RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12642
(201 letters)
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT
{Human (Homo sapiens) [TaxId: 9606]}
Length = 388
Score = 61.6 bits (148), Expect = 4e-12
Identities = 26/137 (18%), Positives = 50/137 (36%), Gaps = 3/137 (2%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
+ A++ I++ A LK K + EA L+ T ++ L
Sbjct: 252 LIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNL 311
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
++ +G+ +AV + P H A +L QG ++ A+ HY AI +
Sbjct: 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG---KLQEALMHYKEAIRI 368
Query: 135 NEKNIRALYGLALSCHQ 151
+ A + + +
Sbjct: 369 SPTFADAYSNMGNTLKE 385
Score = 57.4 bits (137), Expect = 1e-10
Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 3/137 (2%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
++ A+ + + + C+ + I AI ++ + + L
Sbjct: 218 IFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNL 277
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
+ +G A+A C P + A+I QG NIE A+ Y A+ +
Sbjct: 278 ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG---NIEEAVRLYRKALEV 334
Query: 135 NEKNIRALYGLALSCHQ 151
+ A LA Q
Sbjct: 335 FPEFAAAHSNLASVLQQ 351
Score = 38.9 bits (89), Expect = 2e-04
Identities = 16/102 (15%), Positives = 35/102 (34%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
EA + T +++ T+ + I + + I EA++ + L+ F L
Sbjct: 286 SVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNL 345
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQG 116
+ +G +A+ +E P + + L
Sbjct: 346 ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387
Score = 38.1 bits (87), Expect = 4e-04
Identities = 14/104 (13%), Positives = 32/104 (30%), Gaps = 3/104 (2%)
Query: 73 ELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAI 132
EL GD+ A +L+ P N + + I + ++ + +AI
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCR---RLDRSAHFSTLAI 60
Query: 133 NLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKH 176
N A L + + + + + ++ +
Sbjct: 61 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGY 104
Score = 36.6 bits (83), Expect = 0.001
Identities = 14/94 (14%), Positives = 29/94 (30%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
+E A H + + + NT I ++ + T +K+ E + L
Sbjct: 14 DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNL 73
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRY 108
++Y G +A+ P +
Sbjct: 74 GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINL 107
Score = 35.0 bits (79), Expect = 0.004
Identities = 12/69 (17%), Positives = 27/69 (39%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
EEA+ +++ AA +L+ + K+ EA+ E ++ T + + +
Sbjct: 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 379
Query: 75 CDLYLSEGD 83
+ D
Sbjct: 380 GNTLKEMQD 388
Score = 33.5 bits (75), Expect = 0.013
Identities = 3/69 (4%), Positives = 17/69 (24%)
Query: 47 KNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQ 106
A + + ++ + L ++ ++ +P +
Sbjct: 12 AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYS 71
Query: 107 RYADILYTQ 115
++ +
Sbjct: 72 NLGNVYKER 80
Score = 26.6 bits (57), Expect = 2.3
Identities = 36/221 (16%), Positives = 66/221 (29%), Gaps = 39/221 (17%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIK------------------- 55
R + + IK + A + K + ++ EAI+
Sbjct: 48 RLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINL 107
Query: 56 ---------------ELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPH 100
L+ +L +L + G +A C + P+
Sbjct: 108 AAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN 167
Query: 101 NHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALY--GLALSCHQVLTSAKC 158
+ + QG I LAI H+ A+ L+ + A G L ++ A
Sbjct: 168 FAVAWSNLGCVFNAQG---EIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVA 224
Query: 159 SAAKKKEISKQMMWVSKHLARQYEEQQGNTETLTELMSALQ 199
+ + +S V +LA Y EQ + A++
Sbjct: 225 AYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE 265
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio
parahaemolyticus [TaxId: 670]}
Length = 264
Score = 50.0 bits (119), Expect = 3e-08
Identities = 20/135 (14%), Positives = 38/135 (28%), Gaps = 4/135 (2%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
+ ++ALE L IK + + R I +L A ++L + +K F +L
Sbjct: 11 QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL 70
Query: 75 CDLYLSEGDYAKAVF-CMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAIN 133
L + L ++ + E L
