Query psy12643
Match_columns 144
No_of_seqs 126 out of 1762
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 15:52:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12643.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12643hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13639 zf-RING_2: Ring finge 99.5 2.2E-14 4.8E-19 80.3 1.7 44 65-108 1-44 (44)
2 KOG4628|consensus 99.3 9.3E-13 2E-17 102.3 3.9 72 46-117 206-283 (348)
3 KOG0317|consensus 99.2 6.1E-12 1.3E-16 94.6 3.5 60 55-117 230-289 (293)
4 KOG0823|consensus 99.2 1.4E-11 3.1E-16 90.1 3.0 55 60-117 43-100 (230)
5 PHA02929 N1R/p28-like protein; 99.2 2.7E-11 5.8E-16 90.3 4.3 51 62-112 172-227 (238)
6 PF12678 zf-rbx1: RING-H2 zinc 99.1 4.1E-11 8.9E-16 74.1 3.7 46 63-108 18-73 (73)
7 PLN03208 E3 ubiquitin-protein 99.1 6.4E-11 1.4E-15 85.2 3.8 53 62-117 16-84 (193)
8 PF13920 zf-C3HC4_3: Zinc fing 99.1 9.7E-11 2.1E-15 67.2 3.3 46 64-112 2-48 (50)
9 PF15227 zf-C3HC4_4: zinc fing 99.0 1.5E-10 3.3E-15 64.0 2.9 38 67-107 1-42 (42)
10 PF13923 zf-C3HC4_2: Zinc fing 99.0 2.3E-10 5E-15 62.2 2.7 38 67-107 1-39 (39)
11 COG5540 RING-finger-containing 99.0 1.9E-10 4.1E-15 87.3 3.2 50 64-113 323-373 (374)
12 KOG0320|consensus 99.0 2E-10 4.4E-15 81.0 2.9 52 62-114 129-180 (187)
13 COG5243 HRD1 HRD ubiquitin lig 99.0 2.5E-10 5.4E-15 88.7 3.3 53 61-113 284-346 (491)
14 smart00504 Ubox Modified RING 99.0 1.2E-09 2.5E-14 65.3 4.5 51 65-118 2-52 (63)
15 TIGR00599 rad18 DNA repair pro 98.9 9E-10 2E-14 87.5 4.4 60 54-116 16-75 (397)
16 PF14634 zf-RING_5: zinc-RING 98.9 1.1E-09 2.4E-14 61.1 3.4 44 66-109 1-44 (44)
17 cd00162 RING RING-finger (Real 98.9 2.5E-09 5.4E-14 59.0 3.1 43 66-111 1-45 (45)
18 PHA02926 zinc finger-like prot 98.8 3.2E-09 7E-14 77.6 3.7 62 51-112 157-230 (242)
19 PF00097 zf-C3HC4: Zinc finger 98.8 3.5E-09 7.5E-14 58.0 2.9 38 67-107 1-41 (41)
20 KOG0287|consensus 98.8 2.1E-09 4.6E-14 82.7 1.7 57 56-115 15-71 (442)
21 PF12861 zf-Apc11: Anaphase-pr 98.8 6.1E-09 1.3E-13 65.5 3.5 50 64-113 21-83 (85)
22 COG5574 PEX10 RING-finger-cont 98.7 6.7E-09 1.5E-13 77.5 2.3 52 62-116 213-266 (271)
23 KOG0802|consensus 98.7 5.6E-09 1.2E-13 86.6 2.0 52 64-115 291-344 (543)
24 KOG2164|consensus 98.7 1.1E-08 2.4E-13 82.4 3.3 51 64-117 186-241 (513)
25 smart00184 RING Ring finger. E 98.7 2E-08 4.3E-13 53.4 3.2 38 67-107 1-39 (39)
26 COG5432 RAD18 RING-finger-cont 98.6 1.2E-08 2.5E-13 77.3 2.1 58 53-113 14-71 (391)
27 PF04564 U-box: U-box domain; 98.6 1.3E-07 2.8E-12 58.3 4.7 57 64-123 4-61 (73)
28 PF13445 zf-RING_UBOX: RING-ty 98.5 1.3E-07 2.8E-12 52.4 2.5 33 67-100 1-34 (43)
29 COG5194 APC11 Component of SCF 98.5 1.5E-07 3.3E-12 58.0 3.0 49 65-113 32-82 (88)
30 TIGR00570 cdk7 CDK-activating 98.4 5.2E-07 1.1E-11 69.5 5.1 52 64-115 3-57 (309)
31 KOG1493|consensus 98.2 2.8E-07 6E-12 56.4 0.1 50 64-113 20-82 (84)
