+|++++|....++.... ....+...+...|..+...++
T Consensus 83 ~~~~~---~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 83 NFMID---EKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcC---CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 99999 9999999999999999999999999999999999999998876665532 223455567888998888888
Q ss_pred HHHHHHhhccC
Q psy12642 190 TLTELMSALQV 200 (201)
Q Consensus 190 ~~~~~~~~~~~ 200 (201)
++..+.+++++
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 88888888765
No 31
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.89 E-value=1.4e-21 Score=143.82 Aligned_cols=160 Identities=15% Similarity=0.151 Sum_probs=145.0
Q ss_pred chHHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC----HHHHHHHHHH
Q psy12642 2 APIVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD----QETWQELCDL 77 (201)
Q Consensus 2 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~ 77 (201)
+.+.++..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++. .|.+ ..++..+|.+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHH
Confidence 3456788899999999999999999999999999999999999999999999999999999 4444 4458999999
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHH-HHHHHhhhhh
Q psy12642 78 YLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLA-LSCHQVLTSA 156 (201)
Q Consensus 78 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~-~~~~~~~~~~ 156 (201)
+...|++++|+.+|++++..+|.++.++..+|.++...| ++++|+.+|+++++.+|+++.++..++ .++. .++++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~ 159 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKG---NFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY-NKEYV 159 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTT---CHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH-TTCHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcc---CHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH-HHHHH
Confidence 999999999999999999999999999999999999999 999999999999999999999999999 5555 45888
Q ss_pred hhhhhhHHHH
Q psy12642 157 KCSAAKKKEI 166 (201)
Q Consensus 157 ~a~~~~~~~~ 166 (201)
+|.....+..
T Consensus 160 ~A~~~~~~a~ 169 (272)
T 3u4t_A 160 KADSSFVKVL 169 (272)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8876555443
No 32
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.89 E-value=2.1e-21 Score=160.98 Aligned_cols=168 Identities=15% Similarity=0.091 Sum_probs=149.0
Q ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHH
Q psy12642 29 IDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRY 108 (201)
Q Consensus 29 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 108 (201)
..|+++.++..+|.++..+|++++|+..|+++++++|++..++..+|.+|..+|++++|+.+|+++++++|+++.++.++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH--hHHHHHHHHHHHHhhhc
Q psy12642 109 ADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQ--MMWVSKHLARQYEEQQG 186 (201)
Q Consensus 109 a~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~l~~~y~~~~~ 186 (201)
|.++...| ++++|++.|+++++++|++..++.++|.++...|++++|....++...-- ...+...+...|.....
T Consensus 84 g~~l~~~g---~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 84 GNTLKEMQ---DVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence 99999999 99999999999999999999999999999999999999988776665322 23445567777877777
Q ss_pred chHHHHHHHhhcc
Q psy12642 187 NTETLTELMSALQ 199 (201)
Q Consensus 187 ~~~~~~~~~~~~~ 199 (201)
.+++.+.+-+++.
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7776665555443
No 33
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=1.7e-20 Score=147.25 Aligned_cols=192 Identities=15% Similarity=0.077 Sum_probs=164.4
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD 83 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 83 (201)
+..+..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.+|...|+
T Consensus 30 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 109 (450)
T 2y4t_A 30 LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGK 109 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 45667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCH---HHHHHH------------HHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHH
Q psy12642 84 YAKAVFCMEELFLHHPHNH---LLHQRY------------ADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALS 148 (201)
Q Consensus 84 ~~~A~~~~~~al~~~~~~~---~~~~~l------------a~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 148 (201)
+++|+..|++++..+|+++ ..+..+ |.++...| ++++|+..|+++++..|+++.++..++.+
T Consensus 110 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 186 (450)
T 2y4t_A 110 LDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSG---DYTAAIAFLDKILEVCVWDAELRELRAEC 186 (450)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 9999999999999999988 766555 66699999 99999999999999999999999999999
Q ss_pred HHHhhhhhhhhhhhHHHHHHH--hHHHHHHHHHHHHhhhcchHHHHHHHhhc
Q psy12642 149 CHQVLTSAKCSAAKKKEISKQ--MMWVSKHLARQYEEQQGNTETLTELMSAL 198 (201)
Q Consensus 149 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~l~~~y~~~~~~~~~~~~~~~~~ 198 (201)
+...|++++|.....+..... ...+...+...|......+.++..+.+++
T Consensus 187 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 187 FIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999977655544221 22344455666666665555555554443
No 34
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.88 E-value=2.4e-22 Score=136.23 Aligned_cols=122 Identities=11% Similarity=-0.043 Sum_probs=115.0
Q ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12642 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEEL 94 (201)
Q Consensus 15 ~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 94 (201)
++-.+-..++++++.+|+++.+++.+|.++...|++++|+..|++++..+|+++.+|..+|.++..+|++++|+.+|+++
T Consensus 17 ~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~a 96 (151)
T 3gyz_A 17 DAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVA 96 (151)
T ss_dssp HHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 34444456778888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccH
Q psy12642 95 FLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNI 139 (201)
Q Consensus 95 l~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 139 (201)
+.++|+++.+++.+|.++...| ++++|+..|++++++.|+.+
T Consensus 97 l~l~P~~~~~~~~lg~~~~~lg---~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 97 FALGKNDYTPVFHTGQCQLRLK---APLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHSSSCCHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCCCHH
T ss_pred HhhCCCCcHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999 99999999999999999865
No 35
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.88 E-value=2.5e-21 Score=139.44 Aligned_cols=143 Identities=15% Similarity=0.043 Sum_probs=133.7
Q ss_pred HHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-------HHHHHHHHH
Q psy12642 5 VYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ-------ETWQELCDL 77 (201)
Q Consensus 5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-------~~~~~l~~~ 77 (201)
..+..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++ .++..+|.+
T Consensus 47 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~ 126 (228)
T 4i17_A 47 NCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQK 126 (228)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHH
Confidence 3567788999999999999999999999999999999999999999999999999999999998 669999999
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHHcCCcccH---------------------------HHHHHHH
Q psy12642 78 YLSEGDYAKAVFCMEELFLHHPH--NHLLHQRYADILYTQGGLENI---------------------------ELAISHY 128 (201)
Q Consensus 78 ~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~~~---------------------------~~A~~~~ 128 (201)
+...|++++|+..|++++..+|+ ++.++..+|.++...| +. ++|+.+|
T Consensus 127 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 203 (228)
T 4i17_A 127 FQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNG---ADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYL 203 (228)
T ss_dssp HHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH---HHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHH---HHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 9999999999999888 76 8999999
Q ss_pred HHHHcCCcccHHHHHHHHHHHH
Q psy12642 129 LMAINLNEKNIRALYGLALSCH 150 (201)
Q Consensus 129 ~~al~~~p~~~~~~~~l~~~~~ 150 (201)
+++++++|+++.+...++.+..
T Consensus 204 ~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 204 GEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHhhcCCCCHHHHHHHHHHHH
Confidence 9999999999988887776643
No 36
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=1.5e-20 Score=142.74 Aligned_cols=159 Identities=19% Similarity=0.187 Sum_probs=149.6
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC---CCHHHHHHH------
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFM---TDQETWQEL------ 74 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~l------ 74 (201)
...+..+...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++..| +++.++..+
T Consensus 41 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 120 (359)
T 3ieg_A 41 YRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEM 120 (359)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHH
Confidence 44667788999999999999999999999999999999999999999999999999999999 888888777
Q ss_pred ------HHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHH
Q psy12642 75 ------CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALS 148 (201)
Q Consensus 75 ------~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 148 (201)
|.++...|++++|+..+++++..+|.++.++..+|.++...| ++++|+..++++++..|+++.++..++.+
T Consensus 121 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 197 (359)
T 3ieg_A 121 QRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEG---EPRKAISDLKAASKLKSDNTEAFYKISTL 197 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHhhhhhhhhhhhHHH
Q psy12642 149 CHQVLTSAKCSAAKKKE 165 (201)
Q Consensus 149 ~~~~~~~~~a~~~~~~~ 165 (201)
+...|++++|.....+.
T Consensus 198 ~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 198 YYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 99999999997755443
No 37
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.88 E-value=1.5e-20 Score=136.94 Aligned_cols=158 Identities=15% Similarity=0.051 Sum_probs=148.9
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHhc
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLK--KFMTDQETWQELCDLYLSE 81 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~ 81 (201)
...+..+...|++++|+..++++++.+|.+..++..+|.++...|++++|+..+++++. ..|.++.++..+|.++...
T Consensus 75 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 154 (252)
T 2ho1_A 75 AALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQM 154 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHc
Confidence 34566788999999999999999999999999999999999999999999999999999 8888899999999999999
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhh
Q psy12642 82 GDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAA 161 (201)
Q Consensus 82 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 161 (201)
|++++|+.++++++...|.++.++..+|.++...| ++++|+..++++++..|+++.++..++.++...|+.++|...
T Consensus 155 g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 231 (252)
T 2ho1_A 155 KKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKER---EYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASY 231 (252)
T ss_dssp TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 99999999999999999999999999999999999 999999999999999999999999999999999999998554
Q ss_pred hHH
Q psy12642 162 KKK 164 (201)
Q Consensus 162 ~~~ 164 (201)
.++
T Consensus 232 ~~~ 234 (252)
T 2ho1_A 232 GLQ 234 (252)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 38
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.88 E-value=6.5e-21 Score=137.38 Aligned_cols=156 Identities=11% Similarity=0.025 Sum_probs=139.5
Q ss_pred HHHHhhhhccCHHHHHHHHHHHHhcCcccH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH---HHHHHHHHH
Q psy12642 5 VYIIGCFHFFRYEEALEHLETIIKIDETNT---AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQE---TWQELCDLY 78 (201)
Q Consensus 5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~ 78 (201)
-.+..++..|++++|+..|++++...|.++ .+++.+|.++...|++++|+..|+++++.+|+++. +++.+|.++
T Consensus 9 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~ 88 (225)
T 2yhc_A 9 ATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTN 88 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHH
Confidence 345678999999999999999999988764 78999999999999999999999999999999864 788899988
Q ss_pred Hh------------------cCCHHHHHHHHHHHhhcCCCCHHHH-----------------HHHHHHHHHcCCcccHHH
Q psy12642 79 LS------------------EGDYAKAVFCMEELFLHHPHNHLLH-----------------QRYADILYTQGGLENIEL 123 (201)
Q Consensus 79 ~~------------------~~~~~~A~~~~~~al~~~~~~~~~~-----------------~~la~~~~~~~~~~~~~~ 123 (201)
.. .|++++|+..|++++..+|+++.+. ..+|.++...| ++++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~---~~~~ 165 (225)
T 2yhc_A 89 MALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERG---AWVA 165 (225)
T ss_dssp HHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---CHHH
T ss_pred HhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---cHHH
Confidence 76 6799999999999999999987554 57889999999 9999
Q ss_pred HHHHHHHHHcCCcccH---HHHHHHHHHHHHhhhhhhhhhhhH
Q psy12642 124 AISHYLMAINLNEKNI---RALYGLALSCHQVLTSAKCSAAKK 163 (201)
Q Consensus 124 A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~a~~~~~ 163 (201)
|+..|+++++..|+++ .+++.++.++.++|+.++|....+
T Consensus 166 A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~ 208 (225)
T 2yhc_A 166 VVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAK 208 (225)
T ss_dssp HHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 9999999999999875 689999999999999999965443
No 39
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.88 E-value=2e-21 Score=154.61 Aligned_cols=156 Identities=11% Similarity=-0.015 Sum_probs=148.7
Q ss_pred hHHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhcCCCHHHHHH
Q psy12642 3 PIVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAK---------NKIPEAIKELTEYLKKFMTDQETWQE 73 (201)
Q Consensus 3 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~~~~~~p~~~~~~~~ 73 (201)
....+..+...|++++|+..|+++++.+|+ ..++..+|.++... |++++|+..++++++.+|+++.+|..
T Consensus 140 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 218 (474)
T 4abn_A 140 WNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYI 218 (474)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 345677789999999999999999999999 79999999999999 99999999999999999999999999
Q ss_pred HHHHHHhc--------CCHHHHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHH
Q psy12642 74 LCDLYLSE--------GDYAKAVFCMEELFLHHP---HNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRAL 142 (201)
Q Consensus 74 l~~~~~~~--------~~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 142 (201)
+|.+|... |++++|+.+|++++.++| +++.+++.+|.++...| ++++|+..|+++++++|+++.++
T Consensus 219 lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~l~p~~~~a~ 295 (474)
T 4abn_A 219 LGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEE---SYGEALEGFSQAAALDPAWPEPQ 295 (474)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999 999999999999999999 99999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhhh
Q psy12642 143 YGLALSCHQVLTSAKCSAAK 162 (201)
Q Consensus 143 ~~l~~~~~~~~~~~~a~~~~ 162 (201)
..++.++..+|+.++|....
T Consensus 296 ~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 296 QREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999996543
No 40
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.87 E-value=9.8e-22 Score=132.94 Aligned_cols=132 Identities=11% Similarity=-0.045 Sum_probs=120.2
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q psy12642 19 ALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHH 98 (201)
Q Consensus 19 A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 98 (201)
+-..|++++..+|.+..+++.+|.++...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+.+|++++.++
T Consensus 6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhh
Q psy12642 99 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL 153 (201)
Q Consensus 99 ~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 153 (201)
|+++.+++.+|.++...| ++++|+..|+++++++|+++........+...+.
T Consensus 86 p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~ 137 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXG---ELAEAESGLFLAQELIANXPEFXELSTRVSSMLE 137 (148)
T ss_dssp TTCTHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHcC---CHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHH
Confidence 999999999999999999 9999999999999999887765444444444443
No 41
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.87 E-value=4.1e-21 Score=133.32 Aligned_cols=159 Identities=12% Similarity=0.043 Sum_probs=140.9
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-hcC
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYL-SEG 82 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~~ 82 (201)
+..+..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...| ++..+..++.+.. ..+
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhc
Confidence 44667788999999999999999999999999999999999999999999999999999999 8877766665533 333
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCccc--HHHHHHHHHHHHHhhhhhhhhh
Q psy12642 83 DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN--IRALYGLALSCHQVLTSAKCSA 160 (201)
Q Consensus 83 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~a~~ 160 (201)
...+|+..+++++..+|+++.+++.+|.++...| ++++|+..|+++++.+|+. +.++..++.++...|+.++|..
T Consensus 89 ~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 89 AESPELKRLEQELAANPDNFELACELAVQYNQVG---RDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp TSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 4456899999999999999999999999999999 9999999999999999975 6699999999999999999966
Q ss_pred hhHHHH
Q psy12642 161 AKKKEI 166 (201)
Q Consensus 161 ~~~~~~ 166 (201)
...+..
T Consensus 166 ~y~~al 171 (176)
T 2r5s_A 166 KYRRQL 171 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 42
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.87 E-value=1.3e-19 Score=147.09 Aligned_cols=155 Identities=12% Similarity=-0.008 Sum_probs=105.1
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYA 85 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 85 (201)
++..+...|++++|+..+++++...|.++.++..+|.++...|++++|+..|+++++..|.+..+|..+|.+|...|+++
T Consensus 345 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 424 (597)
T 2xpi_A 345 HLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHD 424 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 44445555556666666666556666666666667777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhH
Q psy12642 86 KAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKK 163 (201)
Q Consensus 86 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 163 (201)
+|+..|++++...|++...+..+|.++...| ++++|++.|+++++..|+++.++..++.++.+.|+.++|.....
T Consensus 425 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 499 (597)
T 2xpi_A 425 QAISAYTTAARLFQGTHLPYLFLGMQHMQLG---NILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQ 499 (597)
T ss_dssp HHHHHHHHHHHTTTTCSHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 7777777777777766667777777777777 77777777777777777767777777777777777766655443
No 43
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.87 E-value=1.1e-19 Score=142.55 Aligned_cols=191 Identities=15% Similarity=0.150 Sum_probs=159.8
Q ss_pred HHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHH
Q psy12642 7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAK 86 (201)
Q Consensus 7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 86 (201)
+..+...|++++|+..|+++++..|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++
T Consensus 150 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 229 (450)
T 2y4t_A 150 ALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHEL 229 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 45578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCHHHHHHH------------HHHHHHcCCcccHHHHHHHHHHHHcCCcccH----HHHHHHHHHHH
Q psy12642 87 AVFCMEELFLHHPHNHLLHQRY------------ADILYTQGGLENIELAISHYLMAINLNEKNI----RALYGLALSCH 150 (201)
Q Consensus 87 A~~~~~~al~~~~~~~~~~~~l------------a~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~ 150 (201)
|+..|++++..+|++...+..+ |.++...| ++++|+..|+++++..|+++ ..+..++.++.
T Consensus 230 A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~ 306 (450)
T 2y4t_A 230 SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDG---RYTDATSKYESVMKTEPSIAEYTVRSKERICHCFS 306 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 9999999999999998887666 88999999 99999999999999999874 47888999999
Q ss_pred HhhhhhhhhhhhHHHHHHH--hHHHHHHHHHHHHhhhcchHHHHHHHhhccC
Q psy12642 151 QVLTSAKCSAAKKKEISKQ--MMWVSKHLARQYEEQQGNTETLTELMSALQV 200 (201)
Q Consensus 151 ~~~~~~~a~~~~~~~~~~~--~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~ 200 (201)
..|++++|.....+..... ...+...+...|......+.++..+-+++.+
T Consensus 307 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 307 KDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 9999999977655544221 2244445666676666666666666655543
No 44
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.87 E-value=2.9e-20 Score=139.72 Aligned_cols=192 Identities=14% Similarity=0.095 Sum_probs=148.5
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD 83 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 83 (201)
+..+..++..|++++|+..++++++.+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|+
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~ 104 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 104 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCC
Confidence 45667788899999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHhhc-------------------------------------------------CCCCHHHHHHHHHHHHH
Q psy12642 84 YAKAVFCMEELFLH-------------------------------------------------HPHNHLLHQRYADILYT 114 (201)
Q Consensus 84 ~~~A~~~~~~al~~-------------------------------------------------~~~~~~~~~~la~~~~~ 114 (201)
+++|+..+++++.. .|.++.++..+|.++..
T Consensus 105 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 184 (327)
T 3cv0_A 105 ANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNL 184 (327)
T ss_dssp HHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 88887777666554 44556667777777777
Q ss_pred cCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH--hHHHHHHHHHHHHhhhcchHHHH
Q psy12642 115 QGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQ--MMWVSKHLARQYEEQQGNTETLT 192 (201)
Q Consensus 115 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~l~~~y~~~~~~~~~~~ 192 (201)
.| ++++|+..++++++.+|+++.++..++.++...|++++|.....+..... ...+...+...|......+.++.
T Consensus 185 ~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 261 (327)
T 3cv0_A 185 SN---NYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAK 261 (327)
T ss_dssp TT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hc---cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence 77 78888888888888888777788888888888888777766554443321 22344456666666666666655
Q ss_pred HHHhhc
Q psy12642 193 ELMSAL 198 (201)
Q Consensus 193 ~~~~~~ 198 (201)
.+.+++
T Consensus 262 ~~~~a~ 267 (327)
T 3cv0_A 262 QLVRAI 267 (327)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
No 45
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.86 E-value=9.1e-20 Score=147.91 Aligned_cols=193 Identities=16% Similarity=0.102 Sum_probs=167.3
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD 83 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 83 (201)
...+..+...|++++|+..|+++++.+|.+..++..++.++...|++++|+..+++++...|++..++..+|.+|...|+
T Consensus 377 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 456 (597)
T 2xpi_A 377 LAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGN 456 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCC
Confidence 34566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcC------Cccc-HHHHHHHHHHHHHhhhhh
Q psy12642 84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL------NEKN-IRALYGLALSCHQVLTSA 156 (201)
Q Consensus 84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~------~p~~-~~~~~~l~~~~~~~~~~~ 156 (201)
+++|+..|++++...|.++..+..+|.++...| ++++|++.|+++++. +|++ ..++..++.++...|+.+
T Consensus 457 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 533 (597)
T 2xpi_A 457 ILLANEYLQSSYALFQYDPLLLNELGVVAFNKS---DMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYD 533 (597)
T ss_dssp HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC---CHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHH
Confidence 999999999999999999999999999999999 999999999999988 6664 789999999999999999
Q ss_pred hhhhhhHHHHHHH--hHHHHHHHHHHHHhhhcchHHHHHHHhhcc
Q psy12642 157 KCSAAKKKEISKQ--MMWVSKHLARQYEEQQGNTETLTELMSALQ 199 (201)
Q Consensus 157 ~a~~~~~~~~~~~--~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~ 199 (201)
+|....++..... ...+...+...|......+++...+.+++.
T Consensus 534 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 534 AAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 9977655544321 234555677778877777776666665554
No 46
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.86 E-value=4.5e-21 Score=128.62 Aligned_cols=131 Identities=15% Similarity=-0.039 Sum_probs=118.0
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q psy12642 21 EHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPH 100 (201)
Q Consensus 21 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 100 (201)
..|++++..+|++...++.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+.+|++++..+|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 46788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhh
Q psy12642 101 NHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT 154 (201)
Q Consensus 101 ~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 154 (201)
++.+++.+|.++...| ++++|+.+|+++++++|+++........+...++.
T Consensus 85 ~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~ 135 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLG---DLDGAESGFYSARALAAAQPAHEALAARAGAMLEA 135 (142)
T ss_dssp CTHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH
Confidence 9999999999999999 99999999999999999887665555555554443
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.86 E-value=6e-20 Score=130.97 Aligned_cols=154 Identities=11% Similarity=-0.009 Sum_probs=144.5
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHh
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAK-NKIPEAIKELTEYLK--KFMTDQETWQELCDLYLS 80 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~ 80 (201)
...+..+...|++++|+..+++++..+|.+..++..+|.++... |++++|+..+++++. ..|.+..++..+|.++..
T Consensus 46 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 125 (225)
T 2vq2_A 46 LVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAK 125 (225)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHH
Confidence 34566788899999999999999999999999999999999999 999999999999999 667778999999999999
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHhhhhhhhh
Q psy12642 81 EGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNE-KNIRALYGLALSCHQVLTSAKCS 159 (201)
Q Consensus 81 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~a~ 159 (201)
.|++++|+..+++++...|.++.++..+|.++...| ++++|+..++++++..| +++..+..++.++...|+.+.+.
T Consensus 126 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 202 (225)
T 2vq2_A 126 QGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAG---QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAY 202 (225)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHH
Confidence 999999999999999999999999999999999999 99999999999999999 99999999999999999887774
Q ss_pred h
Q psy12642 160 A 160 (201)
Q Consensus 160 ~ 160 (201)
.
T Consensus 203 ~ 203 (225)
T 2vq2_A 203 E 203 (225)
T ss_dssp H
T ss_pred H
Confidence 3
No 48
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.86 E-value=6.2e-21 Score=157.84 Aligned_cols=150 Identities=15% Similarity=0.059 Sum_probs=142.2
Q ss_pred hhccCHHHHHHHHHHHH--------hcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q psy12642 11 FHFFRYEEALEHLETII--------KIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG 82 (201)
Q Consensus 11 ~~~~~~~~A~~~~~~~l--------~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 82 (201)
...|++++|++.+++++ +.+|++..++..+|.++...|++++|+..++++++.+|++..+|+.+|.++...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 67899999999999999 8899999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhh
Q psy12642 83 DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAK 162 (201)
Q Consensus 83 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 162 (201)
++++|+..|++++.++|+++.++..+|.++...| ++++ +..|+++++++|++..++++++.++...|++++|....
T Consensus 482 ~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g---~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 482 DYDSATKHFTEVLDTFPGELAPKLALAATAELAG---NTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHT---CCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC---ChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999999999999999 9999 99999999999999999999999999999999997755
Q ss_pred HH
Q psy12642 163 KK 164 (201)
Q Consensus 163 ~~ 164 (201)
.+
T Consensus 558 ~~ 559 (681)
T 2pzi_A 558 DE 559 (681)
T ss_dssp HT
T ss_pred Hh
Confidence 43
No 49
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.86 E-value=2.1e-20 Score=123.01 Aligned_cols=107 Identities=14% Similarity=0.130 Sum_probs=103.2
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYA 85 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 85 (201)
.+..+++.|+|++|+..|+++++.+|.++.++..+|.++..+|++++|+..++++++++|+++.+|+.+|.++..+|+++
T Consensus 19 ~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 98 (126)
T 4gco_A 19 KGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWS 98 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHH
Q psy12642 86 KAVFCMEELFLHHPHNHLLHQRYADIL 112 (201)
Q Consensus 86 ~A~~~~~~al~~~~~~~~~~~~la~~~ 112 (201)
+|+..|+++++++|+++.++..++.++
T Consensus 99 ~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 99 KAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 999999999999999999999998764
No 50
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.86 E-value=3.2e-20 Score=139.51 Aligned_cols=152 Identities=11% Similarity=0.032 Sum_probs=146.0
Q ss_pred hhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHH
Q psy12642 9 GCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAV 88 (201)
Q Consensus 9 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~ 88 (201)
.+...|++++|+..++++++.+|.++.++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+
T Consensus 147 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 226 (327)
T 3cv0_A 147 FFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEAL 226 (327)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 37788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc------------cHHHHHHHHHHHHHhhhhh
Q psy12642 89 FCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK------------NIRALYGLALSCHQVLTSA 156 (201)
Q Consensus 89 ~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~l~~~~~~~~~~~ 156 (201)
..+++++...|+++.++..+|.++...| ++++|+..|++++...|+ ++.++..++.++...|+.+
T Consensus 227 ~~~~~a~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 303 (327)
T 3cv0_A 227 DAYNRALDINPGYVRVMYNMAVSYSNMS---QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPD 303 (327)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHH
Confidence 9999999999999999999999999999 999999999999999999 8999999999999999999
Q ss_pred hhhhhhH
Q psy12642 157 KCSAAKK 163 (201)
Q Consensus 157 ~a~~~~~ 163 (201)
+|.....
T Consensus 304 ~A~~~~~ 310 (327)
T 3cv0_A 304 LVELTYA 310 (327)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 9965444
No 51
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.86 E-value=1.4e-19 Score=133.07 Aligned_cols=150 Identities=15% Similarity=0.107 Sum_probs=121.9
Q ss_pred hhhhccCHHHHHHHHHHHHhc----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Q psy12642 9 GCFHFFRYEEALEHLETIIKI----DETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDY 84 (201)
Q Consensus 9 ~~~~~~~~~~A~~~~~~~l~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 84 (201)
.+...|++++|+..|+++++. +|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH
Confidence 355678888888888888886 3567788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhh
Q psy12642 85 AKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAK 162 (201)
Q Consensus 85 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 162 (201)
++|+.+|++++..+|.++.++..+|.++...| ++++|+..|+++++.+|+++.....++.+ ...|+.++|....
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~ 167 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGG---RDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVL 167 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHhc---cHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHH
Confidence 88888888888888888888888888888888 88888888888888888877655555444 4557776665433
No 52
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.86 E-value=7.4e-20 Score=130.37 Aligned_cols=123 Identities=17% Similarity=0.150 Sum_probs=116.3
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH----------------HHHHHHhcCCHHHHHHHHHHHhh
Q psy12642 33 NTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQE----------------LCDLYLSEGDYAKAVFCMEELFL 96 (201)
Q Consensus 33 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~----------------l~~~~~~~~~~~~A~~~~~~al~ 96 (201)
++..+...|..+...|++++|+..|++++..+|+++.+++. +|.++...|++++|+..|++++.
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 46677889999999999999999999999999999999999 99999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhh
Q psy12642 97 HHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKC 158 (201)
Q Consensus 97 ~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a 158 (201)
.+|+++.++..+|.++...| ++++|+..|+++++++|+++.+++++|.+|...|+...+
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~ 141 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRG---QEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKK 141 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999 999999999999999999999999999999887765433
No 53
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.85 E-value=4.9e-21 Score=158.48 Aligned_cols=147 Identities=10% Similarity=-0.047 Sum_probs=138.9
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD 83 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 83 (201)
+..+..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++..+|+
T Consensus 437 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~ 516 (681)
T 2pzi_A 437 LMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGN 516 (681)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Confidence 44567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhh
Q psy12642 84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT 154 (201)
Q Consensus 84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 154 (201)
+++ +..|++++..+|+++.+++.+|.++...| ++++|+..|+++++++|++..++++++.++...++
T Consensus 517 ~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 517 TDE-HKFYQTVWSTNDGVISAAFGLARARSAEG---DRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp CCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred hHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcC---CHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999 99999999999999999999999999999 99999999999999999999999999999876554
No 54
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.85 E-value=3e-20 Score=150.74 Aligned_cols=150 Identities=13% Similarity=-0.018 Sum_probs=125.1
Q ss_pred ccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12642 13 FFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCME 92 (201)
Q Consensus 13 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 92 (201)
.|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|+++.++..+|.++..+|++++|+.+++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHh---hhhhhhhhhhHHH
Q psy12642 93 ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQV---LTSAKCSAAKKKE 165 (201)
Q Consensus 93 ~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~ 165 (201)
+++..+|+++.++..+|.++...| ++++|+..|+++++.+|+++.++..++.++... |+.++|.....+.
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAG---QAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 999999999999999999999999 999999999999999999999999999999999 9888886655443
No 55
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.85 E-value=2.6e-20 Score=139.07 Aligned_cols=159 Identities=12% Similarity=0.004 Sum_probs=138.9
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD 83 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 83 (201)
+..+..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|+........+..+...++
T Consensus 121 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~ 200 (287)
T 3qou_A 121 AQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAA 200 (287)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcc
Confidence 34556678889999999999999999999999999999999999999999999999999999766666667777888888
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCccc--HHHHHHHHHHHHHhhhhhhhhhh
Q psy12642 84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN--IRALYGLALSCHQVLTSAKCSAA 161 (201)
Q Consensus 84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~a~~~ 161 (201)
.++|+..+++++..+|+++.+++.+|.++...| ++++|+..|.++++.+|++ ..++..++.++...|+.+++...
T Consensus 201 ~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g---~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~ 277 (287)
T 3qou_A 201 DTPEIQQLQQQVAENPEDAALATQLALQLHQVG---RNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASX 277 (287)
T ss_dssp SCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cCccHHHHHHHHhcCCccHHHHHHHHHHHHHcc---cHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHH
Confidence 899999999999999999999999999999999 9999999999999999987 88999999999999988888655
Q ss_pred hHHH
Q psy12642 162 KKKE 165 (201)
Q Consensus 162 ~~~~ 165 (201)
..+.
T Consensus 278 ~r~a 281 (287)
T 3qou_A 278 YRRQ 281 (287)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 56
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.85 E-value=6.8e-21 Score=145.30 Aligned_cols=146 Identities=14% Similarity=0.114 Sum_probs=139.6
Q ss_pred hccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---------------HHHHHHHHH
Q psy12642 12 HFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD---------------QETWQELCD 76 (201)
Q Consensus 12 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~l~~ 76 (201)
..+++++|+..+++++..+|.++.++..+|.++...|++++|+..|++++...|++ ..++..+|.
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 45678888889999998999999999999999999999999999999999999999 689999999
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhh
Q psy12642 77 LYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSA 156 (201)
Q Consensus 77 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 156 (201)
++..+|++++|+.+|++++.++|+++.+++.+|.++...| ++++|+..|+++++++|++..++..++.++...|+..
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~ 281 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVN---DFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQL 281 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 9999999999999999999999999999999999998
Q ss_pred hhhh
Q psy12642 157 KCSA 160 (201)
Q Consensus 157 ~a~~ 160 (201)
++..
T Consensus 282 ~a~~ 285 (336)
T 1p5q_A 282 AREK 285 (336)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8844
No 57
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.85 E-value=1.7e-19 Score=135.01 Aligned_cols=142 Identities=17% Similarity=0.087 Sum_probs=69.3
Q ss_pred HhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH--HHHHhcCCHH
Q psy12642 8 IGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELC--DLYLSEGDYA 85 (201)
Q Consensus 8 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~--~~~~~~~~~~ 85 (201)
..+...|++++|+..+++ |.++.++..+|.++..+|++++|+..++++++.+|++.......+ .++...|+++
T Consensus 109 ~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~ 183 (291)
T 3mkr_A 109 SIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQ 183 (291)
T ss_dssp HHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHH
T ss_pred HHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHH
Confidence 334444444444444444 444444445555555555555555555555555554432222211 2222334555
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhh
Q psy12642 86 KAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAK 157 (201)
Q Consensus 86 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 157 (201)
+|+..|++++..+|+++.++..+|.++...| ++++|+..|+++++.+|+++.++.+++.++...|+..+
T Consensus 184 eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~e 252 (291)
T 3mkr_A 184 DAYYIFQEMADKCSPTLLLLNGQAACHMAQG---RWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPE 252 (291)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHH
Confidence 5555555555555555555555555555555 55555555555555555555555555555555555443
No 58
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.85 E-value=9.9e-20 Score=133.84 Aligned_cols=192 Identities=8% Similarity=-0.100 Sum_probs=162.6
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD 83 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 83 (201)
...+..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|+
T Consensus 47 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 126 (275)
T 1xnf_A 47 YERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR 126 (275)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhcc
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhH
Q psy12642 84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKK 163 (201)
Q Consensus 84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 163 (201)
+++|+.+|++++..+|+++......+.+ ...| ++++|+..+.+++...|++...+ .++.++...++..+|.....
T Consensus 127 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~---~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~ 201 (275)
T 1xnf_A 127 DKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKL---DEKQAKEVLKQHFEKSDKEQWGW-NIVEFYLGNISEQTLMERLK 201 (275)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHH---CHHHHHHHHHHHHHHSCCCSTHH-HHHHHHTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhc---CHHHHHHHHHHHHhcCCcchHHH-HHHHHHHHhcCHHHHHHHHH
Confidence 9999999999999999998777666654 5668 89999999999999999876654 46777777777777755444
Q ss_pred HHHHHHh------HHHHHHHHHHHHhhhcchHHHHHHHhhccC
Q psy12642 164 KEISKQM------MWVSKHLARQYEEQQGNTETLTELMSALQV 200 (201)
Q Consensus 164 ~~~~~~~------~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~ 200 (201)
+...... ..+...+...|......++++..+.+++.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 202 ADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 4332211 355566788888888888898888888765
No 59
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.85 E-value=1.5e-19 Score=144.64 Aligned_cols=153 Identities=15% Similarity=-0.019 Sum_probs=104.2
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYA 85 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 85 (201)
.+..+...|++++|+..+++++..+|. +.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|+++
T Consensus 249 ~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 327 (537)
T 3fp2_A 249 TGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYK 327 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHH
Confidence 334455666677777777777766666 6666666666666677777777777776666666666666777777777777
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhh
Q psy12642 86 KAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAK 162 (201)
Q Consensus 86 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 162 (201)
+|+..|++++..+|.++.++..+|.++...| ++++|+..|+++++.+|+++.++..++.++...|++++|....
T Consensus 328 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 401 (537)
T 3fp2_A 328 NAKEDFQKAQSLNPENVYPYIQLACLLYKQG---KFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQY 401 (537)
T ss_dssp HHHHHHHHHHHHCTTCSHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 7777777777666666666666777766666 6777777777777666666666666677776666666665433
No 60
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.85 E-value=1.9e-19 Score=144.13 Aligned_cols=156 Identities=14% Similarity=0.137 Sum_probs=143.7
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD 83 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 83 (201)
+..+..+...|++++|+..++++++.+|.++.++..+|.++...|++++|+..+++++...|+++.++..+|.++...|+
T Consensus 280 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 359 (537)
T 3fp2_A 280 IFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGK 359 (537)
T ss_dssp HHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 44567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHH------HHHHHHHHHHHh-----
Q psy12642 84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIR------ALYGLALSCHQV----- 152 (201)
Q Consensus 84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~----- 152 (201)
+++|+..+++++..+|+++.++..+|.++...| ++++|+..|+++++..|++.. .+..++.++...
T Consensus 360 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 436 (537)
T 3fp2_A 360 FTESEAFFNETKLKFPTLPEVPTFFAEILTDRG---DFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDP 436 (537)
T ss_dssp HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC---CHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999999 999999999999999887553 356677888888
Q ss_pred -----hhhhhhhhhh
Q psy12642 153 -----LTSAKCSAAK 162 (201)
Q Consensus 153 -----~~~~~a~~~~ 162 (201)
|++++|....
T Consensus 437 ~~~~~~~~~~A~~~~ 451 (537)
T 3fp2_A 437 TQLDEEKFNAAIKLL 451 (537)
T ss_dssp --CCHHHHHHHHHHH
T ss_pred hhhhHhHHHHHHHHH
Confidence 8888884433
No 61
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.84 E-value=5.2e-20 Score=146.41 Aligned_cols=189 Identities=13% Similarity=-0.041 Sum_probs=155.3
Q ss_pred HHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Q psy12642 5 VYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDY 84 (201)
Q Consensus 5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 84 (201)
..+..+...|++++|+..++++++.+|. +.++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCH
Confidence 3556678889999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHH
Q psy12642 85 AKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKK 164 (201)
Q Consensus 85 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 164 (201)
++|+..+++++..+|.++.++..+|.++...| ++++|+..|+++++..|+++.++..++.++...|++++|.....+
T Consensus 321 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPENIFPYIQLACLAYREN---KFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp THHHHHHHHHHHTCSSCSHHHHHHHHHTTTTT---CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999 999999999999999999999999999999999999998775554
Q ss_pred HHHHHhHH--------HHHHHHHHHHh---hhcchHHHHHHHhh
Q psy12642 165 EISKQMMW--------VSKHLARQYEE---QQGNTETLTELMSA 197 (201)
Q Consensus 165 ~~~~~~~~--------~~~~l~~~y~~---~~~~~~~~~~~~~~ 197 (201)
........ +...+...|.. ....+.++..+.++
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a 441 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKA 441 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHH
Confidence 43322211 34445555555 44444444444433
No 62
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.84 E-value=1.7e-19 Score=118.17 Aligned_cols=118 Identities=13% Similarity=0.022 Sum_probs=110.9
Q ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q psy12642 31 ETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYAD 110 (201)
Q Consensus 31 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 110 (201)
|..+..+..+|..+...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..+++++.++|+++.+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCcccHHHHHHHHHHHHcCC------cccHHHHHHHHHHHHH
Q psy12642 111 ILYTQGGLENIELAISHYLMAINLN------EKNIRALYGLALSCHQ 151 (201)
Q Consensus 111 ~~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~ 151 (201)
++...| ++++|+..|+++++++ |++..++..+..+...
T Consensus 81 ~~~~~~---~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 81 AQIAVK---EYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHh---CHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 999999 9999999999999999 8888888888887664
No 63
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.84 E-value=5.2e-20 Score=127.56 Aligned_cols=131 Identities=15% Similarity=0.109 Sum_probs=120.5
Q ss_pred hhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH-HHhcCCH--H
Q psy12642 9 GCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDL-YLSEGDY--A 85 (201)
Q Consensus 9 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~~~~--~ 85 (201)
.+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.+ +...|++ +
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp CCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 466789999999999999999999999999999999999999999999999999999999999999999 8899999 9
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHH
Q psy12642 86 KAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRAL 142 (201)
Q Consensus 86 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 142 (201)
+|+.++++++..+|+++.+++.+|.++...| ++++|+..|+++++.+|+++...
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQA---NYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcc---cHHHHHHHHHHHHhhCCCCccHH
Confidence 9999999999999999999999999999999 99999999999999999875443
No 64
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.84 E-value=1.6e-19 Score=132.64 Aligned_cols=153 Identities=12% Similarity=0.070 Sum_probs=137.1
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhcCCCHHHH-
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDET---NTAARKRKICILKA--------KNKIPEAIKELTEYLKKFMTDQETW- 71 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~---~~~~~~~~a~~~~~--------~~~~~~A~~~~~~~~~~~p~~~~~~- 71 (201)
+..+..++..|++++|+..|+++++..|+ .+.+++.+|.++.. .|++++|+..|++++..+|+++.++
T Consensus 56 ~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 135 (261)
T 3qky_A 56 FYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDD 135 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHH
Confidence 44667789999999999999999999874 46889999999999 9999999999999999999986655
Q ss_pred ----------------HHHHHHHHhcCCHHHHHHHHHHHhhcCCC---CHHHHHHHHHHHHHc----------CCcccHH
Q psy12642 72 ----------------QELCDLYLSEGDYAKAVFCMEELFLHHPH---NHLLHQRYADILYTQ----------GGLENIE 122 (201)
Q Consensus 72 ----------------~~l~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~----------~~~~~~~ 122 (201)
+.+|.+|...|++++|+..|++++...|+ .+.+++.+|.++... | +++
T Consensus 136 a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~---~~~ 212 (261)
T 3qky_A 136 ATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPE---RYR 212 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHH---HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccc---hHH
Confidence 78899999999999999999999999998 467899999999977 7 999
Q ss_pred HHHHHHHHHHcCCcccH---HHHHHHHHHHHHhhhhhhhh
Q psy12642 123 LAISHYLMAINLNEKNI---RALYGLALSCHQVLTSAKCS 159 (201)
Q Consensus 123 ~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~a~ 159 (201)
+|+..|+++++..|+++ .+...++.++..+++.+++.
T Consensus 213 ~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 213 RAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999884 57778888888888887663
No 65
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.84 E-value=6e-19 Score=115.68 Aligned_cols=132 Identities=20% Similarity=0.268 Sum_probs=121.7
Q ss_pred hHHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q psy12642 3 PIVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG 82 (201)
Q Consensus 3 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 82 (201)
....+..+...|++++|+..++++++.+|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc
Confidence 34456778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc
Q psy12642 83 DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK 137 (201)
Q Consensus 83 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 137 (201)
++++|+..+++++...|.++..+..+|.++...| ++++|+.++++++..+|+
T Consensus 84 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 84 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG---DYDEAIEYYQKALELDPR 135 (136)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHc---cHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999999999999 999999999999988876
No 66
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.83 E-value=1.6e-19 Score=122.27 Aligned_cols=114 Identities=11% Similarity=0.092 Sum_probs=107.6
Q ss_pred hHHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q psy12642 3 PIVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG 82 (201)
Q Consensus 3 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 82 (201)
.+.++..|+..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.+|...|
T Consensus 34 ~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 113 (150)
T 4ga2_A 34 GFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKND 113 (150)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 45567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHH-HHHHhhcCCCCHHHHHHHHHHHHHcC
Q psy12642 83 DYAKAVFC-MEELFLHHPHNHLLHQRYADILYTQG 116 (201)
Q Consensus 83 ~~~~A~~~-~~~al~~~~~~~~~~~~la~~~~~~~ 116 (201)
++++|... ++++++++|+++.++..++.++...|
T Consensus 114 ~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 114 VTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp SSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred ChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 99887765 59999999999999999999988877
No 67
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.1e-19 Score=144.56 Aligned_cols=151 Identities=16% Similarity=0.119 Sum_probs=77.5
Q ss_pred HHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHH
Q psy12642 7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAK 86 (201)
Q Consensus 7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 86 (201)
+..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++
T Consensus 277 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 356 (514)
T 2gw1_A 277 ALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDD 356 (514)
T ss_dssp HHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHH
Confidence 33444455555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHH------HHHHHHHHHHH---hhhhhh
Q psy12642 87 AVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIR------ALYGLALSCHQ---VLTSAK 157 (201)
Q Consensus 87 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~---~~~~~~ 157 (201)
|+..+++++...|.++.++..+|.++...| ++++|+..|++++...|+++. ++..++.++.. .|++++
T Consensus 357 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 433 (514)
T 2gw1_A 357 CETLFSEAKRKFPEAPEVPNFFAEILTDKN---DFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIE 433 (514)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHH
T ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHH
Confidence 555555555555555555555555555555 555555555555555444432 45555555555 555555
Q ss_pred hhh
Q psy12642 158 CSA 160 (201)
Q Consensus 158 a~~ 160 (201)
|..
