RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12642
(201 letters)
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 60.9 bits (148), Expect = 6e-12
Identities = 19/150 (12%), Positives = 42/150 (28%), Gaps = 18/150 (12%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKIC----------------ILKAKNKIPEAIKELT 58
+ +A+ + I ++ T K +A
Sbjct: 19 QNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYK 78
Query: 59 EYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGL 118
E L+K + + + ++ + G A+ E++ N + + Y
Sbjct: 79 ELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA-- 136
Query: 119 ENIELAISHYLMAINLNEKNIRALYGLALS 148
E + + ++ K A Y LS
Sbjct: 137 EQEKKKLETDYKKLSSPTKMQYARYRDGLS 166
Score = 37.4 bits (87), Expect = 0.001
Identities = 17/106 (16%), Positives = 37/106 (34%), Gaps = 2/106 (1%)
Query: 15 RYEEALEHLETIIKIDETNTAAR-KRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQE 73
+ ++AL E I++++ N AA + + ++ + L Q
Sbjct: 103 QEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYR 162
Query: 74 LCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLE 119
L Y KA ++++ L P + + IL + +
Sbjct: 163 DGLSKLFTTRYEKARNSLQKVILRFP-STEAQKTLDKILRIEKEVN 207
Score = 33.6 bits (77), Expect = 0.024
Identities = 11/72 (15%), Positives = 24/72 (33%), Gaps = 1/72 (1%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
+ ++ LE + AR R + +A L + + +F E + L
Sbjct: 138 QEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF-PSTEAQKTL 196
Query: 75 CDLYLSEGDYAK 86
+ E + +
Sbjct: 197 DKILRIEKEVNR 208
Score = 30.9 bits (70), Expect = 0.22
Identities = 11/99 (11%), Positives = 22/99 (22%), Gaps = 19/99 (19%)
Query: 69 ETWQELCDLYLSEGDYAKAVFCMEE----------------LFLHHPHNHLLHQRYADIL 112
+ + + G +AV + + + + L A
Sbjct: 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAY 64
Query: 113 YTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 151
N + A Y + N+ L A
Sbjct: 65 KKNR---NYDKAYLFYKELLQKAPNNVDCLEACAEMQVC 100
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 61.3 bits (149), Expect = 2e-11
Identities = 25/143 (17%), Positives = 53/143 (37%), Gaps = 6/143 (4%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
Y++A + + ++D N + C+ +NK + +E +KF E
Sbjct: 319 NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFF 378
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGG------LENIELAISHY 128
++ + D+ KA+ + ++ A ++ +EN A +
Sbjct: 379 AEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLL 438
Query: 129 LMAINLNEKNIRALYGLALSCHQ 151
A L+ ++ +A GLA Q
Sbjct: 439 EKASKLDPRSEQAKIGLAQMKLQ 461
Score = 60.5 bits (147), Expect = 3e-11
Identities = 22/151 (14%), Positives = 50/151 (33%), Gaps = 3/151 (1%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
E + + +K+D N++ + + +A K+ + + + + +L
Sbjct: 285 DSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQL 344
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
L E + E P + +A+IL + + + A+ Y +AI L
Sbjct: 345 ACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKN---DFDKALKQYDLAIEL 401
Query: 135 NEKNIRALYGLALSCHQVLTSAKCSAAKKKE 165
K G+A + + +
Sbjct: 402 ENKLDGIYVGIAPLVGKATLLTRNPTVENFI 432
Score = 49.4 bits (118), Expect = 2e-07
Identities = 19/132 (14%), Positives = 46/132 (34%), Gaps = 4/132 (3%)
Query: 16 YEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELC 75
+EE L+ K+ E + + KN A +++ + ++ F ++ +
Sbjct: 219 FEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF-PRVNSYIYMA 277
Query: 76 DLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLN 135
+ D + ++ +N ++ + + N + A + A L+
Sbjct: 278 LIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQ---NYDQAGKDFDKAKELD 334
Query: 136 EKNIRALYGLAL 147
+NI LA
Sbjct: 335 PENIFPYIQLAC 346
Score = 47.4 bits (113), Expect = 8e-07
Identities = 17/142 (11%), Positives = 43/142 (30%), Gaps = 12/142 (8%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETW--- 71
++++ + IL KN +A+K+ ++ +
Sbjct: 353 KFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGI 412
Query: 72 ------QELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAI 125
L + ++ +A +E+ P + A + Q +I+ AI
Sbjct: 413 APLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQE---DIDEAI 469
Query: 126 SHYLMAINLNEKNIRALYGLAL 147
+ + + +L L +
Sbjct: 470 TLFEESADLARTMEEKLQAITF 491
Score = 45.5 bits (108), Expect = 3e-06
Identities = 16/141 (11%), Positives = 45/141 (31%), Gaps = 1/141 (0%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
+Y++A+++ +++ E C + + + ++ T+ L+ +
Sbjct: 21 KYDDAIKYYNWALELKEDPVFYSNLSAC-YVSVGDLKKVVEMSTKALELKPDYSKVLLRR 79
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
G +A A+F + L L+ N + + + + ++ A
Sbjct: 80 ASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATAT 139
Query: 135 NEKNIRALYGLALSCHQVLTS 155
+ + L S
Sbjct: 140 PTELSTQPAKERKDKQENLPS 160
Score = 40.5 bits (95), Expect = 2e-04
Identities = 18/147 (12%), Positives = 40/147 (27%), Gaps = 16/147 (10%)
Query: 14 FRYEEALEHLETIIKIDETNTAA------------RKRKICILKAKNKIPEAIKELTEYL 61
F+ E + + + D+ K KA E + + E
Sbjct: 171 FKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDE 230
Query: 62 KKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENI 121
K + + + D A +++ P + A I+ + +
Sbjct: 231 KLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYM-ALIMADRN---DS 286
Query: 122 ELAISHYLMAINLNEKNIRALYGLALS 148
+++ A+ L+ N Y
Sbjct: 287 TEYYNYFDKALKLDSNNSSVYYHRGQM 313
Score = 38.6 bits (90), Expect = 8e-04
Identities = 19/145 (13%), Positives = 46/145 (31%), Gaps = 13/145 (8%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELT----------EYLKKF 64
++ +E +++ + R+ + K +A+ +L+ ++
Sbjct: 54 DLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPM 113
Query: 65 MTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQR---YADILYTQGGLENI 121
+ Q + L GD A EL Q + + G+
Sbjct: 114 LERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKP 173
Query: 122 ELAISHYLMAINLNEKNIRALYGLA 146
EL ++Y + +++ + L L
Sbjct: 174 ELTFANYDESNEADKELMNGLSNLY 198
Score = 31.3 bits (71), Expect = 0.19
Identities = 7/83 (8%), Positives = 24/83 (28%), Gaps = 4/83 (4%)
Query: 69 ETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHY 128
++ + + Y A+ + + + + + G +++ +
Sbjct: 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVG---DLKKVVEMS 62
Query: 129 LMAINLNEKNIRALYGLALSCHQ 151
A+ L + L A +
Sbjct: 63 TKALELKPDYSKVLLRRASANEG 85
Score = 28.6 bits (64), Expect = 1.7
Identities = 16/163 (9%), Positives = 38/163 (23%), Gaps = 27/163 (16%)
Query: 15 RYEEALEHLETIIKIDETNTAARKR---KICILKAKNKIPEAIKELTEYLKKF------- 64
++ +A+ L + + N A+ + + +A +K+ E ++
Sbjct: 88 KFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQP 147
Query: 65 ------MTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHP----------HNHLLHQRY 108
+ + +E
Sbjct: 148 AKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDK 207
Query: 109 ADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 151
AD +T+ E + L EK +L +
Sbjct: 208 ADESFTKA-ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL 249
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 60.9 bits (148), Expect = 3e-11
Identities = 31/148 (20%), Positives = 57/148 (38%), Gaps = 18/148 (12%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
+ + AL L +I++ TAAR ++ +L + K+ EA + + LK ++ E +
Sbjct: 75 KSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQ 134
Query: 75 CDL---------------YLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLE 119
L GDY A+ ++++ + L + A+ +G
Sbjct: 135 SQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEG--- 191
Query: 120 NIELAISHYLMAINLNEKNIRALYGLAL 147
AIS A L N A Y ++
Sbjct: 192 EPRKAISDLKAASKLKNDNTEAFYKIST 219
Score = 53.9 bits (130), Expect = 5e-09
Identities = 26/171 (15%), Positives = 52/171 (30%), Gaps = 19/171 (11%)
Query: 15 RYEEALEHLETIIKIDETNTAAR------------KRKICILKAKNKIPEAIKELTEYLK 62
+E +L + +K+D+ + L + +A + +K
Sbjct: 226 DHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK 285
Query: 63 KFMTDQETWQEL----CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGL 118
+ E C + + +A+ E+ P N + A+
Sbjct: 286 TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYL---IE 342
Query: 119 ENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQ 169
E + AI Y A NE + + GL + + S K K + +
Sbjct: 343 EMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRN 393
Score = 52.4 bits (126), Expect = 2e-08
Identities = 22/166 (13%), Positives = 58/166 (34%), Gaps = 18/166 (10%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKA---------------KNKIPEAIKELTE 59
+ +EA + + ++K + + ++ + ++K+ AI L +
Sbjct: 109 KLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDK 168
Query: 60 YLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLE 119
L+ + D E + + ++ EG+ KA+ ++ N + + + Y G
Sbjct: 169 ILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLG--- 225
Query: 120 NIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKE 165
+ EL++S + L++ + R +
Sbjct: 226 DHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDG 271
Score = 48.1 bits (115), Expect = 4e-07
Identities = 29/143 (20%), Positives = 56/143 (39%), Gaps = 10/143 (6%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKIC----ILKAKNKIPEAIKELTEYLKKFMTDQET 70
RY +A E+++K + + R K EAI+ +E L+ +
Sbjct: 272 RYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNA 331
Query: 71 WQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLM 130
++ + YL E Y +A+ E H+ ++ + + Q L+ + + ++
Sbjct: 332 LKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA---QRLLKQSQKRDYYKIL 388
Query: 131 AINLNEKN---IRALYGLALSCH 150
+ N K I+A LAL H
Sbjct: 389 GVKRNAKKQEIIKAYRKLALQWH 411
Score = 43.5 bits (103), Expect = 2e-05
Identities = 20/140 (14%), Positives = 43/140 (30%), Gaps = 9/140 (6%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
Y A+ L+ I+++ + R+ + + + +AI +L K + E + ++
Sbjct: 158 DYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKI 217
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHP-----HNHLLHQRYADILYTQG----GLENIELAI 125
LY GD+ ++ + E H + + L A
Sbjct: 218 STLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDAT 277
Query: 126 SHYLMAINLNEKNIRALYGL 145
S Y +
Sbjct: 278 SKYESVMKTEPSIAEYTVRS 297
Score = 43.5 bits (103), Expect = 2e-05
Identities = 20/144 (13%), Positives = 48/144 (33%), Gaps = 12/144 (8%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
+ +AL + D N A R+ + A K A+ +LT+ ++ M +
Sbjct: 41 QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQR 100
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGG------------LENIE 122
L L +G +A +++ +P + + + ++ + +
Sbjct: 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT 160
Query: 123 LAISHYLMAINLNEKNIRALYGLA 146
AI+ + + + A
Sbjct: 161 AAIAFLDKILEVCVWDAELRELRA 184
Score = 35.8 bits (83), Expect = 0.006
Identities = 18/109 (16%), Positives = 35/109 (32%), Gaps = 14/109 (12%)
Query: 43 ILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNH 102
L +N +++ ++ ++L EL L+ G A A+ P N+
Sbjct: 12 DLGTENLYFQSMADVEKHL-----------ELGKKLLAAGQLADALSQFHAAVDGDPDNY 60
Query: 103 LLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 151
+ + R A + G + A+ I L A +
Sbjct: 61 IAYYRRATVFLAMG---KSKAALPDLTKVIQLKMDFTAARLQRGHLLLK 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 59.5 bits (144), Expect = 7e-11
Identities = 17/138 (12%), Positives = 35/138 (25%), Gaps = 3/138 (2%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
L L ++ + A + L E L
Sbjct: 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
+ ++ +A+A +++ P + + L G E A + Y A L
Sbjct: 64 GRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAG---QAEAAAAAYTRAHQL 120
Query: 135 NEKNIRALYGLALSCHQV 152
+ L ++
Sbjct: 121 LPEEPYITAQLLNWRRRL 138
Score = 50.2 bits (120), Expect = 1e-07
Identities = 11/133 (8%), Positives = 30/133 (22%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
++ + + + A R + + + EA L + L
Sbjct: 38 DTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWL 97
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
G A P + + + +++ + A+
Sbjct: 98 GHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157
Query: 135 NEKNIRALYGLAL 147
+ L+
Sbjct: 158 GVGAVEPFAFLSE 170
Score = 42.5 bits (100), Expect = 4e-05
Identities = 9/70 (12%), Positives = 19/70 (27%), Gaps = 3/70 (4%)
Query: 82 GDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRA 141
D + + + H P + + AD G + + L+ + A
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMG---DTTAGEMAVQRGLALHPGHPEA 59
Query: 142 LYGLALSCHQ 151
+ L
Sbjct: 60 VARLGRVRWT 69
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 57.1 bits (137), Expect = 5e-10
Identities = 33/153 (21%), Positives = 53/153 (34%), Gaps = 3/153 (1%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
EEA+ +++ AA +L+ + K+ EA+ E ++ T + + +
Sbjct: 24 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
+ D A+ C +P H A I G NI AI+ Y A+ L
Sbjct: 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSG---NIPEAIASYRTALKL 140
Query: 135 NEKNIRALYGLALSCHQVLTSAKCSAAKKKEIS 167
A LA V KK +S
Sbjct: 141 KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173
Score = 47.1 bits (111), Expect = 1e-06
Identities = 20/110 (18%), Positives = 38/110 (34%), Gaps = 3/110 (2%)
Query: 42 CILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHN 101
I + + I EA++ + L+ F L + +G +A+ +E P
Sbjct: 17 NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 76
Query: 102 HLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 151
+ + L +++ A+ Y AI +N A LA
Sbjct: 77 ADAYSNMGNTLKEMQ---DVQGALQCYTRAIQINPAFADAHSNLASIHKD 123
Score = 29.4 bits (65), Expect = 0.83
Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 7/97 (7%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQE----- 69
+ AL+ I+I+ A I K IPEAI LK +
Sbjct: 92 DVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNL 151
Query: 70 --TWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLL 104
Q +CD + K V + + + +
Sbjct: 152 AHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVH 188
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 54.9 bits (132), Expect = 8e-10
Identities = 21/106 (19%), Positives = 40/106 (37%)
Query: 46 AKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLH 105
++ ++ L + ++ + E W L + YL + DY+ ++ + N L+
Sbjct: 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELY 81
Query: 106 QRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 151
A +LY Q + A+ L+ I AL LA
Sbjct: 82 AALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFM 127
Score = 29.1 bits (65), Expect = 0.62
Identities = 9/83 (10%), Positives = 26/83 (31%), Gaps = 3/83 (3%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNK---IPEAIKELTEYLKKFMTDQETW 71
Y +L +++ N +L + + + + L +
Sbjct: 59 DYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITAL 118
Query: 72 QELCDLYLSEGDYAKAVFCMEEL 94
L + +YA+A+ +++
Sbjct: 119 MLLASDAFMQANYAQAIELWQKV 141
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 56.0 bits (136), Expect = 9e-10
Identities = 23/133 (17%), Positives = 43/133 (32%), Gaps = 3/133 (2%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
+E A H + + + NT I ++ + T +K+ E + L
Sbjct: 14 DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNL 73
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
++Y G +A+ P + A L G ++E A+ Y+ A+
Sbjct: 74 GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAG---DMEGAVQAYVSALQY 130
Query: 135 NEKNIRALYGLAL 147
N L
Sbjct: 131 NPDLYCVRSDLGN 143
Score = 54.9 bits (133), Expect = 2e-09
Identities = 25/137 (18%), Positives = 47/137 (34%), Gaps = 3/137 (2%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
R + + IK + A + K + ++ EAI+ L+ + + L
Sbjct: 48 RLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINL 107
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
++ GD AV ++P + + ++L G +E A + YL AI
Sbjct: 108 AAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALG---RLEEAKACYLKAIET 164
Query: 135 NEKNIRALYGLALSCHQ 151
A L +
Sbjct: 165 QPNFAVAWSNLGCVFNA 181
Score = 52.5 bits (127), Expect = 1e-08
Identities = 25/133 (18%), Positives = 47/133 (35%), Gaps = 3/133 (2%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
+ +EA+EH +++ L A + A++ L+ +L
Sbjct: 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDL 141
