BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12643
(144 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 59.3 bits (142), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 33/50 (66%)
Query: 67 CPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTDDA 116
CP+C + + +GES ++L C H FH +CI+PWLE+ +CP+CR +
Sbjct: 18 CPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT 67
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 59.3 bits (142), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 45 PPASKAFVKSLQEVTSHE------PESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWL 98
PPASK + +L E+ E E CPIC ++ G+ A +L C H FH C+ WL
Sbjct: 15 PPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWL 74
Query: 99 EKTSTCPLCRHEF 111
+K+ TCP+CR F
Sbjct: 75 QKSGTCPVCRCMF 87
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 51/113 (45%), Gaps = 13/113 (11%)
Query: 11 APLG-PG--ETPNHMLHLARLLRDFGMNPYEFNDELPPPASKAFVKSLQ--EVTSH---- 61
PLG PG E M L R +DF N EL + Q EV SH
Sbjct: 1 GPLGSPGFQEHWALMEELNRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDV 60
Query: 62 -EPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKT 113
E E C IC + F+ A L+C H+F S CI W+++ CP+CR + K+
Sbjct: 61 LENELQCIICSEYFI---EAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 110
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
Query: 22 MLHLARLLRDFGMNPYEFNDELPPPASKAFVKSLQ--EVTSH-----EPESSCPICLKLF 74
M L R +DF N EL + Q EV SH E E C IC + F
Sbjct: 4 MEELNRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYF 63
Query: 75 LVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKT 113
+ A L+C H+F S CI W+++ CP+CR + K+
Sbjct: 64 I---EAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
Query: 22 MLHLARLLRDFGMNPYEFNDELPPPASKAFVKSLQ--EVTSH-----EPESSCPICLKLF 74
M L R +DF N EL + Q EV SH E E C IC + F
Sbjct: 4 MEELNRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYF 63
Query: 75 LVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKT 113
+ A L+C H+F S CI W+++ CP+CR + K+
Sbjct: 64 I---EAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 67 CPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKT 113
C ICL + GE ++L C H FH C+ WL CP+CR + +
Sbjct: 17 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 42.7 bits (99), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 67 CPICLKLFLVGESAKKL-DCKHTFHSTCILPWLEKTSTCPLCR 108
C +CL GE A+ L C H FH+ C+ WL STCPLCR
Sbjct: 8 CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 50
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 59 TSHEPESS-CPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCR 108
+H+ E + C +C+ F + + L C H FH+ C+ WL+ TCP+CR
Sbjct: 17 NNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICR 67
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 47 ASKAFVKSLQEVTSHEPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPL 106
S ++E+ HE C +CL+ F + CKH FH C++ WLE CPL
Sbjct: 1 GSSGSSGKVKELNLHE---LCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPL 57
Query: 107 C 107
C
Sbjct: 58 C 58
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 57 EVTSHEPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLC 107
++T P C +C F+ ++ ++C H+F TCI+ +LE + CP+C
Sbjct: 8 KITELNPHLMCVLCGGYFI--DATTIIECLHSFCKTCIVRYLETSKYCPIC 56
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 57 EVTSHEPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLC 107
++T P C +C F+ ++ ++C H+F TCI+ +LE + CP+C
Sbjct: 8 KITELNPHLMCVLCGGYFI--DATTIIECLHSFCKTCIVRYLETSKYCPIC 56
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 57 EVTSHEPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLC 107
++T P C +C F+ ++ ++C H+F TCI+ +LE + CP+C
Sbjct: 4 KITELNPHLMCVLCGGYFI--DATTIIECLHSFCKTCIVRYLETSKYCPIC 52
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 34.7 bits (78), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 67 CPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCR 108
CPICL+ + L C H F CI W+ + TCPLC+
Sbjct: 8 CPICLED--PSNYSMALPCLHAFCYVCITRWIRQNPTCPLCK 47
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 34.3 bits (77), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 66 SCPICL----KLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEF 111
SCPIC+ ++ G +C H F S C+ L+ +TCP CR +
Sbjct: 12 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 61
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 34.3 bits (77), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 21/28 (75%)
Query: 84 DCKHTFHSTCILPWLEKTSTCPLCRHEF 111
+C H+FH+ C+ W+++ + CPLC+ ++
Sbjct: 47 ECNHSFHNCCMSLWVKQNNRCPLCQQDW 74