32 KOG0978|consensus 98.2 4.9E-07 1.1E-11 76.1 1.4 49 64-115 643-692 (698)
33 KOG2177|consensus 98.2 7.6E-07 1.7E-11 67.2 1.9 45 62-109 11-55 (386)
34 PF14835 zf-RING_6: zf-RING of 98.1 1.1E-06 2.4E-11 52.3 1.4 49 64-117 7-56 (65)
35 KOG0311|consensus 98.1 3.2E-07 7E-12 71.2 -1.2 48 63-113 42-91 (381)
36 KOG0828|consensus 98.1 1.2E-06 2.7E-11 70.6 1.8 50 64-113 571-635 (636)
37 KOG0824|consensus 98.1 2.3E-06 5.1E-11 65.2 2.8 59 63-124 6-65 (324)
38 PF11793 FANCL_C: FANCL C-term 98.0 1.8E-06 3.9E-11 52.9 1.2 50 64-113 2-67 (70)
39 smart00744 RINGv The RING-vari 98.0 6.6E-06 1.4E-10 46.8 3.3 42 66-108 1-49 (49)
40 KOG1734|consensus 98.0 1.6E-06 3.5E-11 65.2 0.6 51 62-112 222-281 (328)
41 KOG4265|consensus 98.0 5.6E-06 1.2E-10 64.5 2.8 48 63-113 289-337 (349)
42 KOG0804|consensus 97.9 4.7E-06 1E-10 66.6 2.1 50 61-112 172-222 (493)
43 COG5152 Uncharacterized conser 97.9 1.2E-05 2.5E-10 58.2 2.9 57 64-123 196-252 (259)
44 COG5219 Uncharacterized conser 97.8 5.4E-06 1.2E-10 71.5 1.2 51 63-113 1468-1524(1525)
45 KOG4159|consensus 97.8 2.9E-05 6.3E-10 62.1 5.1 49 62-113 82-130 (398)
46 KOG4172|consensus 97.8 5.8E-06 1.3E-10 47.4 0.5 48 63-113 6-55 (62)
47 KOG0827|consensus 97.8 1E-05 2.2E-10 63.7 2.0 48 64-111 4-55 (465)
48 KOG2930|consensus 97.8 1.5E-05 3.2E-10 51.6 2.2 29 84-112 80-108 (114)
49 KOG1039|consensus 97.6 3.4E-05 7.3E-10 60.6 2.5 50 62-111 159-220 (344)
50 KOG1813|consensus 97.6 3.5E-05 7.6E-10 58.7 2.5 61 64-127 241-301 (313)
51 KOG2660|consensus 97.5 5E-05 1.1E-09 58.7 2.2 50 63-114 14-63 (331)
52 KOG4445|consensus 97.4 1.9E-05 4.2E-10 60.3 -1.0 54 64-117 115-191 (368)
53 KOG1645|consensus 97.4 0.00028 6.1E-09 56.1 5.0 51 63-113 3-57 (463)
54 KOG0297|consensus 97.4 8.9E-05 1.9E-09 59.5 2.2 54 62-118 19-73 (391)
55 KOG1785|consensus 97.4 7.1E-05 1.5E-09 59.4 1.3 51 64-117 369-421 (563)
56 KOG2879|consensus 97.3 0.00019 4.1E-09 54.3 3.0 49 61-112 236-287 (298)
57 KOG0825|consensus 97.3 5.9E-05 1.3E-09 64.2 0.0 51 64-114 123-173 (1134)
58 KOG1002|consensus 97.3 0.00015 3.1E-09 59.6 2.2 84 18-114 500-588 (791)
59 PF11789 zf-Nse: Zinc-finger o 97.1 0.0004 8.6E-09 40.7 2.2 42 62-106 9-53 (57)
60 COG5175 MOT2 Transcriptional r 97.1 0.00057 1.2E-08 53.3 3.5 52 64-115 14-67 (480)
61 COG5222 Uncharacterized conser 97.0 0.001 2.3E-08 51.1 4.2 43 64-109 274-318 (427)
62 PF14570 zf-RING_4: RING/Ubox 96.9 0.0011 2.4E-08 37.3 2.8 44 67-111 1-47 (48)
63 KOG4692|consensus 96.9 0.0012 2.6E-08 51.9 3.6 49 62-113 420-468 (489)
64 KOG1941|consensus 96.8 0.00045 9.7E-09 54.8 1.1 46 64-109 365-413 (518)
65 KOG1428|consensus 96.8 0.0024 5.1E-08 58.2 5.5 53 62-114 3484-3546(3738)
66 KOG1814|consensus 96.7 0.0056 1.2E-07 48.9 6.1 35 64-99 184-219 (445)
67 KOG4275|consensus 96.4 0.00034 7.3E-09 53.5 -1.9 42 64-112 300-342 (350)
68 KOG4185|consensus 96.4 0.0036 7.8E-08 48.2 3.7 62 64-125 3-68 (296)