Sbjct: 71 RHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQ---DYEQVSELALQIEE 127
Query: 134 LNEKNIRALYGLALS 148
L ++ + S
Sbjct: 128 LRQEKGFLANDTSFS 142
Score = 45.4 bits (107), Expect = 1e-06
Identities = 11/102 (10%), Positives = 33/102 (32%)
Query: 46 AKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLH 105
++ ++ +A++ L E +K D +L +GD+ +A + + P
Sbjct: 8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 67
Query: 106 QRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLAL 147
+ ++ ++ + + E +
Sbjct: 68 SQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLS 109
Score = 44.6 bits (105), Expect = 2e-06
Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 5/124 (4%)
Query: 78 YLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK 137
LSEG +A+ + E P + L + ++L G + E A + +I L +
Sbjct: 6 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDG---DFERADEQLMQSIKLFPE 62
Query: 138 NIRA--LYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYEEQQGNTETLTELM 195
+ + Q AA K + + ++ + E ++EL
Sbjct: 63 YLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELA 122
Query: 196 SALQ 199
++
Sbjct: 123 LQIE 126
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId:
9606]}
Length = 497
Score = 49.4 bits (117), Expect = 6e-08
Identities = 20/132 (15%), Positives = 40/132 (30%), Gaps = 5/132 (3%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
Y + L+ L T+ +D + I + +K + Q L
Sbjct: 101 FYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS--YICQHCLVHL 158
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
D+ ++A P N + + A + ++G + I +Y +I +
Sbjct: 159 GDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKG---DHLTTIFYYCRSIAV 215
Query: 135 NEKNIRALYGLA 146
A L
Sbjct: 216 KFPFPAASTNLQ 227
Score = 32.1 bits (72), Expect = 0.039
Identities = 14/182 (7%), Positives = 53/182 (29%), Gaps = 5/182 (2%)
Query: 18 EALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDL 77
++ ++L + T ++ + ++ + + +++ ++ D++ Q+L +
Sbjct: 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLWNH 63
Query: 78 YLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK 137
+ +P+ + + L + N++
Sbjct: 64 AFKN---QITTLQGQAKNRANPNRSEVQANLSLFLEA--ASGFYTQLLQELCTVFNVDLP 118
Query: 138 NIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYEEQQGNTETLTELMSA 197
L + ++ ++ + S HL + ++ + A
Sbjct: 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHA 178
Query: 198 LQ 199
Q
Sbjct: 179 AQ 180
>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase
alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}
Length = 315
Score = 41.1 bits (95), Expect = 4e-05
Identities = 15/132 (11%), Positives = 47/132 (35%), Gaps = 4/132 (3%)
Query: 15 RYEEALEHLETIIKIDETN-TAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQE 73
R E A + I+++ N T R++ + + + E + +T +++ + + W
Sbjct: 58 RSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH 117
Query: 74 LCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAIN 133
L D ++ + + ++ N+ Q ++ + + + + +
Sbjct: 118 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE---FKLWDNELQYVDQLLK 174
Query: 134 LNEKNIRALYGL 145
+ +N
Sbjct: 175 EDVRNNSVWNQR 186
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase
alpha-subunit, N-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 334
Score = 35.0 bits (79), Expect = 0.004
Identities = 13/137 (9%), Positives = 40/137 (29%), Gaps = 7/137 (5%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
E L +++I + +N ++ + C+L + P++ + + + E Q
Sbjct: 159 APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNA 218
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
++ + L + + L++ +
Sbjct: 219 FFTD----PNDQSAWFYHRWLLGRAEPLFRCELSVEKSTV---LQSELESCKELQELEPE 271
Query: 135 NEKNIRALYGLALSCHQ 151
N+ + + L +
Sbjct: 272 NKWCLLTIILLMRALDP 288
Score = 30.7 bits (68), Expect = 0.11
Identities = 12/119 (10%), Positives = 26/119 (21%)
Query: 6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFM 65
+ F +++ + + + E+ KEL E +
Sbjct: 214 LVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENK 273
Query: 66 TDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELA 124
T L + + L P + + +E A
Sbjct: 274 WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYA 332
Score = 28.8 bits (63), Expect = 0.42
Identities = 21/183 (11%), Positives = 47/183 (25%), Gaps = 12/183 (6%)
Query: 15 RYEEALEHLETIIKID-ETNTAARKRKICILKAKN---------KIPEAIKELTEYLKKF 64
E LE I+ + + T R+ + + + + L L+