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
+L + G +A C + P+ + + QG I LAI H+ A+ L
Sbjct: 142 GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG---EIWLAIHHFEKAVTL 198
Query: 135 NEKNIRALYGLAL 147
+ + A L
Sbjct: 199 DPNFLDAYINLGN 211
Score = 49.8 bits (120), Expect = 1e-07
Identities = 26/133 (19%), Positives = 48/133 (36%), Gaps = 3/133 (2%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
+ A++ I++ A LK K + EA L+ T ++ L
Sbjct: 252 LIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNL 311
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
++ +G+ +AV + P H A +L QG ++ A+ HY AI +
Sbjct: 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG---KLQEALMHYKEAIRI 368
Query: 135 NEKNIRALYGLAL 147
+ A +
Sbjct: 369 SPTFADAYSNMGN 381
Score = 49.5 bits (119), Expect = 1e-07
Identities = 31/137 (22%), Positives = 51/137 (37%), Gaps = 3/137 (2%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
R EEA I+ A C+ A+ +I AI + + + + L
Sbjct: 150 RLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINL 209
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
++ + +AV P++ ++H A + Y QG I+LAI Y AI L
Sbjct: 210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG---LIDLAIDTYRRAIEL 266
Query: 135 NEKNIRALYGLALSCHQ 151
A LA + +
Sbjct: 267 QPHFPDAYCNLANALKE 283
Score = 49.5 bits (119), Expect = 2e-07
Identities = 13/109 (11%), Positives = 31/109 (28%), Gaps = 3/109 (2%)
Query: 43 ILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNH 102
A + + ++ + L ++ ++ +P
Sbjct: 8 REYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLA 67
Query: 103 LLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 151
+ ++ +G ++ AI HY A+ L I LA +
Sbjct: 68 EAYSNLGNVYKERG---QLQEAIEHYRHALRLKPDFIDGYINLAAALVA 113
Score = 48.7 bits (117), Expect = 3e-07
Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 3/137 (2%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
++ A+ + + + C+ + I AI ++ + + L
Sbjct: 218 IFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNL 277
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
+ +G A+A C P + A+I QG NIE A+ Y A+ +
Sbjct: 278 ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG---NIEEAVRLYRKALEV 334
Query: 135 NEKNIRALYGLALSCHQ 151
+ A LA Q
Sbjct: 335 FPEFAAAHSNLASVLQQ 351
Score = 36.8 bits (86), Expect = 0.003
Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 3/81 (3%)
Query: 71 WQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLM 130
EL GD+ A +L+ P N + + I + ++ + +
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCR---RLDRSAHFSTL 58
Query: 131 AINLNEKNIRALYGLALSCHQ 151
AI N A L +
Sbjct: 59 AIKQNPLLAEAYSNLGNVYKE 79
Score = 33.7 bits (78), Expect = 0.028
Identities = 12/69 (17%), Positives = 27/69 (39%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
EEA+ +++ AA +L+ + K+ EA+ E ++ T + + +
Sbjct: 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 379
Query: 75 CDLYLSEGD 83
+ D
Sbjct: 380 GNTLKEMQD 388
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 55.5 bits (134), Expect = 2e-09
Identities = 30/150 (20%), Positives = 49/150 (32%), Gaps = 13/150 (8%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
Y+ A E + ++ N + C+L + K E+ E KF T E
Sbjct: 325 DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFF 384
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLH-------------QRYADILYTQGGLENI 121
++ GD+ A+ + +H R + TQ E
Sbjct: 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF 444
Query: 122 ELAISHYLMAINLNEKNIRALYGLALSCHQ 151
AI A L+ ++ +A GLA Q
Sbjct: 445 NAAIKLLTKACELDPRSEQAKIGLAQLKLQ 474
Score = 50.5 bits (121), Expect = 8e-08
Identities = 18/134 (13%), Positives = 39/134 (29%), Gaps = 4/134 (2%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
Y L + E A KN + +A L E + ++ L
Sbjct: 224 MYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH-PTPNSYIFL 282
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
+ + + ++ +P + + + + + A + A +L
Sbjct: 283 ALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQ---DYKNAKEDFQKAQSL 339
Query: 135 NEKNIRALYGLALS 148
N +N+ LA
Sbjct: 340 NPENVYPYIQLACL 353
Score = 46.6 bits (111), Expect = 2e-06
Identities = 18/149 (12%), Positives = 33/149 (22%), Gaps = 19/149 (12%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLK------------ 62
++ E+ T IL + AIK+ +
Sbjct: 359 KFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGI 418
Query: 63 ----KFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGL 118
T L E + A+ + + P + A +
Sbjct: 419 GPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQME-- 476
Query: 119 ENIELAISHYLMAINLNEKNIRALYGLAL 147
I+ AI + + L L
Sbjct: 477 -KIDEAIELFEDSAILARTMDEKLQATTF 504
Score = 45.9 bits (109), Expect = 3e-06
Identities = 17/135 (12%), Positives = 37/135 (27%), Gaps = 6/135 (4%)
Query: 15 RYEEALEHLETIIKIDETNTAA--RKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQ 72
Y+ A L ++ + T + K+ + + T
Sbjct: 188 NYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALC 247
Query: 73 ELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAI 132
+ + + A ++E HP + A L + N + + A+
Sbjct: 248 YTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFL-ALTLADKE---NSQEFFKFFQKAV 303
Query: 133 NLNEKNIRALYGLAL 147
+LN + Y
Sbjct: 304 DLNPEYPPTYYHRGQ 318
Score = 40.5 bits (95), Expect = 2e-04
Identities = 17/126 (13%), Positives = 36/126 (28%), Gaps = 7/126 (5%)
Query: 15 RYEEALEHLETIIKIDETNTAAR----KRKICILKAKNKIPEAIKELTEYLKKFMTDQET 70
+ + + + + A K + EAIK ++ +
Sbjct: 2 SHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF 61
Query: 71 WQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLM 130
+ + Y+S GD K + + P + R A + G N A+ +
Sbjct: 62 YSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLG---NFTDAMFDLSV 118
Query: 131 AINLNE 136
+
Sbjct: 119 LSLNGD 124
Score = 38.6 bits (90), Expect = 0.001
Identities = 15/137 (10%), Positives = 43/137 (31%), Gaps = 13/137 (9%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
E+ +E ++I ++ A R+ ++ +A+ L + +
Sbjct: 74 DLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAM----FDLSVLSLNGDFDGAS 129
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
+ L +A+ + E R + +L + ++ + + +
Sbjct: 130 IEPMLERNLNKQAMKVLNENLSKD------EGRGSQVLPSNT---SLASFFGIFDSHLEV 180
Query: 135 NEKNIRALYGLALSCHQ 151
+ N + Y A +
Sbjct: 181 SSVNTSSNYDTAYALLS 197
Score = 37.0 bits (86), Expect = 0.002
Identities = 16/149 (10%), Positives = 43/149 (28%), Gaps = 13/149 (8%)
Query: 15 RYEEALEHLETIIKIDETNTAARKR---KICILKAKNKIPEAIKELTEYLKKFMTDQETW 71
+ +A+ L + + + A+ + + +A + E + + + + +
Sbjct: 108 NFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSL 167
Query: 72 QELCDLYLS---------EGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIE 122
++ S +Y A + + A+ L T+ +
Sbjct: 168 ASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKS-TDMYH 226
Query: 123 LAISHYLMAINLNEKNIRALYGLALSCHQ 151
+S + L E AL +
Sbjct: 227 SLLSANTVDDPLRENAALALCYTGIFHFL 255
Score = 31.2 bits (71), Expect = 0.19
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 7/71 (9%)
Query: 82 GDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQG----GLENIELAISHYLMAINLNEK 137
G + + +L P Q YA L +G +N AI +Y AI L+
Sbjct: 1 GSHMNGEPDIAQLKGLSPSQR---QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN 57
Query: 138 NIRALYGLALS 148
++
Sbjct: 58 EPVFYSNISAC 68
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 53.0 bits (128), Expect = 7e-09
Identities = 22/124 (17%), Positives = 44/124 (35%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
+ A++ + + D T + K P AI+ + + ++ TD + + EL
Sbjct: 89 QDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYEL 148
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
Y +Y KA ++ P+ ++ + A Q LA +Y I +
Sbjct: 149 GQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208
Query: 135 NEKN 138
Sbjct: 209 CAPG 212
Score = 50.0 bits (120), Expect = 8e-08
Identities = 21/137 (15%), Positives = 43/137 (31%), Gaps = 6/137 (4%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD---QETW 71
Y EA+E + + R+ K A K++ Y K +
Sbjct: 18 NYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADF 77
Query: 72 QELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMA 131
+ + + +G + A+ + ++ + Y +G N LAI +
Sbjct: 78 EYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKG---NFPLAIQYMEKQ 134
Query: 132 INLNEKNIRALYGLALS 148
I + + Y L +
Sbjct: 135 IRPTTTDPKVFYELGQA 151
Score = 45.3 bits (108), Expect = 3e-06
Identities = 23/152 (15%), Positives = 53/152 (34%), Gaps = 6/152 (3%)
Query: 15 RYEEALEHLET---IIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETW 71
+Y+ A + +ET + + +A + IL K + AI++ + + T + +
Sbjct: 52 KYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMY 111
Query: 72 QELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMA 131
++ + ++G++ A+ ME+ + + Y A S ++
Sbjct: 112 GQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNK---EYVKADSSFVKV 168
Query: 132 INLNEKNIRALYGLALSCHQVLTSAKCSAAKK 163
+ L A + K AK
Sbjct: 169 LELKPNIYIGYLWRARANAAQDPDTKQGLAKP 200
Score = 40.7 bits (96), Expect = 1e-04
Identities = 20/108 (18%), Positives = 31/108 (28%), Gaps = 6/108 (5%)
Query: 43 ILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELF---LHHP 99
L N EAI+ + K + Y Y A +E F
Sbjct: 12 FLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATK 71
Query: 100 HNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLAL 147
+ Y IL +G LAI Y A++ + + +
Sbjct: 72 AKSADFEYYGKILMKKG---QDSLAIQQYQAAVDRDTTRLDMYGQIGS 116
Score = 37.6 bits (88), Expect = 0.001
Identities = 15/145 (10%), Positives = 40/145 (27%), Gaps = 8/145 (5%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
+ A++++E I+ T+ + +A + L+ +
Sbjct: 123 NFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWR 182
Query: 75 CDLYL---SEGDYAKAVFCMEE-LFLHHPHNHLLHQRYADILYTQG----GLENIELAIS 126
+ A E+ + + P + + A +
Sbjct: 183 ARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242
Query: 127 HYLMAINLNEKNIRALYGLALSCHQ 151
+ + L+ N +A+ GL +
Sbjct: 243 AWKNILALDPTNKKAIDGLKMKLEH 267
Score = 33.0 bits (76), Expect = 0.046
Identities = 11/80 (13%), Positives = 24/80 (30%)
Query: 69 ETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHY 128
+ D +YA+A+ +L ++ ++ R A Y + + I Y
Sbjct: 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETY 63
Query: 129 LMAINLNEKNIRALYGLALS 148
+N +
Sbjct: 64 FSKVNATKAKSADFEYYGKI 83
Score = 28.8 bits (65), Expect = 1.2
Identities = 9/47 (19%), Positives = 15/47 (31%), Gaps = 3/47 (6%)
Query: 105 HQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 151
RYAD L+ N AI + + A+ ++
Sbjct: 6 EFRYADFLFKNN---NYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYE 49
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 53.0 bits (128), Expect = 9e-09
Identities = 23/166 (13%), Positives = 58/166 (34%), Gaps = 18/166 (10%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIP---------------EAIKELTE 59
+ +EA + + ++K + + ++ + ++KA AI L +
Sbjct: 86 KLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDK 145
Query: 60 YLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLE 119
L+ + D E + + ++ EG+ KA+ ++ N + + + Y G
Sbjct: 146 ILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLG--- 202
Query: 120 NIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKE 165
+ EL++S + L++ + R +
Sbjct: 203 DHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDG 248
Score = 50.7 bits (122), Expect = 6e-08
Identities = 20/144 (13%), Positives = 45/144 (31%), Gaps = 12/144 (8%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
+ +AL + D N A R+ + A K A+ +LT+ + M +
Sbjct: 18 QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQR 77
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGG------------LENIE 122
L L +G +A +++ +P + + ++ +
Sbjct: 78 GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYT 137
Query: 123 LAISHYLMAINLNEKNIRALYGLA 146
AI+ + + + A
Sbjct: 138 AAITFLDKILEVCVWDAELRELRA 161
Score = 49.6 bits (119), Expect = 1e-07
Identities = 22/150 (14%), Positives = 42/150 (28%), Gaps = 19/150 (12%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTE------------YLK 62
+A+ L+ K+ NT A + + ++ E+ E
Sbjct: 169 EPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHY 228
Query: 63 KFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHP----HNHLLHQRYADILYTQGGL 118
K + E + + +G Y A E + P + +R
Sbjct: 229 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDE-- 286
Query: 119 ENIELAISHYLMAINLNEKNIRALYGLALS 148
AI + + N+ AL A +
Sbjct: 287 -KPVEAIRICSEVLQMEPDNVNALKDRAEA 315
Score = 46.1 bits (110), Expect = 2e-06
Identities = 22/148 (14%), Positives = 46/148 (31%), Gaps = 19/148 (12%)
Query: 15 RYEEALEHLETIIKIDETNTAAR------------KRKICILKAKNKIPEAIKELTEYLK 62
+E +L + +K+D+ + L + +A + +K
Sbjct: 203 DHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK 262
Query: 63 ----KFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGL 118
+ + +C + + +A+ E+ P N + A+
Sbjct: 263 TEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYL---IE 319
Query: 119 ENIELAISHYLMAINLNEKNIRALYGLA 146
E + AI Y A NE + + GL
Sbjct: 320 EMYDEAIQDYEAAQEHNENDQQIREGLE 347
Score = 43.4 bits (103), Expect = 2e-05
Identities = 22/150 (14%), Positives = 49/150 (32%), Gaps = 13/150 (8%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
Y A+ L+ I+++ + R+ + + + +AI +L K + E + ++
Sbjct: 135 DYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKI 194
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHP-----HNHLLHQRYADILYTQG----GLENIELAI 125
LY GD+ ++ + E H + + L A
Sbjct: 195 STLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDAT 254
Query: 126 SHYLMAINLN----EKNIRALYGLALSCHQ 151
S Y + E +R+ + +
Sbjct: 255 SKYESVMKTEPSVAEYTVRSKERICHCFSK 284
Score = 38.8 bits (91), Expect = 5e-04
Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 4/106 (3%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKIC----ILKAKNKIPEAIKELTEYLKKFMTDQET 70
RY +A E+++K + + R K EAI+ +E L+ +
Sbjct: 249 RYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNA 308
Query: 71 WQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQG 116
++ + YL E Y +A+ E H+ ++ + +
Sbjct: 309 LKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354
Score = 33.4 bits (77), Expect = 0.037
Identities = 16/83 (19%), Positives = 25/83 (30%), Gaps = 3/83 (3%)
Query: 69 ETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHY 128
E EL L+ G A A+ P N++ + R A + G + A+
Sbjct: 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMG---KSKAALPDL 60
Query: 129 LMAINLNEKNIRALYGLALSCHQ 151
I L A +
Sbjct: 61 TKVIALKMDFTAARLQRGHLLLK 83
Score = 26.5 bits (59), Expect = 7.2
Identities = 6/35 (17%), Positives = 15/35 (42%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNK 49
Y+EA++ E + +E + R+ + +
Sbjct: 321 MYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 51.9 bits (124), Expect = 3e-08
Identities = 28/146 (19%), Positives = 52/146 (35%), Gaps = 24/146 (16%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAK-------------------NKIPEAIK 55
++A+E L+ ++ N + C +AK I A+
Sbjct: 262 EPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVA 321
Query: 56 ELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELF---LHHPHNHLLHQRYADIL 112
L + + L L+ Y +A + ++ F L LLH RY +
Sbjct: 322 HLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQ 381
Query: 113 YTQGGLENIELAISHYLMAINLNEKN 138
Q E + AI H++ + +N+K+
Sbjct: 382 LYQMKCE--DKAIHHFIEGVKINQKS 405
Score = 48.8 bits (116), Expect = 4e-07
Identities = 27/155 (17%), Positives = 54/155 (34%), Gaps = 20/155 (12%)
Query: 13 FFRYEEALEHLETIIKIDETNTAARKRKICIL----KAKNKIPEAIKELTEYLKKFMTDQ 68
+ + A++ L I+++ N + L + + E K + E L+K
Sbjct: 188 WPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVT 247
Query: 69 ETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGG----------- 117
+ + Y + + KA+ +++ + P+N LH + +
Sbjct: 248 DVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMY 307
Query: 118 -----LENIELAISHYLMAINLNEKNIRALYGLAL 147
LE I A++H A N+ R LA
Sbjct: 308 GKRKLLELIGHAVAHLKKADEANDNLFRVCSILAS 342
Score = 48.0 bits (114), Expect = 6e-07
Identities = 18/140 (12%), Positives = 36/140 (25%), Gaps = 10/140 (7%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICI---LKAKNKIPEAIKELTEYLKKFMTDQETW 71