69 PF04641 Rtf2: Rtf2 RING-finge 96.3 0.0056 1.2E-07 46.6 4.1 55 62-117 111-166 (260)
70 KOG4739|consensus 96.3 0.0015 3.3E-08 48.6 0.7 49 66-117 5-53 (233)
71 PF14447 Prok-RING_4: Prokaryo 96.2 0.0026 5.6E-08 36.8 1.4 45 65-114 8-52 (55)
72 KOG3039|consensus 96.2 0.005 1.1E-07 46.2 3.1 55 63-117 220-275 (303)
73 KOG0826|consensus 96.1 0.0068 1.5E-07 47.1 3.5 50 62-114 298-348 (357)
74 KOG2114|consensus 96.0 0.013 2.8E-07 50.7 5.2 43 64-111 840-882 (933)
75 PF07800 DUF1644: Protein of u 96.0 0.0076 1.7E-07 42.3 3.1 53 64-119 2-98 (162)
76 PHA02862 5L protein; Provision 95.9 0.0064 1.4E-07 42.0 2.5 46 64-113 2-54 (156)
77 KOG3970|consensus 95.9 0.012 2.7E-07 43.6 4.1 50 64-114 50-107 (299)
78 PHA02825 LAP/PHD finger-like p 95.9 0.01 2.2E-07 41.7 3.3 48 62-113 6-60 (162)
79 PF12906 RINGv: RING-variant d 95.8 0.0074 1.6E-07 33.8 2.1 40 67-107 1-47 (47)
80 PF08746 zf-RING-like: RING-li 95.8 0.0064 1.4E-07 33.5 1.8 41 67-107 1-43 (43)
81 KOG3268|consensus 95.8 0.0066 1.4E-07 43.5 2.2 31 84-114 189-230 (234)
82 PF10367 Vps39_2: Vacuolar sor 95.7 0.0039 8.5E-08 40.5 0.8 33 62-95 76-108 (109)
83 PF05290 Baculo_IE-1: Baculovi 95.6 0.012 2.5E-07 40.2 2.8 50 63-115 79-135 (140)
84 COG5236 Uncharacterized conser 95.6 0.011 2.5E-07 46.4 3.1 47 62-111 59-107 (493)
85 PF03854 zf-P11: P-11 zinc fin 95.5 0.0052 1.1E-07 34.3 0.6 43 66-113 4-47 (50)
86 PF05883 Baculo_RING: Baculovi 95.4 0.0068 1.5E-07 41.4 1.1 36 64-99 26-67 (134)
87 KOG1571|consensus 95.4 0.0081 1.7E-07 47.2 1.6 43 64-112 305-347 (355)
88 KOG3800|consensus 95.3 0.038 8.3E-07 42.4 5.0 51 66-116 2-55 (300)
89 KOG2817|consensus 95.3 0.012 2.7E-07 46.8 2.4 46 64-109 334-382 (394)
90 KOG1940|consensus 94.9 0.02 4.4E-07 43.8 2.5 53 64-117 158-211 (276)
91 PHA03096 p28-like protein; Pro 94.8 0.019 4E-07 44.3 2.0 45 65-109 179-231 (284)
92 KOG1952|consensus 94.7 0.017 3.7E-07 50.0 1.8 48 62-109 189-244 (950)
93 KOG1001|consensus 94.6 0.019 4.2E-07 49.2 1.8 45 65-113 455-501 (674)
94 KOG0801|consensus 94.5 0.011 2.4E-07 41.6 0.1 30 62-91 175-204 (205)
95 KOG4367|consensus 94.0 0.034 7.5E-07 45.1 2.0 35 62-99 2-36 (699)
96 KOG1812|consensus 93.3 0.15 3.2E-06 41.1 4.6 81 62-142 144-234 (384)
97 KOG2034|consensus 92.7 0.064 1.4E-06 46.8 1.8 37 62-99 815-851 (911)
98 PF10272 Tmpp129: Putative tra 92.6 0.074 1.6E-06 42.3 1.9 32 85-116 311-355 (358)
99 KOG3002|consensus 92.4 0.11 2.4E-06 40.4 2.6 46 63-113 47-92 (299)
100 KOG0298|consensus 91.2 0.16 3.5E-06 46.1 2.5 47 64-113 1153-1200(1394)
101 COG5220 TFB3 Cdk activating ki 91.0 0.11 2.5E-06 39.0 1.2 46 64-109 10-61 (314)
102 KOG0827|consensus 90.9 0.023 5.1E-07 45.2 -2.5 57 64-120 196-253 (465)
103 KOG0309|consensus 90.4 0.18 4E-06 43.6 2.1 42 64-106 1028-1069(1081)
104 KOG1100|consensus 90.1 0.13 2.8E-06 38.0 0.9 40 67-113 161-201 (207)
105 PF14446 Prok-RING_1: Prokaryo 90.0 0.34 7.4E-06 27.9 2.4 33 64-96 5-38 (54)