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 34.3 bits (77), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 66 SCPICL----KLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEF 111
SCPIC+ ++ G +C H F S C+ L+ +TCP CR +
Sbjct: 5 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 54
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 34.3 bits (77), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 66 SCPICL----KLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEF 111
SCPIC+ ++ G +C H F S C+ L+ +TCP CR +
Sbjct: 9 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 58
Score = 34.3 bits (77), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 66 SCPICL----KLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEF 111
SCPIC+ ++ G +C H F S C+ L+ +TCP CR +
Sbjct: 74 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 123
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 34.3 bits (77), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 66 SCPICL----KLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEF 111
SCPIC+ ++ G +C H F S C+ L+ +TCP CR +
Sbjct: 17 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 34.3 bits (77), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 9/58 (15%)
Query: 64 ESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKT------STCPLCRHEFKTDD 115
E +CPICL+L LDC H+F C+ +K+ S+CP+CR ++ ++
Sbjct: 19 EVTCPICLELL---TQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 33.1 bits (74), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 64 ESSCPICLK-LFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRH 109
+ +CPICL+ + A L C H H TC L++ CPLC H
Sbjct: 5 QQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCMH 51
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 32.3 bits (72), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 10/65 (15%)
Query: 47 ASKAFVKSLQEVTSHEPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPL 106
S VK L + E C IC+ G + L C H+F CI W ++ CP+
Sbjct: 4 GSSGRVKQLTD------EEECCICMD----GRADLILPCAHSFCQKCIDKWSDRHRNCPI 53
Query: 107 CRHEF 111
CR +
Sbjct: 54 CRLQM 58
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 9/51 (17%)
Query: 64 ESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKT------STCPLCR 108
E +CPICL+L SA DC H+F CI E CP+CR
Sbjct: 19 EVTCPICLELLKEPVSA---DCNHSFCRACITLNYESNRNTDGKGNCPVCR 66
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 64 ESSCPICLK-LFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLC 107
S CPICL+ + A L C H H TC L++ CPLC
Sbjct: 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 30.0 bits (66), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 85 CKHTFHSTCILPWLEKTSTCPLCRHEFK 112
C H FH CI WL+ CPL E++
Sbjct: 84 CNHAFHFHCISRWLKTRQVCPLDNREWE 111
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 30.0 bits (66), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 85 CKHTFHSTCILPWLEKTSTCPLCRHEFK 112
C H FH CI WL+ CPL E++
Sbjct: 75 CNHAFHFHCISRWLKTRQVCPLDNREWE 102
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 29.6 bits (65), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 85 CKHTFHSTCILPWLEKTSTCPLCRHEFK 112
C H FH CI WL+ CPL E++
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPLDNREWE 100
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 29.6 bits (65), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 85 CKHTFHSTCILPWLEKTSTCPLCRHEFK 112
C H FH CI WL+ CPL E++
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPLDNREWE 100
>pdb|2EGP|A Chain A, Solution Structure Of The Ring-Finger Domain From Human
Tripartite Motif Protein 34
Length = 79
Score = 29.6 bits (65), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 10/53 (18%)
Query: 62 EPESSCPICLKLFLVGESAKKLDCKHTFHSTCI-------LPWLEKTSTCPLC 107
+ E +CPICL+L LDC H+ CI + + S+CP+C
Sbjct: 10 QEEVTCPICLELL---TEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVC 59
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 29.6 bits (65), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 85 CKHTFHSTCILPWLEKTSTCPLCRHEFK 112
C H FH CI WL+ CPL E++
Sbjct: 65 CNHAFHFHCISRWLKTRQVCPLDNREWE 92
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 29.3 bits (64), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 85 CKHTFHSTCILPWLEKTSTCPL 106
C H FH CI WL+ CPL
Sbjct: 67 CNHAFHFHCISRWLKTRQVCPL 88
>pdb|1WOV|A Chain A, Crystal Strucure Of Heme Oxygenase-2 From Synechocystis
Sp. Pcc 6803 In Complex With Heme
pdb|1WOV|B Chain B, Crystal Strucure Of Heme Oxygenase-2 From Synechocystis
Sp. Pcc 6803 In Complex With Heme