+ E A E ++ N L AI L + ++ +Q
Sbjct: 153 QNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLK 212
Query: 72 ----QELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISH 127
+L + + + +EE P + + A + + AI
Sbjct: 213 VLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKD---EPDKAIEL 269
Query: 128 YLMAINLNEKNIRALYGLAL 147
A+ N +
Sbjct: 270 LKKALEYIPNNAYLHCQIGC 289
Score = 36.8 bits (85), Expect = 0.003
Identities = 24/153 (15%), Positives = 48/153 (31%), Gaps = 21/153 (13%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELT---EYLKKFMTDQ--- 68
+ E K N A + K + A++ L E +++ DQ
Sbjct: 37 KVFYRTEFQNREFKATMCNLLA-----YLKHLKGQNEAALECLRKAEELIQQEHADQAEI 91
Query: 69 ---ETWQELCDLYLSEGDYAKAVFCMEELFLHHP-HNHLLHQRYADILYTQG------GL 118
TW +Y G + ++++ + ++ +G G
Sbjct: 92 RSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGG 151
Query: 119 ENIELAISHYLMAINLNEKNIRALYGLALSCHQ 151
E A + A+ KN GLA++ ++
Sbjct: 152 NQNERAKVCFEKALEKKPKNPEFTSGLAIASYR 184
Score = 28.4 bits (63), Expect = 1.9
Identities = 15/79 (18%), Positives = 24/79 (30%), Gaps = 10/79 (12%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
++A+ H +KI++ + K K + K L K D E L
Sbjct: 387 CEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKM----------RLSKNGADSEALHVL 436
Query: 75 CDLYLSEGDYAKAVFCMEE 93
L +A E
Sbjct: 437 AFLQELNEKMQQADEDSER 455
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 50.2 bits (121), Expect = 6e-08
Identities = 22/133 (16%), Positives = 41/133 (30%), Gaps = 4/133 (3%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
L L+ I+ + + + IL + +K+ E +
Sbjct: 87 NAYHKLGDLKKTIEYYQKSLTEHRTAD-ILTKLRNAEKELKKAEAEAYVNPEKAEEARLE 145
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
Y ++ D+ AV E+ P + + A L + AI+ AI
Sbjct: 146 GKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLM---SFPEAIADCNKAIEK 202
Query: 135 NEKNIRALYGLAL 147
+ +RA A
Sbjct: 203 DPNFVRAYIRKAT 215
Score = 46.0 bits (110), Expect = 2e-06
Identities = 18/133 (13%), Positives = 38/133 (28%), Gaps = 4/133 (3%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
YE A+ L ++ A K + +L + ++ + T
Sbjct: 53 EYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYY-QKSLTEHRT 111
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
D+ + K + E +P + +T+ + A+ Y I
Sbjct: 112 ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKS---DWPNAVKAYTEMIKR 168
Query: 135 NEKNIRALYGLAL 147
++ R A
Sbjct: 169 APEDARGYSNRAA 181
Score = 42.2 bits (100), Expect = 4e-05
Identities = 17/133 (12%), Positives = 38/133 (28%), Gaps = 3/133 (2%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
E+ L+ E ++ + + K+ P A+K TE +K+ D +
Sbjct: 120 NAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNR 179
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
+ +A+ + P+ + R A A+ A
Sbjct: 180 AAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK---EYASALETLDAARTK 236
Query: 135 NEKNIRALYGLAL 147
+ + +
Sbjct: 237 DAEVNNGSSAREI 249
Score = 40.6 bits (96), Expect = 1e-04
Identities = 19/137 (13%), Positives = 48/137 (35%), Gaps = 5/137 (3%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
+++EA+EH ++ + T R K + AI L + +++ + ++ +
Sbjct: 20 QFDEAIEHYNKAWELHKDITYLNNRAAA-EYEKGEYETAISTLNDAVEQGREMRADYKVI 78
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
+ G+ + +++ ++ + H+ ADIL N E + +
Sbjct: 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-ADILTKLR---NAEKELKKAEAEAYV 134
Query: 135 NEKNIRALYGLALSCHQ 151
N +
Sbjct: 135 NPEKAEEARLEGKEYFT 151
Score = 31.0 bits (71), Expect = 0.19
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 2/67 (2%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETW--Q 72
+ EA+ I+ D A RK A + A++ L K +
Sbjct: 188 SFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAR 247
Query: 73 ELCDLYL 79
E+ LY
Sbjct: 248 EIDQLYY 254
Score = 27.1 bits (61), Expect = 3.2
Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 4/80 (5%)
Query: 69 ETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHY 128
+ + + + + +A+ + + H L+ R A Y +G E AIS
Sbjct: 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNR-AAAEYEKG---EYETAISTL 61
Query: 129 LMAINLNEKNIRALYGLALS 148
A+ + ++ S
Sbjct: 62 NDAVEQGREMRADYKVISKS 81
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 48.7 bits (116), Expect = 3e-07
Identities = 24/139 (17%), Positives = 46/139 (33%), Gaps = 10/139 (7%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ------ 68
A E+L++ + + + + K+ + AI L Q
Sbjct: 456 NILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPW 515
Query: 69 -ETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISH 127
TW L Y Y A+ + + L ++ +H A + + LAI+H
Sbjct: 516 AATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKK---IPGLAITH 572
Query: 128 YLMAINLNEKNIRALYGLA 146
++ ++ I A L
Sbjct: 573 LHESLAISPNEIMASDLLK 591
Score = 48.7 bits (116), Expect = 4e-07
Identities = 18/133 (13%), Positives = 40/133 (30%), Gaps = 3/133 (2%)
Query: 16 YEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELC 75
E + I E ++ K L +++ + + T+ L+ + + +
Sbjct: 287 ELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHL 346
Query: 76 DLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLN 135
G+ K +L HP + I A ++ + ++
Sbjct: 347 ASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVN---KISEARRYFSKSSTMD 403
Query: 136 EKNIRALYGLALS 148
+ A G A S
Sbjct: 404 PQFGPAWIGFAHS 416
Score = 47.9 bits (114), Expect = 7e-07
Identities = 24/142 (16%), Positives = 43/142 (30%), Gaps = 3/142 (2%)
Query: 10 CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQE 69
F R+ + L I++ID N + L + + + + +
Sbjct: 315 LFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAV 374
Query: 70 TWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYL 129
TW + YL ++A + P +A +G + AIS Y
Sbjct: 375 TWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEG---EHDQAISAYT 431
Query: 130 MAINLNEKNIRALYGLALSCHQ 151
A L + L + Q
Sbjct: 432 TAARLFQGTHLPYLFLGMQHMQ 453
Score = 37.1 bits (86), Expect = 0.002
Identities = 11/135 (8%), Positives = 37/135 (27%), Gaps = 6/135 (4%)
Query: 16 YEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQET---WQ 72
E L + + A + + K + ++ +YL +++
Sbjct: 250 EEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLL 309
Query: 73 ELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAI 132
D + + ++ P+N ++ + L+ G +
Sbjct: 310 CKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESG---EKNKLYLISNDLV 366
Query: 133 NLNEKNIRALYGLAL 147
+ + + + +
Sbjct: 367 DRHPEKAVTWLAVGI 381
Score = 34.0 bits (78), Expect = 0.029
Identities = 21/200 (10%), Positives = 50/200 (25%), Gaps = 21/200 (10%)
Query: 5 VYIIGCFHFF--RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAI-------- 54
+ + + Y A L T + ++A R L A+
Sbjct: 120 AFWLAQVYCCTGDYARAK-CLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNP 178
Query: 55 --------KELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQ 106
+L + +Y + ++ +A C +E + +
Sbjct: 179 FRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFD 238
Query: 107 RYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKC--SAAKKK 164
+ E + +Y + +R+LY L L+ +
Sbjct: 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSI 298
Query: 165 EISKQMMWVSKHLARQYEEQ 184
++ + A +
Sbjct: 299 NGLEKSSDLLLCKADTLFVR 318
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 48.4 bits (116), Expect = 4e-07
Identities = 20/141 (14%), Positives = 40/141 (28%), Gaps = 12/141 (8%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ------ 68
+ A + I + + + A K + L+K
Sbjct: 174 NSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVD 233
Query: 69 ---ETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAI 125
L + YA+A+ + + P N + I G N E A+
Sbjct: 234 KWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMG---NFENAV 290
Query: 126 SHYLMAINLNEKNIRALYGLA 146
++ A+ L + ++ L
Sbjct: 291 DYFHTALGLRRDDTFSVTMLG 311
Score = 42.7 bits (101), Expect = 3e-05
Identities = 17/143 (11%), Positives = 43/143 (30%), Gaps = 4/143 (2%)
Query: 10 CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQE 69
++ ++ + +++ D + + I L NK E + + + ++
Sbjct: 32 HYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPV 91
Query: 70 TWQELCDLYLSEG-DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHY 128
+W + YL G A + + Y + + A++ Y
Sbjct: 92 SWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVES---EHDQAMAAY 148
Query: 129 LMAINLNEKNIRALYGLALSCHQ 151
A L + + + L
Sbjct: 149 FTAAQLMKGCHLPMLYIGLEYGL 171
Score = 32.7 bits (75), Expect = 0.063
Identities = 7/95 (7%), Positives = 23/95 (24%), Gaps = 3/95 (3%)
Query: 52 EAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADI 111
+ + E + + + L + + D+ + P + +
Sbjct: 6 PSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGT 65
Query: 112 LYTQGGLENIELAISHYLMAINLNEKNIRALYGLA 146
L ++L N + + +
Sbjct: 66 LVELN---KANELFYLSHKLVDLYPSNPVSWFAVG 97
Score = 26.5 bits (59), Expect = 6.8
Identities = 6/41 (14%), Positives = 16/41 (39%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIK 55
+E A+++ T + + +T + ++ EA
Sbjct: 285 NFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYI 325
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 45.9 bits (109), Expect = 8e-07
Identities = 11/111 (9%), Positives = 35/111 (31%), Gaps = 17/111 (15%)
Query: 55 KELTEYLKKFMTDQETWQELCDL--------------YLSEGDYAKAVFCMEELFLHHPH 100
+ ++ + + T +++ + + ++G +A L ++ +
Sbjct: 9 ESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY 68
Query: 101 NHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 151
N A I + + A Y +A L + + ++ +
Sbjct: 69 NVDYIMGLAAIYQIKE---QFQQAADLYAVAFALGKNDYTPVFHTGQCQLR 116
Score = 37.8 bits (88), Expect = 5e-04
Identities = 18/103 (17%), Positives = 25/103 (24%), Gaps = 2/103 (1%)
Query: 6 YIIGCFHFF--RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKK 63
Y + R EEA + D N I + K + +A
Sbjct: 40 YSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL 99
Query: 64 FMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQ 106
D L KA C E + H L +
Sbjct: 100 GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIK 142
Score = 34.8 bits (80), Expect = 0.007
Identities = 13/126 (10%), Positives = 29/126 (23%), Gaps = 3/126 (2%)
Query: 13 FFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQ 72
+ L+ I I + K +I EA + +
Sbjct: 15 VIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIM 74
Query: 73 ELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAI 132
L +Y + + +A F +++ A + + I
Sbjct: 75 GLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLK---APLKAKECFELVI 131
Query: 133 NLNEKN 138
+
Sbjct: 132 QHSNDE 137
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.5 bits (112), Expect = 9e-07
Identities = 24/139 (17%), Positives = 46/139 (33%), Gaps = 40/139 (28%)
Query: 6 YIIGCFHFFRYEEALEHLETIIKIDETNTAAR--------KRKIC----ILKAKNKIPEA 53
Y + + HL+ I + ++KI A I
Sbjct: 472 YF---YSHIGH-----HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT 523
Query: 54 IKELTEYLKKFMTDQE-TWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADIL 112
+++L Y K ++ D + ++ L + L FL +L+ +Y D+L
Sbjct: 524 LQQLKFY-KPYICDNDPKYERLVNAILD--------------FLPKIEENLICSKYTDLL 568
Query: 113 YTQGGLENIELAISHYLMA 131
+ L + AI + A
Sbjct: 569 --RIALMAEDEAI--FEEA 583
Score = 34.4 bits (78), Expect = 0.022
Identities = 18/121 (14%), Positives = 44/121 (36%), Gaps = 19/121 (15%)
Query: 97 HHPHNHL------LHQRYADIL--YTQGGLENIELA-ISHYLMAINLNEKNIRALYGLAL 147
HH H+H+ +Y DIL + ++N + + +I L+++ I +
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI-LSKEEIDHIIMSKD 59
Query: 148 SCHQVLTSAKCSAAKKKEISKQMM---------WVSKHLARQYEEQQGNTETLTELMSAL 198
+ L +K++E+ ++ + ++ + + + T E L
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 199 Q 199
Sbjct: 120 Y 120
Score = 31.7 bits (71), Expect = 0.15
Identities = 22/187 (11%), Positives = 51/187 (27%), Gaps = 59/187 (31%)
Query: 54 IKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHN-------HLLHQ 106
K++ + K ++ +E D + D + L +L
Sbjct: 35 CKDVQDMPKSILSKEE-----IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI 89
Query: 107 RYADILYTQGGLENIE---------------------------------LAISHYLMAIN 133
Y L + E + L + L+ +
Sbjct: 90 NY-KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148
Query: 134 LNEKNIRALYGLALSCHQVLTSAKCSAAK-KKEISKQMMWVSKHLARQYEEQQGNTETLT 192
KN+ + G+ S + C + K + ++ ++ W++ N +
Sbjct: 149 -PAKNV-LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN----------LKNCNSPE 196
Query: 193 ELMSALQ 199
++ LQ
Sbjct: 197 TVLEMLQ 203
Score = 29.8 bits (66), Expect = 0.64
Identities = 37/228 (16%), Positives = 68/228 (29%), Gaps = 65/228 (28%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKEL--TEYL---------KK 63
Y E + L N K + L+ K+ +A+ EL + + K
Sbjct: 111 MYIEQRDRLYN------DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164
Query: 64 FMT-----DQETWQELCD--LYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQG 116
++ + ++ +L+ + +E L LL+Q D +T
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML------QKLLYQ--IDPNWTSR 216
Query: 117 G---------LENIELAISHYLMAINLNE--------KNIRALYGLALSCHQVLTS---- 155
+ +I+ + L + +N +A LSC +LT+
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ 276
Query: 156 --AKCSAAKKKEISKQMMWVSKHLARQYEEQQGNTETLTELMSALQVS 201
SAA IS H + E + L+ L
Sbjct: 277 VTDFLSAATTTHIS------LDHHSMTLTP----DEVKSLLLKYLDCR 314
Score = 27.5 bits (60), Expect = 3.5
Identities = 20/210 (9%), Positives = 54/210 (25%), Gaps = 58/210 (27%)
Query: 14 FRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQ- 72
+E L + + P + + E ++ + + W+
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTT--------NPRRLSIIAESIRDGLATWDNWKH 349
Query: 73 ----------ELCDLYLSEGDYAK-----AVF-----------CM---------EELFLH 97
E L +Y K +VF + + ++
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409
Query: 98 HPHNH-LLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSA 156
H + L+ ++ + + I + + + +N AL+ + + + +
Sbjct: 410 KLHKYSLVEKQPKESTIS----------IPSIYLELKVKLENEYALHRSIVDHYNIPKTF 459
Query: 157 KCSAAKKKEISKQMMW-VSKHL--ARQYEE 183
+ + + HL E
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding
DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A
2kq5_A
Length = 499
Score = 46.7 bits (111), Expect = 2e-06
Identities = 9/133 (6%), Positives = 27/133 (20%), Gaps = 3/133 (2%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
+ L L + A +A + + L +
Sbjct: 121 TVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASN 180
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
+ + + + + P + ++ + A L
Sbjct: 181 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALE---TVQRLLPVLCQAHGL 237
Query: 135 NEKNIRALYGLAL 147
+ + A+
Sbjct: 238 TPQQVVAIASNGG 250
Score = 43.6 bits (103), Expect = 2e-05
Identities = 9/133 (6%), Positives = 26/133 (19%), Gaps = 3/133 (2%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
+ L L + A +A + + L +
Sbjct: 87 TVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASH 146
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
+ + + + P + ++ + A L
Sbjct: 147 DGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALE---TVQRLLPVLCQAHGL 203
Query: 135 NEKNIRALYGLAL 147
+ + A+
Sbjct: 204 TPQQVVAIASNGG 216
Score = 43.6 bits (103), Expect = 2e-05
Identities = 9/134 (6%), Positives = 28/134 (20%), Gaps = 3/134 (2%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
+ L L + A +A + + L +
Sbjct: 257 TVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASN 316
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
+ + + + + P + + ++ + A L
Sbjct: 317 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALE---TVQRLLPVLCQAHGL 373
Query: 135 NEKNIRALYGLALS 148
+ + A+
Sbjct: 374 TPEQVVAIASNGGG 387
Score = 43.2 bits (102), Expect = 2e-05
Identities = 9/133 (6%), Positives = 28/133 (21%), Gaps = 3/133 (2%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
+ L L + A +A + + L +
Sbjct: 155 TVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASN 214
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
+ + + + + P + ++ + A L
Sbjct: 215 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALE---TVQRLLPVLCQAHGL 271
Query: 135 NEKNIRALYGLAL 147
+ + A+ +
Sbjct: 272 TPQQVVAIASNSG 284
Score = 41.3 bits (97), Expect = 9e-05