106 KOG2932|consensus 89.6 0.18 3.8E-06 39.3 1.3 42 66-111 92-133 (389)
107 KOG3899|consensus 88.0 0.27 5.8E-06 38.0 1.3 31 85-115 325-368 (381)
108 COG5183 SSM4 Protein involved 87.2 0.28 6.1E-06 42.8 1.1 56 61-117 9-71 (1175)
109 KOG3113|consensus 87.0 2.3 5E-05 32.3 5.7 52 64-117 111-163 (293)
110 COG5109 Uncharacterized conser 86.6 0.45 9.9E-06 37.2 1.9 46 64-109 336-384 (396)
111 KOG3053|consensus 83.9 0.7 1.5E-05 35.1 1.7 54 59-112 15-82 (293)
112 KOG3579|consensus 83.6 0.67 1.4E-05 35.8 1.5 50 62-112 266-328 (352)
113 KOG4362|consensus 83.1 0.33 7.2E-06 41.6 -0.3 47 64-113 21-70 (684)
114 KOG3161|consensus 82.0 0.59 1.3E-05 39.9 0.8 40 64-105 11-51 (861)
115 KOG4718|consensus 81.4 1.1 2.4E-05 33.1 1.9 47 64-112 181-227 (235)
116 KOG3799|consensus 80.5 0.49 1.1E-05 32.5 -0.1 52 59-110 60-116 (169)
117 KOG3039|consensus 80.3 1.9 4.2E-05 32.7 2.9 34 63-99 42-75 (303)
118 KOG3005|consensus 78.3 1.5 3.3E-05 33.5 1.9 49 64-112 182-243 (276)
119 KOG1609|consensus 78.0 1.5 3.3E-05 33.6 1.9 51 64-114 78-136 (323)
120 KOG0269|consensus 77.7 2.6 5.7E-05 36.7 3.3 44 64-110 779-826 (839)
121 KOG1815|consensus 76.1 2 4.3E-05 35.3 2.1 37 61-99 67-103 (444)
122 KOG2068|consensus 75.7 2.2 4.8E-05 33.5 2.2 51 64-114 249-300 (327)
123 PF02891 zf-MIZ: MIZ/SP-RING z 75.7 2.7 5.8E-05 23.7 2.0 42 65-110 3-50 (50)
124 KOG0825|consensus 72.0 1.9 4.1E-05 37.9 1.1 52 64-115 96-157 (1134)
125 KOG1812|consensus 69.9 2.4 5.2E-05 34.2 1.2 44 64-107 306-351 (384)
126 KOG1829|consensus 67.1 2.3 5E-05 36.1 0.6 22 83-107 535-556 (580)
127 PF07975 C1_4: TFIIH C1-like d 62.4 5.8 0.00013 22.6 1.5 25 84-108 26-50 (51)
128 PF04423 Rad50_zn_hook: Rad50 61.9 6.3 0.00014 22.3 1.6 13 103-115 22-34 (54)
129 KOG3842|consensus 59.0 9 0.0002 30.2 2.5 50 64-113 341-415 (429)
130 PF06906 DUF1272: Protein of u 58.1 16 0.00034 21.2 2.8 46 65-112 6-52 (57)
131 smart00249 PHD PHD zinc finger 56.0 8.7 0.00019 20.1 1.5 29 67-96 2-31 (47)
132 PF01363 FYVE: FYVE zinc finge 54.4 6.7 0.00015 23.1 0.9 34 63-96 8-42 (69)
133 PF00628 PHD: PHD-finger; Int 53.6 7.4 0.00016 21.4 1.0 42 66-108 1-49 (51)
134 PF05605 zf-Di19: Drought indu 53.2 5.9 0.00013 22.4 0.5 11 64-74 2-12 (54)
135 PF04216 FdhE: Protein involve 53.0 1.4 3E-05 34.0 -2.8 47 63-112 171-222 (290)
136 PF04710 Pellino: Pellino; In 52.5 4.6 0.0001 32.6 0.0 31 83-113 363-402 (416)
137 PF13901 DUF4206: Domain of un 50.7 13 0.00027 27.2 2.0 40 64-108 152-196 (202)
138 KOG2807|consensus 50.2 11 0.00025 29.8 1.8 43 66-108 332-374 (378)
139 smart00132 LIM Zinc-binding do 48.8 10 0.00023 18.9 1.0 36 67-111 2-37 (39)
140 KOG2789|consensus 48.2 35 0.00075 27.9 4.2 32 64-98 74-107 (482)
141 PF07191 zinc-ribbons_6: zinc- 48.2 1.3 2.7E-05 27.0 -2.9 39 65-111 2-40 (70)
142 PF00412 LIM: LIM domain; Int 46.8 8.1 0.00017 21.7 0.4 40 67-115 1-40 (58)
143 PF09889 DUF2116: Uncharacteri 46.6 59 0.0013 19.0 4.2 17 101-117 3-19 (59)