pdb|1WOW|A Chain A, Crystal Structure Of Heme Oxygenase-2 From Synechocystis
Sp. Pcc 6803 Complexed With Heme In Ferrous Form
pdb|1WOW|B Chain B, Crystal Structure Of Heme Oxygenase-2 From Synechocystis
Sp. Pcc 6803 Complexed With Heme In Ferrous Form
pdb|1WOX|A Chain A, Crystal Structure Of Heme Oxygenase-2 From Synechocystis
Sp. Pcc 6803 In Complex With Heme And No
pdb|1WOX|B Chain B, Crystal Structure Of Heme Oxygenase-2 From Synechocystis
Sp. Pcc 6803 In Complex With Heme And No
Length = 250
Score = 29.3 bits (64), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 8/76 (10%)
Query: 44 PPPASKAFVKSLQEVTSHEPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTST 103
P P +K +V L+ + + EPE C +L G+ + K+ S LP E T+
Sbjct: 97 PTPCAKIYVDRLKTIAASEPELLIAHCYTRYL-GDLSGGQSLKNIIRSALQLPEGEGTAM 155
Query: 104 -------CPLCRHEFK 112
P R +FK
Sbjct: 156 YEFDSLPTPGDRRQFK 171
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 29.3 bits (64), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 85 CKHTFHSTCILPWLEKTSTCPL 106
C H FH CI WL+ CPL
Sbjct: 57 CNHAFHFHCISRWLKTRQVCPL 78
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 28.9 bits (63), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 62 EPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPW---LEKTSTCPLC 107
+ E+SC +CL+ + ++C H F CI W LE+ CP+C
Sbjct: 13 QVEASCSVCLEYL---KEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58
>pdb|3MEN|A Chain A, Crystal Structure Of Acetylpolyamine Aminohydrolase From
Burkholderia Pseudomallei, Iodide Soak
pdb|3MEN|B Chain B, Crystal Structure Of Acetylpolyamine Aminohydrolase From
Burkholderia Pseudomallei, Iodide Soak
pdb|3MEN|C Chain C, Crystal Structure Of Acetylpolyamine Aminohydrolase From
Burkholderia Pseudomallei, Iodide Soak
pdb|3MEN|D Chain D, Crystal Structure Of Acetylpolyamine Aminohydrolase From
Burkholderia Pseudomallei, Iodide Soak
Length = 362
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 10/71 (14%)
Query: 6 DEFNIAPLGPGETPNHMLHLARLLRDFGMNPYEFNDELPPPASKAFVKS-------LQEV 58
D+F IAP+ +++ L + R++ P ++ DE S FV+ L +
Sbjct: 72 DDFGIAPIAAVHDTHYLRFLETVHREWKAMPEDWGDE---AMSNIFVREPNALRGVLAQA 128
Query: 59 TSHEPESSCPI 69
H + SCP+
Sbjct: 129 ARHLADGSCPV 139
>pdb|2WBT|A Chain A, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
pdb|2WBT|B Chain B, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
Length = 129
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 11/50 (22%)
Query: 67 CPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTDDA 116
CP+CL F S K+ + + E T CP+C+ EF + D+
Sbjct: 77 CPLCLMPFSSSVSLKQH-----------IRYTEHTKVCPVCKKEFTSTDS 115
>pdb|1OU5|A Chain A, Crystal Structure Of Human Cca-Adding Enzyme
pdb|1OU5|B Chain B, Crystal Structure Of Human Cca-Adding Enzyme
Length = 448
Score = 27.3 bits (59), Expect = 3.4, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 20 NHMLHLARLLRDFGMNPYEFNDELPPPAS-KAFVKSLQEVTSHEPESSCPICL--KLFLV 76
NH+ HL L+ D + PY LP AS + F K + V P+ P+ L LF V
Sbjct: 263 NHVNHLIHLIYDLDVAPY---IGLPANASLEEFDKVSKNVDGFSPK---PVTLLASLFKV 316
Query: 77 GESAKKLDCK 86
+ KLD +
Sbjct: 317 QDDVTKLDLR 326
>pdb|3L04|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
E92p Mutant Complexed With Carbamyl Phosphate And N-
Succinyl-L-Norvaline
Length = 359
Score = 26.9 bits (58), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 7 EFNIAPLGPGETPNHMLHLARLLRDF 32
EFN+ + G+TP H+ +AR+L +
Sbjct: 100 EFNLGTVMDGDTPEHIAEVARVLGRY 125
>pdb|4HB4|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 1023
Score = 26.9 bits (58), Expect = 4.3, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 17 ETPNHMLHLARLLRDFGMNPYEFNDELPPPASKAFVKSL 55
E P H + +LL+ + ELPP A K FV ++
Sbjct: 816 EYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAI 854
>pdb|4HB3|C Chain C, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
Length = 1023
Score = 26.9 bits (58), Expect = 4.3, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 17 ETPNHMLHLARLLRDFGMNPYEFNDELPPPASKAFVKSL 55
E P H + +LL+ + ELPP A K FV ++
Sbjct: 816 EYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAI 854
>pdb|4HB2|C Chain C, Crystal Structure Of Crm1-ran-ranbp1
Length = 1023
Score = 26.9 bits (58), Expect = 4.3, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 17 ETPNHMLHLARLLRDFGMNPYEFNDELPPPASKAFVKSL 55
E P H + +LL+ + ELPP A K FV ++
Sbjct: 816 EYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAI 854
>pdb|4HB0|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
Length = 1023
Score = 26.9 bits (58), Expect = 4.3, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 17 ETPNHMLHLARLLRDFGMNPYEFNDELPPPASKAFVKSL 55