Identities = 12/132 (9%), Positives = 30/132 (22%), Gaps = 3/132 (2%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
+ L L + A +A + + L +
Sbjct: 223 TVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASN 282
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
+ + + + + P A + LE ++ + A L
Sbjct: 283 SGGKQALETVQRLLPVLCQAHGLTPQQ---VVAIASNGGGKQALETVQRLLPVLCQAHGL 339
Query: 135 NEKNIRALYGLA 146
+ + A+
Sbjct: 340 TPQQVVAIASHD 351
Score = 39.7 bits (93), Expect = 3e-04
Identities = 13/138 (9%), Positives = 32/138 (23%), Gaps = 11/138 (7%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
+ L L + A +A + + L +
Sbjct: 325 TVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASN 384
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGG----LENIELAISHYLM 130
+ + + + + H L + + G LE ++ +
Sbjct: 385 GGGKQALETVQRLLPVLCQA-------HGLTPEQVVAIASHDGGKQALETVQRLLPVLCQ 437
Query: 131 AINLNEKNIRALYGLALS 148
A L + + A+
Sbjct: 438 AHGLTPQQVVAIASNGGG 455
Score = 38.6 bits (90), Expect = 8e-04
Identities = 16/140 (11%), Positives = 37/140 (26%), Gaps = 15/140 (10%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
+ L L + A +A + + L +
Sbjct: 359 TVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASH 418
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGG----LENIELAISHYLM 130
+ + + + + P + + + GG LE+I +S
Sbjct: 419 DGGKQALETVQRLLPVLCQAHGLTP-------QQVVAIASNGGGRPALESIVAQLSRPDP 471
Query: 131 AINLNEKNIRALYGLALSCH 150
A+ + + +AL+C
Sbjct: 472 ALAALTND----HLVALACL 487
Score = 33.6 bits (77), Expect = 0.039
Identities = 12/133 (9%), Positives = 31/133 (23%), Gaps = 5/133 (3%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
+ AL + + A +A + + L +
Sbjct: 55 AWRNALT--GAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASH 112
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
+ + + + + P A + LE ++ + A L
Sbjct: 113 DGGKQALETVQRLLPVLCQAHGLTPEQ---VVAIASHDGGKQALETVQALLPVLCQAHGL 169
Query: 135 NEKNIRALYGLAL 147
+ + A+
Sbjct: 170 TPEQVVAIASNGG 182
Score = 31.6 bits (72), Expect = 0.15
Identities = 9/108 (8%), Positives = 22/108 (20%), Gaps = 6/108 (5%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
+ L L + A +A + + L +
Sbjct: 393 TVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASN 452
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIE 122
+ + + ++H L GG ++
Sbjct: 453 GGGRPALESIVAQLSRPDPALAALTNDH------LVALACLGGRPALD 494
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 46.2 bits (110), Expect = 2e-06
Identities = 27/149 (18%), Positives = 50/149 (33%), Gaps = 15/149 (10%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEY------------LK 62
++A E L+ IK + K K ++ ++ + +
Sbjct: 148 HQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN 207
Query: 63 KFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIE 122
M D + L L+ G++ +A+ P ++ L R L E
Sbjct: 208 GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGD---RSE 264
Query: 123 LAISHYLMAINLNEKNIRALYGLALSCHQ 151
A+ Y A+ + IR+ Y L +SC
Sbjct: 265 EAVEAYTRALEIQPGFIRSRYNLGISCIN 293
Score = 45.1 bits (107), Expect = 5e-06
Identities = 30/141 (21%), Positives = 48/141 (34%), Gaps = 11/141 (7%)
Query: 16 YEEALEHLETIIKI-----DETNTAARKRKICI---LKAKNKIPEAIKELTEYLKKFMTD 67
+E A +E+ + E AR+ I + + + + K + + D
Sbjct: 5 FERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKD 64
Query: 68 QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISH 127
E L EGD + ME L P + Q EN + AI
Sbjct: 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQA---ENENEQAAIVA 121
Query: 128 YLMAINLNEKNIRALYGLALS 148
+ L N++AL LA+S
Sbjct: 122 LQRCLELQPNNLKALMALAVS 142
Score = 40.0 bits (94), Expect = 2e-04
Identities = 15/154 (9%), Positives = 42/154 (27%), Gaps = 5/154 (3%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
+ + + + + + +P I + + + D E WQ L
Sbjct: 46 TVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFL 105
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
+ A+ ++ P+N A + + A I
Sbjct: 106 GITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTS---HQQDACEALKNWIKQ 162
Query: 135 NEKNIRALY--GLALSCHQVLTSAKCSAAKKKEI 166
N K + + + ++ + ++ + +
Sbjct: 163 NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGV 196
Score = 39.7 bits (93), Expect = 3e-04
Identities = 19/134 (14%), Positives = 34/134 (25%), Gaps = 7/134 (5%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
+ +E I D + A + AI L L+ + + L
Sbjct: 80 DLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMAL 139
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLEN-------IELAISH 127
Y + A ++ +P L + + +E
Sbjct: 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKEL 199
Query: 128 YLMAINLNEKNIRA 141
YL A + N I
Sbjct: 200 YLEAAHQNGDMIDP 213
Score = 26.2 bits (58), Expect = 9.2
Identities = 9/41 (21%), Positives = 14/41 (34%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIK 55
R EEA+E ++I +R EA+
Sbjct: 262 RSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVS 302
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 46.2 bits (109), Expect = 2e-06
Identities = 27/139 (19%), Positives = 55/139 (39%), Gaps = 8/139 (5%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRK-ICILKAKNKIPEAIKELTEYLKKFMTDQETWQE 73
E+ L+ +E ++ + A K + + PEA L++ +K E W +
Sbjct: 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQ 142
Query: 74 LCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQG------GLENIELAISH 127
L ++Y +GD A C L H N + Q + +L ++ ++
Sbjct: 143 LGEVYWKKGDVTSAHTCFSGA-LTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQ 201
Query: 128 YLMAINLNEKNIRALYGLA 146
+A+ ++ + R+ Y L
Sbjct: 202 AKLAVQMDVLDGRSWYILG 220
Score = 38.5 bits (89), Expect = 0.001
Identities = 19/156 (12%), Positives = 56/156 (35%), Gaps = 13/156 (8%)
Query: 15 RYEEALEHLE----TIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQET 70
+ + ++ L + + A RK+ + ++ + ++++ E L + +
Sbjct: 49 KLQGLVDRLYCFRDSYFETHSVEDAGRKQ----QDVQEEMEKTLQQMEEVLGSAQVEAQA 104
Query: 71 WQELCDLYLSEGDYAK-AVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYL 129
DY+ A + + P + ++ + +G ++ A + +
Sbjct: 105 LMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKG---DVTSAHTCFS 161
Query: 130 MAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKE 165
A+ KN +L L++ Q+ T + ++
Sbjct: 162 GALTHC-KNKVSLQNLSMVLRQLQTDSGDEHSRHVM 196
Score = 33.8 bits (77), Expect = 0.027
Identities = 15/138 (10%), Positives = 41/138 (29%), Gaps = 9/138 (6%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
Y EALE +D ++R+ +L+ +++ ++ + K +
Sbjct: 273 SYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKPKKLQSMLGSLRP 332
Query: 75 CDLYL------SEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHY 128
L K ++ L P + ++++ E + +
Sbjct: 333 AHLGPCGDGRYQSASGQKMTLELKPLSTLQPGVNSGTVVLGKVVFSLTTEEKVPFT---F 389
Query: 129 LMAINLNEKNIRALYGLA 146
+ + +Y +
Sbjct: 390 GLVDSDGPCYAVMVYNVV 407
Score = 27.7 bits (61), Expect = 2.7
Identities = 11/83 (13%), Positives = 23/83 (27%), Gaps = 3/83 (3%)
Query: 15 RYEEALEHLETIIKIDET---NTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETW 71
++AL K+D N + + K + EA++ ++ E
Sbjct: 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQ 295
Query: 72 QELCDLYLSEGDYAKAVFCMEEL 94
Q L + +
Sbjct: 296 QREQQLLEFLSRLTSLLESKGKT 318
Score = 27.7 bits (61), Expect = 2.8
Identities = 13/128 (10%), Positives = 36/128 (28%), Gaps = 14/128 (10%)
Query: 12 HFFRYEEALEHLETIIKIDETNTAA--------RKRKICILKAKNKIPEAIKELTEYLK- 62
H +++ + +++D + + + +A+ + K
Sbjct: 191 HSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV 250
Query: 63 --KFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLEN 120
K ++ + L+ E Y +A+ + P QR +L
Sbjct: 251 DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLS---R 307
Query: 121 IELAISHY 128
+ +
Sbjct: 308 LTSLLESK 315
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 44.6 bits (106), Expect = 7e-06
Identities = 25/152 (16%), Positives = 46/152 (30%), Gaps = 18/152 (11%)
Query: 15 RYEEALEHLETIIKID---------------ETNTAARKRKICILKAKNKIPEAIKELTE 59
AL L + + + + + A N+ E L
Sbjct: 104 NANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHA 163
Query: 60 YLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLE 119
L+ D + L LY +Y A + P + L + L
Sbjct: 164 ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGN--- 220
Query: 120 NIELAISHYLMAINLNEKNIRALYGLALSCHQ 151
+ A+ Y A+++N +R +Y +A+S
Sbjct: 221 RPQEALDAYNRALDINPGYVRVMYNMAVSYSN 252
Score = 41.9 bits (99), Expect = 5e-05
Identities = 18/145 (12%), Positives = 32/145 (22%), Gaps = 12/145 (8%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
EA E + + A + K AI L D L
Sbjct: 36 NLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAAL 95
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGG------------LENIE 122
+ +E + A+ + L P L
Sbjct: 96 AVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYR 155
Query: 123 LAISHYLMAINLNEKNIRALYGLAL 147
+ A+ +N + + L +
Sbjct: 156 ECRTLLHAALEMNPNDAQLHASLGV 180
Score = 40.0 bits (94), Expect = 3e-04
Identities = 18/100 (18%), Positives = 28/100 (28%), Gaps = 3/100 (3%)
Query: 49 KIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRY 108
+ + + E E L + A+A E + P +
Sbjct: 2 HMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL 61
Query: 109 ADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALS 148
E LAI A L+ K+I LA+S
Sbjct: 62 GLTQA---ENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98
Score = 35.3 bits (82), Expect = 0.008
Identities = 11/105 (10%), Positives = 27/105 (25%), Gaps = 3/105 (2%)
Query: 42 CILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHN 101
+ + EA + +E W+ L A+ + + P +
Sbjct: 29 LSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD 88
Query: 102 HLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLA 146
+H A + N A++ + + +
Sbjct: 89 IAVHAALAVSHTNEH---NANAALASLRAWLLSQPQYEQLGSVNL 130
Score = 28.8 bits (65), Expect = 1.1
Identities = 15/137 (10%), Positives = 37/137 (27%), Gaps = 15/137 (10%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLK---KFMTDQETW 71
Y+ A +L +++ + + L N+ EA+ L ++
Sbjct: 187 NYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYV---RVM 243
Query: 72 QELCDLYLSEGDYAKAVFCMEE-LFLH----HPHNHLLHQRYADILYTQG----GLENIE 122
+ Y + Y A + +++ P + + + +
Sbjct: 244 YNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPD 303
Query: 123 LAISHYLMAINLNEKNI 139
L Y + K
Sbjct: 304 LVELTYAQNVEPFAKEF 320
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 42.4 bits (100), Expect = 1e-05
Identities = 15/97 (15%), Positives = 26/97 (26%), Gaps = 7/97 (7%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
EA E + + + A + K AI L D L
Sbjct: 32 NLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAAL 91
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADI 111
+ +E + A+ + L P +Y +
Sbjct: 92 AVSHTNEHNANAALASLRAWLLSQP-------QYEQL 121
Score = 40.9 bits (96), Expect = 4e-05
Identities = 20/84 (23%), Positives = 27/84 (32%), Gaps = 3/84 (3%)
Query: 65 MTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELA 124
E E L + A+A E + P + TQ E LA
Sbjct: 14 YMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLG---LTQAENEKDGLA 70
Query: 125 ISHYLMAINLNEKNIRALYGLALS 148
I A L+ K+I LA+S
Sbjct: 71 IIALNHARMLDPKDIAVHAALAVS 94
Score = 39.0 bits (91), Expect = 2e-04
Identities = 12/96 (12%), Positives = 27/96 (28%), Gaps = 3/96 (3%)
Query: 42 CILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHN 101
+ + EA +K +E W+ L A+ + + P +
Sbjct: 25 LSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD 84
Query: 102 HLLHQRYADILYTQGGLENIELAISHYLMAINLNEK 137
+H A + N A++ + +
Sbjct: 85 IAVHAALAVSHTNEH---NANAALASLRAWLLSQPQ 117
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 42.0 bits (99), Expect = 2e-05
Identities = 12/101 (11%), Positives = 33/101 (32%), Gaps = 3/101 (2%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
++++A + + + +D + ++ +A++ + + +
Sbjct: 33 KWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92
Query: 75 CDLYLSEGDYAKAVFCME---ELFLHHPHNHLLHQRYADIL 112
+ +L GD A L P + L R +L
Sbjct: 93 AECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAML 133
Score = 41.3 bits (97), Expect = 3e-05
Identities = 11/82 (13%), Positives = 21/82 (25%), Gaps = 3/82 (3%)
Query: 67 DQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAIS 126
E L G + A + L + ++ + G E A+
Sbjct: 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG---LYEQALQ 73
Query: 127 HYLMAINLNEKNIRALYGLALS 148
Y ++ R + A
Sbjct: 74 SYSYGALMDINEPRFPFHAAEC 95
Score = 39.3 bits (92), Expect = 1e-04
Identities = 18/116 (15%), Positives = 30/116 (25%), Gaps = 3/116 (2%)
Query: 23 LETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEG 82
L + + E K +A K D + L S G
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66
Query: 83 DYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN 138
Y +A+ L + A+ G +++ A S + A L
Sbjct: 67 LYEQALQSYSYGALMDINEPRFPFHAAECHLQLG---DLDGAESGFYSARALAAAQ 119
Score = 30.9 bits (70), Expect = 0.12
Identities = 7/53 (13%), Positives = 11/53 (20%), Gaps = 3/53 (5%)
Query: 99 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 151
Y G + A + L+ + R GL
Sbjct: 15 EDTLEQLYALGFNQYQAG---KWDDAQKIFQALCMLDHYDARYFLGLGACRQS 64
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 291
Score = 42.8 bits (100), Expect = 3e-05
Identities = 14/107 (13%), Positives = 32/107 (29%), Gaps = 2/107 (1%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRK--ICILKAKNKIPEAIKELTEYLKKFMTDQETWQ 72
R + A + L+ + DE T + + + K+ +A E K
Sbjct: 145 RLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLN 204
Query: 73 ELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLE 119
++++G + A ++E + + G
Sbjct: 205 GQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPP 251
Score = 37.4 bits (86), Expect = 0.002
Identities = 14/96 (14%), Positives = 25/96 (26%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
+ ++A + + + A+ + A L E L K ET L
Sbjct: 181 KLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINL 240
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYAD 110
L G + +H + Y
Sbjct: 241 VVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRA 276
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte
oxidase factor, SH3 domain, repeat, TPR repeat cell
cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1
PDB: 1wm5_A 1e96_B*
Length = 213
Score = 42.0 bits (99), Expect = 3e-05
Identities = 20/150 (13%), Positives = 46/150 (30%), Gaps = 16/150 (10%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
++ AL+ + + ++ C+ + EA K T + + + +
Sbjct: 21 DWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQR 77
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNH---------LLHQRYADILY----TQGGLENI 121
LY Y A+ ++E + N ++LY E
Sbjct: 78 GMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW 137
Query: 122 ELAISHYLMAINLNEKNIRALYGLALSCHQ 151
+ A +A ++ + + A+ C
Sbjct: 138 KKAEEQLALATSMKSEPRHSKIDKAMECVW 167
Score = 29.3 bits (66), Expect = 0.72
Identities = 12/79 (15%), Positives = 28/79 (35%), Gaps = 14/79 (17%)
Query: 77 LYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQG----GLENIELAISHYLMAI 132
L + D+ A+ + ++ I + G L+N+ A + +I
Sbjct: 15 LAADKKDWKGALDAFSAV----------QDPHSRICFNIGCMYTILKNMTEAEKAFTRSI 64
Query: 133 NLNEKNIRALYGLALSCHQ 151
N ++ A + + +Q
Sbjct: 65 NRDKHLAVAYFQRGMLYYQ 83
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB:
2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 41.6 bits (98), Expect = 8e-05
Identities = 32/154 (20%), Positives = 51/154 (33%), Gaps = 20/154 (12%)
Query: 15 RYEEALEHLETIIKID---------------ETNTAARKRKICILKAKNKIPEAIKELTE 59
+A E L ++ KR + L + + E +
Sbjct: 147 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLA 206
Query: 60 --YLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGG 117
L D + L L+ G+Y KAV C P+++LL + L
Sbjct: 207 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGN- 265
Query: 118 LENIELAISHYLMAINLNEKNIRALYGLALSCHQ 151
E A++ Y A+ L IR+ Y L +SC
Sbjct: 266 --QSEEAVAAYRRALELQPGYIRSRYNLGISCIN 297
Score = 40.8 bits (96), Expect = 2e-04
Identities = 29/142 (20%), Positives = 40/142 (28%), Gaps = 12/142 (8%)
Query: 16 YEEALEH----LETIIKIDETNTAARKRKICILKAKNKIPEAI-----KELTEYLKKFMT 66
+E A ++ K+ KR + + K + +