T Consensus 434 A~~ 436 (514)
T 2gw1_A 434 ATN 436 (514)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.83 E-value=6.1e-19 Score=131.59 Aligned_cols=160 Identities=17% Similarity=0.094 Sum_probs=142.2
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHh--------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--------CCC
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIK--------IDETNTAARKRKICILKAKNKIPEAIKELTEYLKKF--------MTD 67 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~--------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------p~~ 67 (201)
...+..+...|++++|+..++++++ ..|....++..+|.++...|++++|+..+++++... |..
T Consensus 31 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 110 (311)
T 3nf1_A 31 HNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAV 110 (311)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHH
Confidence 3456778899999999999999999 478888999999999999999999999999999873 445
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC--------CCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcC-----
Q psy12642 68 QETWQELCDLYLSEGDYAKAVFCMEELFLHH--------PHNHLLHQRYADILYTQGGLENIELAISHYLMAINL----- 134 (201)
Q Consensus 68 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~----- 134 (201)
..++..+|.++...|++++|+.++++++... |....++..+|.++...| ++++|+.+|++++..
T Consensus 111 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 111 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQG---KYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHh
Confidence 7789999999999999999999999999874 455678999999999999 999999999999998
Q ss_pred ---CcccHHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q psy12642 135 ---NEKNIRALYGLALSCHQVLTSAKCSAAKKKEI 166 (201)
Q Consensus 135 ---~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 166 (201)
.|....++..++.++...|++++|.....+..
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 78888899999999999999999977554443
No 69
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.83 E-value=9.8e-18 Score=123.69 Aligned_cols=183 Identities=12% Similarity=0.001 Sum_probs=134.6
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKA----KNKIPEAIKELTEYLKKFMTDQETWQELCDLYL 79 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 79 (201)
+..+..+...|++++|+.+|+++++ |.++.++..+|.++.. .+++++|+..++++++.. ++.++..+|.+|.
T Consensus 10 ~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~ 85 (273)
T 1ouv_A 10 VGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYY 85 (273)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHh
Confidence 3455667778888888888888887 6677888888888888 888888888888888764 7788888888888
Q ss_pred h----cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH----cCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH
Q psy12642 80 S----EGDYAKAVFCMEELFLHHPHNHLLHQRYADILYT----QGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 151 (201)
Q Consensus 80 ~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 151 (201)
. .+++++|+.+|++++.. +++.++..+|.++.. .+ ++++|+.+|+++++.+ ++.++..++.++..
T Consensus 86 ~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~---~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~ 158 (273)
T 1ouv_A 86 SGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTR---DFKKAVEYFTKACDLN--DGDGCTILGSLYDA 158 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCC---CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred CCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCccc---CHHHHHHHHHHHHhcC--cHHHHHHHHHHHHc
Confidence 8 88888888888888876 377888888888887 77 8888888888888765 46677888888887
Q ss_pred ----hhhhhhhhhhhHHHHHHHhHHHHHHHHHHHHh----hhcchHHHHHHHhh
Q psy12642 152 ----VLTSAKCSAAKKKEISKQMMWVSKHLARQYEE----QQGNTETLTELMSA 197 (201)
Q Consensus 152 ----~~~~~~a~~~~~~~~~~~~~~~~~~l~~~y~~----~~~~~~~~~~~~~~ 197 (201)
.++.++|....++....-...+...+...|.. ....++++..+.++
T Consensus 159 ~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a 212 (273)
T 1ouv_A 159 GRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKA 212 (273)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHH
Confidence 77777776655555433333444455555655 44444454444443
No 70
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.83 E-value=5.8e-18 Score=126.61 Aligned_cols=153 Identities=12% Similarity=0.013 Sum_probs=135.4
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKI--DETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD 83 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 83 (201)
++..+...+++++|++.+++++.. +|+++.+++.+|.++...|++++|+..+++ |+++.++..+|.++..+|+
T Consensus 71 la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~ 145 (291)
T 3mkr_A 71 FAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDR 145 (291)
T ss_dssp HHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCC
Confidence 455677788999999999999876 599999999999999999999999999988 8999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHH--HHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhh
Q psy12642 84 YAKAVFCMEELFLHHPHNHLLHQRYA--DILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAA 161 (201)
Q Consensus 84 ~~~A~~~~~~al~~~~~~~~~~~~la--~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 161 (201)
+++|+..|++++..+|++.......+ .++...| ++++|+..|+++++.+|+++.++++++.++...|++++|...
T Consensus 146 ~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~---~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 222 (291)
T 3mkr_A 146 LDLARKELKKMQDQDEDATLTQLATAWVSLAAGGE---KLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGV 222 (291)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTT---HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCch---HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999875544433 3333457 999999999999999999999999999999999999999776
Q ss_pred hHHHH
Q psy12642 162 KKKEI 166 (201)
Q Consensus 162 ~~~~~ 166 (201)
..+..
T Consensus 223 l~~al 227 (291)
T 3mkr_A 223 LQEAL 227 (291)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
No 71
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.83 E-value=6.2e-19 Score=131.82 Aligned_cols=155 Identities=14% Similarity=0.049 Sum_probs=134.9
Q ss_pred HhhhhccCHHHHHHHHHHHHhcCc------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHH
Q psy12642 8 IGCFHFFRYEEALEHLETIIKIDE------TNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD------QETWQELC 75 (201)
Q Consensus 8 ~~~~~~~~~~~A~~~~~~~l~~~~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~ 75 (201)
..+...|++++|+..|+++++..+ ....++..+|.++...|++++|+..+++++.+.|.. ..++..+|
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 346678999999999999998743 235789999999999999999999999999987654 45888999
Q ss_pred HHHHhc-CCHHHHHHHHHHHhhcCCCC------HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHH-------H
Q psy12642 76 DLYLSE-GDYAKAVFCMEELFLHHPHN------HLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIR-------A 141 (201)
Q Consensus 76 ~~~~~~-~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~ 141 (201)
.+|... |++++|+.+|++++.+.|.+ ..++..+|.++...| ++++|+.+|++++++.|++.. +
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 201 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG---QYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 999996 99999999999999988754 457889999999999 999999999999999987543 6
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHH
Q psy12642 142 LYGLALSCHQVLTSAKCSAAKKKE 165 (201)
Q Consensus 142 ~~~l~~~~~~~~~~~~a~~~~~~~ 165 (201)
+.+++.|+..+|++.+|.....+.
T Consensus 202 ~~~lg~~~~~~g~~~~A~~~~~~a 225 (292)
T 1qqe_A 202 FLKKGLCQLAATDAVAAARTLQEG 225 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 789999999999999997766554
No 72
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.82 E-value=8.2e-19 Score=114.61 Aligned_cols=125 Identities=15% Similarity=0.071 Sum_probs=119.1
Q ss_pred hcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHH
Q psy12642 28 KIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQR 107 (201)
Q Consensus 28 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 107 (201)
+.+|.++.++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+.++++++..+|+++.++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 85 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR 85 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence 34577889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhh
Q psy12642 108 YADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTS 155 (201)
Q Consensus 108 la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 155 (201)
+|.++...| ++++|+.+|+++++.+|+++.++..++.++...|++
T Consensus 86 ~~~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 86 MGLALSSLN---KHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhC---CHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999 999999999999999999999999999999998875
No 73
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.82 E-value=9e-19 Score=128.77 Aligned_cols=152 Identities=16% Similarity=0.082 Sum_probs=130.0
Q ss_pred hhccCHHHHHHHHHHHHh--------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--------CCCHHHHHHH
Q psy12642 11 FHFFRYEEALEHLETIIK--------IDETNTAARKRKICILKAKNKIPEAIKELTEYLKKF--------MTDQETWQEL 74 (201)
Q Consensus 11 ~~~~~~~~A~~~~~~~l~--------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~l 74 (201)
...|++++|+..|+++++ .+|..+.++..+|.++...|++++|+..+++++... |....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 446777788888888877 347778899999999999999999999999999874 4556788999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcC--------Cccc
Q psy12642 75 CDLYLSEGDYAKAVFCMEELFLH--------HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL--------NEKN 138 (201)
Q Consensus 75 ~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~ 138 (201)
|.++...|++++|+.++++++.. +|....++..+|.++...| ++++|+.+|+++++. .|..
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~ 168 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQG---KAEEVEYYYRRALEIYATRLGPDDPNV 168 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 99999999999999999999987 4666778999999999999 999999999999998 7888
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhHHH
Q psy12642 139 IRALYGLALSCHQVLTSAKCSAAKKKE 165 (201)
Q Consensus 139 ~~~~~~l~~~~~~~~~~~~a~~~~~~~ 165 (201)
..++..++.++...|++++|.....+.
T Consensus 169 ~~~~~~la~~~~~~g~~~~A~~~~~~~ 195 (283)
T 3edt_B 169 AKTKNNLASCYLKQGKYQDAETLYKEI 195 (283)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 889999999999999999997655433
No 74
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.82 E-value=1.4e-18 Score=120.08 Aligned_cols=134 Identities=16% Similarity=0.038 Sum_probs=127.4
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD 83 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 83 (201)
...+..+...|++++|+..++++++.+|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|+
T Consensus 46 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 125 (186)
T 3as5_A 46 LHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGR 125 (186)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCc
Confidence 34566788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHH
Q psy12642 84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIR 140 (201)
Q Consensus 84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 140 (201)
+++|+.++++++...|.++.++..+|.++...| ++++|+.+++++++.+|++..
T Consensus 126 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 126 FDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMG---RHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHCCCG
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCchh
Confidence 999999999999999999999999999999999 999999999999999887643
No 75
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=3.2e-18 Score=128.83 Aligned_cols=148 Identities=8% Similarity=-0.013 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHh-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12642 17 EEALEHLETIIK-IDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQE-TWQELCDLYLSEGDYAKAVFCMEEL 94 (201)
Q Consensus 17 ~~A~~~~~~~l~-~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~~~~~~A~~~~~~a 94 (201)
++|+..|+++++ .+|++..+|..+|.++...|++++|...|+++++..|.++. +|..+|.++.+.|++++|+..|+++
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999999999999 69999999999999999999999999999999999999987 9999999999999999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHH-cCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHH
Q psy12642 95 FLHHPHNHLLHQRYADILYT-QGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEIS 167 (201)
Q Consensus 95 l~~~~~~~~~~~~la~~~~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 167 (201)
+...|.+..++...+..... .| ++++|+..|+++++.+|+++..|..++.++...|+.++|.....+...
T Consensus 161 ~~~~p~~~~~~~~~a~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 231 (308)
T 2ond_A 161 REDARTRHHVYVTAALMEYYCSK---DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp HTSTTCCTHHHHHHHHHHHHTSC---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999988888777666443 68 999999999999999999999999999999999999999776655544
No 76
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.82 E-value=9.1e-20 Score=128.72 Aligned_cols=149 Identities=18% Similarity=0.114 Sum_probs=130.5
Q ss_pred HhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH----------------HHH
Q psy12642 8 IGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ----------------ETW 71 (201)
Q Consensus 8 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~----------------~~~ 71 (201)
......|+++++.+.++......+.....+..+|..+...|++++|+..|.+++...|.++ .++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp ----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 3445568888888888877777778889999999999999999999999999999999887 899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH
Q psy12642 72 QELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 151 (201)
Q Consensus 72 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 151 (201)
..+|.++...|++++|+.++++++..+|.++.+++.+|.++...| ++++|+..|+++++++|+++.++..++.++..
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFG---FLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred hhhhhhhh
Q psy12642 152 VLTSAKCS 159 (201)
Q Consensus 152 ~~~~~~a~ 159 (201)
.++..++.
T Consensus 169 ~~~~~~~~ 176 (198)
T 2fbn_A 169 LKEARKKD 176 (198)
T ss_dssp HHHHHC--
T ss_pred HHHHHHHH
Confidence 99887774
No 77
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.82 E-value=1e-18 Score=114.79 Aligned_cols=123 Identities=20% Similarity=0.123 Sum_probs=117.6
Q ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHH
Q psy12642 29 IDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRY 108 (201)
Q Consensus 29 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 108 (201)
..|.++..+..+|.++...|++++|+..+++++...|++..++..+|.++...|++++|+.++++++..+|.++.++..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 34778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhh
Q psy12642 109 ADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT 154 (201)
Q Consensus 109 a~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 154 (201)
|.++...| ++++|+.+|+++++.+|++..++..++.++...|+
T Consensus 91 a~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 91 AAALEAMK---DYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHh---hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 99999999 99999999999999999999999999999988764
No 78
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.82 E-value=7.2e-19 Score=120.49 Aligned_cols=124 Identities=14% Similarity=0.048 Sum_probs=112.6
Q ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHH
Q psy12642 29 IDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRY 108 (201)
Q Consensus 29 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 108 (201)
.++.++..+..+|.++...|++++|+..|++++..+|+++.+|..+|.+|...|++++|+.+|++++.++|+++.+++.+
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 85 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRL 85 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHH--HHHHHHHhhhh
Q psy12642 109 ADILYTQGGLENIELAISHYLMAINLNEKNIRALYG--LALSCHQVLTS 155 (201)
Q Consensus 109 a~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--l~~~~~~~~~~ 155 (201)
|.++...| ++++|+.+|+++++++|++..+++. +..+..+.++.
T Consensus 86 g~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~ 131 (164)
T 3sz7_A 86 GLARFDMA---DYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEA 131 (164)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcc---CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999998875554 44445555544
No 79
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.82 E-value=5.6e-20 Score=145.66 Aligned_cols=147 Identities=17% Similarity=0.150 Sum_probs=135.2
Q ss_pred hccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---------------HHHHHHHHH
Q psy12642 12 HFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD---------------QETWQELCD 76 (201)
Q Consensus 12 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~l~~ 76 (201)
..+++++|+..++.++...|.....+..+|.+++..|++++|+..|++++...|.+ ..+|..+|.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888899999999999999999999999999999999999998 689999999
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhh
Q psy12642 77 LYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSA 156 (201)
Q Consensus 77 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 156 (201)
+|..+|++++|+.+|++++.++|+++.+++.+|.++...+ ++++|+..|+++++++|++..++..++.++..+++..
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g---~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~ 402 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMN---EFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHN 402 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 9999999999999999999999999999999999988
Q ss_pred hhhhh
Q psy12642 157 KCSAA 161 (201)
Q Consensus 157 ~a~~~ 161 (201)
++...
T Consensus 403 ~a~~~ 407 (457)
T 1kt0_A 403 ERDRR 407 (457)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87553
No 80
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.81 E-value=5.1e-20 Score=124.79 Aligned_cols=109 Identities=12% Similarity=0.045 Sum_probs=102.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcC
Q psy12642 55 KELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134 (201)
Q Consensus 55 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~ 134 (201)
..+++++..+|+++.+++.+|.+++..|++++|+..|++++..+|+++.+|..+|.++...| ++++|+..|++++++
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g---~~~~Ai~~~~~al~l 99 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKE---QFQQAADLYAVAFAL 99 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHH
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc---cHHHHHHHHHHHHhh
Confidence 44566778899999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred CcccHHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q psy12642 135 NEKNIRALYGLALSCHQVLTSAKCSAAKKKEI 166 (201)
Q Consensus 135 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 166 (201)
+|+++.+++++|.|+..+|++++|.....+..
T Consensus 100 ~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al 131 (151)
T 3gyz_A 100 GKNDYTPVFHTGQCQLRLKAPLKAKECFELVI 131 (151)
T ss_dssp SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999977665554
No 81
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.80 E-value=5.2e-18 Score=120.52 Aligned_cols=136 Identities=13% Similarity=0.087 Sum_probs=123.2
Q ss_pred HHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Q psy12642 5 VYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDY 84 (201)
Q Consensus 5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 84 (201)
..+..++..|++++|+..|++++ +| ++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccH
Confidence 34567888999999999999986 33 6789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCH----------------HHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHH
Q psy12642 85 AKAVFCMEELFLHHPHNH----------------LLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLA 146 (201)
Q Consensus 85 ~~A~~~~~~al~~~~~~~----------------~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 146 (201)
++|+..|++++...|.+. .+++.+|.++...| ++++|+..|+++++.+|++.......+
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~a 162 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKE---EWKKAEEQLALATSMKSEPRHSKIDKA 162 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTCCSGGGGHHHHH
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHcc---CHHHHHHHHHHHHHcCcccccchHHHH
Confidence 999999999999888776 89999999999999 999999999999999997654433333
No 82
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.80 E-value=3.7e-18 Score=113.03 Aligned_cols=125 Identities=13% Similarity=0.015 Sum_probs=114.4
Q ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHH
Q psy12642 29 IDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRY 108 (201)
Q Consensus 29 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 108 (201)
.+|.++..+..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.+++.+
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcccHHHHHHHHHHHHcCCcc-----cHHHHHHHHHHHHHhhhhh
Q psy12642 109 ADILYTQGGLENIELAISHYLMAINLNEK-----NIRALYGLALSCHQVLTSA 156 (201)
Q Consensus 109 a~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~~~~~ 156 (201)
|.++...| ++++|+..|+++++++|+ +......+..+........
T Consensus 84 ~~~~~~~~---~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~ 133 (137)
T 3q49_B 84 GQCQLEME---SYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSI 133 (137)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh---hHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 999999999999999998 6777777777766655433
No 83
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.80 E-value=7e-17 Score=119.11 Aligned_cols=183 Identities=9% Similarity=0.029 Sum_probs=154.8
Q ss_pred HHHHhhhh----ccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q psy12642 5 VYIIGCFH----FFRYEEALEHLETIIKIDETNTAARKRKICILKA----KNKIPEAIKELTEYLKKFMTDQETWQELCD 76 (201)
Q Consensus 5 ~~~~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 76 (201)
..+..+.. .+++++|+.+|+++++.+ ++.++..+|.++.. .+++++|+..+++++.. +++.++..+|.
T Consensus 43 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~ 118 (273)
T 1ouv_A 43 NLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGG 118 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred HHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHH
Confidence 34556777 899999999999999875 78999999999999 99999999999999986 48999999999
Q ss_pred HHHh----cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH----cCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHH
Q psy12642 77 LYLS----EGDYAKAVFCMEELFLHHPHNHLLHQRYADILYT----QGGLENIELAISHYLMAINLNEKNIRALYGLALS 148 (201)
Q Consensus 77 ~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 148 (201)
+|.. .+++++|+.+|++++... ++.++..+|.++.. .+ ++++|+.+|+++++.+ ++.+++.++.+
T Consensus 119 ~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~---~~~~A~~~~~~a~~~~--~~~a~~~lg~~ 191 (273)
T 1ouv_A 119 IYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPK---DLKKALASYDKACDLK--DSPGCFNAGNM 191 (273)
T ss_dssp HHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCC---CHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCC---CHHHHHHHHHHHHHCC--CHHHHHHHHHH
Confidence 9999 999999999999999876 68889999999998 88 9999999999999874 57889999999
Q ss_pred HHH----hhhhhhhhhhhHHHHHHHhHHHHHHHHHHHHh----hhcchHHHHHHHhhc
Q psy12642 149 CHQ----VLTSAKCSAAKKKEISKQMMWVSKHLARQYEE----QQGNTETLTELMSAL 198 (201)
Q Consensus 149 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~l~~~y~~----~~~~~~~~~~~~~~~ 198 (201)
|.. .+++++|....++....-...+...+...|.. ....++++..+.+++
T Consensus 192 ~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~ 249 (273)
T 1ouv_A 192 YHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGC 249 (273)
T ss_dssp HHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHH
T ss_pred HHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHH
Confidence 999 99999998877666554445666677777876 555555666555544
No 84
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.80 E-value=7.6e-18 Score=130.16 Aligned_cols=157 Identities=9% Similarity=-0.046 Sum_probs=136.4
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhc------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-------HHHHH
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKI------DETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD-------QETWQ 72 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~ 72 (201)
.+..++..|++++|+..|++++.. .+....++..+|.++...|++++|+..+.++++..+.. ..++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556678899999999999999986 23456889999999999999999999999999975443 45888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCC------HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHc-----CC-cccHH
Q psy12642 73 ELCDLYLSEGDYAKAVFCMEELFLHHPHN------HLLHQRYADILYTQGGLENIELAISHYLMAIN-----LN-EKNIR 140 (201)
Q Consensus 73 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~-----~~-p~~~~ 140 (201)
.+|.+|...|++++|+.+|++++...|.. ..++..+|.++...| ++++|+.+|+++++ .+ |..+.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQS---QYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 99999999999999999999999875532 247899999999999 99999999999999 67 88899
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhHHH
Q psy12642 141 ALYGLALSCHQVLTSAKCSAAKKKE 165 (201)
Q Consensus 141 ~~~~l~~~~~~~~~~~~a~~~~~~~ 165 (201)
++.++|.++...|++++|.....+.
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~a 290 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKG 290 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999999999997654433
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.80 E-value=2.6e-18 Score=126.25 Aligned_cols=127 Identities=15% Similarity=0.122 Sum_probs=116.0
Q ss_pred HHHHhhhhccCHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------cCCCH
Q psy12642 5 VYIIGCFHFFRYEEALEHLETIIKI--------DETNTAARKRKICILKAKNKIPEAIKELTEYLKK--------FMTDQ 68 (201)
Q Consensus 5 ~~~~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~ 68 (201)
..+..+...|++++|+..++++++. +|....++..+|.++...|++++|+..+++++.. .|...
T Consensus 48 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 127 (283)
T 3edt_B 48 ILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVA 127 (283)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 4567788899999999999999977 4777899999999999999999999999999987 35567
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcC
Q psy12642 69 ETWQELCDLYLSEGDYAKAVFCMEELFLH--------HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134 (201)
Q Consensus 69 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~ 134 (201)
.++..+|.++...|++++|+.++++++.. .|....++..+|.++...| ++++|+.+|+++++.
T Consensus 128 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 128 KQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG---KYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHH
Confidence 88999999999999999999999999998 6667788999999999999 999999999999986
No 86
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.80 E-value=1.4e-17 Score=107.84 Aligned_cols=121 Identities=23% Similarity=0.275 Sum_probs=112.6
Q ss_pred Cccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHH
Q psy12642 30 DETN-TAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRY 108 (201)
Q Consensus 30 ~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 108 (201)
+|.. ..++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++..+|.++..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 83 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL 83 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 4544 788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhh
Q psy12642 109 ADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL 153 (201)
Q Consensus 109 a~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 153 (201)
|.++...| ++++|+.+|+++++.+|+++.++..++.++...|
T Consensus 84 a~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 84 GNAYYKQG---DYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhc---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 99999999 9999999999999999999999999999987754
No 87
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.79 E-value=4.1e-18 Score=138.22 Aligned_cols=140 Identities=8% Similarity=-0.038 Sum_probs=132.6
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD 83 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 83 (201)
...+..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|+
T Consensus 27 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 106 (568)
T 2vsy_A 27 LMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQ 106 (568)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Confidence 44567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHc---CCcccHHHHHHHHHHHHcCCcccHHHHHHHH
Q psy12642 84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQ---GGLENIELAISHYLMAINLNEKNIRALYGLA 146 (201)
Q Consensus 84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 146 (201)
+++|+..|+++++.+|+++.++..+|.++... | ++++|+..++++++.+|++...+..++
T Consensus 107 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 107 AEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWR---ALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCT---THHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccc---cHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 99999999999999999999999999999999 8 999999999999999998776666555
No 88
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.79 E-value=3.1e-17 Score=111.72 Aligned_cols=127 Identities=12% Similarity=0.001 Sum_probs=112.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q psy12642 33 NTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADIL 112 (201)
Q Consensus 33 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 112 (201)
.+..+..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+.++++++..+|.++.++..+|.++
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 35678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHH--HHHhhhhhhhhhhh
Q psy12642 113 YTQGGLENIELAISHYLMAINLNEKNIRALYGLALS--CHQVLTSAKCSAAK 162 (201)
Q Consensus 113 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~--~~~~~~~~~a~~~~ 162 (201)
...| ++++|+.+|+++++.+|++..++..++.+ +...|++++|....
T Consensus 92 ~~~~---~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 140 (166)
T 1a17_A 92 MALG---KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGD 140 (166)
T ss_dssp HHTT---CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhc---cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999 99999999999999999988888555554 77778888875543
No 89
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=1.6e-17 Score=125.03 Aligned_cols=161 Identities=9% Similarity=-0.027 Sum_probs=143.6
Q ss_pred hHHHHHhhhhccCHHHHHHHHHHHHhcCcccHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-
Q psy12642 3 PIVYIIGCFHFFRYEEALEHLETIIKIDETNTA-ARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLS- 80 (201)
Q Consensus 3 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~-~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~- 80 (201)
++.++..+...|++++|...|+++++.+|.++. +|..+|.++...|++++|+..|+++++..|.+..+|...+.+...
T Consensus 102 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~ 181 (308)
T 2ond_A 102 YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC 181 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 455777788899999999999999999999886 999999999999999999999999999999998888877766443
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcC---Ccc-cHHHHHHHHHHHHHhhhhh
Q psy12642 81 EGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL---NEK-NIRALYGLALSCHQVLTSA 156 (201)
Q Consensus 81 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~---~p~-~~~~~~~l~~~~~~~~~~~ 156 (201)
.|++++|+.+|++++..+|+++.++..+|.++...| ++++|+..|++++.. .|+ ....|..++......|+.+
T Consensus 182 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g---~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~ 258 (308)
T 2ond_A 182 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN---EDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA 258 (308)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHH
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 799999999999999999999999999999999999 999999999999995 564 7889999999999999998
Q ss_pred hhhhhhHHHH
Q psy12642 157 KCSAAKKKEI 166 (201)
Q Consensus 157 ~a~~~~~~~~ 166 (201)
.+.....+..
T Consensus 259 ~a~~~~~~a~ 268 (308)
T 2ond_A 259 SILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8865444433
No 90
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.79 E-value=7.8e-18 Score=115.06 Aligned_cols=123 Identities=14% Similarity=0.087 Sum_probs=113.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12642 33 NTAARKRKICILKAKNKIPEAIKELTEYLKK------------------FMTDQETWQELCDLYLSEGDYAKAVFCMEEL 94 (201)
Q Consensus 33 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 94 (201)
....+...|..++..|++++|+..|.+++.. .|.+..++..+|.+|..+|++++|+..++++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4567888999999999999999999999998 7777789999999999999999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccH-HHHHHHHHHHHHhhhhhhh
Q psy12642 95 FLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNI-RALYGLALSCHQVLTSAKC 158 (201)
Q Consensus 95 l~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~a 158 (201)
+.++|+++.+++.+|.++...| ++++|+..|+++++++|+++ .+...+..+....++..+.
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g---~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~ 151 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAW---KLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKAD 151 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTS
T ss_pred HhcCCcchHHHHHHHHHHHHHh---cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 99999999999999999998 6778888888887766655
No 91
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.79 E-value=2.6e-17 Score=105.53 Aligned_cols=115 Identities=19% Similarity=0.064 Sum_probs=106.8
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q psy12642 33 NTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADIL 112 (201)
Q Consensus 33 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 112 (201)
.+..+..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Q psy12642 113 YTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH 150 (201)
Q Consensus 113 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 150 (201)
...| ++++|+..|+++++.+|+++.++..++.+..
T Consensus 83 ~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 83 EFLN---RFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHTT---CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHh---hHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 9999 9999999999999999999999888887753
No 92
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.78 E-value=2.3e-17 Score=112.40 Aligned_cols=128 Identities=14% Similarity=0.120 Sum_probs=117.5
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD 83 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 83 (201)
...+..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|+
T Consensus 17 ~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~ 96 (166)
T 1a17_A 17 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 96 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcc
Confidence 34566788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHH--HHHcCCcccHHHHHHHHHHHHcC
Q psy12642 84 YAKAVFCMEELFLHHPHNHLLHQRYADI--LYTQGGLENIELAISHYLMAINL 134 (201)
Q Consensus 84 ~~~A~~~~~~al~~~~~~~~~~~~la~~--~~~~~~~~~~~~A~~~~~~al~~ 134 (201)
+++|+.+|++++..+|.+...+..++.+ +...| ++++|+..+.++...
T Consensus 97 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 97 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQK---AFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH---HHHHHHHcccchHHH
Confidence 9999999999999999999888555544 77888 999999999987654
No 93
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.78 E-value=1.6e-17 Score=123.89 Aligned_cols=166 Identities=11% Similarity=-0.015 Sum_probs=147.4
Q ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHH
Q psy12642 30 DETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYA 109 (201)
Q Consensus 30 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la 109 (201)
.|.+...+..+|..+...|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++..+|++.......+
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999999997777777777
Q ss_pred HHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH----hHHHHHHHHHHHHhhh
Q psy12642 110 DILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQ----MMWVSKHLARQYEEQQ 185 (201)
Q Consensus 110 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~l~~~y~~~~ 185 (201)
..+...+ +.++|+..|++++..+|+++.+++.++.++...|+.++|..........- ...+...+...|....
T Consensus 193 ~~l~~~~---~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 193 IELLXQA---ADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHH---TSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHhhc---ccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 7788888 88899999999999999999999999999999999999988766655432 2456777888899888
Q ss_pred cchHHHHHHHhhc
Q psy12642 186 GNTETLTELMSAL 198 (201)
Q Consensus 186 ~~~~~~~~~~~~~ 198 (201)
+.++++..+.+++
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 8888777776654
No 94
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.78 E-value=1e-17 Score=130.07 Aligned_cols=191 Identities=9% Similarity=0.017 Sum_probs=155.3
Q ss_pred HHHHhhhhccCHHHHHHHHHHHHhcCcccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------cCCCHHHHHHH
Q psy12642 5 VYIIGCFHFFRYEEALEHLETIIKIDETNT----AARKRKICILKAKNKIPEAIKELTEYLKK------FMTDQETWQEL 74 (201)
Q Consensus 5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~l 74 (201)
..+..++..|++++|+..|+++++..|.++ .++..+|.++...|++++|+..+++++.. .|....++..+
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 355668889999999999999999999987 57889999999999999999999999987 46667899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhc------CCCCHHHHHHHHHHHHHcCCccc-----------------HHHHHHHHHHH
Q psy12642 75 CDLYLSEGDYAKAVFCMEELFLH------HPHNHLLHQRYADILYTQGGLEN-----------------IELAISHYLMA 131 (201)
Q Consensus 75 ~~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~~~~~~-----------------~~~A~~~~~~a 131 (201)
|.+|...|++++|+.++++++.. .|....++..+|.++...| + +++|+.+++++
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKG---KHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH---HHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcC---cccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999999988 4556678999999999999 9 99999999999
Q ss_pred HcCC------cccHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHh--------HHHHHHHHHHHHhhhcchHHHHHHHhh
Q psy12642 132 INLN------EKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQM--------MWVSKHLARQYEEQQGNTETLTELMSA 197 (201)
Q Consensus 132 l~~~------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~l~~~y~~~~~~~~~~~~~~~~ 197 (201)
+++. |....++..++.++...|++++|.....+...... ..+...+...|......++++..+.++
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 8764 34556899999999999999999775554432211 124455666677666666655555444
Q ss_pred c
Q psy12642 198 L 198 (201)
Q Consensus 198 ~ 198 (201)
+
T Consensus 290 l 290 (411)
T 4a1s_A 290 L 290 (411)
T ss_dssp H
T ss_pred H
Confidence 3
No 95
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=8.6e-18 Score=125.32 Aligned_cols=156 Identities=13% Similarity=0.117 Sum_probs=134.0
Q ss_pred HHHHhhhhccCHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--------CCCH
Q psy12642 5 VYIIGCFHFFRYEEALEHLETIIKI--------DETNTAARKRKICILKAKNKIPEAIKELTEYLKKF--------MTDQ 68 (201)
Q Consensus 5 ~~~~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------p~~~ 68 (201)
..+..+...|++++|+..+++++.. .|....++..+|.++...|++++|+..+++++... |...
T Consensus 74 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 153 (311)
T 3nf1_A 74 ILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVA 153 (311)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 4566788899999999999999987 47778999999999999999999999999999874 4456
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcC------
Q psy12642 69 ETWQELCDLYLSEGDYAKAVFCMEELFLH--------HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL------ 134 (201)
Q Consensus 69 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~------ 134 (201)
.++..+|.++...|++++|+.++++++.. .|....++..+|.++...| ++++|+.+|+++++.
T Consensus 154 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~ 230 (311)
T 3nf1_A 154 KQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQG---KFKQAETLYKEILTRAHEREF 230 (311)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcC
Confidence 78899999999999999999999999988 6666778999999999999 999999999999974
Q ss_pred -------------------------------------------CcccHHHHHHHHHHHHHhhhhhhhhhhhH
Q psy12642 135 -------------------------------------------NEKNIRALYGLALSCHQVLTSAKCSAAKK 163 (201)
Q Consensus 135 -------------------------------------------~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 163 (201)
.|....++..++.+|...|++++|....+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 302 (311)
T 3nf1_A 231 GSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEE 302 (311)
T ss_dssp C------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45566677777777777777777754433
No 96
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.78 E-value=7.7e-18 Score=110.76 Aligned_cols=110 Identities=11% Similarity=0.093 Sum_probs=97.2
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCH-------HH
Q psy12642 32 TNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNH-------LL 104 (201)
Q Consensus 32 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-------~~ 104 (201)
+...++..+|..++..|++++|+..|+++++++|+++.+|..+|.+|..+|++++|+..+++++.++|++. .+
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 44567888999999999999999999999999999999999999999999999999999999999887653 47
Q ss_pred HHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHH
Q psy12642 105 HQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGL 145 (201)
Q Consensus 105 ~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 145 (201)
+..+|.++...+ ++++|+++|++++...|+ +.....+
T Consensus 86 ~~~lg~~~~~~~---~~~~A~~~~~kal~~~~~-~~~~~~l 122 (127)
T 4gcn_A 86 MSRAGNAFQKQN---DLSLAVQWFHRSLSEFRD-PELVKKV 122 (127)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHhhCcC-HHHHHHH
Confidence 888999999999 999999999999998876 4444333
No 97
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.78 E-value=1.6e-17 Score=108.64 Aligned_cols=111 Identities=14% Similarity=0.112 Sum_probs=104.6
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD 83 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 83 (201)
...+..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.+++.+|.++...|+
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 87 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE 87 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhC
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcC------CCCHHHHHHHHHHHHH
Q psy12642 84 YAKAVFCMEELFLHH------PHNHLLHQRYADILYT 114 (201)
Q Consensus 84 ~~~A~~~~~~al~~~------~~~~~~~~~la~~~~~ 114 (201)
+++|+..|++++.++ |.+..++..++.+...
T Consensus 88 ~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 88 YASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 999999999999999 9999988888877644
No 98
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.77 E-value=3.6e-17 Score=129.21 Aligned_cols=194 Identities=16% Similarity=0.099 Sum_probs=142.8
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhc---------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--------CCCH
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKI---------DETNTAARKRKICILKAKNKIPEAIKELTEYLKKF--------MTDQ 68 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~---------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------p~~~ 68 (201)
.+..+..+|++++|++.|+++++. +|....++..+|.+|..+|++++|+..+++++.+. +..+
T Consensus 57 Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~ 136 (472)
T 4g1t_A 57 LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESP 136 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhH
Confidence 345567889999999999999875 56677889999999999999999999999998763 3457
Q ss_pred HHHHHHHHHHHh--cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHH
Q psy12642 69 ETWQELCDLYLS--EGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLA 146 (201)
Q Consensus 69 ~~~~~l~~~~~~--~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 146 (201)
.++..+|.++.. .++|++|+.+|++++.++|+++.++..+|.+++..+...+.++|++.|+++++++|+++.++..++
T Consensus 137 ~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~ 216 (472)
T 4g1t_A 137 ELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLA 216 (472)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHH
Confidence 888888877665 457999999999999999999999999998876543222677888999999999998888888888
Q ss_pred HHHHHhh----hhhhhhhhhHHHHH--HHhHHHHHHHHHHHHhhhcchHHHHHHHhhcc
Q psy12642 147 LSCHQVL----TSAKCSAAKKKEIS--KQMMWVSKHLARQYEEQQGNTETLTELMSALQ 199 (201)
Q Consensus 147 ~~~~~~~----~~~~a~~~~~~~~~--~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~ 199 (201)
.++...+ +..+|....++... .....+...+...|......+.++..+.+++.
T Consensus 217 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 275 (472)
T 4g1t_A 217 LKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALE 275 (472)
T ss_dssp HHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 7776654 33444433332221 11223344556666666666665555555443
No 99
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.77 E-value=1.1e-17 Score=109.18 Aligned_cols=103 Identities=12% Similarity=0.071 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q psy12642 35 AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYT 114 (201)
Q Consensus 35 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 114 (201)
..++.+|..+...|++++|+..++++++.+|+++.+|+.+|.++...|++++|+..|++++.++|+++.++..+|.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHHHHHHHHHHcCCcccHH
Q psy12642 115 QGGLENIELAISHYLMAINLNEKNIR 140 (201)
Q Consensus 115 ~~~~~~~~~A~~~~~~al~~~p~~~~ 140 (201)
.| ++++|+..|+++++.+|++..
T Consensus 98 ~g---~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 98 EH---NANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HH---HHHHHHHHHHHHHC-------
T ss_pred cC---CHHHHHHHHHHHHHhCcCCCC
Confidence 99 999999999999999998653
No 100
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.77 E-value=5.5e-17 Score=106.17 Aligned_cols=126 Identities=20% Similarity=0.239 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q psy12642 35 AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYT 114 (201)
Q Consensus 35 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 114 (201)
.++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++...|.++..+..+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhH
Q psy12642 115 QGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKK 163 (201)
Q Consensus 115 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 163 (201)
.| ++++|+..+++++...|+++.++..++.++...|+.++|.....
T Consensus 82 ~~---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 82 QG---DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp TT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hc---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 99 99999999999999999999999999999999999998855433
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.77 E-value=2.4e-18 Score=119.32 Aligned_cols=164 Identities=10% Similarity=0.062 Sum_probs=135.9
Q ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q psy12642 31 ETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYAD 110 (201)
Q Consensus 31 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 110 (201)
|.....+..+|..+...|++++|+..++++++.+|+++.++..+|.++...|++++|+..+++++..+| ++......+.
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~ 81 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAK 81 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHH
Confidence 444456778999999999999999999999999999999999999999999999999999999999999 8877766665
Q ss_pred HHH-HcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHh----HHHHHHHHHHHHhhh
Q psy12642 111 ILY-TQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQM----MWVSKHLARQYEEQQ 185 (201)
Q Consensus 111 ~~~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~l~~~y~~~~ 185 (201)
+.. ..+ ...+|+..++++++.+|+++.+++.++.++...|++++|.....+...... ..+...+...|....
T Consensus 82 ~~~~~~~---~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g 158 (176)
T 2r5s_A 82 LELHQQA---AESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALG 158 (176)
T ss_dssp HHHHHHH---TSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHC
T ss_pred HHHHhhc---ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhC
Confidence 533 222 334589999999999999999999999999999999999877665553321 336667888899888
Q ss_pred cchHHHHHHHhhc
Q psy12642 186 GNTETLTELMSAL 198 (201)
Q Consensus 186 ~~~~~~~~~~~~~ 198 (201)
..++++..+.++|
T Consensus 159 ~~~~A~~~y~~al 171 (176)
T 2r5s_A 159 QGNAIASKYRRQL 171 (176)
T ss_dssp SSCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 8888777776655
No 102
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.77 E-value=2.2e-17 Score=127.50 Aligned_cols=192 Identities=10% Similarity=0.037 Sum_probs=152.9
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------cCCCHHHHHH
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNT----AARKRKICILKAKNKIPEAIKELTEYLKK------FMTDQETWQE 73 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~ 73 (201)
+..+..++..|++++|+..|+++++..|.++ .++..+|.++...|++++|+..+++++.. .|....++..
T Consensus 13 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 92 (406)
T 3sf4_A 13 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 92 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 4456778899999999999999999999884 67889999999999999999999999876 3344678899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCC------HHHHHHHHHHHHHcCCccc--------------------HHHHHHH
Q psy12642 74 LCDLYLSEGDYAKAVFCMEELFLHHPHN------HLLHQRYADILYTQGGLEN--------------------IELAISH 127 (201)
Q Consensus 74 l~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~--------------------~~~A~~~ 127 (201)
+|.++...|++++|+.++++++...|.. ..++..+|.++...| + +++|+.+
T Consensus 93 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 93 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG---KSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH---HTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcC---CcccccccchhhhhhhhHHHHHHHHHHH
Confidence 9999999999999999999999876643 448899999999999 9 9999999
Q ss_pred HHHHHcC------CcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH--------HhHHHHHHHHHHHHhhhcchHHHHH
Q psy12642 128 YLMAINL------NEKNIRALYGLALSCHQVLTSAKCSAAKKKEISK--------QMMWVSKHLARQYEEQQGNTETLTE 193 (201)
Q Consensus 128 ~~~al~~------~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~l~~~y~~~~~~~~~~~~ 193 (201)
+++++.+ .|....++..++.++...|++++|.....+.... ....+...+...|......+.++..
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 249 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 9999886 4455678999999999999999997755444321 1122444566666666666555555
Q ss_pred HHhhc
Q psy12642 194 LMSAL 198 (201)
Q Consensus 194 ~~~~~ 198 (201)
+.+++
T Consensus 250 ~~~al 254 (406)
T 3sf4_A 250 YKKTL 254 (406)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 103
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.77 E-value=3.9e-17 Score=122.52 Aligned_cols=191 Identities=9% Similarity=0.027 Sum_probs=149.8
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------cCCCHHHHHH
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNT----AARKRKICILKAKNKIPEAIKELTEYLKK------FMTDQETWQE 73 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~ 73 (201)
+..+..++..|++++|+..|+++++.+|.++ .++..+|.++...|++++|+..+++++.. .|....++..