Sbjct: 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN 103
Query: 65 MTDQETWQE--LCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIE 122
TW L E ++A+ + N + E
Sbjct: 104 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEE 163
Query: 123 LAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYE 182
LA + L+ N + + L + + + + + + ++
Sbjct: 164 LAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP 223
Query: 183 EQQ 185
Q
Sbjct: 224 NDQ 226
Score = 27.7 bits (60), Expect = 1.1
Identities = 21/196 (10%), Positives = 45/196 (22%), Gaps = 6/196 (3%)
Query: 6 YIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKI-CILKAKNKIPEAIKELTEYLKKF 64
+++ + LE ++ DE N + +A E + + +
Sbjct: 115 WLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN 174
Query: 65 MTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELA 124
++ +W L + L Q
Sbjct: 175 FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFY--- 231
Query: 125 ISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYEEQ 184
H + L + Q + + + +K + L R +
Sbjct: 232 --HRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPL 289
Query: 185 QGNTETLTELMSALQV 200
ETL + V
Sbjct: 290 LYEKETLQYFSTLKAV 305
>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment
{Cow (Bos taurus) [TaxId: 9913]}
Length = 336
Score = 33.3 bits (76), Expect = 0.014
Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 15/121 (12%)
Query: 22 HLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSE 81
E I + + + + ++ IP+ ++ + W EL LY
Sbjct: 136 FTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQA--------HLWAELVFLYDKY 187
Query: 82 GDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRA 141
+Y A+ M ++HP + ++ DI+ +E AI YL +
Sbjct: 188 EEYDNAIITM----MNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF---KPLLLND 240
Query: 142 L 142
L
Sbjct: 241 L 241
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing
protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 201
Score = 31.5 bits (70), Expect = 0.051
Identities = 18/182 (9%), Positives = 39/182 (21%), Gaps = 6/182 (3%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
+Y EA I + + + +A+ + L+ + L
Sbjct: 19 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
L Y +A+ ++ + L I +
Sbjct: 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL------RIAKKKRWNSIEERR 132
Query: 135 NEKNIRALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYEEQQGNTETLTEL 194
+ L + E + + A + + EL
Sbjct: 133 IHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDEL 192
Query: 195 MS 196
S
Sbjct: 193 FS 194
>d1s5qb_ a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 29.5 bits (66), Expect = 0.070
Identities = 9/50 (18%), Positives = 16/50 (32%)
Query: 51 PEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPH 100
P+ K E L + +Q +E Y + + LF +
Sbjct: 28 PDIYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVARLFKNQED 77
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 159
Score = 30.4 bits (67), Expect = 0.077
Identities = 16/122 (13%), Positives = 42/122 (34%), Gaps = 1/122 (0%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
YE A++ I+++ +N + A+ + T ++ + +
Sbjct: 25 DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRR 84
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
++ G + A+ E + PH+ +Y + + E AI+ ++
Sbjct: 85 AASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIV-KQKAFERAIAGDEHKRSV 143
Query: 135 NE 136
+
Sbjct: 144 VD 145
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1
(PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 30.9 bits (68), Expect = 0.081
Identities = 14/99 (14%), Positives = 29/99 (29%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
A+ E ++ D + A + + AI L L+ +Q L
Sbjct: 34 DLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMAL 93
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILY 113
+ +E +A + + + P L +
Sbjct: 94 AVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAG 132
Score = 26.3 bits (56), Expect = 2.9
Identities = 12/109 (11%), Positives = 24/109 (22%)
Query: 43 ILKAKNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNH 102
+ +P A+ +++ E WQ L A+ + P N
Sbjct: 28 RRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQ 87
Query: 103 LLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 151
A + + +L + A
Sbjct: 88 TALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGL 136
Score = 24.8 bits (52), Expect = 8.0
Identities = 15/134 (11%), Positives = 38/134 (28%), Gaps = 1/134 (0%)