Sbjct: 3 FERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLR 62
Query: 67 DQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAIS 126
D E L EGD AV E P + Q E LAIS
Sbjct: 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQA---ENEQELLAIS 119
Query: 127 HYLMAINLNEKNIRALYGLALS 148
+ L N AL LA+S
Sbjct: 120 ALRRCLELKPDNQTALMALAVS 141
Score = 36.6 bits (85), Expect = 0.003
Identities = 13/136 (9%), Positives = 29/136 (21%), Gaps = 7/136 (5%)
Query: 17 EEALEHLETIIKIDETN----TAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQ 72
+ + + +E N + + +P A+ +++ E WQ
Sbjct: 43 DLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQ 102
Query: 73 ELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAI 132
L A+ + P N A + A +
Sbjct: 103 YLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES---LQRQACEILRDWL 159
Query: 133 NLNEKNIRALYGLALS 148
+
Sbjct: 160 RYTPAYAHLVTPAEEG 175
Score = 35.4 bits (82), Expect = 0.008
Identities = 19/139 (13%), Positives = 37/139 (26%), Gaps = 12/139 (8%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
A+ E ++ D + A + + AI L L+ +Q L
Sbjct: 79 DLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMAL 138
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPH---------NHLLHQRYADILYTQGGL---ENIE 122
+ +E +A + + + P G L
Sbjct: 139 AVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFL 198
Query: 123 LAISHYLMAINLNEKNIRA 141
+L A+ L+ +I
Sbjct: 199 EVKELFLAAVRLDPTSIDP 217
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 41.6 bits (97), Expect = 9e-05
Identities = 15/136 (11%), Positives = 36/136 (26%), Gaps = 11/136 (8%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
+ L L + + A I +A + + L +
Sbjct: 580 TVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASH 639
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGG----LENIELAISHYLM 130
+ + + + + H L + + GG LE ++ +
Sbjct: 640 DGGKQALETVQRLLPVLCQA-------HGLTPDQVVAIASNGGGKQALETVQRLLPVLCQ 692
Query: 131 AINLNEKNIRALYGLA 146
A L ++ + A+
Sbjct: 693 AHGLTQEQVVAIASNN 708
Score = 40.8 bits (95), Expect = 2e-04
Identities = 14/135 (10%), Positives = 32/135 (23%), Gaps = 10/135 (7%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
+ L L + A +A + + L +
Sbjct: 309 TVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASN 368
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGG---LENIELAISHYLMA 131
+ + + + + H L + + GG LE ++ + A
Sbjct: 369 GGGKQALETVQRLLPVLCQA-------HGLTPDQVVAIASNGGKQALETVQRLLPVLCQA 421
Query: 132 INLNEKNIRALYGLA 146
L + A+
Sbjct: 422 HGLTPDQVVAIASHD 436
Score = 40.4 bits (94), Expect = 2e-04
Identities = 9/132 (6%), Positives = 27/132 (20%), Gaps = 3/132 (2%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
+ L L + A +A + + L +
Sbjct: 546 TVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASN 605
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
+ + + + + P + + ++ + A L
Sbjct: 606 IGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALE---TVQRLLPVLCQAHGL 662
Query: 135 NEKNIRALYGLA 146
+ A+
Sbjct: 663 TPDQVVAIASNG 674
Score = 37.7 bits (87), Expect = 0.002
Identities = 14/138 (10%), Positives = 32/138 (23%), Gaps = 11/138 (7%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
+ L L + A +A + + L +
Sbjct: 207 TVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASN 266
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGG----LENIELAISHYLM 130
+ + + + + H L + + GG LE ++ +
Sbjct: 267 IGGKQALETVQRLLPVLCQA-------HGLTPDQVVAIASHGGGKQALETVQRLLPVLCQ 319
Query: 131 AINLNEKNIRALYGLALS 148
A L + A+
Sbjct: 320 AHGLTPDQVVAIASHDGG 337
Score = 36.9 bits (85), Expect = 0.003
Identities = 14/137 (10%), Positives = 33/137 (24%), Gaps = 11/137 (8%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
+ L L + A +A + + + L +
Sbjct: 444 TVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASN 503
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGG----LENIELAISHYLM 130
+ + + + + H L + + GG LE ++ +
Sbjct: 504 IGGKQALATVQRLLPVLCQA-------HGLTPDQVVAIASNGGGKQALETVQRLLPVLCQ 556
Query: 131 AINLNEKNIRALYGLAL 147
A L + A+
Sbjct: 557 AHGLTPDQVVAIASNGG 573
Score = 35.8 bits (82), Expect = 0.008
Identities = 14/133 (10%), Positives = 32/133 (24%), Gaps = 11/133 (8%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
+ L L + A +A + + L +
Sbjct: 648 TVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASN 707
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGG----LENIELAISHYLM 130
+ + + + + H L + + GG LE ++ +
Sbjct: 708 NGGKQALETVQRLLPVLCQ-------AHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQ 760
Query: 131 AINLNEKNIRALY 143
A L + A+
Sbjct: 761 AHGLTPAQVVAIA 773
Score = 34.6 bits (79), Expect = 0.017
Identities = 23/156 (14%), Positives = 40/156 (25%), Gaps = 16/156 (10%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
+ L L + A I +A + + L + D
Sbjct: 750 TVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQ-------DHGLTLAQ 802
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGG----LENIELAISHYLM 130
S +A+ ++ L H L Q + + G LE ++ +
Sbjct: 803 VVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQ 862
Query: 131 AINLNEKNIRALYGL-----ALSCHQVLTSAKCSAA 161
L + A+ AL Q L C
Sbjct: 863 DHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDH 898
Score = 31.2 bits (70), Expect = 0.27
Identities = 22/155 (14%), Positives = 51/155 (32%), Gaps = 8/155 (5%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
++ALE ++ ++ + + ++ + + +A++ + L D +
Sbjct: 811 GGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQ 870
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGG---LENIELAISHYLMA 131
S +A+ ++ L +H L + + GG LE ++ +
Sbjct: 871 VVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIASNGGKQALETVQRLLPVLCQD 930
Query: 132 INLNEKNIRALYGL-----ALSCHQVLTSAKCSAA 161
L + A+ AL Q L C
Sbjct: 931 HGLTPDQVVAIASNSGGKQALETVQRLLPVLCQDH 965
Score = 28.5 bits (63), Expect = 1.6
Identities = 17/142 (11%), Positives = 48/142 (33%), Gaps = 5/142 (3%)
Query: 6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFM 65
++ ++ALE ++ ++ + + ++ + + +A++ + L
Sbjct: 836 QVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLC 895
Query: 66 TDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGG----LENI 121
D + S G +A+ ++ L +H L + + G LE +
Sbjct: 896 QDHGLTLDQVVAIASNGGK-QALETVQRLLPVLCQDHGLTPDQVVAIASNSGGKQALETV 954
Query: 122 ELAISHYLMAINLNEKNIRALY 143
+ + L + A+
Sbjct: 955 QRLLPVLCQDHGLTPNQVVAIA 976
Score = 27.3 bits (60), Expect = 4.1
Identities = 12/133 (9%), Positives = 30/133 (22%), Gaps = 5/133 (3%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ-ETWQE 73
+ L L + A +A + + L + Q
Sbjct: 410 TVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTH-GLTPAQVVAIAS 468
Query: 74 LCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAIN 133
+ + + + + H A + + L ++ + A
Sbjct: 469 HDGGKQALETVQQLLPVLCQA---HGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHG 525
Query: 134 LNEKNIRALYGLA 146
L + A+
Sbjct: 526 LTPDQVVAIASNG 538
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown
function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Length = 275
Score = 40.4 bits (95), Expect = 2e-04
Identities = 19/133 (14%), Positives = 41/133 (30%), Gaps = 1/133 (0%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
++ A E ++++++D T A + L + A +L + + D L
Sbjct: 92 NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWL 151
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
L + D +A +++ F L +E + +L
Sbjct: 152 Y-LAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSL 210
Query: 135 NEKNIRALYGLAL 147
E + L
Sbjct: 211 AEHLSETNFYLGK 223
Score = 38.1 bits (89), Expect = 0.001
Identities = 20/137 (14%), Positives = 46/137 (33%), Gaps = 9/137 (6%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQE- 73
R + A + L + D N R + + + K +A + L ++ +K +Q W
Sbjct: 126 RDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIV 184
Query: 74 ---LCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLM 130
L ++ + + + H + + G +++ A + + +
Sbjct: 185 EFYLGNISE-QTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLG---DLDSATALFKL 240
Query: 131 AINLNEKNIRALYGLAL 147
A+ N N L
Sbjct: 241 AVANNVHNFVEHRYALL 257
Score = 32.7 bits (75), Expect = 0.057
Identities = 26/183 (14%), Positives = 50/183 (27%), Gaps = 10/183 (5%)
Query: 14 FRYEEALEHLETIIK----IDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQE 69
+ E L +E I+ D+ + + + A + ++ L E
Sbjct: 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE 78
Query: 70 TWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYL 129
+ L G++ A + + P + H LY G +LA L
Sbjct: 79 VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGG---RDKLAQDDLL 135
Query: 130 MAINLNEKNIRALYGLALS---CHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYEEQQG 186
+ + L L+ + +K +Q W +Q
Sbjct: 136 AFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQT 195
Query: 187 NTE 189
E
Sbjct: 196 LME 198
Score = 29.6 bits (67), Expect = 0.56
Identities = 20/122 (16%), Positives = 37/122 (30%), Gaps = 9/122 (7%)
Query: 32 TNTAARKRKIC--ILKAKNKIPEAIKELTEYLKKFMTDQ----ETWQELCDLYLSEGDYA 85
+NT+ RK ++ L+ + + + + L + E LY S G A
Sbjct: 1 SNTSWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRA 60
Query: 86 KAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGL 145
A + P + L G N + A + + L+ A
Sbjct: 61 LARNDFSQALAIRPDMPEVFNYLGIYLTQAG---NFDAAYEAFDSVLELDPTYNYAHLNR 117
Query: 146 AL 147
+
Sbjct: 118 GI 119
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha
subunit; ftase, farnesyltransferase, farnesyl
transferase, prenyltransferase, CAAX, RAS, lipid
modification, prenylation; HET: SUC FAR; 1.50A {Homo
sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A*
1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A*
2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A*
3ksq_A* 1o1t_A* 1o1s_A* ...
Length = 382
Score = 40.4 bits (94), Expect = 2e-04
Identities = 14/130 (10%), Positives = 46/130 (35%), Gaps = 4/130 (3%)
Query: 15 RYEEALEHLETIIKID-ETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQE 73
R E A + I+++ T R++ + + + E + +T +++ + + W
Sbjct: 112 RSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH 171
Query: 74 LCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAIN 133
L D ++ + + ++ N+ Q ++ + + + + +
Sbjct: 172 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE---FKLWDNELQYVDQLLK 228
Query: 134 LNEKNIRALY 143
+ +N
Sbjct: 229 EDVRNNSVWN 238
Score = 38.1 bits (88), Expect = 0.001
Identities = 21/148 (14%), Positives = 48/148 (32%), Gaps = 8/148 (5%)
Query: 12 HFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETW 71
+ LE + I+ D N A + + +++ ++ + + LK+ + + W
Sbjct: 178 WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVW 237
Query: 72 QELCDLYLSEGDYAKAVFCMEELFL------HHPHNHLLHQRYADILYTQGGLENIELAI 125
+ + + Y E+ PHN IL +G + L
Sbjct: 238 NQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLN 297
Query: 126 SHYLMAINLNEKNIRALYGLALSCHQVL 153
L+ + + + + L +L
Sbjct: 298 Q--LLDLQPSHSSPYLIAFLVDIYEDML 323
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 6e-04
Identities = 29/229 (12%), Positives = 69/229 (30%), Gaps = 71/229 (31%)
Query: 7 IIGCFH--FFRYEEALEH--LETIIKIDETNTAARKRKI-CILKAKNKIPEAIKELTE-- 59
+ F + + H +++ ++T K I + A+ + +
Sbjct: 87 CLTEFENCYLEGNDI--HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA 144
Query: 60 YLK-------KFMT-------DQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLL- 104
+ + + + ++EL DLY + Y V + L
Sbjct: 145 LFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT---YHVLV----GDLIKFSAETLSE 197
Query: 105 ---HQRYADILYTQGG-----LEN-------------------IEL-AISHYLMA---IN 133
A+ ++TQG LEN I + ++HY++ +
Sbjct: 198 LIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG 257
Query: 134 LNEKNIRA-LYGLALSCHQVLTSAKCSAAKKKE----ISKQMM----WV 173
+R+ L G ++T+ + E ++ + ++
Sbjct: 258 FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI 306
Score = 37.0 bits (85), Expect = 0.003
Identities = 24/154 (15%), Positives = 43/154 (27%), Gaps = 44/154 (28%)
Query: 51 PEAIKEL-TEYLKKFMTDQETWQELCDLYLSEGDYA---KAVFC-MEELFLHHPHN--HL 103
P EL ++L +++ ++ G + E +L N H
Sbjct: 54 PTTPAELVGKFLG-YVSSLVEPSKV-------GQFDQVLNLCLTEFENCYLEG--NDIHA 103
Query: 104 LHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKK 163
L + L + I +Y+ A + ++ AL A +
Sbjct: 104 LAAKLLQE--NDTTLVKTKELIKNYITARIMAKRPFDKKSNSALF----------RAVGE 151
Query: 164 KEISKQMMWVSKHLARQYEE--QQGNTET-LTEL 194
A+ QGNT+ EL
Sbjct: 152 GN------------AQLVAIFGGQGNTDDYFEEL 173
Score = 28.5 bits (63), Expect = 1.6
Identities = 23/134 (17%), Positives = 42/134 (31%), Gaps = 50/134 (37%)
Query: 70 TWQELCDLYLSEGDYAKAVFCMEELFL-------HHPHNHLLHQRYADILYTQGG----- 117
+W+ + + LF +P+ L D L G
Sbjct: 288 SWESF---------FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM 338
Query: 118 -------LENIELAISH---YL-----MAINL-N-EKNI------RALYGLALSCHQVLT 154
E ++ ++ +L + I+L N KN+ ++LYGL L+
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLR---- 394
Query: 155 SAKCSAAKKKEISK 168
K A + S+
Sbjct: 395 --KAKAPSGLDQSR 406
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP:
k.38.1.1
Length = 243
Score = 38.3 bits (90), Expect = 8e-04
Identities = 23/134 (17%), Positives = 51/134 (38%), Gaps = 3/134 (2%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
YE+A E I+ ++ + +L + N++ A+ + L+ + +
Sbjct: 38 DYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGA 97
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
++Y+ + Y +A E+ N L +L +LA+ + A+ L
Sbjct: 98 GNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLE---QPKLALPYLQRAVEL 154
Query: 135 NEKNIRALYGLALS 148
NE + A + +
Sbjct: 155 NENDTEARFQFGMC 168
Score = 36.3 bits (85), Expect = 0.004
Identities = 22/133 (16%), Positives = 44/133 (33%), Gaps = 3/133 (2%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
Y+EA + E ++ N +L + A+ L ++ D E +
Sbjct: 106 MYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQF 165
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
+EG +A+ + P + + N E A+ AI++
Sbjct: 166 GMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKE---NREKALEMLDKAIDI 222
Query: 135 NEKNIRALYGLAL 147
++ AL+ L
Sbjct: 223 QPDHMLALHAKKL 235
Score = 27.1 bits (61), Expect = 3.8
Identities = 11/134 (8%), Positives = 38/134 (28%), Gaps = 6/134 (4%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
+ + + + + + +A + T+ +++ D +
Sbjct: 7 HHHHSSGLVPRGSHMASMTGGQQMGR---GSEFGDYEKAAEAFTKAIEENKEDAIPYINF 63
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
+L S + +A+ ++ + ++ + + A + A+
Sbjct: 64 ANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKE---AKDMFEKALRA 120
Query: 135 NEKNIRALYGLALS 148
+N Y L
Sbjct: 121 GMENGDLFYMLGTV 134
Score = 27.1 bits (61), Expect = 4.0
Identities = 10/70 (14%), Positives = 19/70 (27%), Gaps = 8/70 (11%)
Query: 80 SEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQG-GLENIELAISHYLMAINLNEKN 138
S + + L P + +G + E A + AI N+++
Sbjct: 4 SHHHHHHSS----GLV---PRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKED 56
Query: 139 IRALYGLALS 148
A
Sbjct: 57 AIPYINFANL 66
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 37.2 bits (86), Expect = 0.001
Identities = 14/122 (11%), Positives = 25/122 (20%), Gaps = 3/122 (2%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
+ + +I +A D + L
Sbjct: 2 PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
+ G Y A+ + A+ L G + A S +A L
Sbjct: 62 GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXG---ELAEAESGLFLAQEL 118
Query: 135 NE 136
Sbjct: 119 IA 120
Score = 36.0 bits (83), Expect = 0.002
Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 3/100 (3%)
Query: 16 YEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELC 75
YE+A + + +D ++ +A + AI + + +
Sbjct: 37 YEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAA 96
Query: 76 DLYLSEGDYAKAVFCME---ELFLHHPHNHLLHQRYADIL 112
+ L G+ A+A + EL + P L R + +L
Sbjct: 97 ECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSML 136
Score = 33.3 bits (76), Expect = 0.019
Identities = 18/120 (15%), Positives = 29/120 (24%), Gaps = 5/120 (4%)
Query: 82 GDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRA 141
G + L A Y G E+ A + L+ + R