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 4456778899999999999999999999884 67889999999999999999999999876 3444678899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCC------HHHHHHHHHHHHHcCCccc--------------------HHHHHHH
Q psy12642 74 LCDLYLSEGDYAKAVFCMEELFLHHPHN------HLLHQRYADILYTQGGLEN--------------------IELAISH 127 (201)
Q Consensus 74 l~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~--------------------~~~A~~~ 127 (201)
+|.++...|++++|+..+++++...|.. ..++..+|.++...| + +++|+.+
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG---KSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH---HTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcC---cccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 9999999999999999999999875533 348889999999999 9 9999999
Q ss_pred HHHHHcC------CcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH--------HhHHHHHHHHHHHHhhhcchHHHHH
Q psy12642 128 YLMAINL------NEKNIRALYGLALSCHQVLTSAKCSAAKKKEISK--------QMMWVSKHLARQYEEQQGNTETLTE 193 (201)
Q Consensus 128 ~~~al~~------~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~l~~~y~~~~~~~~~~~~ 193 (201)
+++++.. .|....++..++.++...|++++|.....+.... ....+...+...|......+.++..
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999876 3445678999999999999999997755443321 1112334455556555555554444
Q ss_pred HHhh
Q psy12642 194 LMSA 197 (201)
Q Consensus 194 ~~~~ 197 (201)
+.++
T Consensus 246 ~~~a 249 (338)
T 3ro2_A 246 YKKT 249 (338)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 104
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.76 E-value=2.5e-17 Score=125.56 Aligned_cols=127 Identities=13% Similarity=0.029 Sum_probs=118.9
Q ss_pred HHHHhhhhccCHHHHHHHHHHHHhcCccc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH
Q psy12642 5 VYIIGCFHFFRYEEALEHLETIIKIDETN---------------TAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQE 69 (201)
Q Consensus 5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 69 (201)
..+..++..|++++|+..|++++..+|.+ ..++..+|.++...|++++|+..+++++..+|+++.
T Consensus 152 ~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~ 231 (336)
T 1p5q_A 152 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEK 231 (336)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 35677899999999999999999999998 699999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHH-HHHHHHHHcC
Q psy12642 70 TWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELA-ISHYLMAINL 134 (201)
Q Consensus 70 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A-~~~~~~al~~ 134 (201)
+++.+|.+|..+|++++|+.+|++++.++|++..++..++.++...+ ++++| ...|.+.+..
T Consensus 232 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~---~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 232 GLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIR---RQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 99988 5577776643
No 105
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.76 E-value=1.6e-16 Score=118.62 Aligned_cols=156 Identities=17% Similarity=0.136 Sum_probs=132.0
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcCcccH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHH
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKIDETNT------AARKRKICILKAKNKIPEAIKELTEYLKKFMTD------QETWQE 73 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~ 73 (201)
.+..++..|++++|++.+.++++..|... ..+..+|.++...|++++|+..+++++...+.. ..++..
T Consensus 81 ~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 2qfc_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 34567889999999999999999876544 445678888999999999999999999865543 568899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHh---hcCCCCH----HHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc------cHH
Q psy12642 74 LCDLYLSEGDYAKAVFCMEELF---LHHPHNH----LLHQRYADILYTQGGLENIELAISHYLMAINLNEK------NIR 140 (201)
Q Consensus 74 l~~~~~~~~~~~~A~~~~~~al---~~~~~~~----~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~ 140 (201)
+|.+|..+|++++|+.+|++++ ...|++. .++.++|.++...| ++++|+.++++++++.++ ...
T Consensus 161 lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~---~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS---RYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHh---hHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 9999999999999999999999 5566643 58899999999999 999999999999988654 277
Q ss_pred HHHHHHHHHHHhhhhhhh-hhhhHH
Q psy12642 141 ALYGLALSCHQVLTSAKC-SAAKKK 164 (201)
Q Consensus 141 ~~~~l~~~~~~~~~~~~a-~~~~~~ 164 (201)
+++++|.+|..+|++++| ....++
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 899999999999999999 443433
No 106
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.76 E-value=1.6e-16 Score=125.53 Aligned_cols=143 Identities=12% Similarity=-0.038 Sum_probs=126.6
Q ss_pred hhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----cCC
Q psy12642 11 FHFFRYEEALEHLETIIKIDETNTAARKRKICILKA---KNKIPEAIKELTEYLKKFMTDQETWQELCDLYLS----EGD 83 (201)
Q Consensus 11 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~---~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~ 83 (201)
+..++|++|+.+|+++++.+|+++.++..++.++.. .++.++|+..++++++++|+++.++..+|..+.. .|+
T Consensus 149 ~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~ 228 (472)
T 4g1t_A 149 CGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEE 228 (472)
T ss_dssp HCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC-----
T ss_pred HccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhH
Confidence 345689999999999999999999999999888554 5778899999999999999999999988876654 467
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhh
Q psy12642 84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSA 156 (201)
Q Consensus 84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 156 (201)
+++|..++++++..+|.++.++..+|.++...| ++++|+..|+++++.+|+++.++..+|.+|...+...
T Consensus 229 ~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~ 298 (472)
T 4g1t_A 229 EGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKD---EPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQV 298 (472)
T ss_dssp -CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcC---chHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHh
Confidence 889999999999999999999999999999999 9999999999999999999999999999998765543
No 107
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.76 E-value=3e-17 Score=122.69 Aligned_cols=152 Identities=14% Similarity=0.021 Sum_probs=122.5
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcCCC------HHHHH
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKIDETN------TAARKRKICILKAK-NKIPEAIKELTEYLKKFMTD------QETWQ 72 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~p~~------~~~~~ 72 (201)
.+..+...|++++|+.+|+++++..|.. ..++..+|.++... |++++|+..|++++.+.|.+ ..++.
T Consensus 83 lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~ 162 (292)
T 1qqe_A 83 AYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFI 162 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 4566788999999999999999987653 46888999999996 99999999999999998764 46788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCHH-------HHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHH----
Q psy12642 73 ELCDLYLSEGDYAKAVFCMEELFLHHPHNHL-------LHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRA---- 141 (201)
Q Consensus 73 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-------~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~---- 141 (201)
.+|.++..+|++++|+.+|++++...|++.. ++..+|.++...| ++++|+.+|+++++++|+....
T Consensus 163 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~l~p~~~~~~~~~ 239 (292)
T 1qqe_A 163 KCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAAT---DAVAAARTLQEGQSEDPNFADSRESN 239 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTT---CHHHHHHHHHGGGCC---------HH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 9999999999999999999999999987653 6789999999999 9999999999999999986553
Q ss_pred -HHHHHHHHH--Hhhhhhhhhh
Q psy12642 142 -LYGLALSCH--QVLTSAKCSA 160 (201)
Q Consensus 142 -~~~l~~~~~--~~~~~~~a~~ 160 (201)
+..++.++. ..+++.+|..
T Consensus 240 ~l~~l~~~~~~~~~~~~~~A~~ 261 (292)
T 1qqe_A 240 FLKSLIDAVNEGDSEQLSEHCK 261 (292)
T ss_dssp HHHHHHHHHHTTCTTTHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHH
Confidence 344555554 3344555544
No 108
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.76 E-value=1.4e-16 Score=114.64 Aligned_cols=159 Identities=10% Similarity=0.008 Sum_probs=134.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHH---HHH
Q psy12642 33 NTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD---QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHL---LHQ 106 (201)
Q Consensus 33 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~ 106 (201)
.+..++.+|..+...|++++|+..|++++...|++ ..+++.+|.+|+..|++++|+..|++++..+|+++. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 46778899999999999999999999999999987 478999999999999999999999999999998864 788
Q ss_pred HHHHHHHH------------------cCCcccHHHHHHHHHHHHcCCcccHHHH-----------------HHHHHHHHH
Q psy12642 107 RYADILYT------------------QGGLENIELAISHYLMAINLNEKNIRAL-----------------YGLALSCHQ 151 (201)
Q Consensus 107 ~la~~~~~------------------~~~~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~l~~~~~~ 151 (201)
.+|.++.. .| ++++|+..|+++++.+|+++.++ ..++.+|..
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~ 159 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQ---QARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTE 159 (225)
T ss_dssp HHHHHHHHHHC--------------CCH---HHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcH---HHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998876 46 89999999999999999987554 578889999
Q ss_pred hhhhhhhhhhhHHHHHHH-----hHHHHHHHHHHHHhhhcchHHHHHH
Q psy12642 152 VLTSAKCSAAKKKEISKQ-----MMWVSKHLARQYEEQQGNTETLTEL 194 (201)
Q Consensus 152 ~~~~~~a~~~~~~~~~~~-----~~~~~~~l~~~y~~~~~~~~~~~~~ 194 (201)
.|++.+|.....+..... ...+...+...|..+...+.+++.+
T Consensus 160 ~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~ 207 (225)
T 2yhc_A 160 RGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVA 207 (225)
T ss_dssp HTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 999999987766555432 3355667788888888777755444
No 109
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.76 E-value=1.2e-17 Score=129.62 Aligned_cols=190 Identities=13% Similarity=0.069 Sum_probs=137.5
Q ss_pred HHHHhhhhccCHHHHHHHHHHHHhc------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------cCCCHHHHH
Q psy12642 5 VYIIGCFHFFRYEEALEHLETIIKI------DETNTAARKRKICILKAKNKIPEAIKELTEYLKK------FMTDQETWQ 72 (201)
Q Consensus 5 ~~~~~~~~~~~~~~A~~~~~~~l~~------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~ 72 (201)
..+..+...|++++|+..++++++. .|....++..+|.++...|++++|+..+++++.. .|....++.
T Consensus 91 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 170 (411)
T 4a1s_A 91 QLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALY 170 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 3556677788888888888888877 5677788888888888888888888888888876 444566788
Q ss_pred HHHHHHHhcCC-----------------HHHHHHHHHHHhhcC------CCCHHHHHHHHHHHHHcCCcccHHHHHHHHH
Q psy12642 73 ELCDLYLSEGD-----------------YAKAVFCMEELFLHH------PHNHLLHQRYADILYTQGGLENIELAISHYL 129 (201)
Q Consensus 73 ~l~~~~~~~~~-----------------~~~A~~~~~~al~~~------~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~ 129 (201)
.+|.+|...|+ +++|+.++++++.+. +....++..+|.++...| ++++|+.+|+
T Consensus 171 ~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~ 247 (411)
T 4a1s_A 171 NLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLG---DFQAAIEHHQ 247 (411)
T ss_dssp HHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC---ChHHHHHHHH
Confidence 88888888888 888888888887653 223457788888888888 8888888888
Q ss_pred HHHcCCcccHH------HHHHHHHHHHHhhhhhhhhhhhHHHHHHHh--------HHHHHHHHHHHHhhhcchHHHHHHH
Q psy12642 130 MAINLNEKNIR------ALYGLALSCHQVLTSAKCSAAKKKEISKQM--------MWVSKHLARQYEEQQGNTETLTELM 195 (201)
Q Consensus 130 ~al~~~p~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~l~~~y~~~~~~~~~~~~~~ 195 (201)
+++++.|.... ++..++.++...|++++|.....+...... ..+...+...|......+.++..+.
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (411)
T 4a1s_A 248 ERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHN 327 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88887765333 778888888888888888665544432211 2344455556666555555544444
Q ss_pred hh
Q psy12642 196 SA 197 (201)
Q Consensus 196 ~~ 197 (201)
++
T Consensus 328 ~a 329 (411)
T 4a1s_A 328 RH 329 (411)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 110
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.76 E-value=1.9e-17 Score=110.84 Aligned_cols=111 Identities=7% Similarity=-0.088 Sum_probs=101.3
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD 83 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 83 (201)
+..+..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.+++.+|.++...|+
T Consensus 22 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 101 (142)
T 2xcb_A 22 YALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGD 101 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q psy12642 84 YAKAVFCMEELFLHHPHNHLLHQRYADILYT 114 (201)
Q Consensus 84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 114 (201)
+++|+.+|++++..+|+++........+...
T Consensus 102 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 132 (142)
T 2xcb_A 102 LDGAESGFYSARALAAAQPAHEALAARAGAM 132 (142)
T ss_dssp HHHHHHHHHHHHHHHHTCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcchHHHHHHHHHH
Confidence 9999999999999999887765555544433
No 111
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.75 E-value=7.4e-17 Score=105.19 Aligned_cols=113 Identities=9% Similarity=-0.003 Sum_probs=108.2
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD 83 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 83 (201)
...+..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++...|+++.++..+|.++...|+
T Consensus 16 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (131)
T 2vyi_A 16 KTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNK 95 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCC
Confidence 34567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcC
Q psy12642 84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQG 116 (201)
Q Consensus 84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 116 (201)
+++|+.++++++..+|+++.++..+|.++...|
T Consensus 96 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 96 HVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998887
No 112
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.75 E-value=4e-17 Score=110.17 Aligned_cols=103 Identities=11% Similarity=-0.036 Sum_probs=96.9
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD 83 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 83 (201)
+..+..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++..+|+++.+++.+|.++...|+
T Consensus 25 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 104 (148)
T 2vgx_A 25 YSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGE 104 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCC
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHH
Q psy12642 84 YAKAVFCMEELFLHHPHNHLLHQ 106 (201)
Q Consensus 84 ~~~A~~~~~~al~~~~~~~~~~~ 106 (201)
+++|+.+|++++.++|+++....
T Consensus 105 ~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 105 LAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHHHCcCCCcchH
Confidence 99999999999999998776543
No 113
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.75 E-value=3e-16 Score=121.08 Aligned_cols=156 Identities=13% Similarity=0.068 Sum_probs=134.5
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcC------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-------HHHHH
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKID------ETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD-------QETWQ 72 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~ 72 (201)
.+..++..|++++|+..|++++... |....++..+|.++...|+++.|+..+++++...+.. ..++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 4566788999999999999999863 3456889999999999999999999999999875532 45788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCC--C----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHc-----CCcccHHH
Q psy12642 73 ELCDLYLSEGDYAKAVFCMEELFLHHP--H----NHLLHQRYADILYTQGGLENIELAISHYLMAIN-----LNEKNIRA 141 (201)
Q Consensus 73 ~l~~~~~~~~~~~~A~~~~~~al~~~~--~----~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~ 141 (201)
.+|.+|...|++++|+.+|++++...+ + ...++..+|.++...| ++++|+.+|++++. .+|..+.+
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSG---DDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 899999999999999999999998643 1 2357889999999999 99999999999999 88888999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHH
Q psy12642 142 LYGLALSCHQVLTSAKCSAAKKK 164 (201)
Q Consensus 142 ~~~l~~~~~~~~~~~~a~~~~~~ 164 (201)
+..+|.++...|++++|....++
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~ 286 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEE 286 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999999999664443
No 114
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.75 E-value=6.8e-16 Score=115.74 Aligned_cols=185 Identities=13% Similarity=0.006 Sum_probs=131.6
Q ss_pred hhhhcc--CHHHHHHHHHHHHhcCcccHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q psy12642 9 GCFHFF--RYEEALEHLETIIKIDETNTAARKRKICIL----KAK---NKIPEAIKELTEYLKKFMTDQETWQELCDLYL 79 (201)
Q Consensus 9 ~~~~~~--~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~----~~~---~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 79 (201)
.+...+ ++++++.+++.++..+|.+..+|..++.++ ... +++++++..+.+++..+|.+..+|...+.+..
T Consensus 76 ~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~ 155 (306)
T 3dra_A 76 ILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVD 155 (306)
T ss_dssp HHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344455 788888888888888888888888877777 555 67778888888888888888888888887777
Q ss_pred hcCCHH--HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCccc------HHHHHHHHHHHHcCCcccHHHHHHHHHHHHH
Q psy12642 80 SEGDYA--KAVFCMEELFLHHPHNHLLHQRYADILYTQGGLEN------IELAISHYLMAINLNEKNIRALYGLALSCHQ 151 (201)
Q Consensus 80 ~~~~~~--~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 151 (201)
..|.++ +++.++.+++..+|.|..+|...+.++...+ . ++++++++.+++..+|++..+|.+++.++..
T Consensus 156 ~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~---~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~ 232 (306)
T 3dra_A 156 TFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKK---HLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHER 232 (306)
T ss_dssp HTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSG---GGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc---ccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 778777 8888888888888888888888888877776 5 8888888888888888888888888888888
Q ss_pred hhhhhhhhhhhHHHHHHH------hHHHHHHHHHHHHhhhcchHHHHHHHh
Q psy12642 152 VLTSAKCSAAKKKEISKQ------MMWVSKHLARQYEEQQGNTETLTELMS 196 (201)
Q Consensus 152 ~~~~~~a~~~~~~~~~~~------~~~~~~~l~~~y~~~~~~~~~~~~~~~ 196 (201)
.|....+..+......++ ...+..-+..+|.+....+++++.+..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 233 FDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp TTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 876544433221111111 224455566666655444445544433
No 115
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=5.4e-17 Score=108.44 Aligned_cols=120 Identities=15% Similarity=0.017 Sum_probs=112.3
Q ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHH
Q psy12642 29 IDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD---QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLH 105 (201)
Q Consensus 29 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 105 (201)
.+|.+...+..+|..+...|++++|+..++++++..|++ ..++..+|.++...|++++|+..+++++..+|+++.++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 457788999999999999999999999999999999987 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH
Q psy12642 106 QRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 151 (201)
Q Consensus 106 ~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 151 (201)
+.+|.++...+ ++++|+.+|+++++++|++..++..++.+...
T Consensus 103 ~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 103 YRRSQALEKLG---RLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHHT---CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 99999999999 99999999999999999999988888776543
No 116
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.75 E-value=2.3e-17 Score=127.35 Aligned_cols=189 Identities=14% Similarity=0.081 Sum_probs=111.7
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHcCC--------------------HHHHHHHHHH
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKIDETN------TAARKRKICILKAKNK--------------------IPEAIKELTE 59 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~~a~~~~~~~~--------------------~~~A~~~~~~ 59 (201)
.+..+...|++++|+..+++++...|.. ..++..+|.++...|+ +++|+..+.+
T Consensus 93 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 172 (406)
T 3sf4_A 93 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEE 172 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 3444556667777777766666655432 3466666666666666 6666666666
Q ss_pred HHHh------cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCH------HHHHHHHHHHHHcCCcccHHHHHHH
Q psy12642 60 YLKK------FMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNH------LLHQRYADILYTQGGLENIELAISH 127 (201)
Q Consensus 60 ~~~~------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~la~~~~~~~~~~~~~~A~~~ 127 (201)
++.. .|....++..+|.++...|++++|+.++++++...|... .++..+|.++...| ++++|+.+
T Consensus 173 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~ 249 (406)
T 3sf4_A 173 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG---EFETASEY 249 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC---ChHHHHHH
Confidence 6654 222244566667777777777777777777766544322 25666777777777 77777777
Q ss_pred HHHHHcCCccc------HHHHHHHHHHHHHhhhhhhhhhhhHHHHHH--------HhHHHHHHHHHHHHhhhcchHHHHH
Q psy12642 128 YLMAINLNEKN------IRALYGLALSCHQVLTSAKCSAAKKKEISK--------QMMWVSKHLARQYEEQQGNTETLTE 193 (201)
Q Consensus 128 ~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~l~~~y~~~~~~~~~~~~ 193 (201)
+++++.+.|.. ..++..++.++...|++++|.....+...- ....+...+...|......+.++..
T Consensus 250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 329 (406)
T 3sf4_A 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHF 329 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777665543 556667777777777777775544333211 1122333455555555555554444
Q ss_pred HHhh
Q psy12642 194 LMSA 197 (201)
Q Consensus 194 ~~~~ 197 (201)
+.++
T Consensus 330 ~~~a 333 (406)
T 3sf4_A 330 AEKH 333 (406)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 117
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.75 E-value=4.2e-17 Score=111.60 Aligned_cols=110 Identities=11% Similarity=-0.017 Sum_probs=102.3
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD 83 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 83 (201)
+..+..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++..+|+++.+|+.+|.++..+|+
T Consensus 15 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 94 (164)
T 3sz7_A 15 KSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMAD 94 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC
Confidence 44667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q psy12642 84 YAKAVFCMEELFLHHPHNHLLHQRYADILY 113 (201)
Q Consensus 84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 113 (201)
+++|+.+|++++.++|++...+...+....
T Consensus 95 ~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 124 (164)
T 3sz7_A 95 YKGAKEAYEKGIEAEGNGGSDAMKRGLETT 124 (164)
T ss_dssp HHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 999999999999999999887666665433
No 118
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.75 E-value=7.2e-17 Score=105.35 Aligned_cols=120 Identities=14% Similarity=0.070 Sum_probs=110.3
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-------HHH
Q psy12642 32 TNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHN-------HLL 104 (201)
Q Consensus 32 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~ 104 (201)
..+..+..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+.++++++...|.+ +.+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 4567888999999999999999999999999999999999999999999999999999999999998877 889
Q ss_pred HHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhh
Q psy12642 105 HQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTS 155 (201)
Q Consensus 105 ~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 155 (201)
+..+|.++...| ++++|+.+|+++++..| ++..+..++.+...+++.
T Consensus 82 ~~~la~~~~~~~---~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 128 (131)
T 1elr_A 82 YARIGNSYFKEE---KYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQ 128 (131)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc---cHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence 999999999999 99999999999999998 588888898888877654
No 119
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.75 E-value=5.8e-17 Score=106.27 Aligned_cols=113 Identities=15% Similarity=0.107 Sum_probs=107.8
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD 83 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 83 (201)
...+..++..|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|+
T Consensus 20 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~ 99 (133)
T 2lni_A 20 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKD 99 (133)
T ss_dssp HHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhh
Confidence 44667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcC
Q psy12642 84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQG 116 (201)
Q Consensus 84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 116 (201)
+++|+.+|++++..+|.+..++..++.++...+
T Consensus 100 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 100 YTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 999999999999999999999999999988766
No 120
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.74 E-value=1.5e-17 Score=112.18 Aligned_cols=114 Identities=11% Similarity=0.023 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-------CHH-----HHHHHHHHHHhcCCHHHHHHHHHHHhhc----
Q psy12642 34 TAARKRKICILKAKNKIPEAIKELTEYLKKFMT-------DQE-----TWQELCDLYLSEGDYAKAVFCMEELFLH---- 97 (201)
Q Consensus 34 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-------~~~-----~~~~l~~~~~~~~~~~~A~~~~~~al~~---- 97 (201)
...+...|..++..|++++|+..|+++++.+|+ +.. +|..+|.++..+|+|++|+.+++++|.+
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 456778899999999999999999999999998 544 9999999999999999999999999999
Q ss_pred ---CCCCHHHH----HHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Q psy12642 98 ---HPHNHLLH----QRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH 150 (201)
Q Consensus 98 ---~~~~~~~~----~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 150 (201)
+|++..+| +++|.++..+| ++++|+..|+++++++|++......+..+-.
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lg---r~eEAl~~y~kAlel~p~d~~~~~~~~~~~~ 147 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLG---RGAEAMPEFKKVVEMIEERKGETPGKERMME 147 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHCCSCCTTHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCC---CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 99999999 99999999999 9999999999999999987665555544433
No 121
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.74 E-value=3.2e-17 Score=121.94 Aligned_cols=98 Identities=11% Similarity=-0.015 Sum_probs=91.9
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD 83 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 83 (201)
...+..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.+++.+|.++..+|+
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 87 (281)
T 2c2l_A 8 KEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMES 87 (281)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCC
Q psy12642 84 YAKAVFCMEELFLHHPHN 101 (201)
Q Consensus 84 ~~~A~~~~~~al~~~~~~ 101 (201)
+++|+..|++++.++|++
T Consensus 88 ~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 88 YDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCccc
Confidence 999999999999988865
No 122
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.74 E-value=4.4e-17 Score=106.21 Aligned_cols=100 Identities=14% Similarity=0.039 Sum_probs=89.9
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD 83 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 83 (201)
+..+..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++.+|+++.++..+|.++...|+
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 44667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCHH
Q psy12642 84 YAKAVFCMEELFLHHPHNHL 103 (201)
Q Consensus 84 ~~~A~~~~~~al~~~~~~~~ 103 (201)
+++|+..+++++..+|++..
T Consensus 101 ~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 101 ANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHhCcCCCC
Confidence 99999999999999998653
No 123
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.74 E-value=4.3e-16 Score=111.18 Aligned_cols=153 Identities=11% Similarity=-0.050 Sum_probs=127.0
Q ss_pred HHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy12642 5 VYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKN----KIPEAIKELTEYLKKFMTDQETWQELCDLYLS 80 (201)
Q Consensus 5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~----~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 80 (201)
.++..+...+++++|+.+|+++.+. .++.+++.+|.+|.. + ++++|+.+|+++.+ +.++.+++.+|.+|..
T Consensus 23 ~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~ 97 (212)
T 3rjv_A 23 YLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVN 97 (212)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHc
Confidence 3556677789999999999999865 578889999999888 6 89999999999865 6789999999999987
Q ss_pred ----cCCHHHHHHHHHHHhhcCC--CCHHHHHHHHHHHHH----cCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Q psy12642 81 ----EGDYAKAVFCMEELFLHHP--HNHLLHQRYADILYT----QGGLENIELAISHYLMAINLNEKNIRALYGLALSCH 150 (201)
Q Consensus 81 ----~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~----~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 150 (201)
.+++++|+.+|++++...| .++.+++.+|.++.. .+ ++++|+.+|+++++. |+++.++++|+.+|.
T Consensus 98 g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~---d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~ 173 (212)
T 3rjv_A 98 RQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPE---DDVKASEYFKGSSSL-SRTGYAEYWAGMMFQ 173 (212)
T ss_dssp GGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSC---CHHHHHHHHHHHHHT-SCTTHHHHHHHHHHH
T ss_pred CCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCC---CHHHHHHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence 8899999999999998887 358899999999988 66 899999999999988 666778999999997
Q ss_pred Hh-h-----hhhhhhhhhHHHH
Q psy12642 151 QV-L-----TSAKCSAAKKKEI 166 (201)
Q Consensus 151 ~~-~-----~~~~a~~~~~~~~ 166 (201)
.- | +.++|..-.++..
T Consensus 174 ~g~gg~~~~d~~~A~~~~~~A~ 195 (212)
T 3rjv_A 174 QGEKGFIEPNKQKALHWLNVSC 195 (212)
T ss_dssp HCBTTTBCCCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHH
Confidence 64 2 5667755444444
No 124
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.73 E-value=4.1e-17 Score=122.39 Aligned_cols=190 Identities=15% Similarity=0.103 Sum_probs=101.5
Q ss_pred HHhhhhccCHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHcCC--------------------HHHHHHHHHHH
Q psy12642 7 IIGCFHFFRYEEALEHLETIIKIDETN------TAARKRKICILKAKNK--------------------IPEAIKELTEY 60 (201)
Q Consensus 7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~~a~~~~~~~~--------------------~~~A~~~~~~~ 60 (201)
+..+...|++++|+..++++++..|.. ..++..+|.++...|+ +++|+..++++
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 334455566666666666655543322 2355555666666666 56666665555
Q ss_pred HHhc------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC------HHHHHHHHHHHHHcCCcccHHHHHHHH
Q psy12642 61 LKKF------MTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHN------HLLHQRYADILYTQGGLENIELAISHY 128 (201)
Q Consensus 61 ~~~~------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~~~~A~~~~ 128 (201)
+... |....++..+|.++...|++++|+.++++++...+.. ..++..+|.++...| ++++|+.++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~ 246 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG---EFETASEYY 246 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT---CHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC---CHHHHHHHH
Confidence 5431 1223355556666666666666666666666543321 125566666666666 666666666
Q ss_pred HHHHcCCccc------HHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH--------hHHHHHHHHHHHHhhhcchHHHHHH
Q psy12642 129 LMAINLNEKN------IRALYGLALSCHQVLTSAKCSAAKKKEISKQ--------MMWVSKHLARQYEEQQGNTETLTEL 194 (201)
Q Consensus 129 ~~al~~~p~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~l~~~y~~~~~~~~~~~~~ 194 (201)
++++...|.. ..++..++.++...|++++|.....+..... ...+...+...|......++++..+
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (338)
T 3ro2_A 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 326 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 6666555443 4556666666666666666655433332111 1123334555555555555555555
Q ss_pred Hhhcc
Q psy12642 195 MSALQ 199 (201)
Q Consensus 195 ~~~~~ 199 (201)
.+++.
T Consensus 327 ~~a~~ 331 (338)
T 3ro2_A 327 EKHLE 331 (338)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 125
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.73 E-value=1.7e-16 Score=103.87 Aligned_cols=112 Identities=11% Similarity=-0.008 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC---HHHHHHHH
Q psy12642 36 ARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ---ETWQELCDLYLSEGDYAKAVFCMEELFLHHPHN---HLLHQRYA 109 (201)
Q Consensus 36 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la 109 (201)
+++.+|.++...|++++|+..++++++.+|+++ .+++.+|.++...|++++|+..|++++..+|++ +.+++.+|
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 356677788888888888888888888888776 678888888888888888888888888888887 77788888
Q ss_pred HHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Q psy12642 110 DILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH 150 (201)
Q Consensus 110 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 150 (201)
.++...| ++++|+..|+++++..|+++.+......+..
T Consensus 84 ~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~ 121 (129)
T 2xev_A 84 LSQYGEG---KNTEAQQTLQQVATQYPGSDAARVAQERLQS 121 (129)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred HHHHHcC---CHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 8888888 8888888888888888877766555544433
No 126
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.73 E-value=4.7e-16 Score=99.57 Aligned_cols=109 Identities=13% Similarity=0.053 Sum_probs=103.6
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD 83 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 83 (201)
+..+..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++...|+++.++..+|.++...|+
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 87 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 87 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhh
Confidence 44567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q psy12642 84 YAKAVFCMEELFLHHPHNHLLHQRYADIL 112 (201)
Q Consensus 84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~ 112 (201)
+++|+..+++++..+|+++.++..++.+.
T Consensus 88 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 88 FEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 99999999999999999999999988764
No 127
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.72 E-value=1.6e-16 Score=118.60 Aligned_cols=156 Identities=17% Similarity=0.155 Sum_probs=129.1
Q ss_pred HHhhhhccCHHHHHHHHHHHHhcCcccHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHH
Q psy12642 7 IIGCFHFFRYEEALEHLETIIKIDETNTA------ARKRKICILKAKNKIPEAIKELTEYLKKFMTD------QETWQEL 74 (201)
Q Consensus 7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l 74 (201)
+..++..|++++|+..+++++...+..+. .+..+|.++...+++++|+..+++++...+.. ..++..+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 45678899999999999999997766554 33457888888899999999999999965443 3478999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhc-------CCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCccc------HHH
Q psy12642 75 CDLYLSEGDYAKAVFCMEELFLH-------HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN------IRA 141 (201)
Q Consensus 75 ~~~~~~~~~~~~A~~~~~~al~~-------~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~ 141 (201)
|.+|..+|++++|+.+|++++.. .+....++.++|.++...| ++++|+.++++++++.+.. ..+
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~---~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS---RYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 99999999999999999999952 1223457899999999999 9999999999999887654 789
Q ss_pred HHHHHHHHHHhhh-hhhhhhhhHHH
Q psy12642 142 LYGLALSCHQVLT-SAKCSAAKKKE 165 (201)
Q Consensus 142 ~~~l~~~~~~~~~-~~~a~~~~~~~ 165 (201)
++++|.+|..+|+ +++|....++.
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 9999999999995 48886544443
No 128
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.72 E-value=5.5e-17 Score=103.12 Aligned_cols=106 Identities=14% Similarity=0.030 Sum_probs=99.6
Q ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--CHHHHHH
Q psy12642 30 DETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPH--NHLLHQR 107 (201)
Q Consensus 30 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~ 107 (201)
+|+++.++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+.++++++..+|. +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 57788888999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHc-CCcccHHHHHHHHHHHHcCCccc
Q psy12642 108 YADILYTQ-GGLENIELAISHYLMAINLNEKN 138 (201)
Q Consensus 108 la~~~~~~-~~~~~~~~A~~~~~~al~~~p~~ 138 (201)
+|.++... | ++++|++++++++...|.+
T Consensus 82 l~~~~~~~~~---~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 82 KADALRYIEG---KEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHTTCSS---CSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhC---CHHHHHHHHHHHhhcccCC
Confidence 99999999 9 9999999999999998875
No 129
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.72 E-value=1.9e-16 Score=111.57 Aligned_cols=124 Identities=11% Similarity=-0.012 Sum_probs=109.6
Q ss_pred HHHHhhhhccCHHHHHHHHHHHHhcCcccH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH
Q psy12642 5 VYIIGCFHFFRYEEALEHLETIIKIDETNT----------------AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ 68 (201)
Q Consensus 5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~----------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~ 68 (201)
..+..++..|++++|+..|++++...|.++ .++..+|.++...|++++|+..+++++..+|+++
T Consensus 43 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 122 (198)
T 2fbn_A 43 EEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNV 122 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccH
Confidence 356678899999999999999999998887 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHH-HHHHHH
Q psy12642 69 ETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAI-SHYLMA 131 (201)
Q Consensus 69 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~-~~~~~a 131 (201)
.+++.+|.++...|++++|+.+|++++.++|+++.++..++.++...+ +..++. ..|.+.
T Consensus 123 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 123 KALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK---EARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH---HHHC---------
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999888 776665 333333
No 130
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.72 E-value=7.4e-16 Score=99.53 Aligned_cols=112 Identities=21% Similarity=0.268 Sum_probs=105.9
Q ss_pred HHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Q psy12642 5 VYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDY 84 (201)
Q Consensus 5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 84 (201)
..+..+...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++
T Consensus 14 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 93 (125)
T 1na0_A 14 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY 93 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCH
Confidence 45667888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcC
Q psy12642 85 AKAVFCMEELFLHHPHNHLLHQRYADILYTQG 116 (201)
Q Consensus 85 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 116 (201)
++|+..+++++..+|+++.++..++.++...|
T Consensus 94 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 94 DEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999877654
No 131
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.72 E-value=3.1e-16 Score=111.27 Aligned_cols=127 Identities=12% Similarity=0.052 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q psy12642 34 TAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILY 113 (201)
Q Consensus 34 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 113 (201)
...++.+|.++...|++++|+..+++++ +.++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++.
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 3456788999999999999999999985 3378999999999999999999999999999999999999999999999
Q ss_pred HcCCcccHHHHHHHHHHHHcCCcccH----------------HHHHHHHHHHHHhhhhhhhhhhhHHHH
Q psy12642 114 TQGGLENIELAISHYLMAINLNEKNI----------------RALYGLALSCHQVLTSAKCSAAKKKEI 166 (201)
Q Consensus 114 ~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~ 166 (201)
..| ++++|+..|+++++..|++. .++++++.++...|++++|.....+..
T Consensus 83 ~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 83 QTE---KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HTT---CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred Hcc---cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999 99999999999999777655 999999999999999999977555443
No 132
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.72 E-value=1.3e-16 Score=108.85 Aligned_cols=112 Identities=14% Similarity=0.084 Sum_probs=102.8
Q ss_pred HHHHhhhhccCHHHHHHHHHHHHhc------------------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q psy12642 5 VYIIGCFHFFRYEEALEHLETIIKI------------------DETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMT 66 (201)
Q Consensus 5 ~~~~~~~~~~~~~~A~~~~~~~l~~------------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~ 66 (201)
-.+..++..|+|++|+..|.+++.. +|.+..++..+|.++..+|++++|+..+.+++..+|+
T Consensus 16 ~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~ 95 (162)
T 3rkv_A 16 QKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREET 95 (162)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc
Confidence 3567789999999999999999998 7788899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCH-HHHHHHHHHHHHcC
Q psy12642 67 DQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNH-LLHQRYADILYTQG 116 (201)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~la~~~~~~~ 116 (201)
++.+++.+|.++..+|++++|+..|++++.++|+++ .+...++.+.....
T Consensus 96 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~ 146 (162)
T 3rkv_A 96 NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRA 146 (162)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998 66777777665544
No 133
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.71 E-value=3.1e-16 Score=103.02 Aligned_cols=103 Identities=13% Similarity=0.141 Sum_probs=92.5
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-------HHHHHHHHHH
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ-------ETWQELCDLY 78 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-------~~~~~l~~~~ 78 (201)
.+..++..|+|++|+..|+++++.+|+++.++..+|.++..+|++++|+..++++++++|++. .++..+|.++
T Consensus 14 lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~ 93 (127)
T 4gcn_A 14 LGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAF 93 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999999999999988663 5788899999
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCHHHHHHHH
Q psy12642 79 LSEGDYAKAVFCMEELFLHHPHNHLLHQRYA 109 (201)
Q Consensus 79 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la 109 (201)
..+|++++|+.+|++++...|+ +.....+.
T Consensus 94 ~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~ 123 (127)
T 4gcn_A 94 QKQNDLSLAVQWFHRSLSEFRD-PELVKKVK 123 (127)
T ss_dssp HHTTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhCcC-HHHHHHHH
Confidence 9999999999999999998885 55544443
No 134
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.71 E-value=2.8e-17 Score=130.83 Aligned_cols=129 Identities=14% Similarity=0.154 Sum_probs=116.6
Q ss_pred HHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHH
Q psy12642 7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAK 86 (201)
Q Consensus 7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 86 (201)
+..++..|++++|+..|+++++.+|++..++..+|.++..+|++++|+..++++++.+|+++.++..+|.+|..+|++++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHH--HHHcCCcccHHHHHHHHH-----------HHHcCCccc
Q psy12642 87 AVFCMEELFLHHPHNHLLHQRYADI--LYTQGGLENIELAISHYL-----------MAINLNEKN 138 (201)
Q Consensus 87 A~~~~~~al~~~~~~~~~~~~la~~--~~~~~~~~~~~~A~~~~~-----------~al~~~p~~ 138 (201)
|+..|+++++.+|++..++..++.+ +...+ ++++|++.++ +++.++|+.
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQK---AFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHH---HHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH---HHHHHhccccccchhHhhhhhhhccccccc
Confidence 9999999999999999999999988 88889 9999999999 888887754
No 135
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.71 E-value=1.2e-15 Score=99.73 Aligned_cols=114 Identities=10% Similarity=0.045 Sum_probs=103.2
Q ss_pred hHHHHHhhhhccCHHHHHHHHHHHHhcCcccH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHH
Q psy12642 3 PIVYIIGCFHFFRYEEALEHLETIIKIDETNT---AARKRKICILKAKNKIPEAIKELTEYLKKFMTD---QETWQELCD 76 (201)
Q Consensus 3 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~ 76 (201)
.+..+..++..|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..+++++..+|++ +.+++.+|.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 34567788999999999999999999999988 799999999999999999999999999999999 899999999
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcC
Q psy12642 77 LYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQG 116 (201)
Q Consensus 77 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 116 (201)
++..+|++++|+..|++++...|+++.+......+....+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~ 124 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL 124 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence 9999999999999999999999999988777666554443
No 136
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.70 E-value=7.6e-17 Score=122.99 Aligned_cols=131 Identities=11% Similarity=0.004 Sum_probs=68.9
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcCcccH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKIDETNT-----------------AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ 68 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~-----------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~ 68 (201)
.+..++..|+|++|+..|++++...|.+. .++..+|.++..+|++++|+..+++++..+|++.
T Consensus 185 ~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~ 264 (338)
T 2if4_A 185 DGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNP 264 (338)
T ss_dssp HHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 45567778888888888888888887766 3677777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH-HcCCcccHHHHHHHHHHHHcCCcccH
Q psy12642 69 ETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILY-TQGGLENIELAISHYLMAINLNEKNI 139 (201)
Q Consensus 69 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~~~~A~~~~~~al~~~p~~~ 139 (201)
.+++.+|.+|..+|++++|+.+|++++.++|++..++..++.+.. ..+ ..+.+...|.+++...|+++
T Consensus 265 ~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~---~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 265 KALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKA---LYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhCCCCCCC
Confidence 777777777777777777777777777777777777777776633 334 56667777777777777654
No 137
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.70 E-value=1.5e-16 Score=109.99 Aligned_cols=119 Identities=18% Similarity=0.239 Sum_probs=107.4
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHH-HHHcCCcccH-
Q psy12642 44 LKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADI-LYTQGGLENI- 121 (201)
Q Consensus 44 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~-~~~~~~~~~~- 121 (201)
+...|++++|+..+++++..+|+++.+|..+|.++...|++++|+.+|++++..+|+++.++..+|.+ +...| ++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~---~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQAS---QHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT---TCC
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC---Ccc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999 77889 88
Q ss_pred -HHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHH
Q psy12642 122 -ELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKE 165 (201)
Q Consensus 122 -~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 165 (201)
++|+..|+++++.+|+++.+++.++.++...|++++|.....+.
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 141 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKV 141 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999997655443
No 138
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.70 E-value=4.9e-16 Score=119.90 Aligned_cols=124 Identities=15% Similarity=0.008 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q psy12642 34 TAARKRKICILKAKNKIPEAIKELTEYLK----------------KFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLH 97 (201)
Q Consensus 34 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----------------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 97 (201)
...+..+|..+...|++++|+..|+++++ ..|.+..++..+|.+|..+|++++|+.++++++..
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 46688899999999999999999999998 77788899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642 98 HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSA 160 (201)
Q Consensus 98 ~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 160 (201)
+|+++.+++.+|.++...+ ++++|+..|+++++++|++..++..++.++...++..++..
T Consensus 303 ~p~~~~a~~~lg~~~~~~g---~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLK---EYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 99999999999999999999999999999999998877743
No 139
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.70 E-value=5.3e-16 Score=102.52 Aligned_cols=112 Identities=10% Similarity=-0.044 Sum_probs=102.1
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD 83 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 83 (201)
...+..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.+++.+|.++...|+
T Consensus 13 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 92 (137)
T 3q49_B 13 KEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMES 92 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhh
Confidence 44667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCC-----CHHHHHHHHHHHHHc
Q psy12642 84 YAKAVFCMEELFLHHPH-----NHLLHQRYADILYTQ 115 (201)
Q Consensus 84 ~~~A~~~~~~al~~~~~-----~~~~~~~la~~~~~~ 115 (201)
+++|+.+|++++..+|+ +..+...+..+....
T Consensus 93 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~ 129 (137)
T 3q49_B 93 YDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 129 (137)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887 666666666654443
No 140
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.70 E-value=2.7e-15 Score=112.52 Aligned_cols=146 Identities=15% Similarity=0.037 Sum_probs=135.5
Q ss_pred HHHhhhhccCH-HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhcCCCHHHHHHHHHHH----
Q psy12642 6 YIIGCFHFFRY-EEALEHLETIIKIDETNTAARKRKICILKAKN--KIPEAIKELTEYLKKFMTDQETWQELCDLY---- 78 (201)
Q Consensus 6 ~~~~~~~~~~~-~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~---- 78 (201)
++....+.|.+ ++|+..+++++..+|++..+|..++.++...+ ++++++..+..++..+|++..+|...+.+.