E P H + +LL+ + ELPP A K FV ++
Sbjct: 816 EYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAI 854
>pdb|4HAY|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
Length = 1023
Score = 26.9 bits (58), Expect = 4.3, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 17 ETPNHMLHLARLLRDFGMNPYEFNDELPPPASKAFVKSL 55
E P H + +LL+ + ELPP A K FV ++
Sbjct: 816 EYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAI 854
>pdb|4HAX|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
Length = 1023
Score = 26.9 bits (58), Expect = 4.3, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 17 ETPNHMLHLARLLRDFGMNPYEFNDELPPPASKAFVKSL 55
E P H + +LL+ + ELPP A K FV ++
Sbjct: 816 EYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAI 854
>pdb|4HAW|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
Length = 1023
Score = 26.9 bits (58), Expect = 4.3, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 17 ETPNHMLHLARLLRDFGMNPYEFNDELPPPASKAFVKSL 55
E P H + +LL+ + ELPP A K FV ++
Sbjct: 816 EYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAI 854
>pdb|4HAT|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|C Chain C, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
Length = 1023
Score = 26.9 bits (58), Expect = 4.3, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 17 ETPNHMLHLARLLRDFGMNPYEFNDELPPPASKAFVKSL 55
E P H + +LL+ + ELPP A K FV ++
Sbjct: 816 EYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAI 854
>pdb|3VYC|A Chain A, Crystal Structure Of Unliganded Saccharomyces Cerevisiae
Crm1 (Xpo1p)
Length = 1033
Score = 26.9 bits (58), Expect = 4.3, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 17 ETPNHMLHLARLLRDFGMNPYEFNDELPPPASKAFVKSL 55
E P H + +LL+ + ELPP A K FV ++
Sbjct: 814 EYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAI 852
>pdb|4GPT|C Chain C, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|C Chain C, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
Length = 1060
Score = 26.9 bits (58), Expect = 4.3, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 17 ETPNHMLHLARLLRDFGMNPYEFNDELPPPASKAFVKSL 55
E P H + +LL+ + ELPP A K FV ++
Sbjct: 853 EYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAI 891
>pdb|4HAZ|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
Length = 1023
Score = 26.9 bits (58), Expect = 4.4, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 17 ETPNHMLHLARLLRDFGMNPYEFNDELPPPASKAFVKSL 55
E P H + +LL+ + ELPP A K FV ++
Sbjct: 816 EYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAI 854
>pdb|3M1I|C Chain C, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 1049
Score = 26.9 bits (58), Expect = 4.4, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 17 ETPNHMLHLARLLRDFGMNPYEFNDELPPPASKAFVKSL 55
E P H + +LL+ + ELPP A K FV ++
Sbjct: 816 EYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAI 854
>pdb|4FYE|A Chain A, Crystal Structure Of A Legionella Phosphoinositide
Phosphatase, Sidf
pdb|4FYF|A Chain A, Structural Basis For Substrate Recognition By A Novel
Legionella Phosphoinositide Phosphatase
pdb|4FYG|A Chain A, Structural Basis For Substrate Recognition By A Novel
Legionella Phosphoinositide Phosphatase
Length = 761
Score = 26.6 bits (57), Expect = 4.7, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 36 PYEFN-DELPPPASKAFVKSLQEVTSHEPESSCPICLKLFLVGESAKKLDCKHTF 89
P E+ DELPP A KA + ++ H P S ++ G+ + K F
Sbjct: 323 PEEYRPDELPPDAEKARAQLIKLYVEHNPLSVTECYTQVVTAGQRVAAENQKEQF 377
>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
Length = 115
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 64 ESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTS-TCPLCRHEFKT 113
E C IC+++ + L C HT C +EK S CP CR +
Sbjct: 15 ECQCGICMEILV---EPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 25.8 bits (55), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 67 CPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLC 107
C IC + F + + C H + S CI +L + CP C
Sbjct: 25 CGICFEYFNIAMIIPQ--CSHNYCSLCIRKFLSYKTQCPTC 63
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,427,336
Number of Sequences: 62578
Number of extensions: 163333
Number of successful extensions: 380
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 333
Number of HSP's gapped (non-prelim): 62
length of query: 144
length of database: 14,973,337
effective HSP length: 89
effective length of query: 55
effective length of database: 9,403,895
effective search space: 517214225
effective search space used: 517214225
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)