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYED---AHXVFQALCVLDHYDSRF 57
Query: 142 LYGLALSCHQV--LTSAKCSAAKKKEISKQMMWVSKHLARQYEEQQGNTETLTELMSALQ 199
GL + A S + + H A + E + L A +
Sbjct: 58 FLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 37.2 bits (87), Expect = 0.002
Identities = 23/131 (17%), Positives = 44/131 (33%), Gaps = 5/131 (3%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFM--TDQETWQ 72
+ A E + D N L + + EA + L E + + ++
Sbjct: 86 EPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFE 145
Query: 73 ELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAI 132
L + L A+A E+ + + + AD+LY + A +Y +
Sbjct: 146 NLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKER---EYVPARQYYDLFA 202
Query: 133 NLNEKNIRALY 143
+N R+L
Sbjct: 203 QGGGQNARSLL 213
Score = 31.1 bits (71), Expect = 0.16
Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
Query: 69 ETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHY 128
+ + +L YL G+ +A + + P + H A + T+ +LA Y
Sbjct: 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEM---EPKLADEEY 94
Query: 129 LMAINLNEKNIRAL--YGLALSCHQ 151
A+ + +N R L YG L Q
Sbjct: 95 RKALASDSRNARVLNNYGGFL-YEQ 118
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 35.5 bits (82), Expect = 0.003
Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 6/85 (7%)
Query: 69 ETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHY 128
E + L + + G+Y KA + P++ L YA +LY G E +
Sbjct: 28 ECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLG---RYEQGVELL 84
Query: 129 LMAINL--NEKNIRALYGLALSCHQ 151
L I +++ I++ Y A+ +
Sbjct: 85 LKIIAETSDDETIQS-YKQAILFYA 108
Score = 30.8 bits (70), Expect = 0.093
Identities = 15/107 (14%), Positives = 31/107 (28%), Gaps = 9/107 (8%)
Query: 15 RYEEALEHLETIIKIDETN---TAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETW 71
+A+ + E I + + +A L +K+F Q
Sbjct: 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64
Query: 72 QELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLH------QRYADIL 112
+ + G Y + V + ++ + + YAD L
Sbjct: 65 VFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILFYADKL 111
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural
protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Length = 530
Score = 36.0 bits (82), Expect = 0.006
Identities = 25/194 (12%), Positives = 52/194 (26%), Gaps = 34/194 (17%)
Query: 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTA-ARKRKICILKAKNKIPEAIKELTEYLK 62
Y +YE+ ++ I++ + + + + I + +
Sbjct: 325 FAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 384
Query: 63 KFMTDQETWQELCDL-YLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENI 121
T + + Y D + A E + Y D L
Sbjct: 385 DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN----- 439
Query: 122 ELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQY 181
+ N R L+ +VLTS K EI + + +
Sbjct: 440 -------------EDNNTRVLF------ERVLTSGSLPPEKSGEIWARFL--------AF 472
Query: 182 EEQQGNTETLTELM 195
E G+ ++ ++
Sbjct: 473 ESNIGDLASILKVE 486
Score = 26.7 bits (58), Expect = 6.1
Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 1/77 (1%)
Query: 57 LTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQG 116
+ L++ D + W L KA E L P + + Y +
Sbjct: 2 AEKKLEENPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAK 60
Query: 117 GLENIELAISHYLMAIN 133
+ +E LM +
Sbjct: 61 NYDKVEKLFQRCLMKVL 77
Score = 26.4 bits (57), Expect = 9.3
Identities = 19/164 (11%), Positives = 49/164 (29%), Gaps = 1/164 (0%)
Query: 28 KIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKA 87
+ ++ ++ + + E + + E D+ ++ +A
Sbjct: 246 RTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 305
Query: 88 VFCMEE-LFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLA 146
E + N LL+ YAD ++ E + + L +++ + Y
Sbjct: 306 ANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKF 365
Query: 147 LSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYEEQQGNTET 190
+ + S + K +E ++ V A +
Sbjct: 366 ARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSV 409
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural
protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Length = 308
Score = 35.8 bits (82), Expect = 0.006
Identities = 17/131 (12%), Positives = 36/131 (27%), Gaps = 2/131 (1%)
Query: 15 RYEEALEHLETIIKI-DETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQE 73
+YE+ ++ I D T + + + I + + T +
Sbjct: 114 KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVT 173
Query: 74 LCDL-YLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAI 132
+ Y D + A E + Y D L N + L +
Sbjct: 174 AALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 233
Query: 133 NLNEKNIRALY 143
+L + ++
Sbjct: 234 SLPPEKSGEIW 244
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat,
CLP1, PCF11, structural protein; 2.30A {Kluyveromyces
lactis} PDB: 4e85_A 4eba_A
Length = 679
Score = 35.8 bits (81), Expect = 0.006
Identities = 8/82 (9%), Positives = 29/82 (35%)
Query: 51 PEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYAD 110
+ I +L + +++ TD + +L ++S + + ++L P +
Sbjct: 49 SDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLS 108
Query: 111 ILYTQGGLENIELAISHYLMAI 132
+ + + + + +
Sbjct: 109 LEFDKMEELDAAVIEPVLARCL 130
Score = 27.3 bits (59), Expect = 4.2
Identities = 22/187 (11%), Positives = 51/187 (27%), Gaps = 10/187 (5%)
Query: 12 HFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETW 71
+ + I K + N + +++L +L+ + +
Sbjct: 257 QYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNK 316
Query: 72 QELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMA 131
EL D + A+ + + H + A+ + + + +
Sbjct: 317 LELSD----DLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDS--TVITKYLKLG 370
Query: 132 INLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYEEQQGNTETL 191
+ LA S + + I + + LA E+ N +
Sbjct: 371 QQCIPNSAV----LAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAI 426
Query: 192 TELMSAL 198
+L S L
Sbjct: 427 NQLKSKL 433
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller,
endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP:
i.23.1.1 PDB: 1xi5_A 3iyv_A
Length = 1630
Score = 35.0 bits (80), Expect = 0.014
Identities = 30/127 (23%), Positives = 52/127 (40%), Gaps = 21/127 (16%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMT-------- 66
+EE + LE + + E ++ IL +K K P+ ++ E+L+ F +
Sbjct: 1295 YFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQ---KMREHLELFWSRVNIPKVL 1349
Query: 67 ----DQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIE 122
W EL LY +Y A+ M ++HP + ++ DI+ +E
Sbjct: 1350 RAAEQAHLWAELVFLYDKYEEYDNAIITM----MNHPTDAWKEGQFKDIITKVANVELYY 1405
Query: 123 LAISHYL 129
AI YL
Sbjct: 1406 RAIQFYL 1412
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 34.2 bits (79), Expect = 0.015
Identities = 21/156 (13%), Positives = 43/156 (27%), Gaps = 8/156 (5%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAK-NKIPEAIKELTEYLKKFM--TDQETW 71
++A E + I + L + N+ E++ + L T
Sbjct: 57 VNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIAN 116
Query: 72 QELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMA 131
+G + A ++ P + A G + A ++
Sbjct: 117 LNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAG---QLGDADYYFKKY 173
Query: 132 INLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEIS 167
+ E L + L +A+ AA + E
Sbjct: 174 QSRVEVLQADDLLLGWKIAKALGNAQ--AAYEYEAQ 207
Score = 32.6 bits (75), Expect = 0.053
Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 6/85 (7%)
Query: 69 ETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHY 128
+L Y+ DY +A +E+ P N L A+I + A +
Sbjct: 9 NIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLK---VNDKAQESF 65
Query: 129 LMAINLNEKNIRAL--YGLALSCHQ 151
A+++ + YG L C +
Sbjct: 66 RQALSIKPDSAEINNNYGWFL-CGR 89
Score = 28.4 bits (64), Expect = 1.5
Identities = 21/144 (14%), Positives = 38/144 (26%), Gaps = 24/144 (16%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETW--- 71
Y +A +E +K D N A + I + +A + + L E
Sbjct: 23 DYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82
Query: 72 -----QELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQG----GLENIE 122
L S + KA+ + +G
Sbjct: 83 GWFLCGRLNRPAESMAYFDKAL------------ADPTYPTPYIANLNKGICSAKQGQFG 130
Query: 123 LAISHYLMAINLNEKNIRALYGLA 146
LA ++ ++ + A LA
Sbjct: 131 LAEAYLKRSLAAQPQFPPAFKELA 154
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain,
DNA-binding, transcription regulation, transmembrane;
1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Length = 372
Score = 34.3 bits (78), Expect = 0.020
Identities = 22/131 (16%), Positives = 40/131 (30%), Gaps = 14/131 (10%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKI----PEAIKELTEYLKKFMTDQET 70
A E L I++ T AR K + ++ + + L + +T E
Sbjct: 214 SLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPEL 273
Query: 71 ------WQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELA 124
+Q L +G ++ + + L + + +G A
Sbjct: 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKG---MNREA 329
Query: 125 ISHYLMAINLN 135
YL A NL
Sbjct: 330 ADAYLTAFNLR 340
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural
genomics, PSI, protein struct initiative; 2.40A {Vibrio
parahaemolyticus} SCOP: e.61.1.1
Length = 273
Score = 33.8 bits (77), Expect = 0.024
Identities = 22/128 (17%), Positives = 43/128 (33%), Gaps = 9/128 (7%)
Query: 69 ETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHY 128
W+ LSEG +A+ + E P + L + ++L G + E A
Sbjct: 2 TQWKNA----LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDG---DFERADEQL 54
Query: 129 LMAINLNEKNIRA--LYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYEEQQG 186
+ +I L + + + Q AA K + + ++
Sbjct: 55 MQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQ 114
Query: 187 NTETLTEL 194
+ E ++EL
Sbjct: 115 DYEQVSEL 122
Score = 30.3 bits (68), Expect = 0.33
Identities = 10/64 (15%), Positives = 25/64 (39%)
Query: 49 KIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRY 108
++ +A++ L E +K D +L +GD+ +A + + P +
Sbjct: 12 QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL 71
Query: 109 ADIL 112
++
Sbjct: 72 RHLV 75
Score = 28.8 bits (64), Expect = 1.2
Identities = 19/119 (15%), Positives = 34/119 (28%), Gaps = 6/119 (5%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
+ ++ALE L IK + + R I +L A ++L + +K F +L
Sbjct: 12 QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL 71
Query: 75 CDLYLSEGDYAKAVF--CMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMA 131
L + K L ++ + E L
Sbjct: 72 RHLVKAA-QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQ---DYEQVSELALQI 126
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus} PDB: 3lvh_A
Length = 624
Score = 33.8 bits (77), Expect = 0.029
Identities = 30/127 (23%), Positives = 52/127 (40%), Gaps = 21/127 (16%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMT-------- 66
+EE + LE + + E ++ IL +K K P+ ++ E+L+ F +
Sbjct: 244 YFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQ---KMREHLELFWSRVNIPKVL 298
Query: 67 ----DQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIE 122
W EL LY +Y A+ M ++HP + ++ DI+ +E
Sbjct: 299 RAAEQAHLWAELVFLYDKYEEYDNAIITM----MNHPTDAWKEGQFKDIITKVANVELYY 354
Query: 123 LAISHYL 129
AI YL
Sbjct: 355 RAIQFYL 361
>2kat_A Uncharacterized protein; NESG, structure, structural genomics,
PSI-2, protein structure initiative; NMR {Bordetella
parapertussis}
Length = 115
Score = 32.3 bits (74), Expect = 0.035
Identities = 10/87 (11%), Positives = 22/87 (25%), Gaps = 3/87 (3%)
Query: 52 EAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADI 111
+ L L + + L Y + A+ + P + +
Sbjct: 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKT 62
Query: 112 LYTQGGLENIELAISHYLMAINLNEKN 138
L QG + A + + +
Sbjct: 63 LQGQG---DRAGARQAWESGLAAAQSR 86
Score = 30.8 bits (70), Expect = 0.097
Identities = 15/72 (20%), Positives = 22/72 (30%)
Query: 17 EEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCD 76
+ E LE ++ N R + A+ L L T W+ L
Sbjct: 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61
Query: 77 LYLSEGDYAKAV 88
+GD A A
Sbjct: 62 TLQGQGDRAGAR 73
Score = 29.2 bits (66), Expect = 0.35
Identities = 11/48 (22%), Positives = 19/48 (39%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLK 62
+++ AL HL + D T + A K L+ + A + L
Sbjct: 34 QFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT
protein-protein interactions, protein binding; 2.00A
{Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A
3asg_A 3ash_A 3as8_A 3asf_A
Length = 186
Score = 31.3 bits (72), Expect = 0.14
Identities = 21/128 (16%), Positives = 38/128 (29%), Gaps = 3/128 (2%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
+ E LE + N K A+ L + + + L
Sbjct: 57 AVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRL 116
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
+ G + +A+ + P+ +H+ A G E A+ H+ A L
Sbjct: 117 GVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMG---RHEEALPHFKKANEL 173
Query: 135 NEKNIRAL 142
+E L
Sbjct: 174 DEGASVEL 181
Score = 30.5 bits (70), Expect = 0.21
Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 5/135 (3%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
RY +A+ LE + D + + + L L + + L
Sbjct: 23 RYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVL 82
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
Y+ Y AV + ++ +P N + R L G + AI + +A+ L
Sbjct: 83 GLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLG---RFDEAIDSFKIALGL 139
Query: 135 NEKNIRALY--GLAL 147
+ +
Sbjct: 140 RPNEGKVHRAIAFSY 154
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus
thuringiensis serovar ISRAELE35646}
Length = 293
Score = 31.7 bits (71), Expect = 0.15
Identities = 22/149 (14%), Positives = 48/149 (32%), Gaps = 16/149 (10%)
Query: 6 YIIGCFHFFRYEEALEHLETIIKIDETNTAAR------KRKICILKAKNKIPEAIKELTE 59
+I RY+E + +K +E + + + K I EL +
Sbjct: 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKK 140
Query: 60 YLKKFMTDQETWQE------LCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILY 113
L + +T + +Q + ++Y G K + E++ H + + Y
Sbjct: 141 LLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200
Query: 114 TQGG----LENIELAISHYLMAINLNEKN 138
E ++ AI ++ +
Sbjct: 201 NHAKALYLDSRYEESLYQVNKAIEISCRI 229
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural
genomics, PSI-2, protein structure initiative; 2.80A
{Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 29.9 bits (68), Expect = 0.16
Identities = 11/75 (14%), Positives = 23/75 (30%), Gaps = 2/75 (2%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTE--YLKKFMTDQETWQ 72
AL E +++ D + + ++ +AI + + + Q+
Sbjct: 22 NASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS 81
Query: 73 ELCDLYLSEGDYAKA 87
EL D L
Sbjct: 82 ELQDAKLKAEGLEHH 96
Score = 27.6 bits (62), Expect = 1.0
Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 3/64 (4%)
Query: 78 YLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK 137
+L + ++A+ EEL P + + + AI Y I + +
Sbjct: 17 HLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLD---RTDDAIDTYAQGIEVARE 73
Query: 138 NIRA 141
Sbjct: 74 EGTQ 77
Score = 24.9 bits (55), Expect = 8.6
Identities = 6/51 (11%), Positives = 14/51 (27%), Gaps = 3/51 (5%)
Query: 96 LHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLA 146
+ P + A N A++ + + + + Y L
Sbjct: 1 MEDPEDPFTRYALAQEHLKHD---NASRALALFEELVETDPDYVGTYYHLG 48
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP:
a.118.8.1 PDB: 2bug_A
Length = 166
Score = 30.4 bits (69), Expect = 0.20
Identities = 14/81 (17%), Positives = 31/81 (38%), Gaps = 2/81 (2%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
Y AL I++D+ R+ A K A+++ +K D++ +
Sbjct: 62 CYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKY 121
Query: 75 --CDLYLSEGDYAKAVFCMEE 93
C+ + + + +A+ E
Sbjct: 122 QECNKIVKQKAFERAIAGDEH 142
Score = 26.6 bits (59), Expect = 5.0
Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 7/73 (9%)
Query: 78 YLSEGDYAKAVFCMEELFLHHPHNHLLHQ-RYADILYTQGGLENIELAISHYLMAINLNE 136
Y DY A+ + +P N + + R Y + E A+ AI L++
Sbjct: 23 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSL--AYLR--TECYGYALGDATRAIELDK 78
Query: 137 KNIRALY--GLAL 147
K I+ Y +
Sbjct: 79 KYIKGYYRRAASN 91
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein,