T Consensus 38 ~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~ 117 (306)
T 3dra_A 38 LLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIM 117 (306)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHH
Confidence 33444555665 68999999999999999999999999999999 999999999999999999999999999988
Q ss_pred Hhc---CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHH--HHHHHHHHHHcCCcccHHHHHHHHHHHHHhh
Q psy12642 79 LSE---GDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIE--LAISHYLMAINLNEKNIRALYGLALSCHQVL 153 (201)
Q Consensus 79 ~~~---~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 153 (201)
... +++++++.++++++..+|.|..+|...+.++...+ .++ ++++++.++++.+|.|..+|.+.+.+....+
T Consensus 118 ~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~---~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~ 194 (306)
T 3dra_A 118 ELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFD---LHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKK 194 (306)
T ss_dssp HHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSG
T ss_pred HhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc---ccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Confidence 666 78999999999999999999999999999999999 888 9999999999999999999999999999887
Q ss_pred h
Q psy12642 154 T 154 (201)
Q Consensus 154 ~ 154 (201)
.
T Consensus 195 ~ 195 (306)
T 3dra_A 195 H 195 (306)
T ss_dssp G
T ss_pred c
Confidence 6
No 141
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.69 E-value=1.1e-15 Score=122.89 Aligned_cols=151 Identities=8% Similarity=-0.042 Sum_probs=136.4
Q ss_pred ccCHH-------HHHHHHHHHHh-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHhcCC
Q psy12642 13 FFRYE-------EALEHLETIIK-IDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ-ETWQELCDLYLSEGD 83 (201)
Q Consensus 13 ~~~~~-------~A~~~~~~~l~-~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~~~ 83 (201)
.|+++ +|+..|+++++ ..|++..+|..++.++...|++++|...|++++...|.++ .+|..+|.++.+.|+
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 371 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG 371 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcC
Confidence 68887 99999999997 7999999999999999999999999999999999999986 699999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHH-HHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhh
Q psy12642 84 YAKAVFCMEELFLHHPHNHLLHQRYADIL-YTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAK 162 (201)
Q Consensus 84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~-~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 162 (201)
+++|...|++++...|.+...+...+.+. ...| ++++|+..|+++++..|+++..|..++.++...|+.++|+...
T Consensus 372 ~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~---~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~ 448 (530)
T 2ooe_A 372 IKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK---DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLF 448 (530)
T ss_dssp HHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHH
Confidence 99999999999999988877777666553 3578 9999999999999999999999999999999999999997765
Q ss_pred HHHH
Q psy12642 163 KKEI 166 (201)
Q Consensus 163 ~~~~ 166 (201)
.+..
T Consensus 449 ~~al 452 (530)
T 2ooe_A 449 ERVL 452 (530)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 142
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.69 E-value=1.8e-16 Score=106.88 Aligned_cols=102 Identities=14% Similarity=0.039 Sum_probs=93.7
Q ss_pred HHHHhhhhccCHHHHHHHHHHHHhcCcc-------cHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHh-------cC
Q psy12642 5 VYIIGCFHFFRYEEALEHLETIIKIDET-------NTA-----ARKRKICILKAKNKIPEAIKELTEYLKK-------FM 65 (201)
Q Consensus 5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~-------~~~-----~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------~p 65 (201)
-.+..++..|+|++|+..|+++++.+|+ +.. +|..+|.++..+|++++|+..+++++.+ +|
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p 95 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 95 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence 3556789999999999999999999999 444 9999999999999999999999999999 99
Q ss_pred CCHHHH----HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHH
Q psy12642 66 TDQETW----QELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQ 106 (201)
Q Consensus 66 ~~~~~~----~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 106 (201)
++..+| +.+|.++..+|++++|+.+|++++.++|++....-
T Consensus 96 d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~ 140 (159)
T 2hr2_A 96 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETP 140 (159)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCT
T ss_pred chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 999999 99999999999999999999999999998765433
No 143
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.69 E-value=1.1e-16 Score=103.44 Aligned_cols=100 Identities=13% Similarity=0.076 Sum_probs=78.3
Q ss_pred ccCHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHH
Q psy12642 13 FFRYEEALEHLETIIKI---DETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVF 89 (201)
Q Consensus 13 ~~~~~~A~~~~~~~l~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 89 (201)
.|++++|+..|+++++. +|+++.++..+|.++...|++++|+..++++++.+|+++.+++.+|.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 57888888888888888 588888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHH
Q psy12642 90 CMEELFLHHPHNHLLHQRYADIL 112 (201)
Q Consensus 90 ~~~~al~~~~~~~~~~~~la~~~ 112 (201)
.+++++...|+++........+.
T Consensus 83 ~~~~al~~~p~~~~~~~~~~ai~ 105 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQSYKQAIL 105 (117)
T ss_dssp HHHHHHHHHCCCHHHHHTHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHH
Confidence 88888888888876654444333
No 144
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.69 E-value=6e-16 Score=119.47 Aligned_cols=193 Identities=10% Similarity=-0.008 Sum_probs=154.5
Q ss_pred HHHHhhhhccCHHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHH
Q psy12642 5 VYIIGCFHFFRYEEALEHLETIIKID-------ETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD------QETW 71 (201)
Q Consensus 5 ~~~~~~~~~~~~~~A~~~~~~~l~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~ 71 (201)
..+..+...|++++|+.+++++++.. +....++..+|.++...|++++|+..+++++...|.. ..++
T Consensus 148 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 227 (383)
T 3ulq_A 148 KMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTL 227 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 35566888999999999999999974 3345789999999999999999999999999876543 2588
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhh-----cC-CCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCC-----cccHH
Q psy12642 72 QELCDLYLSEGDYAKAVFCMEELFL-----HH-PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLN-----EKNIR 140 (201)
Q Consensus 72 ~~l~~~~~~~~~~~~A~~~~~~al~-----~~-~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~ 140 (201)
..+|.+|..+|++++|+.++++++. .+ |..+.++..+|.++...| ++++|+.++++++++. |....
T Consensus 228 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~ 304 (383)
T 3ulq_A 228 YNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLG---KIDKAHEYHSKGMAYSQKAGDVIYLS 304 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 8999999999999999999999998 46 777889999999999999 9999999999999884 44445
Q ss_pred HHHHHHHHHHHhhh---hhhhhhhhHHHH-HHHhHHHHHHHHHHHHhhhcchHHHHHHHhhccC
Q psy12642 141 ALYGLALSCHQVLT---SAKCSAAKKKEI-SKQMMWVSKHLARQYEEQQGNTETLTELMSALQV 200 (201)
Q Consensus 141 ~~~~l~~~~~~~~~---~~~a~~~~~~~~-~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~ 200 (201)
.+..++.++...|+ ..+|....++.. ......+...+...|..+...++++..+.+++.+
T Consensus 305 ~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 305 EFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 56789999999888 555544332221 1223334556888888888888877777666543
No 145
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.69 E-value=5.6e-16 Score=116.57 Aligned_cols=154 Identities=12% Similarity=0.086 Sum_probs=131.2
Q ss_pred HhhhhccCHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--C----HHHHHHHH
Q psy12642 8 IGCFHFFRYEEALEHLETIIKIDETN------TAARKRKICILKAKNKIPEAIKELTEYLKKFMT--D----QETWQELC 75 (201)
Q Consensus 8 ~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~--~----~~~~~~l~ 75 (201)
..+...|++++|+..|.++++..+.. ..++..+|.+|..+|++++|+..+++++.+.+. + ..++..+|
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44677899999999999999876532 568889999999999999999999999987543 2 45788899
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCC------HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCccc------HHHHH
Q psy12642 76 DLYLSEGDYAKAVFCMEELFLHHPHN------HLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN------IRALY 143 (201)
Q Consensus 76 ~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~ 143 (201)
.+|.. |++++|+.+|++++.+.|.. ..++..+|.++...| ++++|+.+|++++++.|++ ..++.
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 199 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQ---KFDEAAASLQKEKSMYKEMENYPTCYKKCI 199 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Confidence 99998 99999999999999887643 567899999999999 9999999999999987653 34788
Q ss_pred HHHHHHHHhhhhhhhhhhhHHH
Q psy12642 144 GLALSCHQVLTSAKCSAAKKKE 165 (201)
Q Consensus 144 ~l~~~~~~~~~~~~a~~~~~~~ 165 (201)
.++.++..+|++.+|.....+.
T Consensus 200 ~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 200 AQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 8999999999999997765554
No 146
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.4e-15 Score=100.31 Aligned_cols=111 Identities=14% Similarity=0.098 Sum_probs=103.7
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETN---TAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLS 80 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 80 (201)
...+..++..|++++|+..|+++++.+|++ ..++..+|.++...|++++|+..+++++..+|+++.+++.+|.++..
T Consensus 32 ~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 111 (148)
T 2dba_A 32 RKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEK 111 (148)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHH
Confidence 345677889999999999999999999998 89999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q psy12642 81 EGDYAKAVFCMEELFLHHPHNHLLHQRYADILYT 114 (201)
Q Consensus 81 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 114 (201)
.|++++|+.+|++++..+|++..++..++.+...
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 112 LGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 9999999999999999999999999888877543
No 147
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.67 E-value=8e-17 Score=128.19 Aligned_cols=128 Identities=12% Similarity=0.004 Sum_probs=116.1
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q psy12642 33 NTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADIL 112 (201)
Q Consensus 33 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 112 (201)
.+..+..+|.++...|++++|+..++++++.+|++..++..+|.+|..+|++++|+..+++++.++|+++.++..+|.++
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 84 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 84 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34455667888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHH--HHHhhhhhhhhhhhH
Q psy12642 113 YTQGGLENIELAISHYLMAINLNEKNIRALYGLALS--CHQVLTSAKCSAAKK 163 (201)
Q Consensus 113 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 163 (201)
...| ++++|+..|+++++++|++..++..++.+ +...|++++|.....
T Consensus 85 ~~~g---~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 85 MALG---KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHT---CHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999 99999999999999999999999999998 888899999966433
No 148
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.67 E-value=5.6e-15 Score=105.37 Aligned_cols=159 Identities=14% Similarity=0.043 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC----CHHHHHHHHH
Q psy12642 17 EEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG----DYAKAVFCME 92 (201)
Q Consensus 17 ~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~----~~~~A~~~~~ 92 (201)
.+|+.+|+++.+. .++.+++.+|.++...+++++|+.+|+++.+ ++++.+++.+|.+|.. + ++++|+.+|+
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAA--QGDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--TTCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 3578889998875 6899999999999999999999999999987 4689999999999998 7 9999999999
Q ss_pred HHhhcCCCCHHHHHHHHHHHHH----cCCcccHHHHHHHHHHHHcCCc--ccHHHHHHHHHHHHH----hhhhhhhhhhh
Q psy12642 93 ELFLHHPHNHLLHQRYADILYT----QGGLENIELAISHYLMAINLNE--KNIRALYGLALSCHQ----VLTSAKCSAAK 162 (201)
Q Consensus 93 ~al~~~~~~~~~~~~la~~~~~----~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~----~~~~~~a~~~~ 162 (201)
+++ ++.++.+++.+|.++.. .+ ++++|+.+|+++++..| +++.+++.|+.+|.. .++..+|....
T Consensus 78 ~A~--~~g~~~a~~~Lg~~y~~g~g~~~---d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 78 KAV--EAGSKSGEIVLARVLVNRQAGAT---DVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHH--HTTCHHHHHHHHHHHTCGGGSSC---CHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHH--HCCCHHHHHHHHHHHHcCCCCcc---CHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 996 46789999999999987 66 99999999999999998 569999999999999 88888887766
Q ss_pred HHHHHH-HhHHHHHHHHHHHHhhh
Q psy12642 163 KKEISK-QMMWVSKHLARQYEEQQ 185 (201)
Q Consensus 163 ~~~~~~-~~~~~~~~l~~~y~~~~ 185 (201)
.+.... -...+...|...|....
T Consensus 153 ~~A~~~~~~~~a~~~Lg~~y~~g~ 176 (212)
T 3rjv_A 153 KGSSSLSRTGYAEYWAGMMFQQGE 176 (212)
T ss_dssp HHHHHTSCTTHHHHHHHHHHHHCB
T ss_pred HHHHHcCCCHHHHHHHHHHHHcCC
Confidence 666543 34456667788887654
No 149
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.67 E-value=1.5e-15 Score=120.34 Aligned_cols=125 Identities=12% Similarity=-0.020 Sum_probs=110.9
Q ss_pred HHHHhhhhccCHHHHHHHHHHHHhcCccc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH
Q psy12642 5 VYIIGCFHFFRYEEALEHLETIIKIDETN---------------TAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQE 69 (201)
Q Consensus 5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 69 (201)
..+..++..|+|++|+..|+++++.+|.+ ..++..+|.++..+|++++|+..+++++.++|+++.
T Consensus 273 ~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~ 352 (457)
T 1kt0_A 273 EKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEK 352 (457)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH
Confidence 35667889999999999999999999988 799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHH-HHHHHH
Q psy12642 70 TWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAIS-HYLMAI 132 (201)
Q Consensus 70 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~-~~~~al 132 (201)
+++.+|.+|..+|++++|+..|++++.++|++..++..++.++...+ +++++.+ .|.+.+
T Consensus 353 a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~---~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 353 GLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAK---EHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHH---HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 8887764 344333
No 150
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.67 E-value=1.3e-16 Score=103.16 Aligned_cols=103 Identities=17% Similarity=0.130 Sum_probs=89.9
Q ss_pred HcCCHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHH
Q psy12642 46 AKNKIPEAIKELTEYLKK---FMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIE 122 (201)
Q Consensus 46 ~~~~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~ 122 (201)
.+|++++|+..|+++++. +|+++.++..+|.+|..+|++++|+.+|++++..+|+++.+++.+|.++...| +++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~ 78 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLG---RYE 78 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT---CHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC---CHH
Confidence 468999999999999999 68889999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHcCCcccHHHHHHHHHHHHH
Q psy12642 123 LAISHYLMAINLNEKNIRALYGLALSCHQ 151 (201)
Q Consensus 123 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 151 (201)
+|+..|++++...|+++........+...
T Consensus 79 ~A~~~~~~al~~~p~~~~~~~~~~ai~~~ 107 (117)
T 3k9i_A 79 QGVELLLKIIAETSDDETIQSYKQAILFY 107 (117)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 99999999999999988765544444333
No 151
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.67 E-value=1.8e-15 Score=106.23 Aligned_cols=153 Identities=14% Similarity=0.116 Sum_probs=123.4
Q ss_pred hhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------cCCCHHHHHHHHHHHHhcCC
Q psy12642 10 CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKK------FMTDQETWQELCDLYLSEGD 83 (201)
Q Consensus 10 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~~~ 83 (201)
++..|++++|.+.++.+....+....++..+|.++...|++++|+..+++++.. .|....++..+|.++...|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 456899999999666655544477899999999999999999999999999983 34446788999999999999
Q ss_pred HHHHHHHHHHHhhc---CCCC----HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc------cHHHHHHHHHHHH
Q psy12642 84 YAKAVFCMEELFLH---HPHN----HLLHQRYADILYTQGGLENIELAISHYLMAINLNEK------NIRALYGLALSCH 150 (201)
Q Consensus 84 ~~~A~~~~~~al~~---~~~~----~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~ 150 (201)
+++|+.++++++.. .+++ ..++..+|.++...| ++++|+.++++++...+. ...++..++.++.
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 158 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFG---DLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQ 158 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 99999999999987 4433 456889999999999 999999999999976432 2345689999999
Q ss_pred HhhhhhhhhhhhHHH
Q psy12642 151 QVLTSAKCSAAKKKE 165 (201)
Q Consensus 151 ~~~~~~~a~~~~~~~ 165 (201)
..|++++|.....+.
T Consensus 159 ~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 159 QEKNLLEAQQHWLRA 173 (203)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHH
Confidence 999999996654433
No 152
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=2e-15 Score=122.41 Aligned_cols=142 Identities=8% Similarity=0.021 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC-CHHHHHHHHH
Q psy12642 16 YEEALEHLETIIKIDETNTAARKRKICILKAKN--KIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG-DYAKAVFCME 92 (201)
Q Consensus 16 ~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~ 92 (201)
+++++.+++++++.+|.+..+|..++.++...+ ++++++..+.++++.+|.+..+|...+.+....| .++++++++.
T Consensus 89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~ 168 (567)
T 1dce_A 89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 168 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHH
Confidence 999999999999999999999999999999999 7799999999999999999999999999999999 9999999999
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHcCC-----------cccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhh
Q psy12642 93 ELFLHHPHNHLLHQRYADILYTQGG-----------LENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAK 157 (201)
Q Consensus 93 ~al~~~~~~~~~~~~la~~~~~~~~-----------~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 157 (201)
+++..+|.|..+|..++.++..... ...++++++++.+++.++|++..+|++++.++...+...+
T Consensus 169 ~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 169 SLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp TTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 9999999999999999999888521 1278999999999999999999999999999998877444
No 153
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.66 E-value=8.2e-16 Score=114.35 Aligned_cols=105 Identities=13% Similarity=0.018 Sum_probs=101.7
Q ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q psy12642 31 ETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYAD 110 (201)
Q Consensus 31 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 110 (201)
|.++..+..+|..+...|++++|+..+++++..+|+++.++..+|.+|...|++++|+..+++++..+|+++.+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCcccHHHHHHHHHHHHcCCccc
Q psy12642 111 ILYTQGGLENIELAISHYLMAINLNEKN 138 (201)
Q Consensus 111 ~~~~~~~~~~~~~A~~~~~~al~~~p~~ 138 (201)
++...| ++++|+..|+++++++|++
T Consensus 81 ~~~~~g---~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 81 CQLEME---SYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHcC---CHHHHHHHHHHHHHhCccc
Confidence 999999 9999999999999999975
No 154
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.66 E-value=7.5e-15 Score=118.09 Aligned_cols=162 Identities=9% Similarity=-0.004 Sum_probs=139.2
Q ss_pred hHHHHHhhhhccCHHHHHHHHHHHHhcCcccH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH-HHh
Q psy12642 3 PIVYIIGCFHFFRYEEALEHLETIIKIDETNT-AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDL-YLS 80 (201)
Q Consensus 3 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~ 80 (201)
++.++..+...|++++|...|+++++..|.++ .+|..++.++...|++++|+..|+++++..|.+...+...+.+ +..
T Consensus 324 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~ 403 (530)
T 2ooe_A 324 YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC 403 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 34566677889999999999999999999885 6999999999999999999999999999988887777766655 346
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccH----HHHHHHHHHHHHhhhhh
Q psy12642 81 EGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNI----RALYGLALSCHQVLTSA 156 (201)
Q Consensus 81 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~~~~~ 156 (201)
.|++++|...|+++++.+|+++.+|..++.++...| +.++|...|++++...|.++ ..|..........|+.+
T Consensus 404 ~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g---~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~ 480 (530)
T 2ooe_A 404 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN---EDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA 480 (530)
T ss_dssp TCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTT---CHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHH
T ss_pred cCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCC---CHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999999 99999999999999876544 37777788888889888
Q ss_pred hhhhhhHHHHH
Q psy12642 157 KCSAAKKKEIS 167 (201)
Q Consensus 157 ~a~~~~~~~~~ 167 (201)
.+.....+...
T Consensus 481 ~~~~~~~r~~~ 491 (530)
T 2ooe_A 481 SILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77554444443
No 155
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.66 E-value=6.5e-16 Score=104.02 Aligned_cols=93 Identities=17% Similarity=0.138 Sum_probs=65.1
Q ss_pred hhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q psy12642 10 CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIP----------EAIKELTEYLKKFMTDQETWQELCDLYL 79 (201)
Q Consensus 10 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~----------~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 79 (201)
..+.+.|++|+..++++++.+|+++.++..+|.++...++++ +|+..|+++++++|++..+|+.+|.+|.
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 345567888888888888888888888888888888777654 7777777777777777777777777776
Q ss_pred hcC-----------CHHHHHHHHHHHhhcCCCCH
Q psy12642 80 SEG-----------DYAKAVFCMEELFLHHPHNH 102 (201)
Q Consensus 80 ~~~-----------~~~~A~~~~~~al~~~~~~~ 102 (201)
.+| ++++|+.+|++++.++|++.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 654 45555555555555555543
No 156
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.65 E-value=5.8e-16 Score=104.23 Aligned_cols=101 Identities=15% Similarity=0.124 Sum_probs=88.9
Q ss_pred HcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHc
Q psy12642 46 AKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDY----------AKAVFCMEELFLHHPHNHLLHQRYADILYTQ 115 (201)
Q Consensus 46 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 115 (201)
+.+.+++|+..++++++.+|+++++|..+|.++...+++ ++|+..|+++++++|++..+++++|.+|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 456789999999999999999999999999999998875 5999999999999999999999999999876
Q ss_pred CC--------cccHHHHHHHHHHHHcCCcccHHHHHHHH
Q psy12642 116 GG--------LENIELAISHYLMAINLNEKNIRALYGLA 146 (201)
Q Consensus 116 ~~--------~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 146 (201)
|. ..++++|+.+|+++++++|++...+..+.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~ 132 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE 132 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 30 01799999999999999999876555444
No 157
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.65 E-value=2.3e-14 Score=108.23 Aligned_cols=144 Identities=11% Similarity=0.018 Sum_probs=132.7
Q ss_pred HHhhhhccCHH-HHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhcCCCHHHHHHHH
Q psy12642 7 IIGCFHFFRYE-EALEHLETIIKIDETNTAARKRKICILKAKNK----------IPEAIKELTEYLKKFMTDQETWQELC 75 (201)
Q Consensus 7 ~~~~~~~~~~~-~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~~~~~~p~~~~~~~~l~ 75 (201)
+....+.|.++ +|+..+++++..+|.+..+|..++.+....+. +++++.++..++..+|.+..+|...+
T Consensus 36 ~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~ 115 (331)
T 3dss_A 36 VFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRC 115 (331)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34455667776 89999999999999999999999999988766 68999999999999999999999999
Q ss_pred HHHHhcC--CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCccc-HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHh
Q psy12642 76 DLYLSEG--DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLEN-IELAISHYLMAINLNEKNIRALYGLALSCHQV 152 (201)
Q Consensus 76 ~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 152 (201)
.+....| .+++++.++.+++..+|.|..+|...+.+....+ . ++++++++.+++..+|.+..+|.+++.+...+
T Consensus 116 wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~---~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 116 WLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAA---VAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 192 (331)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred HHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC---cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 9999998 4999999999999999999999999999999999 7 69999999999999999999999999999988
Q ss_pred h
Q psy12642 153 L 153 (201)
Q Consensus 153 ~ 153 (201)
+
T Consensus 193 ~ 193 (331)
T 3dss_A 193 H 193 (331)
T ss_dssp S
T ss_pred h
Confidence 4
No 158
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.65 E-value=7e-18 Score=128.73 Aligned_cols=123 Identities=13% Similarity=0.040 Sum_probs=96.9
Q ss_pred hcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-----------------HHHHHHHHHHHhcCCHHHHHHH
Q psy12642 28 KIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ-----------------ETWQELCDLYLSEGDYAKAVFC 90 (201)
Q Consensus 28 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-----------------~~~~~l~~~~~~~~~~~~A~~~ 90 (201)
+..+.....+..+|..++..|++++|+..|++++...|++. .++..+|.+|..+|++++|+.+
T Consensus 173 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~ 252 (338)
T 2if4_A 173 EERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGH 252 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34456678889999999999999999999999999999877 4899999999999999999999
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhh
Q psy12642 91 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL 153 (201)
Q Consensus 91 ~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 153 (201)
+++++..+|+++.+++.+|.++...| ++++|+..|+++++++|++..++..++.+.....
T Consensus 253 ~~~al~~~p~~~~a~~~lg~a~~~~g---~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~ 312 (338)
T 2if4_A 253 CNIVLTEEEKNPKALFRRGKAKAELG---QMDSARDDFRKAQKYAPDDKAIRRELRALAEQEK 312 (338)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHTTT---CHHHHHHHHHHTTC--------------------
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 9999999999999999999999999998865543
No 159
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.64 E-value=5.2e-15 Score=114.17 Aligned_cols=119 Identities=8% Similarity=0.009 Sum_probs=112.0
Q ss_pred HHHHhhhhccCHHHHHHHHHHHHh----------------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH
Q psy12642 5 VYIIGCFHFFRYEEALEHLETIIK----------------IDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ 68 (201)
Q Consensus 5 ~~~~~~~~~~~~~~A~~~~~~~l~----------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~ 68 (201)
..+..++..|++++|+..|+++++ .+|.+..++..+|.++..+|++++|+..++++++.+|+++
T Consensus 228 ~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~ 307 (370)
T 1ihg_A 228 NIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNT 307 (370)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhH
Confidence 356678899999999999999998 7888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHH
Q psy12642 69 ETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAIS 126 (201)
Q Consensus 69 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~ 126 (201)
.+++.+|.+|..+|++++|+..|++++.++|++..++..++.++...+ +++++.+
T Consensus 308 ~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~---~~~~a~k 362 (370)
T 1ihg_A 308 KALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK---AQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH---HHHHHHH
Confidence 999999999999999999999999999999999999999999999888 8777754
No 160
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.63 E-value=6.7e-15 Score=95.83 Aligned_cols=112 Identities=11% Similarity=0.136 Sum_probs=102.3
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-------HHHHHHHHH
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD-------QETWQELCD 76 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~ 76 (201)
...+..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++...|++ +.++..+|.
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 87 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHH
Confidence 3456678889999999999999999999999999999999999999999999999999998877 889999999
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcC
Q psy12642 77 LYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQG 116 (201)
Q Consensus 77 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 116 (201)
++...|++++|+.+|++++...| ++.....++.+....+
T Consensus 88 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 88 SYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 5888888887766544
No 161
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.63 E-value=2.9e-14 Score=115.62 Aligned_cols=145 Identities=12% Similarity=0.008 Sum_probs=133.2
Q ss_pred hhhhccCH-HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q psy12642 9 GCFHFFRY-EEALEHLETIIKIDETNTAARKRKICILKAKNK----------IPEAIKELTEYLKKFMTDQETWQELCDL 77 (201)
Q Consensus 9 ~~~~~~~~-~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 77 (201)
.....|.+ ++|++.+++++..+|.+..+|..++.++...|+ +++++..+++++..+|++..+|...+.+
T Consensus 37 ~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 37 QKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL 116 (567)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34444444 577999999999999999999999999999988 9999999999999999999999999999
Q ss_pred HHhcC--CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhh
Q psy12642 78 YLSEG--DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTS 155 (201)
Q Consensus 78 ~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 155 (201)
....| ++++++.+++++++.+|.|..+|...+.+....+. .++++++++.++++.+|.+..+|.+++.++..++..
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~--~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAV--APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCC--CHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCC
T ss_pred HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccc
Confidence 99999 77999999999999999999999999999988773 589999999999999999999999999999987544
No 162
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.63 E-value=7.4e-15 Score=93.11 Aligned_cols=100 Identities=17% Similarity=0.182 Sum_probs=94.3
Q ss_pred hHHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHh
Q psy12642 3 PIVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMT--DQETWQELCDLYLS 80 (201)
Q Consensus 3 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~ 80 (201)
....+..++..|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++..|. +..++..+|.++..
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~ 88 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRY 88 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHH
Confidence 3446677889999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred c-CCHHHHHHHHHHHhhcCCCCH
Q psy12642 81 E-GDYAKAVFCMEELFLHHPHNH 102 (201)
Q Consensus 81 ~-~~~~~A~~~~~~al~~~~~~~ 102 (201)
. |++++|+.++++++...|.++
T Consensus 89 ~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 89 IEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp CSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HhCCHHHHHHHHHHHhhcccCCC
Confidence 9 999999999999999998753
No 163
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.63 E-value=2.4e-13 Score=102.69 Aligned_cols=137 Identities=9% Similarity=0.015 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC-HHHHHHHHH
Q psy12642 16 YEEALEHLETIIKIDETNTAARKRKICILKAKNK--IPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD-YAKAVFCME 92 (201)
Q Consensus 16 ~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~ 92 (201)
+++++.+++.++..+|.+..+|..++.++...++ +++++.++.+++..+|.+..+|...+.+....|. +++++.++.
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 7899999999999999999999999999999984 8999999999999999999999999999999998 699999999
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHcCC-----------cccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHh
Q psy12642 93 ELFLHHPHNHLLHQRYADILYTQGG-----------LENIELAISHYLMAINLNEKNIRALYGLALSCHQV 152 (201)
Q Consensus 93 ~al~~~~~~~~~~~~la~~~~~~~~-----------~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 152 (201)
+++..+|.|..+|..++.++....+ ...++++++++.+++..+|++..+|+.+.-++...
T Consensus 170 ~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 170 SLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAG 240 (331)
T ss_dssp HHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSS
T ss_pred HHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999887721 02689999999999999999999998776666554
No 164
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.62 E-value=1.9e-14 Score=111.01 Aligned_cols=158 Identities=15% Similarity=0.013 Sum_probs=100.9
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcCc------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hcCCCHHHHHHH
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKIDE------TNTAARKRKICILKAKNKIPEAIKELTEYLK-----KFMTDQETWQEL 74 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~~~~~l 74 (201)
.+..+...|++++|+..|+++++..+ ....++..+|.++...|++++|+..+++++. .+|..+.++..+
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 267 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL 267 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence 44556677777777777777776422 2235666777777777777777777777777 556666677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCC-----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Q psy12642 75 CDLYLSEGDYAKAVFCMEELFLHHP-----HNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSC 149 (201)
Q Consensus 75 ~~~~~~~~~~~~A~~~~~~al~~~~-----~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 149 (201)
|.++...|++++|+.++++++...+ .....+..++.++...+....+.+|+..+++ ....|.....+..+|.+|
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~-~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK-KNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHH
Confidence 7777777777777777777776632 2233445556666555511116677776665 233345555666777777
Q ss_pred HHhhhhhhhhhhhHH
Q psy12642 150 HQVLTSAKCSAAKKK 164 (201)
Q Consensus 150 ~~~~~~~~a~~~~~~ 164 (201)
...|++++|....++
T Consensus 347 ~~~g~~~~A~~~~~~ 361 (378)
T 3q15_A 347 ESSCHFEQAAAFYRK 361 (378)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHH
Confidence 777777777554433
No 165
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.62 E-value=5.7e-13 Score=106.15 Aligned_cols=160 Identities=15% Similarity=0.025 Sum_probs=120.3
Q ss_pred ccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----cCCH
Q psy12642 13 FFRYEEALEHLETIIKIDETNTAARKRKICILKA----KNKIPEAIKELTEYLKKFMTDQETWQELCDLYLS----EGDY 84 (201)
Q Consensus 13 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~ 84 (201)
.+++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++.+. +++.+++.+|.+|.. .+++
T Consensus 56 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~ 131 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDK 131 (490)
T ss_dssp CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCH
Confidence 68888888888888765 567788888888888 88888888888888763 577888888888887 7888
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHH----cCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH----hhhhh
Q psy12642 85 AKAVFCMEELFLHHPHNHLLHQRYADILYT----QGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ----VLTSA 156 (201)
Q Consensus 85 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~ 156 (201)
++|+.+|+++... +++.+++.+|.++.. .+ ++++|+.+|+++++. +++.+++.++.+|.. .++.+
T Consensus 132 ~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~---d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~ 204 (490)
T 2xm6_A 132 AESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTR---DYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDA 204 (490)
T ss_dssp HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCC---CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCC---CHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHH
Confidence 8888888888754 577888888888876 55 788888888888876 467788888888887 77777
Q ss_pred hhhhhhHHHHHHHhHHHHHHHHHHHHh
Q psy12642 157 KCSAAKKKEISKQMMWVSKHLARQYEE 183 (201)
Q Consensus 157 ~a~~~~~~~~~~~~~~~~~~l~~~y~~ 183 (201)
+|....++....-...+...+...|..
T Consensus 205 ~A~~~~~~a~~~~~~~a~~~lg~~y~~ 231 (490)
T 2xm6_A 205 ISAQWYRKSATSGDELGQLHLADMYYF 231 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHc
Confidence 776655554433333444445555543
No 166
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.61 E-value=1.8e-14 Score=108.25 Aligned_cols=151 Identities=12% Similarity=0.082 Sum_probs=123.4
Q ss_pred hccCHHHHHHHHHHHHhcCc--------cc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHH
Q psy12642 12 HFFRYEEALEHLETIIKIDE--------TN---TAARKRKICILKAKNKIPEAIKELTEYLKKFMTD------QETWQEL 74 (201)
Q Consensus 12 ~~~~~~~A~~~~~~~l~~~~--------~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l 74 (201)
..|++++|.++++++.+..+ +. ...+...+.+|...|++++|+..+.+++...+.. ..++..+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l 82 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA 82 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45788888888887776432 11 1345566788999999999999999999876533 4578899
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCC--C----HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCccc------HHHH
Q psy12642 75 CDLYLSEGDYAKAVFCMEELFLHHPH--N----HLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN------IRAL 142 (201)
Q Consensus 75 ~~~~~~~~~~~~A~~~~~~al~~~~~--~----~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~ 142 (201)
|.+|..+|++++|+.+|++++.+.+. + ..++..+|.++.. | ++++|+.+|++++.+.|.. ..++
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g---~~~~A~~~~~~Al~~~~~~~~~~~~~~~~ 158 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-L---DLSKAVHLYQQAAAVFENEERLRQAAELI 158 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-T---CHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-C---CHHHHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 99999999999999999999987432 2 3578899999988 9 9999999999999988753 5788
Q ss_pred HHHHHHHHHhhhhhhhhhhhHHHH
Q psy12642 143 YGLALSCHQVLTSAKCSAAKKKEI 166 (201)
Q Consensus 143 ~~l~~~~~~~~~~~~a~~~~~~~~ 166 (201)
.+++.++..+|++++|.....+..
T Consensus 159 ~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 159 GKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999987665544
No 167
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.61 E-value=5.3e-14 Score=106.79 Aligned_cols=139 Identities=12% Similarity=0.099 Sum_probs=131.4
Q ss_pred ccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-C-CHHHHHH
Q psy12642 13 FFRYEEALEHLETIIKIDETNTAARKRKICILKAKN-KIPEAIKELTEYLKKFMTDQETWQELCDLYLSE-G-DYAKAVF 89 (201)
Q Consensus 13 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-~-~~~~A~~ 89 (201)
.+..++|+..+++++..+|.+..+|..++.++...| .+++++..+..++..+|++..+|...+.+.... + ++++++.
T Consensus 67 ~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 445578999999999999999999999999999999 599999999999999999999999999999988 8 8999999
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHH--------HHHHHHHHHHcCCcccHHHHHHHHHHHHHhhh
Q psy12642 90 CMEELFLHHPHNHLLHQRYADILYTQGGLENIE--------LAISHYLMAINLNEKNIRALYGLALSCHQVLT 154 (201)
Q Consensus 90 ~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~--------~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 154 (201)
++++++..+|.|..+|...+.+....+ .++ +++++++++++.+|.|..+|.+.+.+...++.
T Consensus 147 ~~~k~L~~dpkNy~AW~~R~wvl~~l~---~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 147 YIHGSLLPDPKNYHTWAYLHWLYSHFS---TLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp HHHHHTSSCTTCHHHHHHHHHHHHHHH---HTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhc---cccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence 999999999999999999999998888 776 99999999999999999999999999999886
No 168
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.61 E-value=8.3e-15 Score=107.97 Aligned_cols=139 Identities=12% Similarity=-0.044 Sum_probs=122.2
Q ss_pred hHHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHh
Q psy12642 3 PIVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD--QETWQELCDLYLS 80 (201)
Q Consensus 3 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~ 80 (201)
.+.|+..+...|+|++|.+.|+.++..+|.+. +.+.+|.++...+++++|+..++.+....+.. ..+++.+|.++..
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHH
Confidence 35688889999999999999999999999998 99999999999999999999999776643221 3589999999999
Q ss_pred cCCHHHHHHHHHHHhhcC--CC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHH
Q psy12642 81 EGDYAKAVFCMEELFLHH--PH-NHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLA 146 (201)
Q Consensus 81 ~~~~~~A~~~~~~al~~~--~~-~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 146 (201)
+|++++|+.+|++++.-. |. .+.+++.+|.++..+| +.++|...|++++..+|+ ..+...|.
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lG---r~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQG---NESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 999999999999998544 55 5679999999999999 999999999999999999 77766664
No 169
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.60 E-value=5.4e-13 Score=106.30 Aligned_cols=163 Identities=13% Similarity=0.084 Sum_probs=95.6
Q ss_pred ccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-----CC
Q psy12642 13 FFRYEEALEHLETIIKIDETNTAARKRKICILKA----KNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSE-----GD 83 (201)
Q Consensus 13 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-----~~ 83 (201)
.+++++|+.+|+++.+. .++.++..+|.++.. .+++++|+.+++++.+. +++.+++.+|.+|... ++
T Consensus 236 ~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~ 311 (490)
T 2xm6_A 236 TQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKN 311 (490)
T ss_dssp CCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCC
T ss_pred CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCC
Confidence 45666666666665543 334555566666665 56666666666665543 4556666666666655 66
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH----hhhhhhhh
Q psy12642 84 YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ----VLTSAKCS 159 (201)
Q Consensus 84 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~a~ 159 (201)
+++|+.+|++++.. .++.+++.+|.++...|...++++|+.+|+++++. +++.+++.++.+|.. .++.++|.
T Consensus 312 ~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 387 (490)
T 2xm6_A 312 REQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAA 387 (490)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 66666666666553 34556666666665543333566666666666665 446666666666666 56666665
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHHh
Q psy12642 160 AAKKKEISKQMMWVSKHLARQYEE 183 (201)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~~y~~ 183 (201)
...++....-...+...+...|..
T Consensus 388 ~~~~~A~~~~~~~a~~~Lg~~y~~ 411 (490)
T 2xm6_A 388 IWMRKAAEQGLSAAQVQLGEIYYY 411 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHc
Confidence 555554443344455555555554
No 170
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.60 E-value=4.5e-14 Score=107.14 Aligned_cols=147 Identities=13% Similarity=0.046 Sum_probs=134.0
Q ss_pred hhhhcc-CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Q psy12642 9 GCFHFF-RYEEALEHLETIIKIDETNTAARKRKICILKAK-N-KIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYA 85 (201)
Q Consensus 9 ~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~-~-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 85 (201)
.+...| .+++++.+++.++..+|.+..+|..++.++... + ++++++.++.+++..+|.+..+|...+.+....|.++
T Consensus 97 iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~ 176 (349)
T 3q7a_A 97 LLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLG 176 (349)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccc
Confidence 344566 599999999999999999999999999999988 7 8999999999999999999999999999998888887
Q ss_pred --------HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCC----cccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhh
Q psy12642 86 --------KAVFCMEELFLHHPHNHLLHQRYADILYTQGG----LENIELAISHYLMAINLNEKNIRALYGLALSCHQVL 153 (201)
Q Consensus 86 --------~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 153 (201)
+++.++++++..+|.|..+|..++.++...+. ...++++++++.+++..+|++..+|.++..++.+.|
T Consensus 177 ~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 177 RISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred ccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999988871 012799999999999999999999999999998887
Q ss_pred hh
Q psy12642 154 TS 155 (201)
Q Consensus 154 ~~ 155 (201)
..
T Consensus 257 ~~ 258 (349)
T 3q7a_A 257 LP 258 (349)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 171
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.58 E-value=4.7e-13 Score=102.70 Aligned_cols=158 Identities=11% Similarity=0.026 Sum_probs=130.8
Q ss_pred HHHHhhhhccCHHHHHHHHHHHHhcCcccH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH------HHHHH
Q psy12642 5 VYIIGCFHFFRYEEALEHLETIIKIDETNT-----AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ------ETWQE 73 (201)
Q Consensus 5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~ 73 (201)
+.+..+...|++++|+..+++++...|... .++..+|.++...|++++|+..+++++...|... .++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 345566789999999999999999876542 3677889999999999999999999998765432 34677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcC--------CCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc-----cHH
Q psy12642 74 LCDLYLSEGDYAKAVFCMEELFLHH--------PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK-----NIR 140 (201)
Q Consensus 74 l~~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~ 140 (201)
+|.++...|++++|+..+++++... |....++..+|.++...| ++++|..++++++...|. ...
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA---RLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 8999999999999999999999764 333557788999999999 999999999999987764 356
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhHHH
Q psy12642 141 ALYGLALSCHQVLTSAKCSAAKKKE 165 (201)
Q Consensus 141 ~~~~l~~~~~~~~~~~~a~~~~~~~ 165 (201)
++..++.++...|+.++|.....+.
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a 200 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRL 200 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7889999999999999997655433
No 172
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.58 E-value=1.2e-12 Score=97.48 Aligned_cols=166 Identities=13% Similarity=0.076 Sum_probs=128.7
Q ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC--
Q psy12642 30 DETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ------ETWQELCDLYLSEGDYAKAVFCMEELFLHHPHN-- 101 (201)
Q Consensus 30 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-- 101 (201)
+|.....+...+..+...|++++|+..+.+++...|... ..+..+|.++...|++++|+.++++++...+..
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 345556667788899999999999999999999887664 345668899999999999999999999765443
Q ss_pred ----HHHHHHHHHHHHHcCCcccHHHHHHHHHHHH---cCCccc----HHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHh
Q psy12642 102 ----HLLHQRYADILYTQGGLENIELAISHYLMAI---NLNEKN----IRALYGLALSCHQVLTSAKCSAAKKKEISKQM 170 (201)
Q Consensus 102 ----~~~~~~la~~~~~~~~~~~~~~A~~~~~~al---~~~p~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 170 (201)
..++..+|.++...| ++++|+.+|++++ +..|++ ..+++++|.+|...|++++|.....+...-..
T Consensus 151 ~~~~~~~~~~lg~~y~~~~---~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~ 227 (293)
T 2qfc_A 151 VYQNLYIENAIANIYAENG---YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 558899999999999 9999999999999 444543 26899999999999999999876655543221
Q ss_pred --------HHHHHHHHHHHHhhhcchHH-HHHHHhhc
Q psy12642 171 --------MWVSKHLARQYEEQQGNTET-LTELMSAL 198 (201)
Q Consensus 171 --------~~~~~~l~~~y~~~~~~~~~-~~~~~~~~ 198 (201)
..+...+...|..+...+++ ...+.+++
T Consensus 228 ~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 228 RINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 23444567777777777666 33344444
No 173
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.57 E-value=2.9e-14 Score=95.95 Aligned_cols=123 Identities=12% Similarity=0.031 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC------H
Q psy12642 35 AARKRKICILKAKNKIPEAIKELTEYLKKFMTD------QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHN------H 102 (201)
Q Consensus 35 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------~ 102 (201)
.++..+|.++...|++++|+..+++++...+.. ..++..+|.++...|++++|+.++++++...+.. .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 344444444444444444444444444433211 1234444444444444444444444444432211 2
Q ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCc------ccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642 103 LLHQRYADILYTQGGLENIELAISHYLMAINLNE------KNIRALYGLALSCHQVLTSAKCSA 160 (201)
Q Consensus 103 ~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~~~~~~a~~ 160 (201)
.++..+|.++...| ++++|+.++++++...+ ....++..++.++...|++++|..