Query: 10 CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQE 69
Y++A++ + + + + L N+ EA+ L+
Sbjct: 182 FNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 241
Query: 70 TWQELCDLYLSEGDYAKAVFCMEELFLHHPHNH-LLHQRYADILYTQGGLENIELAISHY 128
+ L ++ G + +AV E + + A L +
Sbjct: 242 SRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS 301
Query: 129 LMAINLNEKNIRAL 142
+ +++ L
Sbjct: 302 DAYGAADARDLSTL 315
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
Length = 128
Score = 28.7 bits (63), Expect = 0.22
Identities = 14/98 (14%), Positives = 37/98 (37%), Gaps = 7/98 (7%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
++ AL+H + ++D TN + + K + + + ++ ++E ++++
Sbjct: 19 DFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQI 78
Query: 75 C-------DLYLSEGDYAKAVFCMEELFLHHPHNHLLH 105
+ Y E Y A+ + H +L
Sbjct: 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLK 116
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 28.5 bits (62), Expect = 0.27
Identities = 14/97 (14%), Positives = 32/97 (32%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
++AL+ IK+D N + K +A ++ + + + +
Sbjct: 18 NIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRK 77
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADI 111
+ +A EE H +N L + ++
Sbjct: 78 AAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 114
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 124
Score = 28.2 bits (63), Expect = 0.31
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 8 IGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNK 49
IGC+ Y A +++T+ + + N K + K
Sbjct: 81 IGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDKIQK 122
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 27.5 bits (60), Expect = 0.50
Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 4/87 (4%)
Query: 69 ETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQG----GLENIELA 124
E EL + +E DY ME+ + +L +++ A
Sbjct: 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKA 65
Query: 125 ISHYLMAINLNEKNIRALYGLALSCHQ 151
+ + L+ ++ RA L +
Sbjct: 66 LLLTKKLLELDPEHQRANGNLKYFEYI 92
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey
(Saimiri boliviensis) [TaxId: 27679]}
Length = 168
Score = 28.0 bits (61), Expect = 0.65
Identities = 11/60 (18%), Positives = 23/60 (38%)
Query: 10 CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQE 69
+E A E +++++ N AAR + K + E + + K +Q+
Sbjct: 108 QLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMFKKFAEQD 167
>d1bt3a_ a.86.1.2 (A:) Catechol oxidase {Sweet potato (Ipomoea
batatas) [TaxId: 4120]}
Length = 341
Score = 27.5 bits (60), Expect = 1.3
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Query: 71 WQELCDLYLSEGDYAKAVFCMEELFLHHPHNHL----LHQRYADILYTQGGLENIELAIS 126
+ +++ +AKAV M+ L P N +H Y + Y Q + E+ +
Sbjct: 52 AHTMDKDAIAK--FAKAVELMKALPADDPRNFYQQALVHCAYCNGGYDQVNFPDQEIQV- 108
Query: 127 HY 128
H
Sbjct: 109 HN 110
>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella
typhimurium [TaxId: 90371]}
Length = 390
Score = 27.1 bits (59), Expect = 1.4
Identities = 12/71 (16%), Positives = 20/71 (28%), Gaps = 19/71 (26%)
Query: 50 IPE----AIKELTEYLKKFMTDQETWQELCDLY---------------LSEGDYAKAVFC 90
+P+ A+ +L E D E + DL ++ G
Sbjct: 16 VPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQNITAGTRTTLYLK 75
Query: 91 MEELFLHHPHN 101
E+L H
Sbjct: 76 REDLLHGGAHK 86
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId:
562]}
Length = 259
Score = 27.1 bits (58), Expect = 1.4
Identities = 18/186 (9%), Positives = 41/186 (22%), Gaps = 1/186 (0%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
A + I L A + L+ T
Sbjct: 52 LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR 111
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINL 134
G A + + P++ + E+ H+ +
Sbjct: 112 GIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE 171
Query: 135 NEKNIRALYGL-ALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYEEQQGNTETLTE 193
+ L +S ++ K A +++ + + +L + Y
Sbjct: 172 QWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATAL 231
Query: 194 LMSALQ 199
A+
Sbjct: 232 FKLAVA 237
>d1n8va_ a.118.21.1 (A:) Chemosensory protein Csp2 {Cabbage moth
(Mamestra brassicae) [TaxId: 55057]}
Length = 101
Score = 25.8 bits (57), Expect = 2.1
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 13/53 (24%)
Query: 47 KNKIPEAI-----------KELTEYLKKFMTDQ--ETWQELCDLYLSEGDYAK 86
K + +AI ++ + + + E W+EL Y G++ K
Sbjct: 42 KEHLQDAIENGCKKCTENQEKGAYRVIEHLIKNEIEIWRELTAKYDPTGNWRK 94