tetratricopeptide repeat protein, HOST-virus
interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Length = 131
Score = 30.3 bits (69), Expect = 0.20
Identities = 15/60 (25%), Positives = 24/60 (40%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
Y A++ E I ID + A R L + NK EA+ + L+ ++ L
Sbjct: 61 NYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNL 120
Score = 25.6 bits (57), Expect = 6.8
Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 5/73 (6%)
Query: 78 YLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK 137
+ ++ AV + +P N + + + L N A+ AI ++
Sbjct: 22 QMKVENFEAAVHFYGKAIELNPANAVY---FCNRAAAYSKLGNYAGAVQDCERAICIDPA 78
Query: 138 NIRALY--GLALS 148
+A GLALS
Sbjct: 79 YSKAYGRMGLALS 91
Score = 25.6 bits (57), Expect = 6.9
Identities = 8/39 (20%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEA 53
++ EA+ + + +++D N + + A+ K+ EA
Sbjct: 95 KHVEAVAYYKKALELDPDNETYKSN---LKIAELKLREA 130
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 31.0 bits (70), Expect = 0.20
Identities = 10/65 (15%), Positives = 19/65 (29%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
+ E+AL +++D + A EAI L + + +
Sbjct: 53 QPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDD 112
Query: 75 CDLYL 79
L
Sbjct: 113 IPSAL 117
Score = 29.1 bits (65), Expect = 0.80
Identities = 16/117 (13%), Positives = 40/117 (34%), Gaps = 12/117 (10%)
Query: 78 YLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK 137
Y +A C +P + + A Y + ++ E A++ A+ L+ +
Sbjct: 14 LFVGRKYPEAAACYGRAITRNPLVAVYYTNRALC-YLK--MQQPEQALADCRRALELDGQ 70
Query: 138 NIRALYGLALS---------CHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYEEQQ 185
+++A + L L A A +++ + + +A++
Sbjct: 71 SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNS 127
Score = 26.4 bits (58), Expect = 6.0
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 15 RYEEALEHLETIIKIDETN--TAARKRKICILKAKNKIPEAIKE 56
Y+EA+ +L+ + + + AK K +I+E
Sbjct: 87 SYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEE 130
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase,
ligase-chaperone complex; 1.54A {Mus musculus} PDB:
3q47_B 3q4a_B*
Length = 137
Score = 30.4 bits (69), Expect = 0.21
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKI--CILKAKNKIPEAIKE 56
Y+EA+ +L+ + + I + AK K +I+E
Sbjct: 92 SYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEE 135
Score = 28.4 bits (64), Expect = 0.75
Identities = 9/48 (18%), Positives = 15/48 (31%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLK 62
+ E+AL +++D + A EAI L
Sbjct: 58 QPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYS 105
Score = 28.0 bits (63), Expect = 1.2
Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 78 YLSEGDYAKAVFCMEELFLHHPHNHLLHQ-RYADILYTQGGLENIELAISHYLMAINLNE 136
Y +A C +P + + R Y + ++ E A++ A+ L+
Sbjct: 19 LFVGRKYPEAAACYGRAITRNPLVAVYYTNRAL--CYLK--MQQPEQALADCRRALELDG 74
Query: 137 KNIRALYGLAL 147
++++A + L
Sbjct: 75 QSVKAHFFLGQ 85
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 30.0 bits (68), Expect = 0.27
Identities = 8/50 (16%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKF 64
+ +EA E L+ +++ + R++ I+ + E + K
Sbjct: 112 KLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRA--EKKADSRVTYSKM 159
Score = 26.6 bits (59), Expect = 4.0
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLK 62
EA E ++K +ETN A R+ A K+ EA ++L L+
Sbjct: 78 DLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 30.6 bits (69), Expect = 0.34
Identities = 7/46 (15%), Positives = 19/46 (41%)
Query: 154 TSAKCSAAKKKEISKQMMWVSKHLARQYEEQQGNTETLTELMSALQ 199
+S + ++ +W K+ ++ GN ++ +L + L
Sbjct: 11 SSGLEVLFQGPHMASDKLWTVKYAPTNLQQVCGNKGSVMKLKNWLA 56
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
repeat, protein transport; 2.90A {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 292
Score = 30.0 bits (67), Expect = 0.40
Identities = 21/115 (18%), Positives = 38/115 (33%), Gaps = 13/115 (11%)
Query: 15 RYEEALEHLETIIKI-----DETNTAARKRKICIL--KAKNKIPEAIKELTEYLKKFMTD 67
A++ LE I+I A K ++ + + +AI + + D
Sbjct: 92 NSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD 151
Query: 68 Q------ETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQG 116
Q + + + DL +G Y +A +L N L D +G
Sbjct: 152 QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.40
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 52 EAIKELTEYLKKFMTD 67
+A+K+L LK + D
Sbjct: 20 QALKKLQASLKLYADD 35
Score = 27.2 bits (59), Expect = 3.0
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 16/44 (36%)
Query: 17 EEALEHLETIIKIDETNTAARKRKICILKAKNKIPE-AIKELTE 59
++AL+ L+ +K+ ++A P AIK E
Sbjct: 19 KQALKKLQASLKLYADDSA---------------PALAIKATME 47
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio
parahaemolyticus RIMD 22 structural genomics, PSI-2,
protein structure initiative; HET: MES; 2.14A {Vibrio
parahaemolyticus}
Length = 176
Score = 29.6 bits (66), Expect = 0.44
Identities = 20/122 (16%), Positives = 41/122 (33%), Gaps = 5/122 (4%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
+ +AL ++T+ ++ + K L + A +EL + D +
Sbjct: 21 EHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELA-QELLATIPLEYQDNSYKSLI 79
Query: 75 CDLYLSE-GDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAIN 133
L L + + + +E+ +P N L A G E A+ +
Sbjct: 80 AKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVG---RDEEALELLWNILK 136
Query: 134 LN 135
+N
Sbjct: 137 VN 138
Score = 28.0 bits (62), Expect = 1.5
Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 3/125 (2%)
Query: 76 DLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLN 135
L +G++A+A+ ++ L + AD L E + ++ + N
Sbjct: 14 SELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDN 73
Query: 136 E-KNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYEEQQGNTETLTEL 194
K++ A L + + + LA QY + + E L L
Sbjct: 74 SYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELAC--ELAVQYNQVGRDEEALELL 131
Query: 195 MSALQ 199
+ L+
Sbjct: 132 WNILK 136
Score = 26.1 bits (57), Expect = 7.8
Identities = 14/107 (13%), Positives = 31/107 (28%), Gaps = 3/107 (2%)
Query: 46 AKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLH 105
+ + +A+ + + + + D L + A + + L + N
Sbjct: 18 QQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKS 77
Query: 106 QRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQV 152
L+ Q + + N N LA+ +QV
Sbjct: 78 LIAKLELHQQAAESP---ELKRLEQELAANPDNFELACELAVQYNQV 121
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and
HSP90, C-terminal PA HSP70, peptide binding protein;
1.60A {Saccharomyces cerevisiae}
Length = 126
Score = 28.8 bits (65), Expect = 0.54
Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 3/74 (4%)
Query: 78 YLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK 137
Y ++ D+ AV E+ P + + A + L + AI+ AI +
Sbjct: 14 YFTKSDWPNAVKAYTEMIKRAPEDARGYSNRA-AALAK--LMSFPEAIADCNKAIEKDPN 70
Query: 138 NIRALYGLALSCHQ 151
+RA A +
Sbjct: 71 FVRAYIRKATAQIA 84
Score = 28.0 bits (63), Expect = 1.1
Identities = 10/48 (20%), Positives = 16/48 (33%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLK 62
+ EA+ I+ D A RK A + A++ L
Sbjct: 53 SFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 100
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles,
endocytosis, SELF- assembly, alpha-alpha superhelix;
2.60A {Bos taurus} SCOP: a.118.1.3
Length = 449
Score = 29.9 bits (67), Expect = 0.64
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 71 WQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYL 129
W EL LY +Y A+ M ++HP + ++ DI+ +E AI YL
Sbjct: 285 WAELVFLYDKYEEYDNAIITM----MNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL 339
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
1.60A {Caenorhabditis elegans}
Length = 126
Score = 28.3 bits (64), Expect = 0.76
Identities = 11/48 (22%), Positives = 22/48 (45%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLK 62
++ AL+ +T I++D RK L A + +A + + L+
Sbjct: 62 EFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQ 109
Score = 27.2 bits (61), Expect = 2.1
Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 7/73 (9%)
Query: 78 YLSEGDYAKAVFCMEELFLHHPHNHLLHQ-RYADILYTQGGLENIELAISHYLMAINLNE 136
Y +GDY A+ E P N +L+ R A T+ L + A+ I L+
Sbjct: 23 YFKKGDYPTAMRHYNEAVKRDPENAILYSNRAA--CLTK--LMEFQRALDDCDTCIRLDS 78
Query: 137 KNIRALY--GLAL 147
K I+ L
Sbjct: 79 KFIKGYIRKAACL 91
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A
{Thermus thermophilus}
Length = 217
Score = 29.0 bits (66), Expect = 0.78
Identities = 19/132 (14%), Positives = 42/132 (31%), Gaps = 14/132 (10%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTE-----------YLKK 63
RY+ AL E +K + + A + A++ Y+
Sbjct: 20 RYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVL 79
Query: 64 FMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIEL 123
+++ D +G +A+ +++ +P LH + + G +
Sbjct: 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLG---ERDK 136
Query: 124 AISHYLMAINLN 135
A + A+ L
Sbjct: 137 AEASLKQALALE 148
Score = 28.7 bits (65), Expect = 0.94
Identities = 11/43 (25%), Positives = 16/43 (37%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKEL 57
R +EAL ++ + R R L K K EA +
Sbjct: 166 RLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAA 208
Score = 26.7 bits (60), Expect = 4.0
Identities = 16/134 (11%), Positives = 40/134 (29%), Gaps = 40/134 (29%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLK-KFMTDQETWQE 73
E+AL L+ +++ ++ + + +A L + L +
Sbjct: 99 YLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE---------- 148
Query: 74 LCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAIN 133
D + + L A++ + G ++ A++ Y A+
Sbjct: 149 ---------DTPEI------------RSAL-----AELYLSMG---RLDEALAQYAKALE 179
Query: 134 LNEKNIRALYGLAL 147
K++ A
Sbjct: 180 QAPKDLDLRVRYAS 193
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 29.3 bits (65), Expect = 0.80
Identities = 9/48 (18%), Positives = 19/48 (39%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLK 62
Y +A+E + + +D N R+ N+ A + + L+
Sbjct: 332 EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379
Score = 28.9 bits (64), Expect = 1.3
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 16 YEEALEHLETIIKIDETNTAARKRKICILKAKNK 49
+E A E +++++ N AAR +I + + K K
Sbjct: 367 FESAKGDFEKVLEVNPQNKAARL-QISMCQKKAK 399
Score = 27.0 bits (59), Expect = 4.6
Identities = 16/77 (20%), Positives = 23/77 (29%), Gaps = 9/77 (11%)
Query: 118 LENIELAISHYLMAINLNEKNIRALY--GLALSCHQVLTSAK--CSAAKK-----KEISK 168
L A+ A+ L+ N + LY G A SAK + K
Sbjct: 330 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARL 389
Query: 169 QMMWVSKHLARQYEEQQ 185
Q+ K E +
Sbjct: 390 QISMCQKKAKEHNERDR 406
>2dba_A Smooth muscle cell associated protein-1, isoform 2;
tetratricopeptide repeat, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 148
Score = 28.5 bits (64), Expect = 0.83
Identities = 9/48 (18%), Positives = 21/48 (43%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLK 62
Y++A I+ D + A R+ L+ ++ +A+ +L +
Sbjct: 80 DYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVS 127
Score = 26.2 bits (58), Expect = 6.1
Identities = 4/24 (16%), Positives = 13/24 (54%)
Query: 15 RYEEALEHLETIIKIDETNTAARK 38
R ++A+ L+ + ++ N ++
Sbjct: 114 RLDQAVLDLQRCVSLEPKNKVFQE 137
Score = 25.8 bits (57), Expect = 8.4
Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 10/71 (14%)
Query: 78 YLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYT-----QGGLENIELAISHYLMAI 132
GDY A+ + +L+ LE+ + A + AI
Sbjct: 38 LFKCGDYGGALAAYTQALGLDATPQDQA-----VLHRNRAACHLKLEDYDKAETEASKAI 92
Query: 133 NLNEKNIRALY 143
+ +++ALY
Sbjct: 93 EKDGGDVKALY 103
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium
(SGC), motor PR transport protein; 2.80A {Homo sapiens}
Length = 311
Score = 29.0 bits (66), Expect = 0.84
Identities = 20/146 (13%), Positives = 42/146 (28%), Gaps = 26/146 (17%)
Query: 15 RYEEALEHLETIIKIDET-------NTAARKRKI-CILKAKNKIPEAI----KELTEYLK 62
+YEE + + ++I +T N A K + + K +A + LT +
Sbjct: 168 KYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE 227
Query: 63 KFMTDQ-----ETWQELCDLYLSEGDYAKAV------FCMEELFLHHPHNHLLHQRYADI 111
+ W + +G + + P + +
Sbjct: 228 REFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGAL 287
Query: 112 LYTQGGLENIELAISHYLMAINLNEK 137
QG E A + A+ ++
Sbjct: 288 YRRQG---KFEAAETLEEAAMRSRKQ 310
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 28.6 bits (64), Expect = 1.0
Identities = 11/48 (22%), Positives = 21/48 (43%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLK 62
Y +A++H ++KID+ N A + + EA + L +
Sbjct: 103 DYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150
Score = 27.4 bits (61), Expect = 2.6
Identities = 12/50 (24%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKF 64
EEA E+L ++ N R NK+ EA K+
Sbjct: 137 FLEEAKENLYKAASLNPNNLDIRNS---YELCVNKLKEARKKDKLTFGGM 183
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1,
SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Length = 164
Score = 28.5 bits (64), Expect = 1.1
Identities = 8/48 (16%), Positives = 17/48 (35%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLK 62
++E+A E E +D + A R A + + ++
Sbjct: 60 QHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIE 107
Score = 27.4 bits (61), Expect = 2.7
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIK 55
Y+ A E E I+ + + ++ + K KI EA +
Sbjct: 94 DYKGAKEAYEKGIEAEGNGGSDAMKR-GLETTKRKIEEANR 133
Score = 25.8 bits (57), Expect = 8.0
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 7/73 (9%)
Query: 78 YLSEGDYAKAVFCMEELFLHHPHNHLLHQ-RYADILYTQGGLENIELAISHYLMAINLNE 136
++ +Y+KA+ + P N + R A Y+ E A +A ++
Sbjct: 21 AMARKEYSKAIDLYTQALSIAPANPIYLSNRAA--AYSA--SGQHEKAAEDAELATVVDP 76
Query: 137 KNIRALY--GLAL 147
K +A GLA
Sbjct: 77 KYSKAWSRLGLAR 89
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 28.8 bits (64), Expect = 1.1
Identities = 15/63 (23%), Positives = 27/63 (42%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
RY+EA+ H ++ +E N A R+ ++ A + + K D+ +EL
Sbjct: 245 RYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRREL 304
Query: 75 CDL 77
L
Sbjct: 305 RAL 307
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A
{Encephalitozoon cuniculi} PDB: 2uy1_B
Length = 493
Score = 29.1 bits (64), Expect = 1.2
Identities = 14/119 (11%), Positives = 24/119 (20%), Gaps = 4/119 (3%)
Query: 4 IVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKK 63
I ++ E + + A + L K
Sbjct: 290 INHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK 349
Query: 64 FMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIE 122
+E L GD A LF + + + G +E
Sbjct: 350 HPDSTLLKEEFFLFLLRIGDEENA----RALFKRLEKTSRMWDSMIEYEFMVGSMELFR 404
Score = 27.5 bits (60), Expect = 2.9
Identities = 17/122 (13%), Positives = 31/122 (25%), Gaps = 6/122 (4%)
Query: 6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICI------LKAKNKIPEAIKELTE 59
Y + Y + +++ + + K + K E
Sbjct: 252 YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIE 311
Query: 60 YLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLE 119
+ + Y + G A L HP + LL + + L G E
Sbjct: 312 LGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEE 371
Query: 120 NI 121
N
Sbjct: 372 NA 373
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain,
transcription, RNA binding protein; 2.27A {Pseudomonas
aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5
c.55.3.13 PDB: 3bzk_A 2oce_A
Length = 785
Score = 28.7 bits (65), Expect = 1.3
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 10/45 (22%)
Query: 38 KRKICILKAKNKIPEAIKE---LTEYLKKFMTDQETWQELCDLYL 79
+R+ IL + I+E LT L + + +T L DLYL
Sbjct: 72 ERRGAILAS-------IEEQGKLTPELARDIKLADTKTRLEDLYL 109
>2l6j_A TPR repeat-containing protein associated with HSP;
tetratricopeptide repeat (TPR), HSP90 CO-factor, protein
BIN; NMR {Saccharomyces cerevisiae}
Length = 111
Score = 27.3 bits (61), Expect = 1.5
Identities = 7/56 (12%), Positives = 18/56 (32%), Gaps = 6/56 (10%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICIL------KAKNKIPEAIKELTEYLKKF 64
Y +A++ + ++ T R A + + E+ E + +
Sbjct: 53 EYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELPEGY 108
Score = 26.1 bits (58), Expect = 4.8
Identities = 15/93 (16%), Positives = 25/93 (26%), Gaps = 5/93 (5%)