T Consensus 90 ~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 150 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQ---DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 150 (164)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHH
Confidence 23444444444444 44444444444443321 112344444444444444444433
No 174
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.57 E-value=1.1e-13 Score=101.98 Aligned_cols=153 Identities=10% Similarity=-0.060 Sum_probs=121.7
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHH---------------------------------------------
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRK--------------------------------------------- 40 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~--------------------------------------------- 40 (201)
.++++ ..+++.+|.+.|.+++..+|..+.+|..+
T Consensus 13 ~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y 91 (282)
T 4f3v_A 13 SAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLY 91 (282)
T ss_dssp HHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTT
T ss_pred HHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcc
Confidence 44555 57999999999999999999999988866
Q ss_pred -----------------HHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC--
Q psy12642 41 -----------------ICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHN-- 101 (201)
Q Consensus 41 -----------------a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-- 101 (201)
+.++...|++++|.+.|..++...|++. +.+.+|.+++..++|++|+..|++++...+..
T Consensus 92 ~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~ 170 (282)
T 4f3v_A 92 GDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLA 170 (282)
T ss_dssp CCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHH
T ss_pred cccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccH
Confidence 2456667888888888888887788777 88888888888888888888888776643221
Q ss_pred HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCC--cc-cHHHHHHHHHHHHHhhhhhhhhhhhH
Q psy12642 102 HLLHQRYADILYTQGGLENIELAISHYLMAINLN--EK-NIRALYGLALSCHQVLTSAKCSAAKK 163 (201)
Q Consensus 102 ~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 163 (201)
..+++.+|.++...| ++++|+.+|++++... |. .+.+++.++.|+.++|+.++|.....
T Consensus 171 ~~a~~~LG~al~~LG---~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~ 232 (282)
T 4f3v_A 171 GAAGVAHGVAAANLA---LFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLE 232 (282)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 347888899988899 8999999999888554 54 66788889999999998888855443
No 175
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.57 E-value=1.7e-13 Score=108.41 Aligned_cols=170 Identities=12% Similarity=0.077 Sum_probs=115.1
Q ss_pred HHHhhhhcc---CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhcCCCHHHHHHHHHH-
Q psy12642 6 YIIGCFHFF---RYEEALEHLETIIKIDETNTAARKRKICILKAK----NKIPEAIKELTEYLKKFMTDQETWQELCDL- 77 (201)
Q Consensus 6 ~~~~~~~~~---~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~- 77 (201)
++..+...| ++++|+.+|+++.+.+|.....++.+|.+|... +++++|+.+|+++. |+++.+++.+|.+
T Consensus 182 Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~ 258 (452)
T 3e4b_A 182 LATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLL 258 (452)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHH
T ss_pred HHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 344455566 788888888888888877777777778777654 67788888888776 7777888888877
Q ss_pred H--HhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcC-CcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH---
Q psy12642 78 Y--LSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQG-GLENIELAISHYLMAINLNEKNIRALYGLALSCHQ--- 151 (201)
Q Consensus 78 ~--~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--- 151 (201)
+ ...+++++|+.+|+++... +++.+++.+|.++.... ...++++|+.+|+++. |+++.++++|+.+|..
T Consensus 259 ~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g 333 (452)
T 3e4b_A 259 YDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYL 333 (452)
T ss_dssp HHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTT
T ss_pred HhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCC
Confidence 3 4677888888888887743 47777888887776431 1236788888888877 7777788888877776
Q ss_pred -hhhhhhhhhhhHHHHHHHhHHHHHHHHHHHHh
Q psy12642 152 -VLTSAKCSAAKKKEISKQMMWVSKHLARQYEE 183 (201)
Q Consensus 152 -~~~~~~a~~~~~~~~~~~~~~~~~~l~~~y~~ 183 (201)
..+..+|..-..+....-...+...|...|..
T Consensus 334 ~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~ 366 (452)
T 3e4b_A 334 GKVYPQKALDHLLTAARNGQNSADFAIAQLFSQ 366 (452)
T ss_dssp SSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHS
T ss_pred CCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHh
Confidence 22556665544444433333344445555543
No 176
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.57 E-value=9.2e-14 Score=89.21 Aligned_cols=100 Identities=11% Similarity=0.093 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Q psy12642 52 EAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMA 131 (201)
Q Consensus 52 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~a 131 (201)
.|+..++++++.+|+++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...| ++++|+..|+++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQG---DRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHH
Confidence 46677777777777777777777777777777777777777777777777777777777777777 777777777777
Q ss_pred HcCCcc--cHHHHHHHHHHHHHhhh
Q psy12642 132 INLNEK--NIRALYGLALSCHQVLT 154 (201)
Q Consensus 132 l~~~p~--~~~~~~~l~~~~~~~~~ 154 (201)
+++.|. +......+......+++
T Consensus 80 l~~~~~~~~~~~~~~l~~~l~~l~~ 104 (115)
T 2kat_A 80 LAAAQSRGDQQVVKELQVFLRRLAR 104 (115)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHhccccccHHHHHHHHHHHHHhcc
Confidence 777764 33444445544444443
No 177
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.55 E-value=8.9e-14 Score=88.25 Aligned_cols=91 Identities=21% Similarity=0.226 Sum_probs=77.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCccc------HH
Q psy12642 67 DQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN------IR 140 (201)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~ 140 (201)
++..+..+|.++...|++++|+..|++++..+|+++.++..+|.++...| ++++|+..|+++++++|++ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLG---EYTQAIQMCQQGLRYTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTSCSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence 35678888888888888888888888888888888888888888888888 8888888888888888887 78
Q ss_pred HHHHHHHHHHHhhhhhhhhh
Q psy12642 141 ALYGLALSCHQVLTSAKCSA 160 (201)
Q Consensus 141 ~~~~l~~~~~~~~~~~~a~~ 160 (201)
+++.++.++..+|+...+..
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHHHhHhhhHh
Confidence 88888888888887777754
No 178
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.55 E-value=8e-14 Score=89.51 Aligned_cols=98 Identities=17% Similarity=0.101 Sum_probs=87.0
Q ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q psy12642 18 EALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLH 97 (201)
Q Consensus 18 ~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 97 (201)
+|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|+++.+|..+|.++...|++++|+..|++++..
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC--CHHHHHHHHHHHHHc
Q psy12642 98 HPH--NHLLHQRYADILYTQ 115 (201)
Q Consensus 98 ~~~--~~~~~~~la~~~~~~ 115 (201)
.|. +......+...+...
T Consensus 83 ~~~~~~~~~~~~l~~~l~~l 102 (115)
T 2kat_A 83 AQSRGDQQVVKELQVFLRRL 102 (115)
T ss_dssp HHHHTCHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHh
Confidence 874 444444444444433
No 179
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.53 E-value=6.7e-14 Score=98.19 Aligned_cols=145 Identities=14% Similarity=0.071 Sum_probs=116.9
Q ss_pred HHHHhhhhccCHHHHHHHHHHHHh------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---cCCC----HHHH
Q psy12642 5 VYIIGCFHFFRYEEALEHLETIIK------IDETNTAARKRKICILKAKNKIPEAIKELTEYLKK---FMTD----QETW 71 (201)
Q Consensus 5 ~~~~~~~~~~~~~~A~~~~~~~l~------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~----~~~~ 71 (201)
..+..+...|++++|+..+++++. ..|....++..+|.++...|++++|+..+++++.. .+++ ..++
T Consensus 31 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 110 (203)
T 3gw4_A 31 MLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANA 110 (203)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHH
Confidence 455667889999999999999999 55677789999999999999999999999999987 4533 4568
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCC--CCH----HHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHH
Q psy12642 72 QELCDLYLSEGDYAKAVFCMEELFLHHP--HNH----LLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGL 145 (201)
Q Consensus 72 ~~l~~~~~~~~~~~~A~~~~~~al~~~~--~~~----~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 145 (201)
..+|.++...|++++|+.++++++...+ .++ .++..+|.++...| ++++|+.++++++++....... ...
T Consensus 111 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~-~~~ 186 (203)
T 3gw4_A 111 YEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK---NLLEAQQHWLRARDIFAELEDS-EAV 186 (203)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCH-HHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc---CHHHHHHHHHHHHHHHHHcCCH-HHH
Confidence 8899999999999999999999997532 222 34689999999999 9999999999999876542221 334
Q ss_pred HHHHHHhh
Q psy12642 146 ALSCHQVL 153 (201)
Q Consensus 146 ~~~~~~~~ 153 (201)
+.+...++
T Consensus 187 ~~~~~~~~ 194 (203)
T 3gw4_A 187 NELMTRLN 194 (203)
T ss_dssp HHHHHHHH
T ss_pred HHHHhccc
Confidence 44444443
No 180
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.53 E-value=1.3e-13 Score=84.39 Aligned_cols=81 Identities=20% Similarity=0.232 Sum_probs=41.6
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q psy12642 33 NTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADIL 112 (201)
Q Consensus 33 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 112 (201)
++.++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+.++++++..+|+++.++..+|.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34444455555555555555555555555555555555555555555555555555555555555555555555555444
Q ss_pred H
Q psy12642 113 Y 113 (201)
Q Consensus 113 ~ 113 (201)
.
T Consensus 88 ~ 88 (91)
T 1na3_A 88 Q 88 (91)
T ss_dssp H
T ss_pred H
Confidence 3
No 181
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.53 E-value=3.7e-13 Score=82.31 Aligned_cols=85 Identities=25% Similarity=0.386 Sum_probs=80.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHH
Q psy12642 66 TDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGL 145 (201)
Q Consensus 66 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 145 (201)
.++.+++.+|.++...|++++|+.+|++++..+|+++.++..+|.++...+ ++++|+.+|+++++.+|+++.++..+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~p~~~~~~~~l 83 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG---DYDEAIEYYQKALELDPNNAEAKQNL 83 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh---hHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 457789999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHhh
Q psy12642 146 ALSCHQVL 153 (201)
Q Consensus 146 ~~~~~~~~ 153 (201)
+.++...|
T Consensus 84 ~~~~~~~g 91 (91)
T 1na3_A 84 GNAKQKQG 91 (91)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcC
Confidence 99998765
No 182
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.52 E-value=1.5e-14 Score=91.95 Aligned_cols=94 Identities=11% Similarity=0.085 Sum_probs=84.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC------HHHHH
Q psy12642 33 NTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHN------HLLHQ 106 (201)
Q Consensus 33 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~ 106 (201)
++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++..+|++ ..+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 457788999999999999999999999999999999999999999999999999999999999999998 88899
Q ss_pred HHHHHHHHcCCcccHHHHHHHHH
Q psy12642 107 RYADILYTQGGLENIELAISHYL 129 (201)
Q Consensus 107 ~la~~~~~~~~~~~~~~A~~~~~ 129 (201)
.+|.++...| +++.|+..++
T Consensus 83 ~~~~~~~~~~---~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVG---SVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHH---CCCCCSSSSS
T ss_pred HHHHHHHHHH---hHhhhHhHHH
Confidence 9999998888 7766665544
No 183
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.52 E-value=2.7e-13 Score=91.15 Aligned_cols=131 Identities=11% Similarity=-0.019 Sum_probs=111.8
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHH
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNT------AARKRKICILKAKNKIPEAIKELTEYLKKFMTD------QETW 71 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~ 71 (201)
...+..+...|++++|+..++++++..+... .++..+|.++...|++++|+..+++++...+.. ..++
T Consensus 13 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 92 (164)
T 3ro3_A 13 GNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSC 92 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 3456668889999999999999998765432 588899999999999999999999999876543 5678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCC--C----HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc
Q psy12642 72 QELCDLYLSEGDYAKAVFCMEELFLHHPH--N----HLLHQRYADILYTQGGLENIELAISHYLMAINLNEK 137 (201)
Q Consensus 72 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~----~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 137 (201)
..+|.++...|++++|+.++++++...+. + ...+..+|.++...| ++++|+.++++++++.+.
T Consensus 93 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 93 YSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG---NHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999987542 2 357889999999999 999999999999987554
No 184
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.51 E-value=6.5e-12 Score=96.33 Aligned_cols=157 Identities=12% Similarity=-0.061 Sum_probs=125.8
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-----HHHHH
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKID--------ETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD-----QETWQ 72 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~ 72 (201)
.+..+...|++++|+..+++++... |....++..+|.++...|++++|...+++++...|.. ..++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 4556788999999999999999865 3455677889999999999999999999999987653 45788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCC--CCHHHHH-----HHHHHHHHcCCcccHHHHHHHHHHHHcCCccc----HHH
Q psy12642 73 ELCDLYLSEGDYAKAVFCMEELFLHHP--HNHLLHQ-----RYADILYTQGGLENIELAISHYLMAINLNEKN----IRA 141 (201)
Q Consensus 73 ~l~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~-----~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~ 141 (201)
.+|.++...|++++|...+++++...+ ..+..+. ..+.++...| ++++|..++.+++...|.. ...
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG---DKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCC---CHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 899999999999999999999987632 2221121 3445577899 9999999999999877643 346
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHH
Q psy12642 142 LYGLALSCHQVLTSAKCSAAKKKE 165 (201)
Q Consensus 142 ~~~l~~~~~~~~~~~~a~~~~~~~ 165 (201)
+..++.++...|+.++|.......
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 788999999999999997655443
No 185
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.51 E-value=2.3e-12 Score=96.02 Aligned_cols=161 Identities=14% Similarity=0.088 Sum_probs=124.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC------HHH
Q psy12642 37 RKRKICILKAKNKIPEAIKELTEYLKKFMTDQE------TWQELCDLYLSEGDYAKAVFCMEELFLHHPHN------HLL 104 (201)
Q Consensus 37 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~ 104 (201)
+...+..+...|++++|+..+++++...+.++. .+..+|.++...|++++|+.+|++++...+.. ..+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 334577888999999999999999998877755 23358889999999999999999999864432 336
Q ss_pred HHHHHHHHHHcCCcccHHHHHHHHHHHHc-------CCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH--------
Q psy12642 105 HQRYADILYTQGGLENIELAISHYLMAIN-------LNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQ-------- 169 (201)
Q Consensus 105 ~~~la~~~~~~~~~~~~~~A~~~~~~al~-------~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------- 169 (201)
+..+|.++...| ++++|+.+|+++++ ..|....+++++|.+|..+|++++|.....+...-.
T Consensus 158 ~~~lg~~y~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~ 234 (293)
T 3u3w_A 158 ENAIANIYAENG---YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTT
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 899999999999 99999999999994 334456689999999999999999977555443211
Q ss_pred hHHHHHHHHHHHHhhhcc-hHHHHHHHhhccC
Q psy12642 170 MMWVSKHLARQYEEQQGN-TETLTELMSALQV 200 (201)
Q Consensus 170 ~~~~~~~l~~~y~~~~~~-~~~~~~~~~~~~~ 200 (201)
...+...+...|..+... ++++..+.+++.|
T Consensus 235 ~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 133455677778777754 6677777666543
No 186
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.50 E-value=1.9e-12 Score=96.62 Aligned_cols=145 Identities=16% Similarity=0.057 Sum_probs=114.1
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC----CHHHHHHHHH-
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDE--TNTAARKRKICILKAKNKIPEAIKELTEYLKKFMT----DQETWQELCD- 76 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~- 76 (201)
++.+..+...|++++|++.+.+.+..+| .+..++...+.++..+|+.+.|.+.+++..+.+|+ +..+...++.
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea 183 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAES 183 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHH
Confidence 3455667778999999999999988886 78899999999999999999999999998888883 2233344443
Q ss_pred -HHHhcC--CHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcC----------CcccHHH
Q psy12642 77 -LYLSEG--DYAKAVFCMEELFLHHPH--NHLLHQRYADILYTQGGLENIELAISHYLMAINL----------NEKNIRA 141 (201)
Q Consensus 77 -~~~~~~--~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~----------~p~~~~~ 141 (201)
+.+..| ++.+|...|+++....|+ ++..++. ++..+| ++++|...++..++. +|+++.+
T Consensus 184 ~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g---~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~ 257 (310)
T 3mv2_B 184 YIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQR---NIAEAQGIVELLLSDYYSVEQKENAVLYKPTF 257 (310)
T ss_dssp HHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHT---CHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHH
T ss_pred HHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcC---CHHHHHHHHHHHHHhcccccccccCCCCCHHH
Confidence 355555 899999999998888776 2333333 788889 999999999977776 4778999
Q ss_pred HHHHHHHHHHhhh
Q psy12642 142 LYGLALSCHQVLT 154 (201)
Q Consensus 142 ~~~l~~~~~~~~~ 154 (201)
+.+++.+...+|+
T Consensus 258 LaN~i~l~~~lgk 270 (310)
T 3mv2_B 258 LANQITLALMQGL 270 (310)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCh
Confidence 9899999988886
No 187
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.49 E-value=4.8e-12 Score=100.04 Aligned_cols=165 Identities=12% Similarity=0.062 Sum_probs=133.2
Q ss_pred HHhhhhcc----CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q psy12642 7 IIGCFHFF----RYEEALEHLETIIKIDETNTAARKRKICILKAKN---KIPEAIKELTEYLKKFMTDQETWQELCDLYL 79 (201)
Q Consensus 7 ~~~~~~~~----~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 79 (201)
+..+...+ +.+++..+++.+...+|. +++.+|.++...| ++++|+..|+++....|.+...++.+|.+|.
T Consensus 148 g~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~ 224 (452)
T 3e4b_A 148 VLLYRTQGTYDQHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLG 224 (452)
T ss_dssp HHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHT
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34444444 455566666666655554 8899999999999 9999999999999999999999899999997
Q ss_pred hc----CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH---HcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHh
Q psy12642 80 SE----GDYAKAVFCMEELFLHHPHNHLLHQRYADILY---TQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQV 152 (201)
Q Consensus 80 ~~----~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~---~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 152 (201)
.. +++++|+.+|+++. |+++.+++.+|.+++ ..+ ++++|+.+|+++.+. +++.++++++.+|. .
T Consensus 225 ~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~---d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~ 295 (452)
T 3e4b_A 225 DATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELG---DVEQMMKYLDNGRAA--DQPRAELLLGKLYY-E 295 (452)
T ss_dssp CGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGC---CHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-H
T ss_pred CCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-c
Confidence 65 79999999999998 899999999999943 556 999999999999965 47899999999998 6
Q ss_pred h-----hhhhhhhhhHHHHHHHhHHHHHHHHHHHHhh
Q psy12642 153 L-----TSAKCSAAKKKEISKQMMWVSKHLARQYEEQ 184 (201)
Q Consensus 153 ~-----~~~~a~~~~~~~~~~~~~~~~~~l~~~y~~~ 184 (201)
| +..+|.....+.. .-...+...|...|...
T Consensus 296 G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G 331 (452)
T 3e4b_A 296 GKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRG 331 (452)
T ss_dssp CSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCC
Confidence 6 7888877666666 44555666677777664
No 188
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.46 E-value=8.2e-13 Score=82.80 Aligned_cols=88 Identities=17% Similarity=0.087 Sum_probs=60.3
Q ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc--cHHH
Q psy12642 64 FMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK--NIRA 141 (201)
Q Consensus 64 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~ 141 (201)
+|+++.+++.+|.++...|++++|+..|++++..+|+++.+++.+|.++...| ++++|+..|++++++.|. +...
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~l~~~~~~~~~ 79 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLD---RTDDAIDTYAQGIEVAREEGTQKD 79 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhhhcCCchhH
Confidence 57777777777777777777777777777777777777777777777777777 777777777777776653 3444
Q ss_pred HHHHHHHHHHhhh
Q psy12642 142 LYGLALSCHQVLT 154 (201)
Q Consensus 142 ~~~l~~~~~~~~~ 154 (201)
...+...+...+.
T Consensus 80 ~~~l~~~l~~~~~ 92 (100)
T 3ma5_A 80 LSELQDAKLKAEG 92 (100)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccc
Confidence 4455555554443
No 189
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.44 E-value=6.8e-12 Score=83.33 Aligned_cols=121 Identities=13% Similarity=0.021 Sum_probs=104.8
Q ss_pred ccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----cCCHHHHH
Q psy12642 13 FFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLS----EGDYAKAV 88 (201)
Q Consensus 13 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~~A~ 88 (201)
.+++++|+.+|+++.+..+.... +|.+|...+..++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 46899999999999988754443 899999989999999999999986 789999999999998 89999999
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHH----cCCcccHHHHHHHHHHHHcCCcccHHHHHHHH
Q psy12642 89 FCMEELFLHHPHNHLLHQRYADILYT----QGGLENIELAISHYLMAINLNEKNIRALYGLA 146 (201)
Q Consensus 89 ~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 146 (201)
.+|+++... .++.+.+.+|.++.. .+ ++++|+.+|+++.+.. ++.+...|+
T Consensus 82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~---d~~~A~~~~~~Aa~~g--~~~A~~~l~ 136 (138)
T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVK---NEKQAVKTFEKACRLG--SEDACGILN 136 (138)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCC---CHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCc---CHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence 999999876 789999999999998 67 9999999999999984 445555544
No 190
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.43 E-value=3.2e-13 Score=84.16 Aligned_cols=90 Identities=18% Similarity=0.244 Sum_probs=62.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcC
Q psy12642 38 KRKICILKAKNKIPEAIKELTEYLKKFMTDQE-TWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQG 116 (201)
Q Consensus 38 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 116 (201)
+..|.++...|++++|+..++++++.+|+++. +++.+|.++...|++++|+.+|++++..+|+++.++.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 34566677777777777777777777777777 77777777777777777777777777777777665533 3
Q ss_pred CcccHHHHHHHHHHHHcCCccc
Q psy12642 117 GLENIELAISHYLMAINLNEKN 138 (201)
Q Consensus 117 ~~~~~~~A~~~~~~al~~~p~~ 138 (201)
.+.+++..|++++..+|++
T Consensus 76 ---~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 76 ---MVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp ---HHHHHHHHHCCTTHHHHCC
T ss_pred ---HHHHHHHHHHHHhccCccc
Confidence 5666666666666665553
No 191
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.42 E-value=2.2e-12 Score=80.85 Aligned_cols=86 Identities=12% Similarity=-0.020 Sum_probs=73.2
Q ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--CHHHHH
Q psy12642 29 IDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPH--NHLLHQ 106 (201)
Q Consensus 29 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~ 106 (201)
.+|+++.+++.+|.++...|++++|+..++++++.+|+++.+|+.+|.+|...|++++|+..|++++.+.|. +.....
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~ 81 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS 81 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence 479999999999999999999999999999999999999999999999999999999999999999988653 444444
Q ss_pred HHHHHHHH
Q psy12642 107 RYADILYT 114 (201)
Q Consensus 107 ~la~~~~~ 114 (201)
.+..++..
T Consensus 82 ~l~~~l~~ 89 (100)
T 3ma5_A 82 ELQDAKLK 89 (100)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544443
No 192
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.39 E-value=1.2e-12 Score=81.57 Aligned_cols=94 Identities=11% Similarity=0.028 Sum_probs=83.5
Q ss_pred CchHHHHHhhhhccCHHHHHHHHHHHHhcCcccHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q psy12642 1 MAPIVYIIGCFHFFRYEEALEHLETIIKIDETNTA-ARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYL 79 (201)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~-~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 79 (201)
|..+-.+..++..|++++|+..|+++++.+|+++. ++..+|.++...|++++|+..++++++.+|+++.++..
T Consensus 1 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~------ 74 (99)
T 2kc7_A 1 MDQLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR------ 74 (99)
T ss_dssp CCTHHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH------
T ss_pred CcHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH------
Confidence 34566778889999999999999999999999999 99999999999999999999999999999999888744
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCH
Q psy12642 80 SEGDYAKAVFCMEELFLHHPHNH 102 (201)
Q Consensus 80 ~~~~~~~A~~~~~~al~~~~~~~ 102 (201)
+.+.+++..|++++..+|+++
T Consensus 75 --~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 --KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp --HHHHHHHHHHCCTTHHHHCCS
T ss_pred --HHHHHHHHHHHHHhccCcccc
Confidence 567888889988888877653
No 193
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.35 E-value=2.5e-10 Score=99.05 Aligned_cols=130 Identities=16% Similarity=0.111 Sum_probs=81.9
Q ss_pred hccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12642 12 HFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCM 91 (201)
Q Consensus 12 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 91 (201)
..+++++|.++++++ +.+.+|..+|.++...|++++|+..|.++ +++..|..+|.++.+.|+|++|+++|
T Consensus 1088 ~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL 1157 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYL 1157 (1630)
T ss_pred HHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 456666666666543 44666666666666666666666666553 55666666666666666666666666
Q ss_pred HHHhhcCCC---------------------------CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHH
Q psy12642 92 EELFLHHPH---------------------------NHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYG 144 (201)
Q Consensus 92 ~~al~~~~~---------------------------~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 144 (201)
..+++..++ +...+..+|..+...| ++++|+.+|.++ ..|..
T Consensus 1158 ~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg---~YeeA~~~Y~kA--------~ny~r 1226 (1630)
T 1xi4_A 1158 QMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEK---MYDAAKLLYNNV--------SNFGR 1226 (1630)
T ss_pred HHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcC---CHHHHHHHHHhh--------hHHHH
Confidence 555543322 2234556777777777 777777777775 25667
Q ss_pred HHHHHHHhhhhhhhhhhh
Q psy12642 145 LALSCHQVLTSAKCSAAK 162 (201)
Q Consensus 145 l~~~~~~~~~~~~a~~~~ 162 (201)
++.++.++|++++|....
T Consensus 1227 LA~tLvkLge~q~AIEaa 1244 (1630)
T 1xi4_A 1227 LASTLVHLGEYQAAVDGA 1244 (1630)
T ss_pred HHHHHHHhCCHHHHHHHH
Confidence 777777777777775544
No 194
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.34 E-value=6.4e-11 Score=92.38 Aligned_cols=155 Identities=10% Similarity=0.004 Sum_probs=128.2
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcCcccH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKIDETNT-----------------AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ 68 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~-----------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~ 68 (201)
-+..+...|+|++|++.|.++++..|... .++..+|.+|...|++++|++.+.+++...+...
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 45667889999999999999999877543 4578899999999999999999999988765542
Q ss_pred ------HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC------CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcC--
Q psy12642 69 ------ETWQELCDLYLSEGDYAKAVFCMEELFLHHP------HNHLLHQRYADILYTQGGLENIELAISHYLMAINL-- 134 (201)
Q Consensus 69 ------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~-- 134 (201)
.+...+|.++...|++++|+.++++++...+ .-..++..+|.++...| ++++|+..+++++..
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~l~~~~~~~~ 166 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKK---QYKDSLALINDLLREFK 166 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHcc---ChHHHHHHHHHHHHHHH
Confidence 2455678888889999999999999986532 23568889999999999 999999999998764
Q ss_pred ----CcccHHHHHHHHHHHHHhhhhhhhhhhhH
Q psy12642 135 ----NEKNIRALYGLALSCHQVLTSAKCSAAKK 163 (201)
Q Consensus 135 ----~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 163 (201)
.|....++..++.+|...|++.+|.....
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 199 (434)
T 4b4t_Q 167 KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLT 199 (434)
T ss_dssp TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 34456789999999999999999976544
No 195
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.33 E-value=2.6e-12 Score=99.95 Aligned_cols=165 Identities=18% Similarity=0.121 Sum_probs=82.5
Q ss_pred hhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12642 11 FHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFC 90 (201)
Q Consensus 11 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 90 (201)
...|++++|+.+++.+.+..++ +.+...++.+|.+.|++.++..+++ .| +...|..+|..+...|.|++|..+
T Consensus 72 e~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~-----~p-n~~a~~~IGd~~~~~g~yeeA~~~ 144 (449)
T 1b89_A 72 NTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFIN-----GP-NNAHIQQVGDRCYDEKMYDAAKLL 144 (449)
T ss_dssp --------------------------------------CHHHHTTTTT-----CC-----------------CTTTHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHc-----CC-cHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3345555555555554443222 3444445555555555555444442 13 335788889999999999999999
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHh
Q psy12642 91 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQM 170 (201)
Q Consensus 91 ~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 170 (201)
|.++ ..+..+|.++...| ++++|++.++++ +++.+|..+..++...|+++.|...... .. ..
T Consensus 145 Y~~a--------~n~~~LA~~L~~Lg---~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~-~~ 206 (449)
T 1b89_A 145 YNNV--------SNFGRLASTLVHLG---EYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IV-VH 206 (449)
T ss_dssp HHHT--------TCHHHHHHHHHTTT---CHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TT-TC
T ss_pred HHHh--------hhHHHHHHHHHHhc---cHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HH-hC
Confidence 9876 35889999999999 999999999998 4688999999999999999999553322 11 11
Q ss_pred HHHHHHHHHHHHhhhcchHHHHHHHhhccC
Q psy12642 171 MWVSKHLARQYEEQQGNTETLTELMSALQV 200 (201)
Q Consensus 171 ~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~ 200 (201)
+.....+...|+.....++++.-+-++|++
T Consensus 207 ad~l~~lv~~Yek~G~~eEai~lLe~aL~l 236 (449)
T 1b89_A 207 ADELEELINYYQDRGYFEELITMLEAALGL 236 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HhhHHHHHHHHHHCCCHHHHHHHHHHHhCC
Confidence 122234667788888888887777777765
No 196
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.28 E-value=1.4e-10 Score=86.62 Aligned_cols=141 Identities=10% Similarity=0.012 Sum_probs=115.2
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q psy12642 19 ALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFM--TDQETWQELCDLYLSEGDYAKAVFCMEELFL 96 (201)
Q Consensus 19 A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 96 (201)
|+..+++.+...+.+..++..+|.++...|++++|++++.+.+..+| ++.+++...+.++..+|+.+.|.+.++++..
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 78888888877666677778999999999999999999999999887 7899999999999999999999999999999
Q ss_pred cCCC----CHHHHHHHHHH--HHHcCCcccHHHHHHHHHHHHcCCcc--cHHHHHHHHHHHHHhhhhhhhhhhhH
Q psy12642 97 HHPH----NHLLHQRYADI--LYTQGGLENIELAISHYLMAINLNEK--NIRALYGLALSCHQVLTSAKCSAAKK 163 (201)
Q Consensus 97 ~~~~----~~~~~~~la~~--~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~a~~~~~ 163 (201)
.+|+ +......++.. ....|+ .++.+|...|++..+..|+ .+..+++ ++.++|++++|.....
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l~~g~-~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKFATNK-ETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVE 235 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHTC-STTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHH
T ss_pred cCccccccchHHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHH
Confidence 9983 23344555444 443332 2799999999999999887 3445555 8999999999977554
No 197
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=99.27 E-value=1.8e-10 Score=87.59 Aligned_cols=123 Identities=17% Similarity=0.068 Sum_probs=100.3
Q ss_pred ccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC----HHHHHH----HHHH--HHHhcCCCHHHHHHHHHHHHhcC
Q psy12642 13 FFRYEEALEHLETIIKIDETNTAARKRKICILKAKNK----IPEAIK----ELTE--YLKKFMTDQETWQELCDLYLSEG 82 (201)
Q Consensus 13 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~----~~~A~~----~~~~--~~~~~p~~~~~~~~l~~~~~~~~ 82 (201)
..++.+|+.+|+++++.+|+++.++..++.++..... ...... .+.. .+...|.++.++..++..+...|
T Consensus 212 ~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~g 291 (372)
T 3ly7_A 212 DKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKG 291 (372)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCC
Confidence 4556899999999999999999999988887763211 111111 1221 22467999999999999999899
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccH
Q psy12642 83 DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNI 139 (201)
Q Consensus 83 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 139 (201)
++++|+..+++++.++|+ +..+..+|.++...| ++++|++.|.+|+.++|..+
T Consensus 292 d~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G---~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 292 KTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKG---MNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp CHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHSCSHH
T ss_pred CHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCC---CHHHHHHHHHHHHhcCCCcC
Confidence 999999999999999975 788899999999999 99999999999999999865
No 198
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.26 E-value=5.1e-11 Score=92.79 Aligned_cols=173 Identities=14% Similarity=0.170 Sum_probs=116.1
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYA 85 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 85 (201)
.+..|+..|+|++|..+|.++ ..+..+|.++..+|++++|++.+.++ +++.+|...+.++...|+++
T Consensus 128 IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~ 194 (449)
T 1b89_A 128 VGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFR 194 (449)
T ss_dssp ---------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHH
Confidence 455677777777777777765 35567788888888888888888777 46777888778888888888
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH--hhhhhhhhhhhH
Q psy12642 86 KAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ--VLTSAKCSAAKK 163 (201)
Q Consensus 86 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--~~~~~~a~~~~~ 163 (201)
.|..+... +..+|+ -...+...|...| .+++|+.++++++.+++.+...+..++.+|.+ .++..++.....
T Consensus 195 lA~~~~l~-L~~~ad---~l~~lv~~Yek~G---~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~ 267 (449)
T 1b89_A 195 LAQMCGLH-IVVHAD---ELEELINYYQDRG---YFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 267 (449)
T ss_dssp HHHHTTTT-TTTCHH---HHHHHHHHHHHTT---CHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred HHHHHHHH-HHhCHh---hHHHHHHHHHHCC---CHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 88766664 224443 3445778889999 99999999999999999999999999999886 344444433222
Q ss_pred HH--HHHHhHHH-----HHHHHHHHHhhhcchHHHHHHHhhc
Q psy12642 164 KE--ISKQMMWV-----SKHLARQYEEQQGNTETLTELMSAL 198 (201)
Q Consensus 164 ~~--~~~~~~~~-----~~~l~~~y~~~~~~~~~~~~~~~~~ 198 (201)
.. +..+.+.+ ...+.-.|-+.+..++++.++++.+
T Consensus 268 ~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~ 309 (449)
T 1b89_A 268 SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP 309 (449)
T ss_dssp TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCC
Confidence 11 12222222 2345666777777888888888764
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.19 E-value=2e-10 Score=91.44 Aligned_cols=120 Identities=8% Similarity=-0.096 Sum_probs=66.3
Q ss_pred hhhccCHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----cCCCH---HHHHH
Q psy12642 10 CFHFFRYEEALEHLETIIKI--------DETNTAARKRKICILKAKNKIPEAIKELTEYLKK-----FMTDQ---ETWQE 73 (201)
Q Consensus 10 ~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~---~~~~~ 73 (201)
+..+|+|++|+..++++++. +|.-..++..+|.+|..+|++++|+.++++++.. .|+++ ..+..
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44566666666666666653 1223345555666666666666666666666542 23332 34555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhc-----CCCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHH
Q psy12642 74 LCDLYLSEGDYAKAVFCMEELFLH-----HPHNHL---LHQRYADILYTQGGLENIELAISHYLMAI 132 (201)
Q Consensus 74 l~~~~~~~~~~~~A~~~~~~al~~-----~~~~~~---~~~~la~~~~~~~~~~~~~~A~~~~~~al 132 (201)
+|.+|..+|++++|+..+++++.+ .|+++. ....++.++..++ .+++|...|.++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~---~~~~ae~~~~~~~ 462 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELR---MFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 666666666666666666666542 344433 3345555555555 5666666555553
No 200
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.19 E-value=1.4e-09 Score=94.42 Aligned_cols=175 Identities=15% Similarity=0.068 Sum_probs=120.0
Q ss_pred hHHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---------------
Q psy12642 3 PIVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD--------------- 67 (201)
Q Consensus 3 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~--------------- 67 (201)
+.-++..+...|++++|+..|.++ +++..+..++.++...|++++|++++..+++..++.
T Consensus 1108 WsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~r 1182 (1630)
T 1xi4_A 1108 WSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNR 1182 (1630)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcC
Confidence 344667778888888888888664 667777788888888888888888888877655331
Q ss_pred ------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCC
Q psy12642 68 ------------QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLN 135 (201)
Q Consensus 68 ------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~ 135 (201)
...+..+|..+...|+|++|..+|.++ ..|..+|.++...| ++++|++.++++
T Consensus 1183 leele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLg---e~q~AIEaarKA---- 1247 (1630)
T 1xi4_A 1183 LAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLG---EYQAAVDGARKA---- 1247 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhC---CHHHHHHHHHHh----
Confidence 223556777788888888888888774 57788888888888 888888888877
Q ss_pred cccHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHhHHHHHHHHHHHHhhhcchHHHHHHHhhccC
Q psy12642 136 EKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYEEQQGNTETLTELMSALQV 200 (201)
Q Consensus 136 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~ 200 (201)
.++.+|..++.++...|++..|...-.. ..........+...|......++++.-.-++|++
T Consensus 1248 -~n~~aWkev~~acve~~Ef~LA~~cgl~--Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L 1309 (1630)
T 1xi4_A 1248 -NSTRTWKEVCFACVDGKEFRLAQMCGLH--IVVHADELEELINYYQDRGYFEELITMLEAALGL 1309 (1630)
T ss_pred -CCHHHHHHHHHHHhhhhHHHHHHHHHHh--hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 4567788888888888888777543221 1112222224555566655565565555555544
No 201
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=99.18 E-value=3.4e-10 Score=75.38 Aligned_cols=95 Identities=15% Similarity=0.072 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhc-C-CCHHHHHHHHHHHHhcCCHHHHHH
Q psy12642 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKN---KIPEAIKELTEYLKKF-M-TDQETWQELCDLYLSEGDYAKAVF 89 (201)
Q Consensus 15 ~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~~~~~~A~~ 89 (201)
....+.+.|.+.+..+|.+..+.+.+|.++.+.+ +.++++.+++.+++.+ | +..++++.+|..|++.|+|++|..
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3445556666666666666666666666666665 4456666666666665 4 345666666666666666666666
Q ss_pred HHHHHhhcCCCCHHHHHHHH
Q psy12642 90 CMEELFLHHPHNHLLHQRYA 109 (201)
Q Consensus 90 ~~~~al~~~~~~~~~~~~la 109 (201)
+++++++.+|+|..+.....
T Consensus 93 y~~~lL~ieP~n~QA~~Lk~ 112 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAKELER 112 (152)
T ss_dssp HHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHH
Confidence 66666666666665544433
No 202
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.17 E-value=2e-09 Score=88.82 Aligned_cols=162 Identities=11% Similarity=-0.038 Sum_probs=134.4
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcC-----------cc-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKID-----------ET-----------NTAARKRKICILKAKNKIPEAIKELTEYL 61 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~-----------~~-----------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 61 (201)
+.|+......|++++|...|++++..- |. ...+|...+.+..+.|..+.|...|.+++
T Consensus 382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~ 461 (679)
T 4e6h_A 382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR 461 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456666778899999999999999752 42 44578888888888999999999999999
Q ss_pred Hh-cCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCc---
Q psy12642 62 KK-FMTDQETWQELCDLYLSEG-DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNE--- 136 (201)
Q Consensus 62 ~~-~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p--- 136 (201)
+. .+....+|...+.+....+ +++.|...|+.+++..|+++..+..++......| +.+.|..+|++++...|
T Consensus 462 ~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~---~~~~AR~lferal~~~~~~~ 538 (679)
T 4e6h_A 462 RLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVN---EESQVKSLFESSIDKISDSH 538 (679)
T ss_dssp HTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHTTTSSSTT
T ss_pred HhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCC---CHHHHHHHHHHHHHhcCCHH
Confidence 87 5555778888888777765 4999999999999999999999999999988999 99999999999999988
Q ss_pred ccHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH
Q psy12642 137 KNIRALYGLALSCHQVLTSAKCSAAKKKEISK 168 (201)
Q Consensus 137 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 168 (201)
.....|..........|+.+.+..-.++....
T Consensus 539 ~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 539 LLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45677888888888889888776555544433
No 203
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.17 E-value=5.6e-10 Score=68.80 Aligned_cols=71 Identities=10% Similarity=0.073 Sum_probs=38.5
Q ss_pred cCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc
Q psy12642 64 FMTDQETWQELCDLYLSEGD---YAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK 137 (201)
Q Consensus 64 ~p~~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 137 (201)
+|+++.++..+|.+++..++ .++|...+++++..+|+++.+++.+|..++..| +|++|+.+|+++++.+|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g---~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISF---RFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCC
Confidence 35555555555555543333 455555555555555555555555555555555 555555555555555554
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.16 E-value=1.2e-09 Score=72.40 Aligned_cols=108 Identities=12% Similarity=-0.021 Sum_probs=92.9
Q ss_pred CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH----cCCcccHHH
Q psy12642 48 NKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYT----QGGLENIEL 123 (201)
Q Consensus 48 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~~~~ 123 (201)
+++++|+.+|+++.+..+.. +. +|.+|...+.+++|+.+|+++... .++.+.+.+|.++.. .+ ++++
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~---d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMF--GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKK---DLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTT--HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCC---CHHH
T ss_pred cCHHHHHHHHHHHHcCCCHh--hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCc---cHHH
Confidence 46899999999999876444 44 999999999999999999999976 789999999999988 66 9999
Q ss_pred HHHHHHHHHcCCcccHHHHHHHHHHHHH----hhhhhhhhhhhHHHH
Q psy12642 124 AISHYLMAINLNEKNIRALYGLALSCHQ----VLTSAKCSAAKKKEI 166 (201)
Q Consensus 124 A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~ 166 (201)
|+.+|+++.+. .++.+.++|+.+|.. .++.++|..-.++..
T Consensus 80 A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa 124 (138)
T 1klx_A 80 AAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC 124 (138)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH
Confidence 99999999987 678999999999998 788888866555444
No 205
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.16 E-value=2.8e-09 Score=88.01 Aligned_cols=160 Identities=8% Similarity=-0.131 Sum_probs=119.9
Q ss_pred hHHHHHhhhhccCHHHHH-HHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----------CC----
Q psy12642 3 PIVYIIGCFHFFRYEEAL-EHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKF-----------MT---- 66 (201)
Q Consensus 3 ~~~~~~~~~~~~~~~~A~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----------p~---- 66 (201)
++-|+.-+...|+.++|. ..|++++...|.+...|...+.+....|+++.|..+|++++... |.