144 cd00065 FYVE FYVE domain; Zinc 46.5 16 0.00034 20.5 1.6 34 65-98 3-37 (57)
145 KOG4185|consensus 44.9 4.2 9E-05 31.2 -1.3 47 64-110 207-265 (296)
146 PF06844 DUF1244: Protein of u 44.8 14 0.0003 22.2 1.2 12 88-99 11-22 (68)
147 KOG2066|consensus 44.6 9 0.0002 33.7 0.5 44 64-108 784-831 (846)
148 KOG2231|consensus 44.0 18 0.00039 31.4 2.2 43 66-111 2-51 (669)
149 PF14569 zf-UDP: Zinc-binding 43.9 39 0.00084 21.0 3.1 51 63-113 8-63 (80)
150 PF06750 DiS_P_DiS: Bacterial 43.4 26 0.00057 22.3 2.4 44 64-119 33-76 (92)
151 KOG2071|consensus 42.5 13 0.00029 31.6 1.2 45 54-98 502-557 (579)
152 COG4847 Uncharacterized protei 41.8 29 0.00064 22.4 2.4 35 64-99 6-40 (103)
153 KOG0824|consensus 41.0 24 0.00052 27.6 2.3 47 62-111 103-150 (324)
154 PF14353 CpXC: CpXC protein 40.8 22 0.00048 23.7 1.9 46 65-113 2-50 (128)
155 TIGR01562 FdhE formate dehydro 40.6 7.4 0.00016 30.5 -0.5 45 64-110 184-233 (305)
156 smart00064 FYVE Protein presen 38.8 30 0.00065 20.2 2.1 36 64-99 10-46 (68)
157 KOG0802|consensus 37.1 18 0.00038 30.5 1.2 44 64-114 479-522 (543)
158 PF02318 FYVE_2: FYVE-type zin 36.8 17 0.00037 24.1 0.9 46 63-109 53-102 (118)
159 PRK03564 formate dehydrogenase 36.7 14 0.00031 29.0 0.5 45 63-109 186-234 (309)
160 PLN02195 cellulose synthase A 36.4 32 0.0007 31.2 2.7 48 64-112 6-59 (977)
161 PRK11088 rrmA 23S rRNA methylt 36.1 26 0.00055 26.5 1.8 25 65-89 3-27 (272)
162 PF13719 zinc_ribbon_5: zinc-r 35.1 25 0.00055 18.2 1.2 12 65-76 3-14 (37)
163 PF10497 zf-4CXXC_R1: Zinc-fin 34.7 76 0.0016 20.7 3.6 24 86-109 37-69 (105)
164 KOG2068|consensus 33.8 23 0.00051 28.0 1.3 27 100-126 18-44 (327)
165 PF14311 DUF4379: Domain of un 33.6 28 0.0006 19.6 1.3 22 85-107 34-55 (55)
166 PF09297 zf-NADH-PPase: NADH p 32.8 4.9 0.00011 20.2 -1.8 23 87-109 3-29 (32)
167 TIGR00622 ssl1 transcription f 32.4 50 0.0011 22.0 2.5 45 64-108 55-110 (112)
168 PLN02189 cellulose synthase 32.3 44 0.00095 30.6 2.8 49 64-112 34-87 (1040)
169 PF10571 UPF0547: Uncharacteri 31.4 12 0.00027 18.0 -0.4 6 67-72 3-8 (26)
170 PF10146 zf-C4H2: Zinc finger- 31.1 41 0.00088 25.3 2.1 27 87-113 194-220 (230)
171 PF13248 zf-ribbon_3: zinc-rib 30.9 8.7 0.00019 18.3 -1.0 7 103-109 18-24 (26)
172 PF13832 zf-HC5HC2H_2: PHD-zin 30.6 41 0.00089 21.6 1.9 33 62-96 53-87 (110)
173 PF13771 zf-HC5HC2H: PHD-like 30.4 17 0.00037 22.4 0.0 36 61-96 33-68 (90)
174 KOG4451|consensus 30.1 41 0.00089 25.4 1.9 26 88-113 250-275 (286)
175 COG4647 AcxC Acetone carboxyla 29.4 29 0.00062 23.8 1.0 21 69-92 62-82 (165)
176 PLN02638 cellulose synthase A 29.2 52 0.0011 30.3 2.8 48 64-112 17-70 (1079)
177 PF12773 DZR: Double zinc ribb 29.1 45 0.00097 18.1 1.6 12 101-112 29-40 (50)
178 KOG2857|consensus 28.6 29 0.00064 24.1 0.9 11 64-74 5-15 (157)
179 PLN02436 cellulose synthase A 28.6 54 0.0012 30.2 2.8 49 64-112 36-89 (1094)