Query: 78 YLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK 137
+G Y +AV C ++L P N + + A L L AI +
Sbjct: 14 LFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALI---KLGEYTQAIQMCQQGLRYTST 70
Query: 138 NIRALY--GLALSCHQVLTSAKCSAAKKKEISK 168
L + E+ +
Sbjct: 71 AEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 28.3 bits (63), Expect = 1.5
Identities = 10/63 (15%), Positives = 23/63 (36%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
+ A+E +++D N R+ A N A + + L+ + ++ +L
Sbjct: 211 AFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQL 270
Query: 75 CDL 77
Sbjct: 271 AVC 273
Score = 26.4 bits (58), Expect = 7.5
Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 9/77 (11%)
Query: 118 LENIELAISHYLMAINLNEKNIRALY--GLALSCHQVLTSAK--CSAAKK-----KEISK 168
L+ AI A+ L+ N + L G A A+ + K
Sbjct: 209 LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKT 268
Query: 169 QMMWVSKHLARQYEEQQ 185
Q+ + + RQ ++
Sbjct: 269 QLAVCQQRIRRQLAREK 285
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A
{Xanthomonas campestris}
Length = 129
Score = 27.4 bits (61), Expect = 1.8
Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 9/77 (11%)
Query: 78 YLSEGDYAKAVFCMEELFLHHPHNHLL---HQRYADILYTQGGLENIELAISHYLMAINL 134
L G Y A +P+ + Y N +LA + + ++
Sbjct: 12 ALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATR---NFQLAEAQFRDLVSR 68
Query: 135 NEKNIR---ALYGLALS 148
+ + L L LS
Sbjct: 69 YPTHDKAAGGLLKLGLS 85
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, HSP70, protein binding, chaperone; 1.60A {Homo
sapiens} SCOP: a.118.8.1
Length = 118
Score = 27.1 bits (61), Expect = 2.1
Identities = 12/48 (25%), Positives = 19/48 (39%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLK 62
Y++A E + + RK L+ N+ EA + E LK
Sbjct: 53 DYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLK 100
Score = 26.0 bits (58), Expect = 4.5
Identities = 16/78 (20%), Positives = 25/78 (32%), Gaps = 15/78 (19%)
Query: 78 YLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYT-----QGGLENIELAISHYLMAI 132
LS G+ A+ C E PHNH +LY+ + + A +
Sbjct: 14 ALSVGNIDDALQCYSEAIKLDPHNH--------VLYSNRSAAYAKKGDYQKAYEDGCKTV 65
Query: 133 NLNEKNIRALY--GLALS 148
+L + AL
Sbjct: 66 DLKPDWGKGYSRKAAALE 83
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, chaperone; NMR {Homo sapiens}
Length = 133
Score = 27.2 bits (61), Expect = 2.2
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 7/73 (9%)
Query: 78 YLSEGDYAKAVFCMEELFLHHPHNHLLHQ-RYADILYTQGGLENIELAISHYLMAINLNE 136
+GDY +A+ E +P + L+ R A YT+ L +LA+ I L
Sbjct: 26 CFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAA--CYTK--LLEFQLALKDCEECIQLEP 81
Query: 137 KNIRALY--GLAL 147
I+ AL
Sbjct: 82 TFIKGYTRKAAAL 94
Score = 26.0 bits (58), Expect = 5.4
Identities = 11/48 (22%), Positives = 21/48 (43%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLK 62
++ AL+ E I+++ T RK L+A +A+ + L
Sbjct: 65 EFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALD 112
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 27.7 bits (62), Expect = 2.6
Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 3/71 (4%)
Query: 78 YLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK 137
Y DY A+ + +P N + Y + E A+ AI L++K
Sbjct: 16 YFKAKDYENAIKFYSQAIELNPSNAIY---YGNRSLAYLRTECYGYALGDATRAIELDKK 72
Query: 138 NIRALYGLALS 148
I+ Y A S
Sbjct: 73 YIKGYYRRAAS 83
>3ic6_A Putative methylase family protein; putative methylase family Pro
structural genomics, PSI-2, protein structure
initiative; 2.59A {Neisseria gonorrhoeae fa 1090}
Length = 223
Score = 27.7 bits (62), Expect = 2.6
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 117 GLENIELAISHYLMAINLNEK 137
GL E+ + LM IN N
Sbjct: 153 GLSIEEVRACNRLMTINGNPD 173
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP,
aminoacyl-tRNA synthetase, ATP-binding,
charcot-marie-tooth disease, disease mutation; HET: B4P;
2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A*
2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Length = 693
Score = 27.7 bits (61), Expect = 2.7
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 53 AIKELTEYLKKFMTDQETWQELCDLY-LSEGDYAKAVFCMEELFLHHPHN 101
I EL ++ TW ++ Y L EG +EEL HH H+
Sbjct: 644 EISELPSIVQDLANGNITWADVEARYPLFEGQETGKKETIEELEHHHHHH 693
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 27.5 bits (61), Expect = 3.1
Identities = 10/86 (11%), Positives = 29/86 (33%), Gaps = 7/86 (8%)
Query: 15 RYEEALEHLETIIKI-DETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTD------ 67
+ ++A + +E + + K L+A K +++ + L F
Sbjct: 276 QTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYI 335
Query: 68 QETWQELCDLYLSEGDYAKAVFCMEE 93
+ + ++ S + +A +
Sbjct: 336 EACARSAAAVFESSCHFEQAAAFYRK 361
Score = 26.3 bits (58), Expect = 8.7
Identities = 21/140 (15%), Positives = 40/140 (28%), Gaps = 13/140 (9%)
Query: 10 CFHFFRYEEALEHLETIIKI-----DETNTAARKRKICIL-KAKNKIPEAIKELTEYLKK 63
F Y++AL HLE +++ ++ A I A++ + K
Sbjct: 192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKV 251
Query: 64 FMTDQ-----ETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGL 118
+ L G KA +EE H+ Y ++ +
Sbjct: 252 SREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGL--DHITARSHKFYKELFLFLQAV 309
Query: 119 ENIELAISHYLMAINLNEKN 138
+ ++ EK
Sbjct: 310 YKETVDERKIHDLLSYFEKK 329
>3kty_A Probable methyltransferase; alpha-beta-alpha sandwich, structural
genomics, PSI-2, prote structure initiative; 2.30A
{Bordetella pertussis}
Length = 173
Score = 27.1 bits (61), Expect = 3.4
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 117 GLENIELAISHYLMAINLNEK 137
GL N ++ + H + I N +
Sbjct: 131 GLTNAQIELCHRICHIPANPQ 151
>3ilk_A Uncharacterized tRNA/RRNA methyltransferase HI038; APC63004,
methylase family protein, haemophilus influenzae R
structural genomics; 2.01A {Haemophilus influenzae}
Length = 244
Score = 27.1 bits (61), Expect = 3.6
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 117 GLENIELAISHYLMAINLNEK 137
GL N EL HY + I N
Sbjct: 119 GLTNEELLKCHYHLNIPANPD 139
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
a.7.14.1
Length = 117
Score = 26.5 bits (58), Expect = 3.7
Identities = 10/58 (17%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Query: 12 HFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQE 69
Y+ A+++ ++K + A++ + K E + + E LK+++ ++E
Sbjct: 37 ALQLYQHAVQYFLHVVKYEAQGDKAKQ------SIRAKCTEYL-DRAEKLKEYLKNKE 87
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat,
lysine dimethylation, protein binding; HET: MLY; 1.80A
{Escherichia coli} PDB: 3qdn_A*
Length = 287
Score = 27.1 bits (60), Expect = 3.9
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 15 RYEEALEHLETIIKID--ETNTAARKRKICILKA 46
R EEALE L ++ D + R IL A
Sbjct: 234 RNEEALELLFGHLRXDLTAADGQTRXTFQEILAA 267
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 26.5 bits (59), Expect = 4.0
Identities = 5/33 (15%), Positives = 12/33 (36%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAK 47
+Y++A+ + T +K + K
Sbjct: 94 KYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILK 126
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 27.0 bits (60), Expect = 4.0
Identities = 12/63 (19%), Positives = 29/63 (46%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
++ A++ ++ID +NT A R+ + + +A+ +L + + D+ EL
Sbjct: 288 DWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAEL 347
Query: 75 CDL 77
+
Sbjct: 348 LKV 350
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor
protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB:
2ios_A 2iol_A
Length = 152
Score = 26.4 bits (58), Expect = 4.4
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 72 QELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADIL 112
L YL GD ++A C++EL + H H+ L+++ +L
Sbjct: 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVL 53
>3onp_A TRNA/RRNA methyltransferase (SPOU); structural genomics, PSI-2,
protein structure initiative, MI center for structural
genomics, MCSG; 1.90A {Rhodobacter sphaeroides}
Length = 249
Score = 26.8 bits (60), Expect = 4.5
Identities = 6/21 (28%), Positives = 16/21 (76%)
Query: 117 GLENIELAISHYLMAINLNEK 137
GLEN ++A+++ ++ + +N +
Sbjct: 121 GLENEDVALANAIVTVPVNPE 141
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 26.8 bits (59), Expect = 4.6
Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 7/84 (8%)
Query: 16 YEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ------E 69
Y++A E ++ + K +L + K EA L + + + +
Sbjct: 138 YQQAAAVFENEERLRQAAELIGK-ASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196
Query: 70 TWQELCDLYLSEGDYAKAVFCMEE 93
+ L DY A C+ E
Sbjct: 197 KCIAQVLVQLHRADYVAAQKCVRE 220
Score = 26.4 bits (58), Expect = 7.0
Identities = 17/127 (13%), Positives = 36/127 (28%), Gaps = 26/127 (20%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
+ EA EH+ A + K +K K A + +
Sbjct: 6 KISEAHEHIAK---------AEKYLKTSFMKWKPDYDSAA--------------SEYAKA 42
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLH---QRYADILYTQGGLENIELAISHYLMA 131
+ + +A + H +N L + + L+ + A+ + A
Sbjct: 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKA 102
Query: 132 INLNEKN 138
+ +N
Sbjct: 103 SVMYVEN 109
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 27.2 bits (60), Expect = 5.0
Identities = 19/67 (28%), Positives = 24/67 (35%)
Query: 7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMT 66
II F F E E +IK + N A KR I + E EL E L K
Sbjct: 949 IIDAFFTFAQREQQREAEALIKEENLNEDAAKRYIRTSLKREYATENGTELNETLPKLSP 1008
Query: 67 DQETWQE 73
++
Sbjct: 1009 LNPQYKT 1015
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl
group, riken structural genomics/proteomi initiative,
RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Length = 96
Score = 25.5 bits (56), Expect = 5.4
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRK 40
I+ + F EEA T++ +DE N RK
Sbjct: 62 ILVAYGVFDEEEARNLKPTVVLVDERNRILEVRK 95
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis,
cell cycle, nucleus, phosph RNA-binding, ATP-binding,
helicase, hydrolase; 3.50A {Mus musculus}
Length = 358
Score = 26.6 bits (58), Expect = 5.8
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 68 QETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQ 106
+ L YL GD ++A C++EL + H H+ L+++
Sbjct: 217 VKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYE 255
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar
kinases, HSC70, superfamily; 1.90A {Escherichia coli}
SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A*
Length = 513
Score = 26.5 bits (59), Expect = 6.3
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 68 QETWQELCDLYLSEGDYAKAVFCM-EELF--LHHPHNHLLHQRYADILYTQGGLENIELA 124
T L + Y + + A+ V +++ L H + +L L + L
Sbjct: 316 SRTASSLANQYHIDSEQARRVLDTTMQMYEQWREQQPKLAHPQLEALLRWAAMLHEVGLN 375
Query: 125 ISHY 128
I+H
Sbjct: 376 INHS 379
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A
{Homo sapiens} PDB: 2xwu_B
Length = 963
Score = 26.8 bits (58), Expect = 6.4
Identities = 12/99 (12%), Positives = 31/99 (31%), Gaps = 8/99 (8%)
Query: 51 PEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYAD 110
E ++L + + W L + + F + + + ++D
Sbjct: 39 IENKNLAQKWLMQAQVSPQAWH-FSWQLLQPDKVPEIQY-----FGASALHIKISRYWSD 92
Query: 111 ILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSC 149
I Q E+++ + + K + +AL+
Sbjct: 93 IPTDQ--YESLKAQLFTQITRFASGSKIVLTRLCVALAS 129
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription;
NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B
2l9s_B
Length = 89
Score = 25.3 bits (55), Expect = 7.2
Identities = 9/49 (18%), Positives = 16/49 (32%)
Query: 51 PEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHP 99
P+ K E L + +Q +E Y + + LF +
Sbjct: 28 PDIYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVARLFKNQE 76
>2bh9_A G6PD, glucose-6-phosphate 1-dehydrogenase; oxidoreductase,
oxidoreductase (CHOH(D)-NADP), carbohydrate metabolism,
glucose metabolism; HET: NAP; 2.5A {Homo sapiens} PDB:
2bhl_A* 1qki_A*
Length = 489
Score = 26.3 bits (59), Expect = 7.2
Identities = 6/35 (17%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 55 KELTEYLKKFMTDQETWQELCDL--YLSEGDYAKA 87
K+ + K ++ ++ Y++ G Y A
Sbjct: 56 KQSEPFFKATPEEKLKLEDFFARNSYVA-GQYDDA 89
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 26.3 bits (58), Expect = 7.3
Identities = 7/86 (8%), Positives = 25/86 (29%), Gaps = 7/86 (8%)
Query: 15 RYEEALEHLETIIKI-DETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQ----- 68
+ ++A E+ + + + LK+ + + + +
Sbjct: 279 KIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADL 338
Query: 69 -ETWQELCDLYLSEGDYAKAVFCMEE 93
+ ++ Y ++ KA +
Sbjct: 339 EDFAIDVAKYYHERKNFQKASAYFLK 364
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export,
transcription; 2.12A {Homo sapiens}
Length = 203
Score = 26.0 bits (57), Expect = 7.7
Identities = 24/112 (21%), Positives = 42/112 (37%), Gaps = 7/112 (6%)
Query: 6 YIIGCFHFF--RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKK 63
Y +G F +++A E+L + ++ KR I I K+ E LKK
Sbjct: 18 YYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPTVELLKK 77
Query: 64 FMTDQETWQELCDLYLSEGDYAKAVFCME--ELFLHHPHNHLLHQRYADILY 113
+ + E+ +SEG+ + E F L+ ++ I Y
Sbjct: 78 Y--HLMQFAEVTR-AVSEGNLLLLHEALAKHEAFFIRCGIFLILEKLKIITY 126
>2hzm_B RNA polymerase II mediator complex subunit 18; beta barrel,
channel, transcription; 2.40A {Saccharomyces cerevisiae}
PDB: 2hzs_B 3rj1_E
Length = 317
Score = 26.4 bits (57), Expect = 8.1
Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 8/77 (10%)
Query: 6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKA-----KNKIPEAIKELTEY 60
Y+ FF + L+ I +I+E + +LKA + + I
Sbjct: 214 YLTIGVKFFMKHGLILELQKIWQIEEAGNSQITSGGFLLKAYINVSRGTDIDRINYTETV 273
Query: 61 LKKFMTDQETWQELCDL 77
L ++ Q +L
Sbjct: 274 LMNL---KKELQGYIEL 287
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6
motif two domain P transport protein; HET: NAG B12;
2.60A {Homo sapiens} PDB: 3kq4_A*
Length = 399
Score = 26.3 bits (57), Expect = 8.1
Identities = 10/63 (15%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 141 ALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYEEQ--QGNTETLTELMSAL 198
A+ LAL+C + + + + + ++ + ++ G+ + M AL
Sbjct: 156 AMATLALTCMYNKIPVGSEEGYRSLFGQVLKDIVEKISMKIKDNGIIGDIYSTGLAMQAL 215
Query: 199 QVS 201
V+
Sbjct: 216 SVT 218
>1pqh_A Aspartate 1-decarboxylase; pyruvoyl dependent decarboxylase,
protein SELF-processing; 1.29A {Escherichia coli} SCOP:
b.52.2.1 PDB: 1pqf_A 1pt1_A 1pt0_A 1pyq_A 1ppy_A 1pqe_A
1pyu_B 3tm7_B 1aw8_B 1pyu_A 3tm7_A 1aw8_A
Length = 143
Score = 25.6 bits (56), Expect = 8.4
Identities = 9/46 (19%), Positives = 13/46 (28%), Gaps = 8/46 (17%)
Query: 7 IIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPE 52
II F EEA + + N + + IP
Sbjct: 103 IIASFVTMPDEEARTWRPNVAYFEGDNE--------MKRTAKAIPV 140
>1dpg_A G6PD, glucose 6-phosphate dehydrogenase; oxidoreductase,
NADP/NAD, glucose metabolism, oxidoreductase (CHOH(D) -
NAD(P)); 2.00A {Leuconostoc mesenteroides} SCOP:
c.2.1.3 d.81.1.5 PDB: 1e7y_A* 1e7m_A* 1h93_A 1h94_A*
1h9a_A* 1e77_A* 1h9b_A 2dpg_A*
Length = 485
Score = 26.3 bits (59), Expect = 8.4
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 55 KELTEYLKKFMTDQETWQELCDL--YLSEGDYAKA 87
+ + + +K F DQ + + Y + D A
Sbjct: 56 QLVRDCIKDFTDDQAQAEAFIEHFSYRA-HDVTDA 89
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens}
SCOP: a.118.8.1
Length = 152
Score = 25.6 bits (56), Expect = 8.5
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 8 IGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNK 49
+G + YE+AL+++ +++ + N A++ + I KA K
Sbjct: 79 VGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 120
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.133 0.391
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,134,673
Number of extensions: 185344
Number of successful extensions: 1236
Number of sequences better than 10.0: 1
Number of HSP's gapped: 926
Number of HSP's successfully gapped: 385
Length of query: 201
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 112
Effective length of database: 4,216,824
Effective search space: 472284288
Effective search space used: 472284288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (24.9 bits)