T Consensus 346 W~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~ 425 (679)
T 4e6h_A 346 WFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESA 425 (679)
T ss_dssp HHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhh
Confidence 344555566677777886 88888888888888888888888888888888888888887642 43
Q ss_pred -------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-CCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCccc
Q psy12642 67 -------DQETWQELCDLYLSEGDYAKAVFCMEELFLH-HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN 138 (201)
Q Consensus 67 -------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 138 (201)
...+|...+.+..+.|+.+.|...|.++++. .+..+..+...+.+....++ +++.|...|+.+++..|++
T Consensus 426 ~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~--d~e~Ar~ife~~Lk~~p~~ 503 (679)
T 4e6h_A 426 INQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISK--DTKTACKVLELGLKYFATD 503 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTS--CCHHHHHHHHHHHHHHTTC
T ss_pred hhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHCCCc
Confidence 2446777778877888888888888888876 44456667666766666541 4788888888888888888
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhHH
Q psy12642 139 IRALYGLALSCHQVLTSAKCSAAKKK 164 (201)
Q Consensus 139 ~~~~~~l~~~~~~~~~~~~a~~~~~~ 164 (201)
+..|...+......|+.++|+.-.+.
T Consensus 504 ~~~w~~y~~fe~~~~~~~~AR~lfer 529 (679)
T 4e6h_A 504 GEYINKYLDFLIYVNEESQVKSLFES 529 (679)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 88877777777778888777664433
No 206
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.15 E-value=4.3e-10 Score=69.31 Aligned_cols=74 Identities=12% Similarity=-0.027 Sum_probs=68.7
Q ss_pred CcccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHH
Q psy12642 30 DETNTAARKRKICILKAKNK---IPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHL 103 (201)
Q Consensus 30 ~~~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 103 (201)
+|+++.++..+|.+++..++ .++|...++++++.+|+++.++..+|..++..|+|++|+.++++++..+|.++.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 68999999999999987666 799999999999999999999999999999999999999999999999998543
No 207
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=99.13 E-value=1.1e-09 Score=72.89 Aligned_cols=100 Identities=15% Similarity=-0.024 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhcC-C-CCHHHHHHHHHHHHHcCCcccHHHH
Q psy12642 50 IPEAIKELTEYLKKFMTDQETWQELCDLYLSEG---DYAKAVFCMEELFLHH-P-HNHLLHQRYADILYTQGGLENIELA 124 (201)
Q Consensus 50 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~-~-~~~~~~~~la~~~~~~~~~~~~~~A 124 (201)
...+.+.|.+.+..+|.+.++.+.+|.++.+.+ +.++++..++.++..+ | ++..+++.+|..+++.+ +|++|
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~---~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK---EYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTS---CHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHcc---CHHHH
Confidence 456677788888888999999999999999988 6779999999999998 7 56889999999999999 99999
Q ss_pred HHHHHHHHcCCcccHHHHHHHHHHHHHh
Q psy12642 125 ISHYLMAINLNEKNIRALYGLALSCHQV 152 (201)
Q Consensus 125 ~~~~~~al~~~p~~~~~~~~l~~~~~~~ 152 (201)
+++++++++.+|++..+......+-.+.
T Consensus 91 ~~y~~~lL~ieP~n~QA~~Lk~~ie~~~ 118 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQAKELERLIDKAM 118 (152)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999877766665554
No 208
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.10 E-value=5.4e-10 Score=87.09 Aligned_cols=153 Identities=7% Similarity=-0.064 Sum_probs=121.6
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcCcccH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC------CHHHHHH
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKIDETNT------AARKRKICILKAKNKIPEAIKELTEYLKKFMT------DQETWQE 73 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~ 73 (201)
.+..|...|++++|++.+.+++...+... .+...++.++...|+++.|+..+++++...+. ...++..
T Consensus 61 l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (434)
T 4b4t_Q 61 LGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIK 140 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 45668899999999999999988654322 34556777888889999999999999875432 2678889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcC------CCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCccc-------HH
Q psy12642 74 LCDLYLSEGDYAKAVFCMEELFLHH------PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN-------IR 140 (201)
Q Consensus 74 l~~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~-------~~ 140 (201)
+|.+|...|+|++|+..+++++... +....++..+|.++...| ++++|...+++++...+.. ..
T Consensus 141 la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 141 LATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLR---NLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhC---cHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 9999999999999999999998652 233568899999999999 9999999999998765421 24
Q ss_pred HHHHHHHHHHHhhhhhhhhhh
Q psy12642 141 ALYGLALSCHQVLTSAKCSAA 161 (201)
Q Consensus 141 ~~~~l~~~~~~~~~~~~a~~~ 161 (201)
.+..++.++...+++.+|...
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~ 238 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSY 238 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHH
Confidence 556677777778888887553
No 209
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=99.06 E-value=3e-09 Score=66.88 Aligned_cols=76 Identities=21% Similarity=0.235 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC-------CCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHH
Q psy12642 68 QETWQELCDLYLSEGDYAKAVFCMEELFLHH-------PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIR 140 (201)
Q Consensus 68 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 140 (201)
+.-++.+|..++..|+|..|+.+|++++... +..+.++..+|.+++..| +++.|+.+++++++++|+++.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g---~~~~A~~~~~~al~l~P~~~~ 81 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQG---DLDKALLLTKKLLELDPEHQR 81 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhcCCCCHH
Confidence 4455667777777777777777777777642 234566777777777777 777777777777777777777
Q ss_pred HHHHHH
Q psy12642 141 ALYGLA 146 (201)
Q Consensus 141 ~~~~l~ 146 (201)
+..++.
T Consensus 82 ~~~n~~ 87 (104)
T 2v5f_A 82 ANGNLK 87 (104)
T ss_dssp HHHHHH
T ss_pred HHhhHH
Confidence 766665
No 210
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=99.04 E-value=4.3e-09 Score=77.20 Aligned_cols=107 Identities=17% Similarity=0.116 Sum_probs=92.9
Q ss_pred cCcccHHHHHHHHHHHHH---c--C------CHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHhc-----CCHHHHHHH
Q psy12642 29 IDETNTAARKRKICILKA---K--N------KIPEAIKELTEYLKKFMT--DQETWQELCDLYLSE-----GDYAKAVFC 90 (201)
Q Consensus 29 ~~~~~~~~~~~~a~~~~~---~--~------~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~-----~~~~~A~~~ 90 (201)
.+|+++.++++.|..... . | ....|...++++++++|+ +..+|..+|.+|... |+.++|..+
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 457788888888776543 1 3 257899999999999999 677999999999985 999999999
Q ss_pred HHHHhhcCCCC-HHHHHHHHHHHHHc-CCcccHHHHHHHHHHHHcCCccc
Q psy12642 91 MEELFLHHPHN-HLLHQRYADILYTQ-GGLENIELAISHYLMAINLNEKN 138 (201)
Q Consensus 91 ~~~al~~~~~~-~~~~~~la~~~~~~-~~~~~~~~A~~~~~~al~~~p~~ 138 (201)
|++++.++|+. ...++.+|..+... + +++++.++++++++.+|..
T Consensus 227 ferAL~LnP~~~id~~v~YA~~l~~~~g---d~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 227 FEHLTRYCSAHDPDHHITYADALCIPLN---NRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHCCTTCSHHHHHHHHHTTTTTT---CHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcC---CHHHHHHHHHHHHcCCCCC
Confidence 99999999975 99999999999884 8 9999999999999999874
No 211
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.03 E-value=3.8e-09 Score=84.08 Aligned_cols=120 Identities=14% Similarity=0.020 Sum_probs=97.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-----cCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-----CCCCHH---
Q psy12642 40 KICILKAKNKIPEAIKELTEYLKK-----FMTD---QETWQELCDLYLSEGDYAKAVFCMEELFLH-----HPHNHL--- 103 (201)
Q Consensus 40 ~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~~~~~~--- 103 (201)
.+..+..+|++++|+..+++++.. .|++ ...+..+|.+|..+|+|++|+.++++++.. .|+++.
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 394 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM 394 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 344567899999999999999984 4555 456788999999999999999999999964 455554
Q ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHcC-----CcccH---HHHHHHHHHHHHhhhhhhhhhhh
Q psy12642 104 LHQRYADILYTQGGLENIELAISHYLMAINL-----NEKNI---RALYGLALSCHQVLTSAKCSAAK 162 (201)
Q Consensus 104 ~~~~la~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~l~~~~~~~~~~~~a~~~~ 162 (201)
.+.++|.+|...| ++++|..+|++++++ .|+++ ....+++.++..++.+..|....
T Consensus 395 ~l~nLa~~~~~~G---~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~ 458 (490)
T 3n71_A 395 AVMRAGLTNWHAG---HIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMY 458 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999 999999999999964 45554 45678888888888888874433
No 212
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.98 E-value=1.2e-08 Score=64.15 Aligned_cols=76 Identities=11% Similarity=0.080 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHH
Q psy12642 34 TAARKRKICILKAKNKIPEAIKELTEYLKKF-------MTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQ 106 (201)
Q Consensus 34 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 106 (201)
+.-.+.+|..++..|++..|+.+++++++.. +..+.++..+|.+++++|++++|+..+++++..+|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 4556789999999999999999999999864 234788999999999999999999999999999999998877
Q ss_pred HHH
Q psy12642 107 RYA 109 (201)
Q Consensus 107 ~la 109 (201)
+++
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 776
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.83 E-value=4.6e-08 Score=76.71 Aligned_cols=84 Identities=15% Similarity=0.137 Sum_probs=40.1
Q ss_pred ccCHHHHHHHHHHHHhc-----CcccH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----cCCCH---HHHHHHHH
Q psy12642 13 FFRYEEALEHLETIIKI-----DETNT---AARKRKICILKAKNKIPEAIKELTEYLKK-----FMTDQ---ETWQELCD 76 (201)
Q Consensus 13 ~~~~~~A~~~~~~~l~~-----~~~~~---~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~---~~~~~l~~ 76 (201)
.|+|++|+..++++++. .|+++ .++..+|.+|..+|++++|+.++++++.. .|+++ ..+..+|.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 34555555555555542 12222 33444555555555555555555555442 22332 23444555
Q ss_pred HHHhcCCHHHHHHHHHHHhh
Q psy12642 77 LYLSEGDYAKAVFCMEELFL 96 (201)
Q Consensus 77 ~~~~~~~~~~A~~~~~~al~ 96 (201)
+|..+|++++|+..|++++.
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 55555555555555555543
No 214
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.81 E-value=6.3e-07 Score=71.56 Aligned_cols=141 Identities=9% Similarity=-0.146 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH------------------
Q psy12642 16 YEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDL------------------ 77 (201)
Q Consensus 16 ~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~------------------ 77 (201)
.++....|++++...|..+.+|...+......|+.+.|...+++++.. |.+...|...+..
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~ 273 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGE 273 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhc
Confidence 456778999999999999999999999999999999999999999999 9886655544332
Q ss_pred ----------------------HHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCC
Q psy12642 78 ----------------------YLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLN 135 (201)
Q Consensus 78 ----------------------~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~ 135 (201)
..+.++.+.|...|+++ ...+.....+...+.+.+..++ +.+.|...|+.+++..
T Consensus 274 ~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~--d~~~ar~ife~al~~~ 350 (493)
T 2uy1_A 274 AESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATG--SRATPYNIFSSGLLKH 350 (493)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHC--CSHHHHHHHHHHHHHC
T ss_pred cchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCC--ChHHHHHHHHHHHHHC
Confidence 22466788899999999 4333456677766766665551 5899999999999988
Q ss_pred cccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642 136 EKNIRALYGLALSCHQVLTSAKCSA 160 (201)
Q Consensus 136 p~~~~~~~~l~~~~~~~~~~~~a~~ 160 (201)
|+.+..+...+......|+.++++.
T Consensus 351 ~~~~~~~~~yid~e~~~~~~~~aR~ 375 (493)
T 2uy1_A 351 PDSTLLKEEFFLFLLRIGDEENARA 375 (493)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 9888877777777788888877754
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.79 E-value=3.8e-08 Score=77.20 Aligned_cols=85 Identities=12% Similarity=0.083 Sum_probs=46.6
Q ss_pred HcCCHHHHHHHHHHHHHh-----cCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-----CCCCHH---HHHHHH
Q psy12642 46 AKNKIPEAIKELTEYLKK-----FMTD---QETWQELCDLYLSEGDYAKAVFCMEELFLH-----HPHNHL---LHQRYA 109 (201)
Q Consensus 46 ~~~~~~~A~~~~~~~~~~-----~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~~~~~~---~~~~la 109 (201)
.+|++++|+..+++++.. .|++ ...+..+|.+|..+|+|++|+.++++++.. .|+++. .+.++|
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 445566666666665542 2333 234455556666666666666666666532 233332 455666
Q ss_pred HHHHHcCCcccHHHHHHHHHHHHc
Q psy12642 110 DILYTQGGLENIELAISHYLMAIN 133 (201)
Q Consensus 110 ~~~~~~~~~~~~~~A~~~~~~al~ 133 (201)
.++...| ++++|+.+|+++++
T Consensus 379 ~~~~~~g---~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 379 KLQLHQG---MFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHHhcC---CHHHHHHHHHHHHH
Confidence 6666666 66666666666654
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.78 E-value=5e-07 Score=68.83 Aligned_cols=137 Identities=11% Similarity=-0.051 Sum_probs=101.8
Q ss_pred HHhcCcccHHHH--HHHHHHHHHcCC---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH----HHHHH----HHH
Q psy12642 26 IIKIDETNTAAR--KRKICILKAKNK---IPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDY----AKAVF----CME 92 (201)
Q Consensus 26 ~l~~~~~~~~~~--~~~a~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~----~~A~~----~~~ 92 (201)
+....|.++.+| +..|.-++..++ ..+|+.+|+++++++|+++.++..++.+|.....+ ..... .+.
T Consensus 186 ~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~ 265 (372)
T 3ly7_A 186 LQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEID 265 (372)
T ss_dssp HHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHH
Confidence 334456655443 345565665544 58899999999999999999999888777521111 11111 222
Q ss_pred --HHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q psy12642 93 --ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEI 166 (201)
Q Consensus 93 --~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 166 (201)
.++..+|.++.++..++..+...| ++++|+..+++++.++|+ ..++..++.++...|+.++|.....+..
T Consensus 266 a~~a~~~~~~~a~~~~alal~~l~~g---d~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 266 NIVTLPELNNLSIIYQIKAVSALVKG---KTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp HHHTCGGGTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcccCCcCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 233567999999999999998899 999999999999999976 6788899999999999999977665544
No 217
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.78 E-value=1.2e-07 Score=60.89 Aligned_cols=94 Identities=14% Similarity=0.045 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhc-C-CCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12642 16 YEEALEHLETIIKIDETNTAARKRKICILKAKNKIPE---AIKELTEYLKKF-M-TDQETWQELCDLYLSEGDYAKAVFC 90 (201)
Q Consensus 16 ~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~---A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~~~~~~A~~~ 90 (201)
...+...|...+..++.+..+.+.+|+++.+.++... ++.+++..++.. | ..-+..+.+|..+++.|+|++|..+
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3445555555555555566666666666666655544 666666665554 3 2345566666666666666666666
Q ss_pred HHHHhhcCCCCHHHHHHHH
Q psy12642 91 MEELFLHHPHNHLLHQRYA 109 (201)
Q Consensus 91 ~~~al~~~~~~~~~~~~la 109 (201)
++.+++..|+|..+.....
T Consensus 97 ~~~lL~~eP~n~QA~~Lk~ 115 (126)
T 1nzn_A 97 VRGLLQTEPQNNQAKELER 115 (126)
T ss_dssp HHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHH
Confidence 6666666666665544433
No 218
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.77 E-value=4.5e-08 Score=71.88 Aligned_cols=89 Identities=10% Similarity=-0.010 Sum_probs=81.2
Q ss_pred hccCHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHh-cC
Q psy12642 12 HFFRYEEALEHLETIIKIDET--NTAARKRKICILKAK-----NKIPEAIKELTEYLKKFMTD-QETWQELCDLYLS-EG 82 (201)
Q Consensus 12 ~~~~~~~A~~~~~~~l~~~~~--~~~~~~~~a~~~~~~-----~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~-~~ 82 (201)
..+...+|...++++++.+|+ +..+|..+|.+|... |+.++|..+|+++++++|+. ...++..|..+.. +|
T Consensus 175 Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 175 LPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Confidence 345678899999999999999 677999999999995 99999999999999999975 9999999999988 49
Q ss_pred CHHHHHHHHHHHhhcCCC
Q psy12642 83 DYAKAVFCMEELFLHHPH 100 (201)
Q Consensus 83 ~~~~A~~~~~~al~~~~~ 100 (201)
+++++..++++++..+|.
T Consensus 255 d~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CHHHHHHHHHHHHHCCGG
T ss_pred CHHHHHHHHHHHHcCCCC
Confidence 999999999999998876
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.70 E-value=2.9e-07 Score=72.16 Aligned_cols=98 Identities=15% Similarity=0.111 Sum_probs=74.5
Q ss_pred HHhhhhccCHHHHHHHHHHHHhcC-----ccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----cCCCH---HH
Q psy12642 7 IIGCFHFFRYEEALEHLETIIKID-----ETN---TAARKRKICILKAKNKIPEAIKELTEYLKK-----FMTDQ---ET 70 (201)
Q Consensus 7 ~~~~~~~~~~~~A~~~~~~~l~~~-----~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~---~~ 70 (201)
+..+..+|+|++|+..++++++.. |++ ..++..+|.+|..+|++++|+.++++++.. .|+++ ..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344667888999999999888752 444 466777888888899999999999888863 34544 45
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhc-----CCCCHHH
Q psy12642 71 WQELCDLYLSEGDYAKAVFCMEELFLH-----HPHNHLL 104 (201)
Q Consensus 71 ~~~l~~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~ 104 (201)
++.+|.+|..+|++++|+..+++++.+ .|+++.+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 412 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLI 412 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 777889999999999999999988864 4666554
No 220
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.67 E-value=1e-05 Score=64.69 Aligned_cols=153 Identities=8% Similarity=-0.013 Sum_probs=122.3
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHhc-CCCHHHHHHH
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKID-ETNTAARKRKICILKAKN---------KIPEAIKELTEYLKKF-MTDQETWQEL 74 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~~a~~~~~~~---------~~~~A~~~~~~~~~~~-p~~~~~~~~l 74 (201)
.+..|.+.|+.++|++.|+.+.+.. +-+..++..+..++...+ ..+.|...|++..... +.|...|..+
T Consensus 32 ~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~l 111 (501)
T 4g26_A 32 KLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNG 111 (501)
T ss_dssp HHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 3567889999999999999998864 224556666666665444 3688999999877643 3467788999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCC--cccHHHHHHHHHHHHH
Q psy12642 75 CDLYLSEGDYAKAVFCMEELFLHH-PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLN--EKNIRALYGLALSCHQ 151 (201)
Q Consensus 75 ~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~ 151 (201)
...|.+.|++++|...|++..... +.+...+..+-..+...| +.++|.+.|....+.. |+ ...+..+..+|.+
T Consensus 112 I~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g---~~~~A~~l~~~M~~~G~~Pd-~~ty~~Li~~~~~ 187 (501)
T 4g26_A 112 ARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKG---DADKAYEVDAHMVESEVVPE-EPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCC---CHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhh
Confidence 999999999999999999988652 335778888888999999 9999999999987654 44 7789999999999
Q ss_pred hhhhhhhhhhh
Q psy12642 152 VLTSAKCSAAK 162 (201)
Q Consensus 152 ~~~~~~a~~~~ 162 (201)
.|+.++|..-.
T Consensus 188 ~g~~d~A~~ll 198 (501)
T 4g26_A 188 TKNADKVYKTL 198 (501)
T ss_dssp TTCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 99999996533
No 221
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.64 E-value=7.1e-08 Score=75.66 Aligned_cols=93 Identities=9% Similarity=-0.030 Sum_probs=77.7
Q ss_pred HcCCHHHHHHHHHHHHHh-----cCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhc-----CCCCHH---HHHHHH
Q psy12642 46 AKNKIPEAIKELTEYLKK-----FMTDQ---ETWQELCDLYLSEGDYAKAVFCMEELFLH-----HPHNHL---LHQRYA 109 (201)
Q Consensus 46 ~~~~~~~A~~~~~~~~~~-----~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~~~~~~---~~~~la 109 (201)
..|++++|+..+++++.. .|+++ ..+..+|.+|..+|+|++|+.++++++.. .|+++. .+.++|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 468899999999999884 46664 56778999999999999999999999964 455554 688999
Q ss_pred HHHHHcCCcccHHHHHHHHHHHHcC-----CcccHHH
Q psy12642 110 DILYTQGGLENIELAISHYLMAINL-----NEKNIRA 141 (201)
Q Consensus 110 ~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~ 141 (201)
.+|...| ++++|+.+|++++++ .|+++..
T Consensus 390 ~~~~~qg---~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLE---NKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhcc---CHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 9999999 999999999999874 4666543
No 222
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.63 E-value=1e-06 Score=56.57 Aligned_cols=100 Identities=13% Similarity=-0.063 Sum_probs=83.9
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHhhcC-C-CCHHHHHHHHHHHHHcCCcccHHH
Q psy12642 49 KIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAK---AVFCMEELFLHH-P-HNHLLHQRYADILYTQGGLENIEL 123 (201)
Q Consensus 49 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~---A~~~~~~al~~~-~-~~~~~~~~la~~~~~~~~~~~~~~ 123 (201)
....+...|.+....++.+..+.+.+|.++.+..+... ++..++..+..+ | ..-..++.+|..+++.| +|++
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg---~Y~~ 92 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK---EYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhh---hHHH
Confidence 34566677777777788899999999999999887766 999999999876 4 45678999999999999 9999
Q ss_pred HHHHHHHHHcCCcccHHHHHHHHHHHHH
Q psy12642 124 AISHYLMAINLNEKNIRALYGLALSCHQ 151 (201)
Q Consensus 124 A~~~~~~al~~~p~~~~~~~~l~~~~~~ 151 (201)
|+++++..++..|++..+......+-.+
T Consensus 93 A~~~~~~lL~~eP~n~QA~~Lk~~i~~~ 120 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKELERLIDKA 120 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999887655555443
No 223
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.61 E-value=5.3e-06 Score=66.25 Aligned_cols=153 Identities=14% Similarity=0.011 Sum_probs=116.8
Q ss_pred hHHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHH---------------------------------------
Q psy12642 3 PIVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICI--------------------------------------- 43 (201)
Q Consensus 3 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~--------------------------------------- 43 (201)
++-|+.-+...|+.++|...|++++.. |.+...+...+..
T Consensus 216 W~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~ 294 (493)
T 2uy1_A 216 YFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLN 294 (493)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHH
Confidence 455666677889999999999999999 8876555443332
Q ss_pred -HHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccH
Q psy12642 44 -LKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG-DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENI 121 (201)
Q Consensus 44 -~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~ 121 (201)
....+..+.|...|.++ ...+....+|...+.+....+ +.+.|...|+.+++..|+++..+..++......| +.
T Consensus 295 ~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~---~~ 370 (493)
T 2uy1_A 295 YVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIG---DE 370 (493)
T ss_dssp HHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT---CH
T ss_pred HHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC---CH
Confidence 22356688899999998 433345677877777777666 6999999999999999999998888888888899 99
Q ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHH
Q psy12642 122 ELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKK 164 (201)
Q Consensus 122 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 164 (201)
+.|...|+++ +.....|......-...|+.+.+..-..+
T Consensus 371 ~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~ 409 (493)
T 2uy1_A 371 ENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQ 409 (493)
T ss_dssp HHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999998 34566777777777777877666443333
No 224
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.46 E-value=3.6e-06 Score=56.47 Aligned_cols=132 Identities=9% Similarity=-0.074 Sum_probs=67.1
Q ss_pred chHHHHHhhhhccCHHHHHHHHHHHHhcCcccH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---CCCHH
Q psy12642 2 APIVYIIGCFHFFRYEEALEHLETIIKIDETNT---------AARKRKICILKAKNKIPEAIKELTEYLKKF---MTDQE 69 (201)
Q Consensus 2 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~---------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---p~~~~ 69 (201)
+.+-.+..+++.|.|+.|+-..+.++....+++ .++..+|..++..++|..|...|+++++.. +..+.
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 344455566666777777766666555432222 355666667777777777777777665421 21211
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Q psy12642 70 TWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSC 149 (201)
Q Consensus 70 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 149 (201)
....++ ....++.. .. .+.+.++.+.++.|+...+ ++++|+..++.. ......++....||..|
T Consensus 102 ~~~~~~----~~ss~p~s-------~~-~~~e~Elkykia~C~~~l~---~~~~Ai~~Le~I-p~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 102 VRPSTG----NSASTPQS-------QC-LPSEIEVKYKLAECYTVLK---QDKDAIAILDGI-PSRQRTPKINMLLANLY 165 (167)
T ss_dssp --------------------------C-CCCHHHHHHHHHHHHHHTT---CHHHHHHHHHTS-CGGGCCHHHHHHHHHHC
T ss_pred cccccc----ccCCCccc-------cc-ccchHHHHHHHHHHHHHHC---CHHHHHHHHhcC-CchhcCHHHHHHHHHHh
Confidence 100000 00000000 00 1223466777788888888 788888777753 22233455666666655
No 225
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.39 E-value=1.3e-05 Score=52.78 Aligned_cols=120 Identities=12% Similarity=0.094 Sum_probs=95.0
Q ss_pred cCcccHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHhcCCC--------HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12642 29 IDETNTAARKRKICILKAKNKI------PEAIKELTEYLKKFMTD--------QETWQELCDLYLSEGDYAKAVFCMEEL 94 (201)
Q Consensus 29 ~~~~~~~~~~~~a~~~~~~~~~------~~A~~~~~~~~~~~p~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~a 94 (201)
..|++++.|.......-..|+. +.-++.|++++..-|.. ...|...+.. ...++.++|...|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 5688999998888888888998 88889999999877754 3355556644 5668999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhh
Q psy12642 95 FLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL 153 (201)
Q Consensus 95 l~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 153 (201)
+.+....+.+|...|....+.| +...|.+.+.+++.+.|..... ...+..-.+.|
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqg---nl~kARkILg~AiG~~~k~~~~-le~a~~nl~~~ 141 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQG---NVKKSKQLLQKAVERGAVPLEM-LEIALRNLNLQ 141 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTTCBCHHH-HHHHHHHHHTT
T ss_pred HHHhHHHHHHHHHHHHHHHHcc---cHHHHHHHHHHHhccCCCcHHH-HHHHHHhhhcC
Confidence 9888888999999999999999 9999999999999999985543 33444333444
No 226
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=98.30 E-value=2.5e-05 Score=50.38 Aligned_cols=79 Identities=19% Similarity=0.147 Sum_probs=57.8
Q ss_pred cHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHH
Q psy12642 33 NTAARKRKICILKAKNKI---PEAIKELTEYLKKFMT-DQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRY 108 (201)
Q Consensus 33 ~~~~~~~~a~~~~~~~~~---~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 108 (201)
++.+.+.+|.++.+..+. ..++.+++..++..|. .-+.++.+|..+++.|+|++|..+.+.++...|+|..+....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 567777788777776554 4577777777777774 367777788888888888888888888888888887766555
Q ss_pred HHH
Q psy12642 109 ADI 111 (201)
Q Consensus 109 a~~ 111 (201)
..+
T Consensus 119 ~~I 121 (134)
T 3o48_A 119 SMV 121 (134)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 227
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.25 E-value=9.5e-05 Score=48.30 Aligned_cols=80 Identities=19% Similarity=0.135 Sum_probs=57.0
Q ss_pred cccHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHH
Q psy12642 31 ETNTAARKRKICILKAKNKI---PEAIKELTEYLKKFMT-DQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQ 106 (201)
Q Consensus 31 ~~~~~~~~~~a~~~~~~~~~---~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 106 (201)
+-++.+.+.+++++....+. .+++.+++..++..|. .-+..+.+|..+++.|+|++|..+.+.+++..|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 44567777777777776654 4577777777777774 3567777777788888888888888888888887776655
Q ss_pred HHHH
Q psy12642 107 RYAD 110 (201)
Q Consensus 107 ~la~ 110 (201)
....
T Consensus 116 Lk~~ 119 (144)
T 1y8m_A 116 LKSM 119 (144)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 228
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.25 E-value=1.8e-05 Score=53.09 Aligned_cols=114 Identities=11% Similarity=0.017 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHhhcC---CCCH
Q psy12642 35 AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ---------ETWQELCDLYLSEGDYAKAVFCMEELFLHH---PHNH 102 (201)
Q Consensus 35 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~~ 102 (201)
++++.-...+...|.|+.|+-....++....+++ .+...+|++++.+++|..|...|+++++.. +.++
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4555667778889999999998888766543322 367889999999999999999999998653 2332
Q ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhH
Q psy12642 103 LLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKK 163 (201)
Q Consensus 103 ~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 163 (201)
.....++. .. .... ...+ +.+.+..+.++.||..+++...|.....
T Consensus 101 s~~~~~~~----~s---s~p~-------s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le 146 (167)
T 3ffl_A 101 KVRPSTGN----SA---STPQ-------SQCL-PSEIEVKYKLAECYTVLKQDKDAIAILD 146 (167)
T ss_dssp ------------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred Cccccccc----cC---CCcc-------cccc-cchHHHHHHHHHHHHHHCCHHHHHHHHh
Confidence 22111211 11 1111 1223 4567888999999999999999977554
No 229
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.16 E-value=3.2e-05 Score=50.95 Aligned_cols=103 Identities=9% Similarity=-0.042 Sum_probs=86.1
Q ss_pred chHHHHHhhhhccCH------HHHHHHHHHHHhcCccc--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q psy12642 2 APIVYIIGCFHFFRY------EEALEHLETIIKIDETN--------TAARKRKICILKAKNKIPEAIKELTEYLKKFMTD 67 (201)
Q Consensus 2 ~~~~~~~~~~~~~~~------~~A~~~~~~~l~~~~~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~ 67 (201)
.+..|+..+.+.|+. ++-++.|++++..-|-. ...|...+.. ...++.+.|...|+.+++.....
T Consensus 15 ~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkF 93 (161)
T 4h7y_A 15 DWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKKF 93 (161)
T ss_dssp HHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTB
T ss_pred HHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHH
Confidence 356677778888999 89999999999876542 3555556644 56699999999999999988888
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHH
Q psy12642 68 QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLH 105 (201)
Q Consensus 68 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 105 (201)
+.+|...|+.-.++|+..+|.+.+.+++.+.|.....+
T Consensus 94 AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 94 AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 99999999999999999999999999999999865543
No 230
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.10 E-value=0.00023 Score=56.95 Aligned_cols=134 Identities=8% Similarity=-0.066 Sum_probs=106.7
Q ss_pred ccCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12642 13 FFRYEEALEHLETIIKID-ETNTAARKRKICILKAKNKIPEAIKELTEYLKKF-MTDQETWQELCDLYLSEGDYAKAVFC 90 (201)
Q Consensus 13 ~~~~~~A~~~~~~~l~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~ 90 (201)
.+..++|.+.|+...... +-+..++..+...+...|++++|..++++..+.. +.+...|..+-..|.+.|+.++|...
T Consensus 83 ~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l 162 (501)
T 4g26_A 83 NPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEV 162 (501)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHH
Confidence 345789999999988764 2356788889999999999999999999988753 34678888899999999999999999
Q ss_pred HHHHhhcC-CCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHc--CCcccHHHHHHHHHHHH
Q psy12642 91 MEELFLHH-PHNHLLHQRYADILYTQGGLENIELAISHYLMAIN--LNEKNIRALYGLALSCH 150 (201)
Q Consensus 91 ~~~al~~~-~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~ 150 (201)
|++..... ..+...+..+-..+...| +.++|.+.+++.-+ ..|+ ...+..+...+.
T Consensus 163 ~~~M~~~G~~Pd~~ty~~Li~~~~~~g---~~d~A~~ll~~Mr~~g~~ps-~~T~~~l~~~F~ 221 (501)
T 4g26_A 163 DAHMVESEVVPEEPELAALLKVSMDTK---NADKVYKTLQRLRDLVRQVS-KSTFDMIEEWFK 221 (501)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHTSSBC-HHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHhhCC---CHHHHHHHHHHHHHhCCCcC-HHHHHHHHHHHh
Confidence 99988653 235778888999999999 99999999998764 4455 344444444444
No 231
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=98.04 E-value=0.00019 Score=46.30 Aligned_cols=85 Identities=7% Similarity=-0.049 Sum_probs=71.1
Q ss_pred CCHHHHHHHHHHHHhcCCH---HHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHH
Q psy12642 66 TDQETWQELCDLYLSEGDY---AKAVFCMEELFLHHPH-NHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRA 141 (201)
Q Consensus 66 ~~~~~~~~l~~~~~~~~~~---~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 141 (201)
-++.+.+.+|.++.+..+. .+++..++..+..+|. .-..++.+|..+++.| +|++|+++.+..++..|++..+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklg---dY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLG---EYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHTTCTTCHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhh---hHHHHHHHHHHHHhhCCCCHHH
Confidence 3578888898888877654 5799999999998884 4678999999999999 9999999999999999999988
Q ss_pred HHHHHHHHHHhh
Q psy12642 142 LYGLALSCHQVL 153 (201)
Q Consensus 142 ~~~l~~~~~~~~ 153 (201)
......+-.++.
T Consensus 115 ~~Lk~~Ie~ki~ 126 (134)
T 3o48_A 115 GALKSMVEDKIQ 126 (134)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 766655555443
No 232
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.00 E-value=0.00071 Score=44.18 Aligned_cols=84 Identities=7% Similarity=-0.058 Sum_probs=70.7
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHH
Q psy12642 65 MTDQETWQELCDLYLSEGDY---AKAVFCMEELFLHHPH-NHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIR 140 (201)
Q Consensus 65 p~~~~~~~~l~~~~~~~~~~---~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 140 (201)
+.++.+.+.++.++.+..+. .+++..++..+...|. .-..++.+|..+++.+ +|++|.++.+..++..|++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~---~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLG---EYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhh---hHHHHHHHHHHHHhcCCCcHH
Confidence 45688899999998887764 5799999999998884 5668999999999999 999999999999999999988
Q ss_pred HHHHHHHHHHH
Q psy12642 141 ALYGLALSCHQ 151 (201)
Q Consensus 141 ~~~~l~~~~~~ 151 (201)
+......+-.+
T Consensus 113 A~~Lk~~Ie~~ 123 (144)
T 1y8m_A 113 VGALKSMVEDK 123 (144)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 76655555444
No 233
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=97.62 E-value=0.0012 Score=55.06 Aligned_cols=115 Identities=16% Similarity=0.039 Sum_probs=85.5
Q ss_pred ccC-HHHHHHHHHHHHhcCcccHHHHHHHHHHHH--Hc-CCHHHHHHHHHHHHHh--------cCCC----------HHH
Q psy12642 13 FFR-YEEALEHLETIIKIDETNTAARKRKICILK--AK-NKIPEAIKELTEYLKK--------FMTD----------QET 70 (201)
Q Consensus 13 ~~~-~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~--~~-~~~~~A~~~~~~~~~~--------~p~~----------~~~ 70 (201)
.++ ++.|+..+++....+|.....+ ..+.+.. .. .+--+|+..+.+.++. .+.+ ...
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~~~-~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDIYY-KTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchhHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 344 5889999999999999765333 2233222 12 3345677777777642 2222 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Q psy12642 71 WQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMA 131 (201)
Q Consensus 71 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~a 131 (201)
+..-+..+...|+++-|+.+.++++...|.....|+.++.+|..++ +++.|+-.+..+
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~---d~e~ALLtLNSc 397 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKE---EYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT---CHHHHHHHHHHS
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhc---cHHHHHHHHhcC
Confidence 4455778889999999999999999999999999999999999999 999999887765
No 234
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=97.47 E-value=0.01 Score=40.13 Aligned_cols=126 Identities=17% Similarity=0.155 Sum_probs=91.2
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGD 83 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 83 (201)
+.-|...++-.+|+.++-.- ..+ -|..+.....++..+.-.|.+..++-++.. -+.....+.-+.||.+.++
T Consensus 6 ~~kI~Ks~kY~dYdt~~fLs-a~L--~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKd 77 (242)
T 3kae_A 6 IGKICKSIRYRDYETAIFLA-ACL--LPCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKD 77 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHH-HHH--C----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhcccccHHHHHH-HHH--ccCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHH
Confidence 45667778888998887443 332 344445566777788889999988876542 3445666667889999999
Q ss_pred HHHHHHHHHHHhh--c---------------CCCCHH-HHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHH
Q psy12642 84 YAKAVFCMEELFL--H---------------HPHNHL-LHQRYADILYTQGGLENIELAISHYLMAINLNEKNIR 140 (201)
Q Consensus 84 ~~~A~~~~~~al~--~---------------~~~~~~-~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 140 (201)
|.+|+.+++..+. . +|.+.. .+..+|.++...| +.++|+.+|...+..+|-.+.
T Consensus 78 YkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g---~r~EaI~y~~~Sf~~~~lf~~ 149 (242)
T 3kae_A 78 YKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSG---YREEGIGHYVRSFGKSFLFSP 149 (242)
T ss_dssp HHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhc---CHHHhhhHhhhhcCCccccch
Confidence 9999999999982 2 234443 4567899999999 999999999999988875443
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=97.42 E-value=0.00082 Score=56.06 Aligned_cols=111 Identities=16% Similarity=0.114 Sum_probs=81.6
Q ss_pred HcCC-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHhh--------cCCCCH----------H
Q psy12642 46 AKNK-IPEAIKELTEYLKKFMTDQETWQELCDLYL---SEGDYAKAVFCMEELFL--------HHPHNH----------L 103 (201)
Q Consensus 46 ~~~~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~---~~~~~~~A~~~~~~al~--------~~~~~~----------~ 103 (201)
..++ ++.|+..+++....+|.....+. .+.+.. ...+--+|+..+.+.++ ..+.+. .
T Consensus 260 ~t~~~~~~a~~~le~L~~~~p~~~~~~~-~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 338 (754)
T 4gns_B 260 ITPSLVDFTIDYLKGLTKKDPIHDIYYK-TAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSD 338 (754)
T ss_dssp TCGGGHHHHHHHHHHHHHHCGGGHHHHH-HHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhhCCchhHHHH-HHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchH
Confidence 3455 58899999999999887644332 222211 22345667777777763 223332 2
Q ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642 104 LHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSA 160 (201)
Q Consensus 104 ~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 160 (201)
.+..-+..+...+ +++-|+.+.++++...|.+...|+.|+.||..+|+++.|.-
T Consensus 339 LL~~Qa~FLl~K~---~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALL 392 (754)
T 4gns_B 339 LLNIQTNFLLNRG---DYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALF 392 (754)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhccC---cHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHH
Confidence 4455577777888 99999999999999999999999999999999999999954
No 236
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=97.05 E-value=0.0081 Score=47.86 Aligned_cols=81 Identities=16% Similarity=0.036 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Q psy12642 70 TWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSC 149 (201)
Q Consensus 70 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 149 (201)
....+|.+....+.+..|..+|.+|+.+.|++...+..+|.+....+ +.-+|+-+|.+++......+.+..++...+
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~---~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKG---DHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTT---CHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhccc---ccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence 44567888888888999999999999999999999999999998888 888899999999988777788888888888
Q ss_pred HHhh
Q psy12642 150 HQVL 153 (201)
Q Consensus 150 ~~~~ 153 (201)
.+.-
T Consensus 231 ~~~~ 234 (497)
T 1ya0_A 231 SKAL 234 (497)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 7643
No 237
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=97.00 E-value=0.0099 Score=47.38 Aligned_cols=79 Identities=13% Similarity=0.032 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q psy12642 35 AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILY 113 (201)
Q Consensus 35 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 113 (201)
.++..+|.+......+..|..+|.++....|++...+..+|.+....|+.-+|+.+|-+++......+.+..++...+.
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 4566788998889999999999999999999999999999999999999999999999999776666776666665554
No 238
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.99 E-value=0.0039 Score=49.57 Aligned_cols=148 Identities=12% Similarity=0.000 Sum_probs=68.8
Q ss_pred HHHHhhhhccCHHHHHHHHHHHHh-----------cCcccHHHHHHHHHHHHHcCCHHHH----------HHHHHHHHHh
Q psy12642 5 VYIIGCFHFFRYEEALEHLETIIK-----------IDETNTAARKRKICILKAKNKIPEA----------IKELTEYLKK 63 (201)
Q Consensus 5 ~~~~~~~~~~~~~~A~~~~~~~l~-----------~~~~~~~~~~~~a~~~~~~~~~~~A----------~~~~~~~~~~ 63 (201)
+..+.+++.+++++|.++-...+. .++-...+|+..+.++-..|+.... ...+-.+++.
T Consensus 141 L~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rt 220 (523)
T 4b4t_S 141 LVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKI 220 (523)
T ss_dssp --------------------------------------------------------------CHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHH
Confidence 344567889999999988776651 1233446666666666666665442 2233333332
Q ss_pred -----cCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-------HHHHHHHHHHHHHcCCcccHHHHHHHHHH
Q psy12642 64 -----FMTD-QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHN-------HLLHQRYADILYTQGGLENIELAISHYLM 130 (201)
Q Consensus 64 -----~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~la~~~~~~~~~~~~~~A~~~~~~ 130 (201)
++.. ..++..+-..|...+.|+.|.....++. .|.+ ...++.+|.++...+ +|.+|.+++..
T Consensus 221 a~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~---~Y~eA~~~L~~ 295 (523)
T 4b4t_S 221 ASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQL---DYSTANEYIIA 295 (523)
T ss_dssp CCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhc---cHHHHHHHHHH
Confidence 2222 5577778899999999999999999986 3422 346788899999999 99999999999
Q ss_pred HHcCCcccH-------HHHHHHHHHHHHhhhhhh
Q psy12642 131 AINLNEKNI-------RALYGLALSCHQVLTSAK 157 (201)
Q Consensus 131 al~~~p~~~-------~~~~~l~~~~~~~~~~~~ 157 (201)
|+...|.+. .++..+..|-.-+|+...
T Consensus 296 A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~iP~ 329 (523)
T 4b4t_S 296 AIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPE 329 (523)
T ss_dssp HTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHhCCcchhhhhHHHHHHHHHHhHHhhcCCCCC
Confidence 999887532 233344455455676543
No 239
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.91 E-value=0.068 Score=38.84 Aligned_cols=120 Identities=17% Similarity=0.090 Sum_probs=84.0
Q ss_pred HhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHH
Q psy12642 8 IGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKA 87 (201)
Q Consensus 8 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A 87 (201)
..+++.|+.++|++.....++.+|.+......+..+++-.|+++.|...++.+.+++|.....-..+..+ =.|
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l-------I~a 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL-------VKA 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH-------HHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH-------HHH
Confidence 3567889999999999999999999999999999999999999999999999999999875432221111 011
Q ss_pred HHHHHHHhh--c------CCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc
Q psy12642 88 VFCMEELFL--H------HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK 137 (201)
Q Consensus 88 ~~~~~~al~--~------~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 137 (201)
...=.+.+. . .|..+.....-+......| +.++|...-.++++..|.