180 PF13717 zinc_ribbon_4: zinc-r 27.9 34 0.00075 17.6 0.9 13 65-77 3-15 (36)
181 PF11023 DUF2614: Protein of u 27.8 27 0.00059 23.2 0.6 18 97-114 81-98 (114)
182 KOG4218|consensus 27.3 50 0.0011 26.5 2.1 22 64-86 15-36 (475)
183 PF09943 DUF2175: Uncharacteri 26.7 55 0.0012 21.4 1.9 34 65-99 3-36 (101)
184 KOG3726|consensus 26.6 36 0.00079 29.6 1.3 42 64-108 654-696 (717)
185 PRK00420 hypothetical protein; 26.2 52 0.0011 21.9 1.8 16 100-115 39-54 (112)
186 COG0068 HypF Hydrogenase matur 25.9 54 0.0012 28.9 2.2 51 61-111 98-183 (750)
187 TIGR00373 conserved hypothetic 24.7 1.2E+02 0.0025 21.3 3.4 19 97-115 124-142 (158)
188 KOG2113|consensus 24.6 61 0.0013 25.7 2.1 42 64-110 343-385 (394)
189 PF07649 C1_3: C1-like domain; 24.5 62 0.0013 15.7 1.5 29 66-94 2-30 (30)
190 PLN02248 cellulose synthase-li 23.4 78 0.0017 29.4 2.8 33 84-116 149-181 (1135)
191 PRK04023 DNA polymerase II lar 22.8 80 0.0017 29.1 2.7 61 58-123 620-685 (1121)
192 PRK01343 zinc-binding protein; 22.8 52 0.0011 19.1 1.1 13 100-112 8-20 (57)
193 PF14445 Prok-RING_2: Prokaryo 22.6 8 0.00017 22.0 -2.2 43 64-109 7-49 (57)
194 COG3492 Uncharacterized protei 22.5 51 0.0011 21.1 1.1 12 88-99 42-53 (104)
195 COG3813 Uncharacterized protei 22.0 1.2E+02 0.0027 18.5 2.7 26 86-113 28-53 (84)
196 COG4098 comFA Superfamily II D 21.0 40 0.00087 27.3 0.5 38 55-95 30-68 (441)
197 PF13834 DUF4193: Domain of un 20.9 41 0.00088 21.9 0.5 34 56-93 62-98 (99)
198 PRK08351 DNA-directed RNA poly 20.8 58 0.0013 19.2 1.1 17 100-116 14-30 (61)
199 smart00734 ZnF_Rad18 Rad18-lik 20.8 47 0.001 15.8 0.6 9 103-111 3-11 (26)
200 KOG2169|consensus 20.8 78 0.0017 27.4 2.3 57 64-123 306-367 (636)
201 PLN02400 cellulose synthase 20.5 74 0.0016 29.4 2.1 48 64-112 36-89 (1085)
No 1
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.46 E-value=2.2e-14 Score=80.31 Aligned_cols=44 Identities=50% Similarity=1.210 Sum_probs=39.5
Q ss_pred cccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccc
Q psy12643 65 SSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCR 108 (144)
Q Consensus 65 ~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr 108 (144)
+.|+||++.+..+...+.++|+|.||..||.+|+..+.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 47999999998778888999999999999999999889999997
No 2
>KOG4628|consensus
Probab=99.33 E-value=9.3e-13 Score=102.26 Aligned_cols=72 Identities=36% Similarity=0.797 Sum_probs=54.7
Q ss_pred CCcHHHHHhhccccCCCc-----ccccccccccccCCCceeecCCCCcchHhhHHHHhhCCCC-ccccccccCCCChh
Q psy12643 46 PASKAFVKSLQEVTSHEP-----ESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTST-CPLCRHEFKTDDAD 117 (144)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~-----~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~-CP~Cr~~~~~~~~~ 117 (144)
...+..+..++....... ...|+||+|.|.+|+..+.|||+|.||..||..|+...++ ||+|++.+......