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus)
[TaxId: 9913]}
Length = 169
Score = 26.2 bits (56), Expect = 2.1
Identities = 7/48 (14%), Positives = 17/48 (35%)
Query: 10 CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKEL 57
Y++AL L+ +I + A + + + + + K
Sbjct: 121 WQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAA 168
>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR,
middle domain {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 179
Score = 26.0 bits (56), Expect = 2.5
Identities = 18/117 (15%), Positives = 36/117 (30%), Gaps = 15/117 (12%)
Query: 15 RYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKFMTDQETWQEL 74
R+E+A HL A R+ + +L T ++ +
Sbjct: 26 RFEQASRHLSA---------ALREWRGPVLDDLRDFQFVEPFATALVEDKV---LAHTAK 73
Query: 75 CDLYLSEGDYAKAVFCMEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMA 131
+ ++ G + + +E L HP+ L + Y + A+ Y
Sbjct: 74 AEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYL---SDRQSDALGAYRRV 127
>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 386
Score = 26.4 bits (57), Expect = 2.7
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 50 IPE----AIKELTEYLKKFMTDQETWQELCDLY 78
+PE +KEL + K+F D+E ++L
Sbjct: 11 VPETLIEPLKELEKAYKRFKDDEEFNRQLNYYL 43
>d3bzka3 a.294.1.1 (A:1-324) Transcriptional accessory factor Tex
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 324
Score = 25.6 bits (56), Expect = 4.1
Identities = 24/143 (16%), Positives = 51/143 (35%), Gaps = 17/143 (11%)
Query: 45 KAKNKIPEAIKE---LTEYLKKFMTDQETWQELCDLYL-------SEGDYAKAVFCME-- 92
+ + I +I+E LT L + + +T L DLYL ++G A
Sbjct: 72 ERRGAILASIEEQGKLTPELARDIKLADTKTRLEDLYLPYKQKRRTKGQIALEAGLGALA 131
Query: 93 ELFLHHPHNHLLHQRYADILYTQGGLENIELAIS--HYLMAINLNE-KNIRALYGLALSC 149
+ P A + + G +++ + Y++ E + + +
Sbjct: 132 DALFDDPTLVPE-SEAARFVDAEKGFADVKAVLEGAKYILMERFAEDATLLDKLRVFMKN 190
Query: 150 HQVLTSAKCSAAKKKEISKQMMW 172
LT+ + K++E +K +
Sbjct: 191 EATLTA-RVVPGKEQEGAKFSDY 212
>d2okga1 c.124.1.8 (A:89-338) Central glycolytic gene regulator CggR
{Bacillus subtilis [TaxId: 1423]}
Length = 250
Score = 25.3 bits (55), Expect = 4.9
Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 3/67 (4%)
Query: 10 CFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTE--YLKKFMTD 67
++F + + H + + + A I + +K EAI+ + +TD
Sbjct: 183 FGYYFNADGEVVHKVHSVGMQLDDIDAIPDIIAVAGGSSKA-EAIEAYFKKPRNTVLVTD 241
Query: 68 QETWQEL 74
+ ++L
Sbjct: 242 EGAAKKL 248
>d3gtub1 a.45.1.1 (B:85-224) Class mu GST {Human (Homo sapiens)
[TaxId: 9606]}
Length = 140
Score = 24.7 bits (53), Expect = 6.2
Identities = 9/57 (15%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Query: 47 KNKIPEAIKELTEYLKKFMTDQETWQELCDLYLSEGDYAKAVFCMEELFLHHPHNHL 103
+ P+ ++EL LK+F + L+ D+ + + + L
Sbjct: 40 EKLKPQYLEELPGQLKQFSMFLGKFSWFAGEKLTFVDF--LTYDILDQNRIFDPKCL 94
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 24.6 bits (52), Expect = 8.5
Identities = 8/69 (11%), Positives = 24/69 (34%)
Query: 1 MAPIVYIIGCFHFFRYEEALEHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEY 60
+E A + ++++ N AA+ + + + K+L
Sbjct: 97 KGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYAN 156
Query: 61 LKKFMTDQE 69
+ + + ++E
Sbjct: 157 MFERLAEEE 165
>d1s4ca1 b.82.2.7 (A:1-143) Hypothetical protein HI0227 {Haemophilus
influenzae [TaxId: 727]}
Length = 143
Score = 24.0 bits (52), Expect = 9.7
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 104 LHQRYADILYTQGGLENIELAISHYLMAI--NLNEKNIRALY 143
LH Y D+ G ENIE+ ++ ++ + NE + L
Sbjct: 64 LHHEYLDVQVLIRGTENIEVGATYPNLSKYEDYNEADDYQLC 105
>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 75
Score = 23.3 bits (50), Expect = 9.8
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 21 EHLETIIKIDETNTAARKRKICILKAKNKIPEAIKELTEYLKKF 64
IKIDE + R I I +++I A L +K++
Sbjct: 31 HESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 74
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.133 0.391
Gapped
Lambda K H
0.267 0.0508 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 761,521
Number of extensions: 34739
Number of successful extensions: 236
Number of sequences better than 10.0: 1
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 82
Length of query: 201
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 120
Effective length of database: 1,295,466
Effective search space: 155455920
Effective search space used: 155455920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.9 bits)