T Consensus 78 E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G---~~~~A~~lr~~A~e~ap~ 132 (273)
T 1zbp_A 78 AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQ---DYEQVSELALQIEELRQE 132 (273)
T ss_dssp HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcC---CHHHHHHHHHHHHhcCcc
Confidence 111122221 1 1222223344455556678 899999999999887664
No 240
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.89 E-value=0.02 Score=44.18 Aligned_cols=61 Identities=15% Similarity=0.181 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHc
Q psy12642 70 TWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAIN 133 (201)
Q Consensus 70 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~ 133 (201)
+...++..+...|++.+++..+..++..+|.+..++..+-.++...| +..+|++.|+++-+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~G---r~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSD---RQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH
Confidence 44556777778888888888888888888888888888888888888 88888877777543
No 241
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.88 E-value=0.059 Score=45.06 Aligned_cols=102 Identities=17% Similarity=0.109 Sum_probs=64.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--------cCCCCHHHHHHHHHHHHH
Q psy12642 43 ILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFL--------HHPHNHLLHQRYADILYT 114 (201)
Q Consensus 43 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--------~~~~~~~~~~~la~~~~~ 114 (201)
.....|+++.|.+..+ ..+++..|..+|..+...++++.|..+|.++-. ....+...+..++.....
T Consensus 661 ~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 661 LALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp HHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455677776666543 346788999999999999999999999987521 123445555566666666
Q ss_pred cCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642 115 QGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSA 160 (201)
Q Consensus 115 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 160 (201)
.| ++..|...|.+. ++ ......+|...+++++|..
T Consensus 736 ~~---~~~~A~~~~~~~-----g~---~~~a~~~~~~~~~~~~A~~ 770 (814)
T 3mkq_A 736 TG---KFNLAFNAYWIA-----GD---IQGAKDLLIKSQRFSEAAF 770 (814)
T ss_dssp TT---CHHHHHHHHHHH-----TC---HHHHHHHHHHTTCHHHHHH
T ss_pred cC---chHHHHHHHHHc-----CC---HHHHHHHHHHcCChHHHHH
Confidence 66 666666665542 11 1234455666676666644
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.81 E-value=0.043 Score=42.29 Aligned_cols=61 Identities=10% Similarity=-0.060 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhhhhHHHHH
Q psy12642 104 LHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEIS 167 (201)
Q Consensus 104 ~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 167 (201)
+...++..+...| ++.+++..+..++..+|-+...+..+..++...|+..+|.........
T Consensus 173 a~~~~~~~~l~~g---~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 173 AHTAKAEAEIACG---RASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455666777777 888888888888888887777888888888888888777665554443
No 243
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.80 E-value=0.06 Score=36.61 Aligned_cols=42 Identities=14% Similarity=0.117 Sum_probs=21.3
Q ss_pred ccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12642 13 FFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTE 59 (201)
Q Consensus 13 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 59 (201)
.|+++.|.+..+.. ++...|..+|......|+++-|..+|.+
T Consensus 18 lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 18 YGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp TTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 45555555544432 3344555555555555555555555544
No 244
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=96.57 E-value=0.053 Score=46.89 Aligned_cols=94 Identities=9% Similarity=-0.021 Sum_probs=74.7
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhc----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCHHHHHHHHHHH
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKI----DETNTAARKRKICILKAKNKIPEAIKELTEYLKKF-MTDQETWQELCDLY 78 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~ 78 (201)
-.++.+|.+.|+.++|...|+...+. -.-+...|..+...++..|+.++|.+.|++..... ..|...|..+-.++
T Consensus 131 naLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~gl 210 (1134)
T 3spa_A 131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCM 210 (1134)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 35678899999999999999775432 23357788889999999999999999999987743 34677788888888
Q ss_pred HhcCC-HHHHHHHHHHHhhc
Q psy12642 79 LSEGD-YAKAVFCMEELFLH 97 (201)
Q Consensus 79 ~~~~~-~~~A~~~~~~al~~ 97 (201)
.+.|+ .++|...|++....
T Consensus 211 cK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 211 GRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHTCCHHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHc
Confidence 88887 47888999888764
No 245
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.57 E-value=0.089 Score=35.61 Aligned_cols=94 Identities=21% Similarity=0.099 Sum_probs=75.0
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h---------------cCC
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLK--K---------------FMT 66 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~---------------~p~ 66 (201)
+++.+.++-.|.|.+++-.+.. -+.....+..+.||...+++..|+..++..+. . +|.
T Consensus 37 lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~ 111 (242)
T 3kae_A 37 MLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPG 111 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTT
T ss_pred hhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccc
Confidence 4566778889999999987654 35567777789999999999999999999983 1 344
Q ss_pred CHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCH
Q psy12642 67 DQE-TWQELCDLYLSEGDYAKAVFCMEELFLHHPHNH 102 (201)
Q Consensus 67 ~~~-~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~ 102 (201)
+.+ .+..+|.++...|+-++|+.++......+|--+
T Consensus 112 DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~ 148 (242)
T 3kae_A 112 DEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFS 148 (242)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccc
Confidence 544 455679999999999999999999988877543
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.41 E-value=0.23 Score=39.03 Aligned_cols=97 Identities=18% Similarity=0.138 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhh---cCCCCHH--
Q psy12642 35 AARKRKICILKAKNKIPEAIKELTEYLKKF--MTD----QETWQELCDLYLSEGDYAKAVFCMEELFL---HHPHNHL-- 103 (201)
Q Consensus 35 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~~~~~~-- 103 (201)
.....++.++...|++.+|...+....... ..+ .+++.....+|...+++.+|...++++.. ..+.++.
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk 217 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK 217 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence 455678999999999999999999876532 112 45777788999999999999999998742 2344443
Q ss_pred --HHHHHHHHHHHcCCcccHHHHHHHHHHHHcC
Q psy12642 104 --LHQRYADILYTQGGLENIELAISHYLMAINL 134 (201)
Q Consensus 104 --~~~~la~~~~~~~~~~~~~~A~~~~~~al~~ 134 (201)
.+...|.++...+ +|.+|..+|..++..
T Consensus 218 ~~~~~~~~~~~~~e~---~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 218 LEYYNLLVKISLHKR---EYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHC---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh---hHHHHHHHHHHHHhc
Confidence 5677788888889 999999999998864
No 247
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.32 E-value=0.25 Score=38.10 Aligned_cols=113 Identities=15% Similarity=0.040 Sum_probs=81.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcC--CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC---CCCHH----HH
Q psy12642 39 RKICILKAKNKIPEAIKELTEYLKKFM--TD----QETWQELCDLYLSEGDYAKAVFCMEELFLHH---PHNHL----LH 105 (201)
Q Consensus 39 ~~a~~~~~~~~~~~A~~~~~~~~~~~p--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~~~----~~ 105 (201)
.+|.+|+..|++.+|.+.+.+..+.-. ++ .+++..-...|...+++.++...+.++.... +.+|. ..
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 789999999999999999988877322 22 4556667788999999999999998887542 13333 44
Q ss_pred HHHHHHHH-HcCCcccHHHHHHHHHHHHcCC-----cccHHHHHHHHHHHHHhhh
Q psy12642 106 QRYADILY-TQGGLENIELAISHYLMAINLN-----EKNIRALYGLALSCHQVLT 154 (201)
Q Consensus 106 ~~la~~~~-~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~~~~~~ 154 (201)
..-|..+. ..+ +|..|...|-.+++.. |....+...++.|-...++
T Consensus 184 ~~~Gi~~l~~~r---dyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 184 LQSGILHAADER---DFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQ 235 (394)
T ss_dssp HHHHHHHHHTTS---CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhhHHHHHhcc---CHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCC
Confidence 55677777 788 9999999999987433 2223455566666666554
No 248
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.32 E-value=0.041 Score=43.06 Aligned_cols=99 Identities=12% Similarity=-0.046 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc--CCCCHH----H
Q psy12642 34 TAARKRKICILKAKNKIPEAIKELTEYLKKFMTD---QETWQELCDLYLSEGDYAKAVFCMEELFLH--HPHNHL----L 104 (201)
Q Consensus 34 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~----~ 104 (201)
..++..+|..|...|+++.|.+.+.++....... .+++.....++...+++..+...++++... ...++. .
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 3577889999999999999999999988754333 678888888999999999999999998654 223332 3
Q ss_pred HHHHHHHHHHcCCcccHHHHHHHHHHHHcCC
Q psy12642 105 HQRYADILYTQGGLENIELAISHYLMAINLN 135 (201)
Q Consensus 105 ~~~la~~~~~~~~~~~~~~A~~~~~~al~~~ 135 (201)
....|.++...+ +|.+|...|..++...
T Consensus 211 k~~~gl~~l~~r---~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 211 KTYYGIHCLAVR---NFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHGGGGTS---CHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhC---hHHHHHHHHHHHhccC
Confidence 455677777788 9999999999887644
No 249
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.26 E-value=0.28 Score=37.91 Aligned_cols=110 Identities=16% Similarity=0.021 Sum_probs=78.8
Q ss_pred HHhhhhccCHHHHHHHHHHHHhcCc------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---CCCHH----HHHH
Q psy12642 7 IIGCFHFFRYEEALEHLETIIKIDE------TNTAARKRKICILKAKNKIPEAIKELTEYLKKF---MTDQE----TWQE 73 (201)
Q Consensus 7 ~~~~~~~~~~~~A~~~~~~~l~~~~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---p~~~~----~~~~ 73 (201)
+.-|+..|+|.+|...+.++++.-. .-..++.....+|...+++.++...+.++.... +.+|. ....
T Consensus 106 ~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~ 185 (394)
T 3txn_A 106 IALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQ 185 (394)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHH
Confidence 4457889999999999999887421 223667777889999999999999998887643 23443 3444
Q ss_pred HHHHHH-hcCCHHHHHHHHHHHhhcCC--CCH---HHHHHHHHHHHHcC
Q psy12642 74 LCDLYL-SEGDYAKAVFCMEELFLHHP--HNH---LLHQRYADILYTQG 116 (201)
Q Consensus 74 l~~~~~-~~~~~~~A~~~~~~al~~~~--~~~---~~~~~la~~~~~~~ 116 (201)
-|..++ ..++|.+|...|-+++.... .++ .+...++.+....+
T Consensus 186 ~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~ 234 (394)
T 3txn_A 186 SGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLG 234 (394)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcC
Confidence 688899 89999999999998875432 222 23444555555555
No 250
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.16 E-value=0.042 Score=39.93 Aligned_cols=62 Identities=16% Similarity=0.153 Sum_probs=52.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHH
Q psy12642 43 ILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLL 104 (201)
Q Consensus 43 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 104 (201)
-.+..|+.++++..+...++..|.|...-..+.++++-.|+|++|..-++.+.+++|.....
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~ 67 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG 67 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence 34567888999999999999999998888888888899999999999999999999885443
No 251
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=96.15 E-value=0.19 Score=43.61 Aligned_cols=97 Identities=7% Similarity=-0.060 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH----hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC-CCCHHHHHHHH
Q psy12642 35 AARKRKICILKAKNKIPEAIKELTEYLK----KFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHH-PHNHLLHQRYA 109 (201)
Q Consensus 35 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la 109 (201)
..+..+...+++.|+.++|...+....+ ....|...|..+-..|.+.|++++|...|++..... ..|...+..+-
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 5677888899999999999999976543 234578889999999999999999999999987643 23477777777
Q ss_pred HHHHHcCCccc-HHHHHHHHHHHHcC
Q psy12642 110 DILYTQGGLEN-IELAISHYLMAINL 134 (201)
Q Consensus 110 ~~~~~~~~~~~-~~~A~~~~~~al~~ 134 (201)
.++.+.| + .++|.+.|++....
T Consensus 208 ~glcK~G---~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 208 QCMGRQD---QDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHT---CCHHHHHHHHHHHHHH
T ss_pred HHHHhCC---CcHHHHHHHHHHHHHc
Confidence 7888888 6 47788888887654
No 252
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.15 E-value=0.26 Score=41.17 Aligned_cols=76 Identities=14% Similarity=0.029 Sum_probs=51.1
Q ss_pred hccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------hcCCCHHHHHHHHHHHHhcCC
Q psy12642 12 HFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLK--------KFMTDQETWQELCDLYLSEGD 83 (201)
Q Consensus 12 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--------~~p~~~~~~~~l~~~~~~~~~ 83 (201)
..|++++|.+..+ ..+++..|..+|..+...++++.|+.+|.++-. ....+.+.+..++......|+
T Consensus 664 ~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~ 738 (814)
T 3mkq_A 664 KVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGK 738 (814)
T ss_dssp HHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCc
Confidence 4566666666542 345678999999999999999999999987522 224444555555555556666
Q ss_pred HHHHHHHHH
Q psy12642 84 YAKAVFCME 92 (201)
Q Consensus 84 ~~~A~~~~~ 92 (201)
+..|...|.
T Consensus 739 ~~~A~~~~~ 747 (814)
T 3mkq_A 739 FNLAFNAYW 747 (814)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 655555543
No 253
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.37 E-value=0.18 Score=39.43 Aligned_cols=96 Identities=8% Similarity=-0.135 Sum_probs=74.5
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC--CCH----HHHHHH
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKID---ETNTAARKRKICILKAKNKIPEAIKELTEYLKKFM--TDQ----ETWQEL 74 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p--~~~----~~~~~l 74 (201)
.-.+.-+++.|++++|.+.|.++.... ..-...+.....++...+++..+...+.++..... .++ ......
T Consensus 135 ~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~ 214 (429)
T 4b4t_R 135 INLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYY 214 (429)
T ss_dssp HHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHH
Confidence 345666889999999999999988754 23457788888999999999999999999876432 232 234445
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCC
Q psy12642 75 CDLYLSEGDYAKAVFCMEELFLHHP 99 (201)
Q Consensus 75 ~~~~~~~~~~~~A~~~~~~al~~~~ 99 (201)
|..+...++|.+|...|-.++....
T Consensus 215 gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 215 GIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhChHHHHHHHHHHHhccCC
Confidence 7788899999999999988876543
No 254
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.97 E-value=0.76 Score=37.74 Aligned_cols=124 Identities=13% Similarity=0.054 Sum_probs=79.4
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcCcccH-HH---HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKIDETNT-AA---RKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSE 81 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~---~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 81 (201)
+++.-....+.+.|...+.......+-+. .. +..++.-....+...++...+.+..... .+......++...++.
T Consensus 220 ~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~r~Alr~ 298 (618)
T 1qsa_A 220 VAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS-QSTSLIERRVRMALGT 298 (618)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC-CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC-CChHHHHHHHHHHHHC
Confidence 34444455688889888887754333222 22 2222222223343556677777655443 3333333344445677
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHc
Q psy12642 82 GDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAIN 133 (201)
Q Consensus 82 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~ 133 (201)
|+++.|..+|+..-...+......+-+|.++...| +.++|...|.++..
T Consensus 299 ~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g---~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 299 GDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERG---REAEAKEILHQLMQ 347 (618)
T ss_dssp TCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTT---CHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHccccccccHhHHHHHHHHHHHcC---CHHHHHHHHHHHhc
Confidence 99999999998766544456777888899989999 99999999999876
No 255
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.63 E-value=1.1 Score=39.58 Aligned_cols=115 Identities=12% Similarity=0.082 Sum_probs=70.9
Q ss_pred hhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------c---C
Q psy12642 9 GCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKK--------------------F---M 65 (201)
Q Consensus 9 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------------------~---p 65 (201)
.+...+.++-+.++ +...|.++...+.+|.++...|++++|..+|.++-.. . .
T Consensus 821 ~l~~~~~~~~~~~l----~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~ 896 (1139)
T 4fhn_B 821 KLFLFKQYNACMQL----IGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQN 896 (1139)
T ss_dssp HHHHHSCTTHHHHH----HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCC
T ss_pred HHHHhhhHHHHHHH----hhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccc
Confidence 35555666544432 2334556666677888888888888888888764210 0 0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-CCHH----HHHHHHHHHHHcCCcccHHHHHHHHHH
Q psy12642 66 TDQETWQELCDLYLSEGDYAKAVFCMEELFLHHP-HNHL----LHQRYADILYTQGGLENIELAISHYLM 130 (201)
Q Consensus 66 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~----~~~~la~~~~~~~~~~~~~~A~~~~~~ 130 (201)
.-+..|..+..++...|.++.+++..+.++...+ ++.. .|..+=..+...+ +|++|...+..
T Consensus 897 ~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~---~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 897 LLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG---KFDAAHVALMV 963 (1139)
T ss_dssp SSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHC---CSGGGGHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhC---CHHHHHHHHHh
Confidence 1123455566677777888888888887776543 3332 4555556666777 77777666643
No 256
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.61 E-value=1 Score=39.76 Aligned_cols=114 Identities=12% Similarity=0.011 Sum_probs=82.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC---------------------
Q psy12642 40 KICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHH--------------------- 98 (201)
Q Consensus 40 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------------------- 98 (201)
+...+...+.++-+.+ .....|.++..-+.+|.++...|++++|..+|+++-.--
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence 4445556677765543 445668888888999999999999999999998874211
Q ss_pred --CCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCc-ccH----HHHHHHHHHHHHhhhhhhhhh
Q psy12642 99 --PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNE-KNI----RALYGLALSCHQVLTSAKCSA 160 (201)
Q Consensus 99 --~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~----~~~~~l~~~~~~~~~~~~a~~ 160 (201)
..-+..+..+..++...+ .++.+++.-+.|++..+ ++. ..|..+-..+..+|++++|-.
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~---~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~ 959 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEES---AYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV 959 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTS---CCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred ccccHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence 111235566667777778 89999999999997553 222 256778888889999999944
No 257
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.36 E-value=0.94 Score=35.55 Aligned_cols=92 Identities=14% Similarity=0.076 Sum_probs=71.5
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcC------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hcCCCH----HHHH
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKID------ETNTAARKRKICILKAKNKIPEAIKELTEYLK---KFMTDQ----ETWQ 72 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~p~~~----~~~~ 72 (201)
++.-+...|++.+|...+..+...- ..-..++.....++...+++..|...+.++.. ..+..+ ..+.
T Consensus 143 La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~ 222 (445)
T 4b4t_P 143 LVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYN 222 (445)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHH
Confidence 3455788999999999999986532 12246777888999999999999999988643 234443 3556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhc
Q psy12642 73 ELCDLYLSEGDYAKAVFCMEELFLH 97 (201)
Q Consensus 73 ~l~~~~~~~~~~~~A~~~~~~al~~ 97 (201)
..|.++...++|.+|..+|..++..
T Consensus 223 ~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 223 LLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 6789999999999999999998864
No 258
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.32 E-value=0.37 Score=38.49 Aligned_cols=66 Identities=12% Similarity=0.091 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q psy12642 34 TAARKRKICILKAKNKIPEAIKELTEYLKKFMTD-------QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHN 101 (201)
Q Consensus 34 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 101 (201)
..++..+-..|...+.+++|..+..+.. +|.+ ...++.+|.++.-+++|.+|..++..++...|.+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 4677788889999999999999999874 5543 3456778999999999999999999999988754
No 259
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=92.66 E-value=1.6 Score=29.61 Aligned_cols=48 Identities=19% Similarity=0.282 Sum_probs=42.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12642 42 CILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEEL 94 (201)
Q Consensus 42 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 94 (201)
.+....|+++.|.++.+.. ++...|..+|...+..|+++-|..+|.++
T Consensus 13 ~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3466899999999987764 67889999999999999999999999875
No 260
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=90.87 E-value=2.4 Score=29.35 Aligned_cols=69 Identities=12% Similarity=-0.011 Sum_probs=46.1
Q ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q psy12642 31 ETNTAARKRKICILKAKNKIPEAIKELTEYLKK--FMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPH 100 (201)
Q Consensus 31 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 100 (201)
|....+|...+..+ ..+...++..+|.-.... .-..+..|...|..+...|++.+|..+|+.++.....
T Consensus 77 ~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~ 147 (202)
T 3esl_A 77 PRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCR 147 (202)
T ss_dssp HHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 44456666666644 234355677777666553 3445777777888888888888888888888876654
No 261
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=89.28 E-value=2.8 Score=27.35 Aligned_cols=120 Identities=11% Similarity=0.006 Sum_probs=79.9
Q ss_pred hhhhccCHHHHHHHHHHHHhcCcccH------------------HHHHHHHHHH--HHcCCHHHHHHHHHHHHHhcCCCH
Q psy12642 9 GCFHFFRYEEALEHLETIIKIDETNT------------------AARKRKICIL--KAKNKIPEAIKELTEYLKKFMTDQ 68 (201)
Q Consensus 9 ~~~~~~~~~~A~~~~~~~l~~~~~~~------------------~~~~~~a~~~--~~~~~~~~A~~~~~~~~~~~p~~~ 68 (201)
.+.-.|..++..+...+.....|-.. .++-.+|..+ ...|+....+.++-+ .+- +.
T Consensus 16 ~~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~---~n~-~s 91 (172)
T 1wy6_A 16 KFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVI---NNT-LN 91 (172)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHH---TTC-CC
T ss_pred HHHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHH---hcc-hH
Confidence 45557888888888888877654332 1122223322 134667777666654 222 22
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCC
Q psy12642 69 ETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLN 135 (201)
Q Consensus 69 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~ 135 (201)
+..-.--.....+|+-++--+.+...+...+-++..+..+|.+|.+.| +..+|-+.+.+|.+..
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg---~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVG---DERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhc---chhhHHHHHHHHHHhh
Confidence 222222245567888888888888877777778999999999999999 9999999999998765
No 262
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=89.03 E-value=8.5 Score=31.62 Aligned_cols=142 Identities=12% Similarity=-0.038 Sum_probs=85.3
Q ss_pred hhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHH
Q psy12642 9 GCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAV 88 (201)
Q Consensus 9 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~ 88 (201)
.+...+...++...+.......+++. ....++...+..|+++.|..++...-...+..+...+-+|.++...|+.++|.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~ 339 (618)
T 1qsa_A 261 RLMGNDVTDEQAKWRDDAIMRSQSTS-LIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAK 339 (618)
T ss_dssp TSCSTTCCHHHHHHHHHHHHTCCCHH-HHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCCChHHHHHHHhccccCCChH-HHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHH
Confidence 34445535566777777655444333 33344444556788988888887655433445667777888888889998888
Q ss_pred HHHHHHhhcCCCCHH------------------------------HHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCccc
Q psy12642 89 FCMEELFLHHPHNHL------------------------------LHQRYADILYTQGGLENIELAISHYLMAINLNEKN 138 (201)
Q Consensus 89 ~~~~~al~~~~~~~~------------------------------~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 138 (201)
..|+++... .+.. .-+..+..++..| ....|...+...+...+
T Consensus 340 ~~~~~~a~~--~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g---~~~~a~~ew~~~~~~~~-- 412 (618)
T 1qsa_A 340 EILHQLMQQ--RGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWN---LDNTARSEWANLVKSKS-- 412 (618)
T ss_dssp HHHHHHHTS--CSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTT---CHHHHHHHHHHHHTTCC--
T ss_pred HHHHHHhcC--CChHHHHHHHHcCCCCCCCCCCCChhHHhhhccChHHHHHHHHHHCC---ChhhHHHHHHHHHhcCC--
Confidence 888877642 1110 1234455566667 77777777776665422
Q ss_pred HHHHHHHHHHHHHhhhhhhh
Q psy12642 139 IRALYGLALSCHQVLTSAKC 158 (201)
Q Consensus 139 ~~~~~~l~~~~~~~~~~~~a 158 (201)
+.-...++......|....+
T Consensus 413 ~~~~~~la~~a~~~~~~~~~ 432 (618)
T 1qsa_A 413 KTEQAQLARYAFNNQWWDLS 432 (618)
T ss_dssp HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHCCChHHH
Confidence 22234455555555555444
No 263
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=87.65 E-value=2.6 Score=23.98 Aligned_cols=32 Identities=25% Similarity=0.297 Sum_probs=20.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHH
Q psy12642 74 LCDLYLSEGDYAKAVFCMEELFLHHPHNHLLH 105 (201)
Q Consensus 74 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 105 (201)
+|..+...|++++|+.+|-+|+...|.-...+
T Consensus 23 ~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL 54 (73)
T 3ax2_A 23 LGEELLAQGDYEKGVDHLTNAIAVCGQPQQLL 54 (73)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 56666667777777777777777666654443
No 264
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=86.71 E-value=15 Score=31.86 Aligned_cols=89 Identities=16% Similarity=0.097 Sum_probs=61.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-CCC------------------
Q psy12642 40 KICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLH-HPH------------------ 100 (201)
Q Consensus 40 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~------------------ 100 (201)
+...+...|.++-+. ..+..-|.++..-+.+|.+|...|++++|..+|+++-.- .+.
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 444556677776543 455677888888888999999999999999999877521 111
Q ss_pred ----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCC
Q psy12642 101 ----NHLLHQRYADILYTQGGLENIELAISHYLMAINLN 135 (201)
Q Consensus 101 ----~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~ 135 (201)
...++.....++...+ -++-++...+.|++.-
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~---a~~~vi~fA~lAI~~~ 927 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEES---AYIDALEFSLLADASK 927 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTC
T ss_pred ccchhHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhc
Confidence 0124555666666667 7888888888888643
No 265
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=84.80 E-value=6.7 Score=26.08 Aligned_cols=58 Identities=7% Similarity=-0.131 Sum_probs=30.3
Q ss_pred HHHHhhhhccCHHHHHHHHHHHHhcCccc---HHHHHHH------HHHHHHcCCHHHHHHHHHHHHH
Q psy12642 5 VYIIGCFHFFRYEEALEHLETIIKIDETN---TAARKRK------ICILKAKNKIPEAIKELTEYLK 62 (201)
Q Consensus 5 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~~------a~~~~~~~~~~~A~~~~~~~~~ 62 (201)
...+.+|..|+|-+|-+.++.+....+.. ...+..+ |......|+...|...+.+++.
T Consensus 37 ~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 37 VHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34455666677777766666666654332 1122222 1223345666666666666554
No 266
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=82.64 E-value=5.2 Score=26.32 Aligned_cols=31 Identities=23% Similarity=0.165 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCC
Q psy12642 102 HLLHQRYADILYTQGGLENIELAISHYLMAINLN 135 (201)
Q Consensus 102 ~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~ 135 (201)
+..+...|..+...| ++.+|.+.|+.+++..
T Consensus 101 AlfYe~wA~~lE~~g---~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 101 SPLYIAWAGHLEAQG---ELQHASAVLQRGIQNQ 131 (152)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcC
Confidence 344444444444455 5555555555555443
No 267
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=82.24 E-value=24 Score=30.63 Aligned_cols=148 Identities=7% Similarity=-0.015 Sum_probs=78.9
Q ss_pred HHHHhhhhccCHHHHHHHHHHHHhcC-ccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC---C---CH----H
Q psy12642 5 VYIIGCFHFFRYEEALEHLETIIKID-ETN----TAARKRKICILKAKNKIPEAIKELTEYLKKFM---T---DQ----E 69 (201)
Q Consensus 5 ~~~~~~~~~~~~~~A~~~~~~~l~~~-~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p---~---~~----~ 69 (201)
++.+++...|+.++++..+.+-+-.. .++ ..+.+.+|.++...+ .+++..+...+.... . +. .
T Consensus 379 ~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~g 456 (963)
T 4ady_A 379 TASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHG 456 (963)
T ss_dssp HHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHH
T ss_pred HHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHH
Confidence 45566777788888888777766421 122 244555565555444 467777777665432 0 11 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCH--HHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHH
Q psy12642 70 TWQELCDLYLSEGDYAKAVFCMEELFLHHPHNH--LLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLAL 147 (201)
Q Consensus 70 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 147 (201)
+...+|.++...++ +++...+...+..+.... .+-+.+|.++.-.+ +-+-....+..+.+...+.......++.
T Consensus 457 AaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTg---n~~ai~~LL~~~~e~~~e~vrR~aalgL 532 (963)
T 4ady_A 457 ASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTG---KPEAIHDMFTYSQETQHGNITRGLAVGL 532 (963)
T ss_dssp HHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCC---CHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccC---CHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 44456666666655 456666666665333211 23445666666666 5444444444444443343333344444
Q ss_pred HHHHhhhhhhh
Q psy12642 148 SCHQVLTSAKC 158 (201)
Q Consensus 148 ~~~~~~~~~~a 158 (201)
.....|+.+.+
T Consensus 533 Gll~~g~~e~~ 543 (963)
T 4ady_A 533 ALINYGRQELA 543 (963)
T ss_dssp HHHTTTCGGGG
T ss_pred HhhhCCChHHH
Confidence 44455665555
No 268
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=81.71 E-value=4.7 Score=27.87 Aligned_cols=92 Identities=9% Similarity=-0.040 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHH
Q psy12642 34 TAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETW-----QELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRY 108 (201)
Q Consensus 34 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~-----~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 108 (201)
....+.+|.+++..+++.+|.+.+..+++..|.+.... ..+--+-+-+|+.+. ...+++ .+. ..+..+
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~-~~ll~~----~~~--~~y~~L 86 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPT-VELLKK----YHL--MQFAEV 86 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEEC-HHHHHH----TTC--GGGHHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCC-HHHhhh----Cch--hHHHHH
Confidence 35677789999999999999999999999877664322 223334456677543 333332 121 134555
Q ss_pred HHHHHHcCCcccHHHHHHHHHHHHc
Q psy12642 109 ADILYTQGGLENIELAISHYLMAIN 133 (201)
Q Consensus 109 a~~~~~~~~~~~~~~A~~~~~~al~ 133 (201)
..+ .+.|+...++++++-++..+.
T Consensus 87 ~~A-vr~Gdl~~f~~~l~~~~~~f~ 110 (203)
T 3t5x_A 87 TRA-VSEGNLLLLHEALAKHEAFFI 110 (203)
T ss_dssp HHH-HHHTCHHHHHHHHHHTHHHHH
T ss_pred HHH-HHhCCHHHHHHHHHHhHHHHH
Confidence 554 556644455666655554433
No 269
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=80.59 E-value=28 Score=30.22 Aligned_cols=95 Identities=14% Similarity=0.094 Sum_probs=68.9
Q ss_pred HHHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------c
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKK---------------------F 64 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---------------------~ 64 (201)
.+..+...|.++-|. ..+.--|.++..-+.+|.++...|++++|..+|+++-.- .
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 445566677776544 355667788888899999999999999999999875321 0
Q ss_pred CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-CCCCHHH
Q psy12642 65 MTD--QETWQELCDLYLSEGDYAKAVFCMEELFLH-HPHNHLL 104 (201)
Q Consensus 65 p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~ 104 (201)
++. ...|.....++...+-++-++...+.||.. .++++..
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l 934 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDL 934 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHH
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccc
Confidence 111 225566778888999999999999999964 4555553
No 270
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=79.90 E-value=11 Score=25.13 Aligned_cols=31 Identities=13% Similarity=0.183 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q psy12642 68 QETWQELCDLYLSEGDYAKAVFCMEELFLHH 98 (201)
Q Consensus 68 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 98 (201)
+..|...|..+...|++.+|..+|+.++...
T Consensus 96 AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 96 AQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4444444555555555555555555555443
No 271
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=79.60 E-value=7.7 Score=30.55 Aligned_cols=89 Identities=13% Similarity=0.001 Sum_probs=61.7
Q ss_pred ccCHHHHHHHHHHHHhcCccc------------H----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC--------CC-
Q psy12642 13 FFRYEEALEHLETIIKIDETN------------T----AARKRKICILKAKNKIPEAIKELTEYLKKFM--------TD- 67 (201)
Q Consensus 13 ~~~~~~A~~~~~~~l~~~~~~------------~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p--------~~- 67 (201)
....+++...+.++....-++ - .....+-.+|++.|+...+...++..-...+ ..
T Consensus 139 ~~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q 218 (455)
T 3t5v_B 139 HQFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQ 218 (455)
T ss_dssp THHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHH
T ss_pred hhHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccc
Confidence 345667777777777652111 1 1122344688999999988888865543322 11
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-CCCC
Q psy12642 68 -QETWQELCDLYLSEGDYAKAVFCMEELFLH-HPHN 101 (201)
Q Consensus 68 -~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~ 101 (201)
....+.+|.+++.+++|.+|...+..|+.. .|.+
T Consensus 219 ~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 219 QIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred eEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 356778999999999999999999999998 7754
No 272
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=79.10 E-value=4.7 Score=28.39 Aligned_cols=35 Identities=14% Similarity=0.116 Sum_probs=20.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q psy12642 66 TDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPH 100 (201)
Q Consensus 66 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 100 (201)
..+.+|...|..+...|++.+|..+|+.++.....
T Consensus 148 ~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 148 ESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 33555555566666666666666666666655433
No 273
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=78.95 E-value=8.1 Score=26.69 Aligned_cols=31 Identities=13% Similarity=0.022 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q psy12642 70 TWQELCDLYLSEGDYAKAVFCMEELFLHHPH 100 (201)
Q Consensus 70 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 100 (201)
..+.+|.+++.+++|.+|...+..|+...|.
T Consensus 16 Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~ 46 (203)
T 3t5x_A 16 YKYYVGRKAMFDSDFKQAEEYLSFAFEHCHR 46 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHCCH
Confidence 3344555555555555555555555555443
No 274
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=77.33 E-value=5.9 Score=31.20 Aligned_cols=81 Identities=7% Similarity=-0.034 Sum_probs=57.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcC--------CC--CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcC-Cccc---
Q psy12642 73 ELCDLYLSEGDYAKAVFCMEELFLHH--------PH--NHLLHQRYADILYTQGGLENIELAISHYLMAINL-NEKN--- 138 (201)
Q Consensus 73 ~l~~~~~~~~~~~~A~~~~~~al~~~--------~~--~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~-~p~~--- 138 (201)
.+-.+|++.|+..-+...++..-... |. -....+.+|.++...+ +|.+|.+++..|+.. .|..
T Consensus 181 ~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~---~y~~A~~~L~~A~~~lcp~~~~~ 257 (455)
T 3t5v_B 181 KLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNS---QVHNAFVQFNEAFQSLLNLPLTN 257 (455)
T ss_dssp HHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHc---cHHHHHHHHHHHHHhcCCccccc
Confidence 35578999999988887775443222 21 1347889999999999 999999999999998 7754
Q ss_pred -------HHHHHHHHHHHHHhhhhh
Q psy12642 139 -------IRALYGLALSCHQVLTSA 156 (201)
Q Consensus 139 -------~~~~~~l~~~~~~~~~~~ 156 (201)
...+..+.-+-.-+|+..
T Consensus 258 ~~~~~n~~~ILkyLIpv~LLlG~~P 282 (455)
T 3t5v_B 258 QAITRNGTRILNYMIPTGLILGKMV 282 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCB
T ss_pred hhhhhHHHHHHHHHHHHHHHcCCCC
Confidence 123444555555667553
No 275
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=77.23 E-value=4.4 Score=24.31 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=20.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q psy12642 74 LCDLYLSEGDYAKAVFCMEELFLHHPHN 101 (201)
Q Consensus 74 l~~~~~~~~~~~~A~~~~~~al~~~~~~ 101 (201)
+|..+...|+++.|+.+|-+|+...|.-
T Consensus 26 lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 26 LGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 6777777777777777777777776663
No 276
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=74.52 E-value=9.5 Score=21.61 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=28.1
Q ss_pred HHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccH
Q psy12642 105 HQRYADILYTQGGLENIELAISHYLMAINLNEKNI 139 (201)
Q Consensus 105 ~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 139 (201)
-..+|+.+...| ++++|+.+|-+|+...|.-.
T Consensus 20 eV~~GE~L~~~g---~~~~~~~hf~nAl~Vc~qP~ 51 (73)
T 3ax2_A 20 EIQLGEELLAQG---DYEKGVDHLTNAIAVCGQPQ 51 (73)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHHHcCCHH
Confidence 356899999999 99999999999999998843
No 277
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=72.95 E-value=15 Score=23.30 Aligned_cols=74 Identities=11% Similarity=-0.015 Sum_probs=45.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc--cHHHHHHHHHH
Q psy12642 74 LCDLYLSEGDYAKAVFCMEEL---FLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK--NIRALYGLALS 148 (201)
Q Consensus 74 l~~~~~~~~~~~~A~~~~~~a---l~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~ 148 (201)
.+.+|+..++.++.+..++.+ +...|... .-.+....... +..+|.+++++..+.... .-.+|...-.+
T Consensus 46 ASrlyf~~~n~~~m~~~L~pLh~~l~~~PeT~---~E~sF~~~fG~---~L~~A~~~~~~y~~t~d~~~lnqAWd~Y~~V 119 (126)
T 2npu_A 46 ASRLYFGERNVKGMFEVLEPLHAMMERGPQTL---KETSFNQAYGR---DLMEAQEWCRKYMKSGNVKDLTQAWDLYYHV 119 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH---HHHHHHHHHHH---HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHhcccCHHHHHHHHHHHHHHHccCCCCH---HHHHHHHHHhH---HHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Confidence 456777888999888888776 34455533 22333323334 788888888887644332 23567667666
Q ss_pred HHHhh
Q psy12642 149 CHQVL 153 (201)
Q Consensus 149 ~~~~~ 153 (201)
+.+..
T Consensus 120 f~rI~ 124 (126)
T 2npu_A 120 FRRIS 124 (126)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66543
No 278
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=72.83 E-value=8.8 Score=22.83 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=14.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q psy12642 71 WQELCDLYLSEGDYAKAVFCMEEL 94 (201)
Q Consensus 71 ~~~l~~~~~~~~~~~~A~~~~~~a 94 (201)
+...+..+.+.|+|++|+++.+++
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHH
Confidence 334566666677777776665554
No 279
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=71.32 E-value=14 Score=22.04 Aligned_cols=57 Identities=14% Similarity=0.054 Sum_probs=32.0
Q ss_pred HHHHHhhhhccCHHHHHHHHHHHHhcCcccH-HHHH---HH--HHHHHHcCCHHHHHHHHHHHHH
Q psy12642 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNT-AARK---RK--ICILKAKNKIPEAIKELTEYLK 62 (201)
Q Consensus 4 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~---~~--a~~~~~~~~~~~A~~~~~~~~~ 62 (201)
+..++.++..|+|-+|-+.++......|... ..+. .+ |......|+. |...+.+++.
T Consensus 5 ~~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 4556667777777777777777777664321 1111 11 2223345555 6666666554
No 280
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=70.02 E-value=31 Score=25.61 Aligned_cols=64 Identities=9% Similarity=-0.183 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHh----------------h---cCCCCHHHHHHHHH-HHHHcCCcccHHHHH
Q psy12642 66 TDQETWQELCDLYLSEGDYAKAVFCMEELF----------------L---HHPHNHLLHQRYAD-ILYTQGGLENIELAI 125 (201)
Q Consensus 66 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al----------------~---~~~~~~~~~~~la~-~~~~~~~~~~~~~A~ 125 (201)
.++..+..+|..|...|++.+|..+|-..- . -.|.....+...+. .+...+ +...|.
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~---n~~~A~ 208 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFIS---NISFAH 208 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTT---BHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhc---CHHHHH
Confidence 467888889999999999999888774211 1 11222333333333 334567 777777
Q ss_pred HHHHHHH
Q psy12642 126 SHYLMAI 132 (201)
Q Consensus 126 ~~~~~al 132 (201)
..+....
T Consensus 209 ~~~~~f~ 215 (312)
T 2wpv_A 209 ESKDIFL 215 (312)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766544
No 281
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=69.06 E-value=22 Score=23.56 Aligned_cols=59 Identities=8% Similarity=0.018 Sum_probs=40.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCC--H----HHH---HHHHHHHHHcCCcccHHHHHHHHHHHHc
Q psy12642 72 QELCDLYLSEGDYAKAVFCMEELFLHHPHN--H----LLH---QRYADILYTQGGLENIELAISHYLMAIN 133 (201)
Q Consensus 72 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~----~~~---~~la~~~~~~~~~~~~~~A~~~~~~al~ 133 (201)
+.-|..++..|+|=+|-++++.+-...+.. . ..+ ...|..+...| +...|...+.+++.
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rg---N~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFE---DDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHH
Confidence 345666777788888888888887766544 1 122 23344556678 89999999998875
No 282
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=67.30 E-value=23 Score=23.13 Aligned_cols=41 Identities=12% Similarity=-0.010 Sum_probs=19.3
Q ss_pred cHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642 120 NIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSA 160 (201)
Q Consensus 120 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 160 (201)
..+.--+.+...+.-.|-++..+..++.+|.+.|+..++..
T Consensus 106 KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~e 146 (172)
T 1wy6_A 106 KRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATT 146 (172)
T ss_dssp CHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHH
Confidence 33333344444333344445555556666666665555533
No 283
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=65.20 E-value=16 Score=30.19 Aligned_cols=52 Identities=15% Similarity=-0.038 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhh
Q psy12642 104 LHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKC 158 (201)
Q Consensus 104 ~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a 158 (201)
.....|...+..| +|.-|.+....++..+|++..+...++.++.++|...+.
T Consensus 451 ~~~~~a~~~~~~g---~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~~~ 502 (658)
T 2cfu_A 451 RLLEQARASYARG---EYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAEN 502 (658)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhccC
Confidence 4556677778889 999999999999999999999999999999999977665
No 284
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=63.58 E-value=13 Score=22.19 Aligned_cols=29 Identities=24% Similarity=0.351 Sum_probs=26.6
Q ss_pred HHHHHHHHHcCCcccHHHHHHHHHHHHcCCcc
Q psy12642 106 QRYADILYTQGGLENIELAISHYLMAINLNEK 137 (201)
Q Consensus 106 ~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 137 (201)
..+|+.+...| +++.|+.+|-+|+...|.