T Consensus 206 r~~k~~l~~~p~~~f~~~~~~~~~~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~~~ 283 (348)
T KOG4628|consen 206 RLIKRLLKKLPVRTFTKGDDEDATDTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDSGS 283 (348)
T ss_pred hhHHHHHhhCCcEEeccccccCCCceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCCCCC
Confidence 344455555553333222 1399999999999999999999999999999999997754 99999987655443
No 3
>KOG0317|consensus
Probab=99.23 E-value=6.1e-12 Score=94.63 Aligned_cols=60 Identities=28% Similarity=0.671 Sum_probs=51.7
Q ss_pred hccccCCCcccccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccCCCChh
Q psy12643 55 LQEVTSHEPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTDDAD 117 (144)
Q Consensus 55 ~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 117 (144)
.......+....|.+|++.. ..+..+||||.||..||..|......||+||..+...+.+
T Consensus 230 ~~~~~i~~a~~kC~LCLe~~---~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~pskvi 289 (293)
T KOG0317|consen 230 NSLSSIPEATRKCSLCLENR---SNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQPSKVI 289 (293)
T ss_pred cCCccCCCCCCceEEEecCC---CCCCcCcCcchHHHHHHHHHHccccCCCcccccCCCccee
Confidence 34445556689999999987 8889999999999999999999999999999999877655
No 4
>KOG0823|consensus
Probab=99.17 E-value=1.4e-11 Score=90.13 Aligned_cols=55 Identities=29% Similarity=0.670 Sum_probs=47.6
Q ss_pred CCCcccccccccccccCCCceeecCCCCcchHhhHHHHhh---CCCCccccccccCCCChh
Q psy12643 60 SHEPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLE---KTSTCPLCRHEFKTDDAD 117 (144)
Q Consensus 60 ~~~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~---~~~~CP~Cr~~~~~~~~~ 117 (144)
.....+.|.||++.. ..++++.|||.||+.||.+|+. ....||+|+..+..++.+
T Consensus 43 ~~~~~FdCNICLd~a---kdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vv 100 (230)
T KOG0823|consen 43 RDGGFFDCNICLDLA---KDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVV 100 (230)
T ss_pred CCCCceeeeeecccc---CCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEE
Confidence 355689999999988 8899999999999999999998 344689999999887766
No 5
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.17 E-value=2.7e-11 Score=90.29 Aligned_cols=51 Identities=31% Similarity=0.760 Sum_probs=41.3
Q ss_pred CcccccccccccccCCCc-----eeecCCCCcchHhhHHHHhhCCCCccccccccC
Q psy12643 62 EPESSCPICLKLFLVGES-----AKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFK 112 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~-----~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~ 112 (144)
..+.+|+||++.+..... .+.++|+|.||..||..|+..+.+||+||..+.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 347899999998743221 244579999999999999999999999999875
No 6
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.14 E-value=4.1e-11 Score=74.12 Aligned_cols=46 Identities=37% Similarity=0.814 Sum_probs=35.8
Q ss_pred cccccccccccccCC----------CceeecCCCCcchHhhHHHHhhCCCCccccc