T Consensus 24 V~lGE~L~~~g---~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 24 IQLGEELLAQG---DYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHT---CHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHHHcCC
Confidence 56899999999 999999999999999987
No 285
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=62.39 E-value=18 Score=25.29 Aligned_cols=35 Identities=23% Similarity=0.214 Sum_probs=18.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q psy12642 43 ILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDL 77 (201)
Q Consensus 43 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 77 (201)
+.++.|.+++|.+.+++....+|.+......|..+
T Consensus 123 VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~I 157 (235)
T 3bu8_A 123 ICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNI 157 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHH
T ss_pred HHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 34555666666666666555544444444444433
No 286
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=62.33 E-value=8.5 Score=22.12 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=15.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhh
Q psy12642 73 ELCDLYLSEGDYAKAVFCMEELFL 96 (201)
Q Consensus 73 ~l~~~~~~~~~~~~A~~~~~~al~ 96 (201)
.+|+=|...|+|+.|+.+|+.+++
T Consensus 17 k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 17 KLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcChHHHHHHHHHHHH
Confidence 355666667777777777766653
No 287
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=61.60 E-value=83 Score=27.48 Aligned_cols=77 Identities=13% Similarity=-0.034 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhcCcccH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12642 17 EEALEHLETIIKIDETNT--AARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEE 93 (201)
Q Consensus 17 ~~A~~~~~~~l~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 93 (201)
+++.+.+..++..+.... .+-+.+|.++...|+.+....++..+.....++..-...+|......|+.+.+-...+.
T Consensus 471 eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~ 549 (963)
T 4ady_A 471 IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITK 549 (963)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHH
Confidence 356666666665443211 34445666666667665555555554443222111112233333344555444444333
No 288
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.90 E-value=56 Score=24.99 Aligned_cols=87 Identities=10% Similarity=0.049 Sum_probs=61.2
Q ss_pred hhhccCHHHHHHHHHHHHhcC-----------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---c--CC-
Q psy12642 10 CFHFFRYEEALEHLETIIKID-----------------ETNTAARKRKICILKAKNKIPEAIKELTEYLKK---F--MT- 66 (201)
Q Consensus 10 ~~~~~~~~~A~~~~~~~l~~~-----------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~--p~- 66 (201)
.....+.++|+++++++...- .....+...++..|...|+.+.|...++++-.. . ++
T Consensus 86 ~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~ 165 (393)
T 4b4t_O 86 LKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPL 165 (393)
T ss_dssp HHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSS
T ss_pred HhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccH
Confidence 345678999999998874432 112356667888999999999999999887642 1 11
Q ss_pred --CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q psy12642 67 --DQETWQELCDLYLSEGDYAKAVFCMEELFL 96 (201)
Q Consensus 67 --~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 96 (201)
....+...+..|...+++..+....-..+.
T Consensus 166 ~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 166 RITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 133455567778889999888777666664
No 289
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=59.02 E-value=23 Score=21.09 Aligned_cols=28 Identities=25% Similarity=0.135 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy12642 34 TAARKRKICILKAKNKIPEAIKELTEYL 61 (201)
Q Consensus 34 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 61 (201)
+-.+-+++..+...|+|++|+++.+++.
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 3455677888889999999988776654
No 290
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=58.96 E-value=39 Score=26.37 Aligned_cols=46 Identities=22% Similarity=0.207 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhcCCC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q psy12642 51 PEAIKELTEYLKKFMTD--------QETWQELCDLYLSEGDYAKAVFCMEELFL 96 (201)
Q Consensus 51 ~~A~~~~~~~~~~~p~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 96 (201)
+..+..++.++..-|.. ..++..++.+|+.+|+|++|+...++++.
T Consensus 165 ~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 165 DFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 34455556666654532 45778899999999999999999998885
No 291
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=57.59 E-value=46 Score=23.32 Aligned_cols=67 Identities=13% Similarity=0.224 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHhcCCCHHH--------HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcC
Q psy12642 50 IPEAIKELTEYLKKFMTDQET--------WQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQG 116 (201)
Q Consensus 50 ~~~A~~~~~~~~~~~p~~~~~--------~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 116 (201)
.+.|+..++..-+-.+-+... -.....++.+.|.|++|.+.+++.+..+|.+......+..+-...+
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd 162 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKN 162 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccC
Confidence 477888888877666543222 1223456789999999999999999988887777777777755554
No 292
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=57.44 E-value=28 Score=28.82 Aligned_cols=46 Identities=24% Similarity=0.295 Sum_probs=41.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcC
Q psy12642 71 WQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQG 116 (201)
Q Consensus 71 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 116 (201)
....|...+..|+|.-|.+..+.++..+|+|..+...++.++..+|
T Consensus 452 ~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 452 LLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 4456777889999999999999999999999999999999988887
No 293
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=56.83 E-value=14 Score=21.36 Aligned_cols=32 Identities=22% Similarity=0.199 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy12642 16 YEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLK 62 (201)
Q Consensus 16 ~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 62 (201)
.++|+.+..++++.| ..|++++|+..|..+++
T Consensus 16 ~~~Ai~lv~~Ave~D---------------~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 16 EEMARKYAINAVKAD---------------KEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHHHHHH---------------HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---------------HhccHHHHHHHHHHHHH
Confidence 456777777765543 44555555555555444
No 294
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=55.97 E-value=43 Score=26.21 Aligned_cols=46 Identities=24% Similarity=0.336 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhcCCC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q psy12642 51 PEAIKELTEYLKKFMTD--------QETWQELCDLYLSEGDYAKAVFCMEELFL 96 (201)
Q Consensus 51 ~~A~~~~~~~~~~~p~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 96 (201)
+..+..++.++..-|.. ..++..+|.+|+.+|+|++|....++++.
T Consensus 171 ~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 171 TEIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 34445556666654432 45788899999999999999999998885
No 295
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=54.38 E-value=17 Score=21.05 Aligned_cols=15 Identities=20% Similarity=0.034 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHhcC
Q psy12642 16 YEEALEHLETIIKID 30 (201)
Q Consensus 16 ~~~A~~~~~~~l~~~ 30 (201)
.++|+.+..++++.+
T Consensus 8 ~~~Ai~lv~~Ave~D 22 (83)
T 2v6y_A 8 EDMARKYAILAVKAD 22 (83)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 457777777776543
No 296
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=54.29 E-value=51 Score=26.09 Aligned_cols=30 Identities=17% Similarity=0.143 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q psy12642 68 QETWQELCDLYLSEGDYAKAVFCMEELFLH 97 (201)
Q Consensus 68 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 97 (201)
..++..++.+|+.+|+|++|....++++..
T Consensus 203 ~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 203 EVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 457788999999999999999999999854
No 297
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=51.02 E-value=48 Score=25.99 Aligned_cols=46 Identities=17% Similarity=0.338 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhcCCC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q psy12642 52 EAIKELTEYLKKFMTD--------QETWQELCDLYLSEGDYAKAVFCMEELFLH 97 (201)
Q Consensus 52 ~A~~~~~~~~~~~p~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 97 (201)
..+..++.++..-|.. ..++..++.+|+..|+|++|+...++++..
T Consensus 178 ~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 178 QVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 3444455555544432 457788999999999999999999999863
No 298
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=50.66 E-value=35 Score=20.11 Aligned_cols=10 Identities=20% Similarity=0.215 Sum_probs=4.2
Q ss_pred HHHHHHHHHh
Q psy12642 86 KAVFCMEELF 95 (201)
Q Consensus 86 ~A~~~~~~al 95 (201)
+|+..+.+|+
T Consensus 14 ~Ai~lv~~Av 23 (93)
T 1wfd_A 14 AAVAVLKRAV 23 (93)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 299
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=50.52 E-value=83 Score=24.15 Aligned_cols=100 Identities=10% Similarity=0.023 Sum_probs=53.9
Q ss_pred HHHHHHHHHHh-----cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc------CCCCHHHHHHHHHHHHHcCCcccH
Q psy12642 53 AIKELTEYLKK-----FMTDQETWQELCDLYLSEGDYAKAVFCMEELFLH------HPHNHLLHQRYADILYTQGGLENI 121 (201)
Q Consensus 53 A~~~~~~~~~~-----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~~~~~~~ 121 (201)
++..|.+++.. .....-.+..+|-.+++.+++.+|+..+-.+-.. ..+|.+.+-.+-.+.... .
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eIAnel-----i 350 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNYSKDDEEMYKEFHEIANDL-----I 350 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHTH-----H
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHH-----h
Confidence 55666666542 1222344566777888999999999988776532 234444444433332111 0
Q ss_pred HHHHHHHHHHHcC-C---------cccHHHHHHHHHHHHHhhhhhhhhh
Q psy12642 122 ELAISHYLMAINL-N---------EKNIRALYGLALSCHQVLTSAKCSA 160 (201)
Q Consensus 122 ~~A~~~~~~al~~-~---------p~~~~~~~~l~~~~~~~~~~~~a~~ 160 (201)
. ..++.+... + -.+++.+..|-..|-..=.+++.+.
T Consensus 351 P---~~~k~a~~~~~~~G~~~~siL~DpecfA~LLrFYDgIC~WEEGS~ 396 (472)
T 3re2_A 351 P---NILKDAVAKADPSGTGSTNLTSDPKFFALVLQFYDGICLWEEGSP 396 (472)
T ss_dssp H---HHHHHHHTCC--------CGGGCHHHHHHHHHHHHHHHHHHTTCS
T ss_pred h---HHHHhhhhccCCCCcchhhhccChHHHHHHHHHhhcceecccCCC
Confidence 1 111212221 1 1356677777777777666666643
No 300
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.45 E-value=28 Score=21.63 Aligned_cols=16 Identities=19% Similarity=0.256 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHhhcCC
Q psy12642 84 YAKAVFCMEELFLHHP 99 (201)
Q Consensus 84 ~~~A~~~~~~al~~~~ 99 (201)
+++|..+..++|..+.
T Consensus 19 h~~AF~~Is~AL~~DE 34 (116)
T 2dl1_A 19 YKKAFLFVNKGLNTDE 34 (116)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhh
Confidence 4555555555555443
No 301
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=48.93 E-value=23 Score=20.66 Aligned_cols=32 Identities=16% Similarity=0.281 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy12642 16 YEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLK 62 (201)
Q Consensus 16 ~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 62 (201)
...|+.+..++++. -..|++++|+..|..+++
T Consensus 13 ~~~A~~lv~~Ave~---------------D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 13 STAAATVLKRAVEL---------------DSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHHHHHH---------------HHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------------HHcCCHHHHHHHHHHHHH
Confidence 34566666666543 234555555555555443
No 302
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=47.61 E-value=91 Score=23.95 Aligned_cols=95 Identities=14% Similarity=0.061 Sum_probs=56.4
Q ss_pred HHHHHHHHHcCC---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-----CCCCHHHHHHHH
Q psy12642 38 KRKICILKAKNK---IPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLH-----HPHNHLLHQRYA 109 (201)
Q Consensus 38 ~~~a~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~la 109 (201)
..+-.++...|. |.-|+.-+-.+-+..|... ...++..|.+++.. .......+..+|
T Consensus 239 q~LLWLLyD~GhL~rYPmALgnLgDLEe~~pt~g---------------r~~~l~L~~~AI~sa~~yY~n~HvYPYtylg 303 (472)
T 3re2_A 239 QELLWLLYDMGHIKTYPMAIANLGDLEEISPTPG---------------RPPAEELFKEAITVAKREYSDHHIYPYTYLG 303 (472)
T ss_dssp HHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTT---------------SCCHHHHHHHHHHHHHHHSTTCCSHHHHHHH
T ss_pred HHHHHHHHhccchhhCchhhcchhhHHhcCCCCC---------------CCCHHHHHHHHHHHHHHHhccCCccchhhhh
Confidence 444555555553 4555555555544544321 11244555555532 334566788899
Q ss_pred HHHHHcCCcccHHHHHHHHHHHHcC------CcccHHHHHHHHHHHH
Q psy12642 110 DILYTQGGLENIELAISHYLMAINL------NEKNIRALYGLALSCH 150 (201)
Q Consensus 110 ~~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~ 150 (201)
..+++.+ ++.+|++.+-.+-.. ..++.+.+..+-.+..
T Consensus 304 Gy~yR~~---~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eIAn 347 (472)
T 3re2_A 304 GYYYRKK---KYYEAIASWVDAGYVAGKYNYSKDDEEMYKEFHEIAN 347 (472)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHH
T ss_pred hhhhhcc---hHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHH
Confidence 9999999 999999999886532 2345566655555443
No 303
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=47.19 E-value=18 Score=24.95 Aligned_cols=37 Identities=11% Similarity=0.048 Sum_probs=18.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q psy12642 41 ICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDL 77 (201)
Q Consensus 41 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 77 (201)
..+.++.|.+++|.+.+++....++++...-..|..+
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~I 160 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMI 160 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHH
T ss_pred HHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3355666777777777766665555444444444333
No 304
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=47.17 E-value=89 Score=23.49 Aligned_cols=26 Identities=12% Similarity=0.056 Sum_probs=16.6
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHH
Q psy12642 32 TNTAARKRKICILKAKNKIPEAIKEL 57 (201)
Q Consensus 32 ~~~~~~~~~a~~~~~~~~~~~A~~~~ 57 (201)
-++..+..+|..++..+++.+|..++
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 34566666677777666666665554
No 305
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=44.99 E-value=15 Score=25.31 Aligned_cols=42 Identities=12% Similarity=0.237 Sum_probs=27.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcC
Q psy12642 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQG 116 (201)
Q Consensus 75 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 116 (201)
..++.+.|.+++|.+.+++....++.+......|..+-...+
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd 165 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKD 165 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTC
T ss_pred HHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccC
Confidence 457889999999999999998888777666666666544333
No 306
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=44.99 E-value=59 Score=25.35 Aligned_cols=32 Identities=19% Similarity=0.104 Sum_probs=27.8
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy12642 32 TNTAARKRKICILKAKNKIPEAIKELTEYLKK 63 (201)
Q Consensus 32 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 63 (201)
+-..++..++.+|+..+++++|+...++++..
T Consensus 188 tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 188 NKYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 34578888999999999999999999999864
No 307
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=44.85 E-value=93 Score=23.06 Aligned_cols=117 Identities=13% Similarity=-0.009 Sum_probs=64.3
Q ss_pred hhhccCHHHHHHHHHHHHhcC------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHH
Q psy12642 10 CFHFFRYEEALEHLETIIKID------ETNTAARKRKICILKAKNKIPEAIKELTEYLKK-----FMTDQETWQELCDLY 78 (201)
Q Consensus 10 ~~~~~~~~~A~~~~~~~l~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~l~~~~ 78 (201)
-...|+|=+|.+.|+.+.... ......++.-+..+.+.|++..|.+...-.++. .|-+......+..++
T Consensus 23 ~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 23 KIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 445566666666666555431 112234444455566666666655543333321 233344444455554
Q ss_pred HhcCCHH-HHHHHHHHHhh-------cCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHH
Q psy12642 79 LSEGDYA-KAVFCMEELFL-------HHPHNHLLHQRYADILYTQGGLENIELAISHYL 129 (201)
Q Consensus 79 ~~~~~~~-~A~~~~~~al~-------~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~ 129 (201)
.....-+ .=..+.+++++ ..-.++..+..+|..+...+ ++.+|..+|-
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~---~~~~A~~H~i 158 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGD---FVYEAERYFM 158 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcC---CHHHHHHHHH
Confidence 4322111 11233333432 22368999999999999999 9999999886
No 308
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=43.41 E-value=1.4e+02 Score=24.78 Aligned_cols=88 Identities=9% Similarity=-0.031 Sum_probs=0.0
Q ss_pred HHhhhhccCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhcCCC--------
Q psy12642 7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKN-----------KIPEAIKELTEYLKKFMTD-------- 67 (201)
Q Consensus 7 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~~~-----------~~~~A~~~~~~~~~~~p~~-------- 67 (201)
+..+...|++++|+.+|+-+-+.+.--.-.-..++.+..... ..+.-+...++..+....+
T Consensus 450 A~~ae~~G~~~dAi~LY~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~~~~ 529 (661)
T 2qx5_A 450 ARRADEDGRIYDSILLYQLAEEYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISRQIH 529 (661)
T ss_dssp HHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHTTSC
T ss_pred HHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchhhhhcc
Q ss_pred ------HHHHHHHHHHH--HhcCCHHHHHHHHHHH
Q psy12642 68 ------QETWQELCDLY--LSEGDYAKAVFCMEEL 94 (201)
Q Consensus 68 ------~~~~~~l~~~~--~~~~~~~~A~~~~~~a 94 (201)
...+..+..++ +..|+|+.|+..+++.
T Consensus 530 ~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 530 VKNKEICMLLLNISSIRELYFNKQWQETLSQMELL 564 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
No 309
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=43.08 E-value=78 Score=24.81 Aligned_cols=48 Identities=15% Similarity=0.137 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhcCc--------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy12642 16 YEEALEHLETIIKIDE--------TNTAARKRKICILKAKNKIPEAIKELTEYLKK 63 (201)
Q Consensus 16 ~~~A~~~~~~~l~~~~--------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 63 (201)
++..+..++.++..-| +-..++..++.+|+..+++++|....++++..
T Consensus 176 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 176 YEQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 3445555566655433 33478888999999999999999999999875
No 310
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=42.53 E-value=1e+02 Score=24.38 Aligned_cols=33 Identities=12% Similarity=-0.149 Sum_probs=28.5
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q psy12642 32 TNTAARKRKICILKAKNKIPEAIKELTEYLKKF 64 (201)
Q Consensus 32 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 64 (201)
+...++..++.+|+..+++++|....++++...
T Consensus 201 tk~aA~allArvyL~~~~~~~A~~~a~~vi~~~ 233 (495)
T 3lew_A 201 DNEVVLGILSRACLYARQWEKAKTYSDKLLAKD 233 (495)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 334788889999999999999999999998753
No 311
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=41.43 E-value=54 Score=19.38 Aligned_cols=54 Identities=13% Similarity=-0.030 Sum_probs=26.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCC-HHHHH-----HHHHHHHhcCCHHHHHHHHHHHhh
Q psy12642 41 ICILKAKNKIPEAIKELTEYLKKFMTD-QETWQ-----ELCDLYLSEGDYAKAVFCMEELFL 96 (201)
Q Consensus 41 a~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~-----~l~~~~~~~~~~~~A~~~~~~al~ 96 (201)
|..++..|+|=+|-+.++..-...|+. ...|. ..|..+...|+. |...+.+++.
T Consensus 8 ~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 8 VLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 444555567767766666666555432 11111 122333445555 5555555543
No 312
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=40.58 E-value=88 Score=21.57 Aligned_cols=79 Identities=11% Similarity=0.156 Sum_probs=58.2
Q ss_pred HHHHHHHHhcCC------C---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHcCCcccHHH
Q psy12642 55 KELTEYLKKFMT------D---QETWQELCDLYLSEGDYAKAVFCMEELFLH--HPHNHLLHQRYADILYTQGGLENIEL 123 (201)
Q Consensus 55 ~~~~~~~~~~p~------~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~~~~ 123 (201)
..++++++...+ | ..+|...+..+ ..++..++...|.-+... ....+..+...|..+...| ++.+
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g---~~~~ 133 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQ---FFLE 133 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcC---CHHH
Confidence 578888875433 3 34566665544 244477888888877754 4556778888899999999 9999
Q ss_pred HHHHHHHHHcCCcc
Q psy12642 124 AISHYLMAINLNEK 137 (201)
Q Consensus 124 A~~~~~~al~~~p~ 137 (201)
|...|+.+++..-.
T Consensus 134 A~~Vy~~GI~~~A~ 147 (202)
T 3esl_A 134 AKVLLELGAENNCR 147 (202)
T ss_dssp HHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHcCCc
Confidence 99999999987743
No 313
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=40.28 E-value=2.2e+02 Score=26.07 Aligned_cols=31 Identities=13% Similarity=0.059 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Q psy12642 15 RYEEALEHLETIIKIDETNTAARKRKICILK 45 (201)
Q Consensus 15 ~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~ 45 (201)
+.+++.++|+.+++..|++..++..+...+.
T Consensus 1122 ~~~~~~~~~~~l~~~~P~~l~~~~~~l~~l~ 1152 (1354)
T 3lxu_X 1122 ELEMAEKIYNDVVAAHPKHLQANLLLIQNIE 1152 (1354)
T ss_dssp CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHCCccHHHHHHHHHhhh
Confidence 5678899999999999999988887766544
No 314
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=40.00 E-value=67 Score=25.08 Aligned_cols=32 Identities=19% Similarity=0.038 Sum_probs=27.7
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy12642 32 TNTAARKRKICILKAKNKIPEAIKELTEYLKK 63 (201)
Q Consensus 32 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 63 (201)
+-..++..++.+|+..|++++|....++++..
T Consensus 194 tk~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 194 NRWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp CHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 34578888999999999999999999999863
No 315
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=39.53 E-value=1.4e+02 Score=23.50 Aligned_cols=24 Identities=8% Similarity=0.075 Sum_probs=12.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q psy12642 71 WQELCDLYLSEGDYAKAVFCMEEL 94 (201)
Q Consensus 71 ~~~l~~~~~~~~~~~~A~~~~~~a 94 (201)
|..+|-.+++.+++.+|+..+-.+
T Consensus 321 YtYlgGy~yR~~~~reAl~~WA~A 344 (550)
T 3u84_A 321 YMYLAGYHCRNRNVREALQAWADT 344 (550)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred eeecchhhhhcchHHHHHHHHHHH
Confidence 334455555555555555555444
No 316
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=39.00 E-value=81 Score=24.80 Aligned_cols=46 Identities=17% Similarity=0.290 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhcCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q psy12642 51 PEAIKELTEYLKKFMT--------DQETWQELCDLYLSEGDYAKAVFCMEELFL 96 (201)
Q Consensus 51 ~~A~~~~~~~~~~~p~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 96 (201)
+..+..++.++..-|. ...++..++.+|+..++|++|+...++++.
T Consensus 155 ~~I~~DL~~A~~~Lp~~~~~gr~tk~aA~allarvyL~~~~~~~A~~~a~~vi~ 208 (481)
T 3jq1_A 155 AQAKEDLKTAASLLPITNKIGKPTQGAAYAALGKIYVYEENWQEAINVLEPLTQ 208 (481)
T ss_dssp HHHHHHHHHHHHHSCSSCSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHGGGGS
T ss_pred HHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3344555566665553 145778899999999999999999998874
No 317
>3fap_B FRAP, FKBP12-rapamycin associated protein; complex, gene therapy, cell cycle; HET: ARD; 1.85A {Homo sapiens} SCOP: a.24.7.1 PDB: 2fap_B* 2rse_B 1nsg_B* 4fap_B* 1aue_A 2gaq_A 1fap_B*
Probab=38.43 E-value=62 Score=19.21 Aligned_cols=54 Identities=13% Similarity=0.018 Sum_probs=26.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcC
Q psy12642 75 CDLYLSEGDYAKAVFCMEELFLH---HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134 (201)
Q Consensus 75 ~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~ 134 (201)
+..|+..++.+..+..+..+... .|.... -.+....... +..+|.+++++..+.
T Consensus 17 sr~~f~~~n~~~m~~~L~pLh~~l~~~peT~~---E~sF~~~fG~---~L~~A~~~~~~y~~t 73 (94)
T 3fap_B 17 SRLYFGERNVKGMFEVLEPLHAMMERGPQTLK---ETSFNQAYGR---DLMEAQEWCRKYMKS 73 (94)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHCCCSHH---HHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHhccCCHHHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHH---HHHHHHHHHHHHHHh
Confidence 34566666777666666665543 344322 1111111222 556666666655443
No 318
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=37.52 E-value=1.3e+02 Score=22.61 Aligned_cols=28 Identities=21% Similarity=0.330 Sum_probs=24.8
Q ss_pred CCCHHHHHHHHHHHHHcCCcccHHHHHHHHH
Q psy12642 99 PHNHLLHQRYADILYTQGGLENIELAISHYL 129 (201)
Q Consensus 99 ~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~ 129 (201)
-.++..+..+|..+...+ ++.+|..+|-
T Consensus 133 ~Gdp~LH~~ig~~~~~e~---~~~~Ae~H~i 160 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEG---EFEAAEKHLV 160 (336)
T ss_dssp TCCHHHHHHHHHHHHHTT---CHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHccC---CHHHHHHHHH
Confidence 367899999999999999 9999999884
No 319
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=37.31 E-value=97 Score=24.28 Aligned_cols=29 Identities=21% Similarity=0.301 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q psy12642 69 ETWQELCDLYLSEGDYAKAVFCMEELFLH 97 (201)
Q Consensus 69 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 97 (201)
.++..++.+|+..|+|++|....++++..
T Consensus 198 aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 198 SAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 47778899999999999999999999853
No 320
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=36.40 E-value=1.4e+02 Score=23.71 Aligned_cols=29 Identities=10% Similarity=0.194 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q psy12642 68 QETWQELCDLYLSEGDYAKAVFCMEELFL 96 (201)
Q Consensus 68 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 96 (201)
..++..++.+|+..++|++|....++++.
T Consensus 182 ~aA~allarv~L~~~~~~~A~~~a~~vi~ 210 (517)
T 3qnk_A 182 GAAYALKSRVELYDKRYEDVIKSCAEVYK 210 (517)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677788888888889888888888875
No 321
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=32.62 E-value=1.8e+02 Score=22.82 Aligned_cols=28 Identities=11% Similarity=0.005 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Q psy12642 101 NHLLHQRYADILYTQGGLENIELAISHYLMA 131 (201)
Q Consensus 101 ~~~~~~~la~~~~~~~~~~~~~~A~~~~~~a 131 (201)
....+..+|..+++.+ ++.+|++.+-.+
T Consensus 302 hvYPYtYlgG~~~R~~---~~~eAl~~wa~a 329 (489)
T 4gq4_A 302 HIYPYMYLAGYHCRNR---NVREALQAWADT 329 (489)
T ss_dssp CSHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred cccceeecchHHHHhh---hHHHHHHHhhhh
Confidence 3445555666666666 666666666655
No 322
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=32.60 E-value=48 Score=20.58 Aligned_cols=14 Identities=7% Similarity=0.126 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHhc
Q psy12642 16 YEEALEHLETIIKI 29 (201)
Q Consensus 16 ~~~A~~~~~~~l~~ 29 (201)
.++|+.++.++++.
T Consensus 15 l~kAi~lv~~Ave~ 28 (117)
T 2cpt_A 15 LQKAIDLASKAAQE 28 (117)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56778777777643
No 323
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=31.70 E-value=75 Score=18.14 Aligned_cols=8 Identities=25% Similarity=0.331 Sum_probs=3.0
Q ss_pred CCHHHHHH
Q psy12642 82 GDYAKAVF 89 (201)
Q Consensus 82 ~~~~~A~~ 89 (201)
|+|++|+.
T Consensus 27 g~y~eAl~ 34 (85)
T 2v6x_A 27 TQYEEAYT 34 (85)
T ss_dssp TCHHHHHH
T ss_pred CCHHHHHH
Confidence 33333333
No 324
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=31.34 E-value=83 Score=18.55 Aligned_cols=25 Identities=16% Similarity=0.126 Sum_probs=14.3
Q ss_pred HHHHHHHHHHcCCcccHHHHHHHHHHHH
Q psy12642 105 HQRYADILYTQGGLENIELAISHYLMAI 132 (201)
Q Consensus 105 ~~~la~~~~~~~~~~~~~~A~~~~~~al 132 (201)
...-|.-++..+ +|.+|...|+++.
T Consensus 56 ~i~eak~~y~~~---ny~ea~~l~~k~~ 80 (106)
T 2vkj_A 56 LIAEGKDLFETA---NYGEALVFFEKAL 80 (106)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc---chhHHHHHHHHHH
Confidence 334444555566 6666666666665
No 325
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=31.07 E-value=1.9e+02 Score=22.55 Aligned_cols=17 Identities=29% Similarity=-0.029 Sum_probs=12.5
Q ss_pred cHHHHHHHHHHHHcCCc
Q psy12642 120 NIELAISHYLMAINLNE 136 (201)
Q Consensus 120 ~~~~A~~~~~~al~~~p 136 (201)
.++.|+..++..+....
T Consensus 107 ~~E~ai~l~k~L~~~yE 123 (436)
T 2yin_A 107 MWEEAISLCKELAEQYE 123 (436)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 78888888887775443
No 326
>3s6n_M SurviVal motor neuron protein; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2leh_B
Probab=30.88 E-value=43 Score=15.79 Aligned_cols=15 Identities=13% Similarity=0.239 Sum_probs=9.3
Q ss_pred cHHHHHHHHHHHHcC
Q psy12642 120 NIELAISHYLMAINL 134 (201)
Q Consensus 120 ~~~~A~~~~~~al~~ 134 (201)
-|++|+..|+.+++.
T Consensus 17 ayDKAVaSfk~alk~ 31 (37)
T 3s6n_M 17 AYDKAVASFKHALKN 31 (37)
T ss_pred HHHHHHHHHHHHHhc
Confidence 366666666666654
No 327
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=30.39 E-value=64 Score=25.24 Aligned_cols=30 Identities=17% Similarity=0.124 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q psy12642 68 QETWQELCDLYLSEGDYAKAVFCMEELFLH 97 (201)
Q Consensus 68 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 97 (201)
..++..++.+|+.+++|++|....++++..
T Consensus 191 ~aA~aLlARvyL~~~~~~~A~~~a~~vi~~ 220 (460)
T 3snx_A 191 DVVNGLMARAYLLTGQWGEAAKAAEAARKG 220 (460)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 346677788888888888888888888753
No 328
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=29.85 E-value=1.2e+02 Score=23.77 Aligned_cols=95 Identities=8% Similarity=0.034 Sum_probs=56.1
Q ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-----CCCCHHHHHHHH
Q psy12642 38 KRKICILKAKN---KIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLH-----HPHNHLLHQRYA 109 (201)
Q Consensus 38 ~~~a~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~la 109 (201)
..+-++++..| +|.-|+..+-.+-+..|.... ..++..|.+++.. ...+...+..+|
T Consensus 261 q~LLWlLyd~GhL~rYPmALgnLgDLEe~~pt~gr---------------~~~~~L~~~AI~sa~~~Y~n~HvYPYtYlg 325 (550)
T 3u84_A 261 QKLLWLLYDLGHLERYPMALGNLADLEELEPTPGR---------------PDPLTLYHKGIASAKTYYRDEHIYPYMYLA 325 (550)
T ss_dssp HHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTC---------------CCHHHHHHHHHHHHHHHSTTCCSHHHHHHH
T ss_pred HHHHHHHHhccchhhCchhhcchhhHhhcCCCCCC---------------CCHHHHHHHHHHHHHHHhccCCccceeecc
Confidence 44555555555 355566655555555554310 1134444444432 334566788899
Q ss_pred HHHHHcCCcccHHHHHHHHHHHHcC------CcccHHHHHHHHHHHH
Q psy12642 110 DILYTQGGLENIELAISHYLMAINL------NEKNIRALYGLALSCH 150 (201)
Q Consensus 110 ~~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~ 150 (201)
..+++.+ ++.+|+..+-.+-.. ..++.+.|..+-.+..
T Consensus 326 Gy~yR~~---~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eIAn 369 (550)
T 3u84_A 326 GYHCRNR---NVREALQAWADTATVIQDYNYCREDEEIYKEFFEVAN 369 (550)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHH
T ss_pred hhhhhcc---hHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHH
Confidence 9999999 999999999876432 2355666655544433
No 329
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=28.52 E-value=1.5e+02 Score=21.53 Aligned_cols=49 Identities=16% Similarity=0.130 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHHhcCCCHH---HHHHHHHHHH-hcCCHHHHHHHHHHHhh
Q psy12642 48 NKIPEAIKELTEYLKKFMTDQE---TWQELCDLYL-SEGDYAKAVFCMEELFL 96 (201)
Q Consensus 48 ~~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~-~~~~~~~A~~~~~~al~ 96 (201)
.-|++|.....+-+...|.+|- ...+.+.+|+ -.++.++|....++++.
T Consensus 173 ~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFd 225 (268)
T 3efz_A 173 EFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQ 225 (268)
T ss_dssp HHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4456666655543322455542 2233344444 45677776666665553
No 330
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=27.81 E-value=43 Score=19.71 Aligned_cols=13 Identities=15% Similarity=0.350 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHh
Q psy12642 16 YEEALEHLETIIK 28 (201)
Q Consensus 16 ~~~A~~~~~~~l~ 28 (201)
|++|..++.++|.
T Consensus 13 h~~AF~~Is~aL~ 25 (89)
T 3eab_A 13 HKQAFEYISIALR 25 (89)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 331
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=32.88 E-value=13 Score=30.78 Aligned_cols=50 Identities=12% Similarity=-0.063 Sum_probs=42.7
Q ss_pred HHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhhhh
Q psy12642 106 QRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKC 158 (201)
Q Consensus 106 ~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a 158 (201)
...|...+..| +|.-|.+....++..+|++..+...++.++.++|...+.
T Consensus 465 ~~~a~~~~~~g---~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~~ 514 (668)
T 2yhe_A 465 LKQMRAAIDKG---DYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTEN 514 (668)
Confidence 44556666778 999999999999999999999999999999999976665
No 332
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=25.62 E-value=0.3 Score=38.96 Aligned_cols=80 Identities=16% Similarity=0.111 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHHHHH
Q psy12642 68 QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLAL 147 (201)
Q Consensus 68 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 147 (201)
+.+|..+|.+.+..+...+|+..|-++ +|+..+.....+....| .+++-+.+++-+-+.- .++..=..|..
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~---~~edLv~yL~MaRk~~-ke~~IDteLi~ 124 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSG---NWEELVKYLQMARKKA-RESYVETELIF 124 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSS---CCTTHHHHHHTTSTTC-CSTTTTHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHh-cccccHHHHHH
Confidence 455666666666666666655555322 22222333333334445 5555555555444332 12222334445
Q ss_pred HHHHhhhhh
Q psy12642 148 SCHQVLTSA 156 (201)
Q Consensus 148 ~~~~~~~~~ 156 (201)
+|.+.++..
T Consensus 125 ayAk~~rL~ 133 (624)
T 3lvg_A 125 ALAKTNRLA 133 (624)
T ss_dssp HHHTSCSSS
T ss_pred HHHhhCcHH
Confidence 555554433
No 333
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=25.31 E-value=2.5e+02 Score=22.07 Aligned_cols=121 Identities=5% Similarity=-0.044 Sum_probs=64.3
Q ss_pred cHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc------CC
Q psy12642 33 NTAARKRKICILKAKN--KIPEAIKELTEYLKK-----FMTDQETWQELCDLYLSEGDYAKAVFCMEELFLH------HP 99 (201)
Q Consensus 33 ~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~-----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------~~ 99 (201)
.|.++..+|.+--... ....++..|++++.. .......|..+|-.+++.+++.+|+..+..+-.. ..
T Consensus 261 YPmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~r 340 (489)
T 4gq4_A 261 YPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCR 340 (489)
T ss_dssp CHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCT
T ss_pred cchhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhhhhhhccccc
Confidence 3444444544433221 123355667766652 1223445667788889999999999999877542 34
Q ss_pred CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcC-----CcccHHHHHHHHHHHHHhhhhhhh
Q psy12642 100 HNHLLHQRYADILYTQGGLENIELAISHYLMAINL-----NEKNIRALYGLALSCHQVLTSAKC 158 (201)
Q Consensus 100 ~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~~~~~~a 158 (201)
+|...+-.+-.+.... ...-++.-.....- -..++..+..+-..|-..=.+++.
T Consensus 341 eDeEiYke~~eIanel-----ip~~lk~~~~~~~~~~~~~~l~dp~c~a~lL~fyDgiC~WEEG 399 (489)
T 4gq4_A 341 EDEEIYKEFFEVANDV-----IPNLLKEAASLLEAGSQGSALQDPECFAHLLRFYDGICKWEEG 399 (489)
T ss_dssp TCHHHHHHHHHHHHTH-----HHHHHHHHHHHHHTTCSSCGGGCHHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHh-----hhHHHHHhhhcccccccccCCCCcchhhhhccccCCcchhhcC
Confidence 5666665554432211 11111111111111 124567777776666666666555
No 334
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=25.04 E-value=1.6e+02 Score=23.28 Aligned_cols=31 Identities=23% Similarity=0.120 Sum_probs=27.2
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy12642 33 NTAARKRKICILKAKNKIPEAIKELTEYLKK 63 (201)
Q Consensus 33 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 63 (201)
...++..++.+++..+++++|....++++..
T Consensus 181 k~aA~allarv~L~~~~~~~A~~~a~~vi~~ 211 (517)
T 3qnk_A 181 KGAAYALKSRVELYDKRYEDVIKSCAEVYKL 211 (517)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3478888999999999999999999999863
No 335
>3i4g_A SUSD-like carbohydrate binding protein BF1063; structural genomics, center for structural genomics, JCSG; HET: MSE EPE; 1.35A {Bacteroides fragilis nctc 9343}
Probab=24.63 E-value=2.1e+02 Score=22.86 Aligned_cols=28 Identities=7% Similarity=0.117 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q psy12642 69 ETWQELCDLYLSEGDYAKAVFCMEELFL 96 (201)
Q Consensus 69 ~~~~~l~~~~~~~~~~~~A~~~~~~al~ 96 (201)
.++..++.+|+..++|++|....++++.
T Consensus 199 aA~allarv~L~~~~~~~A~~~a~~vi~ 226 (528)
T 3i4g_A 199 AALAFLGRTCMLQKDWKSGAKAFHDIME 226 (528)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 4666778888888888888888887774
No 336
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=23.19 E-value=1.2e+02 Score=17.67 Aligned_cols=28 Identities=11% Similarity=0.341 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q psy12642 50 IPEAIKELTEYLKKFMTDQETWQELCDL 77 (201)
Q Consensus 50 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 77 (201)
++.|+.+++++-....+++..|...-.+
T Consensus 10 ~~~A~~YvnkVK~rF~~~p~~Y~~FL~I 37 (89)
T 1g1e_B 10 FNHAINYVNKIKNRFQGQPDIYKAFLEI 37 (89)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 3456666666665555565555554433
No 337
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=23.06 E-value=2e+02 Score=20.21 Aligned_cols=52 Identities=12% Similarity=-0.007 Sum_probs=36.0
Q ss_pred hcCCHHHHHHHHHHHhhc-----CCCCH---HHHHHHHHHHHH-cCCcccHHHHHHHHHHHHcC
Q psy12642 80 SEGDYAKAVFCMEELFLH-----HPHNH---LLHQRYADILYT-QGGLENIELAISHYLMAINL 134 (201)
Q Consensus 80 ~~~~~~~A~~~~~~al~~-----~~~~~---~~~~~la~~~~~-~~~~~~~~~A~~~~~~al~~ 134 (201)
..|+.+.|...|+.|..+ .|.+| ....+.+..++. ++ +.++|....++++..
T Consensus 137 ~~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln---~p~~Ac~lAk~Afd~ 197 (227)
T 2o8p_A 137 GLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYG---EKKQVFNMLNSLGKI 197 (227)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSS---CHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHH
Confidence 456688889999888753 34443 455566666654 45 889999998888763
No 338
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=21.40 E-value=0.16 Score=40.49 Aligned_cols=81 Identities=17% Similarity=0.341 Sum_probs=53.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHcCCcccHHHHHH
Q psy12642 65 MTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYG 144 (201)
Q Consensus 65 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 144 (201)
.+++.+|-....++...+++.-|..+--..+-. |+. +-.+...|...| -+++-+..++.++.+..-+......
T Consensus 196 Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh-ade---L~elv~~YE~~G---~f~ELIsLlEaglglErAHmGmFTE 268 (624)
T 3lvg_A 196 ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-ADE---LEELINYYQDRG---YFEELITMLEAALGLERAHMGMFTE 268 (624)
T ss_dssp CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-SSC---CSGGGSSSSTTC---CCTTSTTTHHHHTTSTTCCHHHHHH
T ss_pred cCChhHHHHHHHHHhCchHHHHHHHhcchhccc-HHH---HHHHHHHHHhCC---CHHHHHHHHHHHhCCCchhHHHHHH
Confidence 345556777777777777777666665554432 221 122334455666 7888888888888888778888888
Q ss_pred HHHHHHHh
Q psy12642 145 LALSCHQV 152 (201)
Q Consensus 145 l~~~~~~~ 152 (201)
||.+|.+-
T Consensus 269 LaILYsKY 276 (624)
T 3lvg_A 269 LAILYSKF 276 (624)
T ss_dssp HHHHHHSS
T ss_pred HHHHHHhc
Confidence 88888764
No 339
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.17 E-value=2.8e+02 Score=21.11 Aligned_cols=89 Identities=17% Similarity=0.175 Sum_probs=56.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhc----C-----------CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc------
Q psy12642 41 ICILKAKNKIPEAIKELTEYLKKF----M-----------TD--QETWQELCDLYLSEGDYAKAVFCMEELFLH------ 97 (201)
Q Consensus 41 a~~~~~~~~~~~A~~~~~~~~~~~----p-----------~~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------ 97 (201)
..+.....+.+++++.+++..... . .. ..+...++..|...|+.++|...++++-..
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~ 162 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS 162 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence 334556788999999988763311 0 01 345666788999999999999999888642
Q ss_pred -CCC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Q psy12642 98 -HPH-NHLLHQRYADILYTQGGLENIELAISHYLMAI 132 (201)
Q Consensus 98 -~~~-~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al 132 (201)
+|. ....+...+..+...+ ++..+.......+
T Consensus 163 ~~~~v~~~~y~~~~~~~~~~~---~~a~~y~~~l~~l 196 (393)
T 4b4t_O 163 IPLRITNSFYSTNSQYFKFKN---DFNSFYYTSLLYL 196 (393)
T ss_dssp SSSHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHH
Confidence 111 1223444566666667 7766665555554
No 340
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=20.90 E-value=79 Score=21.46 Aligned_cols=23 Identities=22% Similarity=0.518 Sum_probs=16.8
Q ss_pred HHHhhhhccCHHHHHHHHHHHHh
Q psy12642 6 YIIGCFHFFRYEEALEHLETIIK 28 (201)
Q Consensus 6 ~~~~~~~~~~~~~A~~~~~~~l~ 28 (201)
.+.++.+.|++++|.+++.+...
T Consensus 38 vI~GLlql~~ydea~~yI~~~~~ 60 (192)
T 1ixm_A 38 LIKGNLSLQKYDRVFEMIEEMVI 60 (192)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 35667778888888888777654
No 341
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=26.18 E-value=21 Score=29.66 Aligned_cols=45 Identities=24% Similarity=0.239 Sum_probs=39.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcC
Q psy12642 72 QELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQG 116 (201)
Q Consensus 72 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 116 (201)
...+.-.+..|+|.-|.+..+.++..+|+|..+...++.++..+|
T Consensus 465 ~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~ 509 (668)
T 2yhe_A 465 LKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLG 509 (668)
Confidence 345566778899999999999999999999999998888888887
No 342
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=20.14 E-value=1.5e+02 Score=23.24 Aligned_cols=31 Identities=13% Similarity=-0.058 Sum_probs=27.3
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy12642 33 NTAARKRKICILKAKNKIPEAIKELTEYLKK 63 (201)
Q Consensus 33 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 63 (201)
...++..++.+|+..|++++|....++++..
T Consensus 196 k~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 196 KLSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 3467888999999999999999999999864
Done!