Q psy12643 63 PESSCPICLKLFLVG----------ESAKKLDCKHTFHSTCILPWLEKTSTCPLCR 108 (144)
Q Consensus 63 ~~~~C~IC~~~~~~~----------~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr 108 (144)
.++.|+||++.+... ......+|||.||..||.+|+....+||+||
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 355699999998322 2234457999999999999999999999997
No 7
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.11 E-value=6.4e-11 Score=85.21 Aligned_cols=53 Identities=25% Similarity=0.591 Sum_probs=43.6
Q ss_pred CcccccccccccccCCCceeecCCCCcchHhhHHHHhhC----------------CCCccccccccCCCChh
Q psy12643 62 EPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEK----------------TSTCPLCRHEFKTDDAD 117 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~----------------~~~CP~Cr~~~~~~~~~ 117 (144)
.+..+|+||++.+ ..+++++|||.||..||..|+.. ...||+||..+...+..
T Consensus 16 ~~~~~CpICld~~---~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~Lv 84 (193)
T PLN03208 16 GGDFDCNICLDQV---RDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLV 84 (193)
T ss_pred CCccCCccCCCcC---CCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEE
Confidence 3478999999988 77888999999999999999852 24699999998765443
No 8
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.09 E-value=9.7e-11 Score=67.17 Aligned_cols=46 Identities=30% Similarity=0.804 Sum_probs=40.2
Q ss_pred ccccccccccccCCCceeecCCCCc-chHhhHHHHhhCCCCccccccccC
Q psy12643 64 ESSCPICLKLFLVGESAKKLDCKHT-FHSTCILPWLEKTSTCPLCRHEFK 112 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~C~h~-f~~~Ci~~~~~~~~~CP~Cr~~~~ 112 (144)
+..|.||++.. ...+.++|||. ||..|+.+|+.....||+||+++.
T Consensus 2 ~~~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENP---RDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSB---SSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccC---CceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 57899999987 77888899999 999999999999999999999875
No 9
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.05 E-value=1.5e-10 Score=63.99 Aligned_cols=38 Identities=39% Similarity=1.024 Sum_probs=30.0
Q ss_pred cccccccccCCCceeecCCCCcchHhhHHHHhhCC----CCcccc
Q psy12643 67 CPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKT----STCPLC 107 (144)
Q Consensus 67 C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~----~~CP~C 107 (144)
|+||++.| ..++.++|||.||..||.+|+... ..||.|
T Consensus 1 CpiC~~~~---~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLF---KDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB----SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhh---CCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999 899999999999999999999733 368887
No 10
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.01 E-value=2.3e-10 Score=62.24 Aligned_cols=38 Identities=42% Similarity=1.035 Sum_probs=32.3
Q ss_pred cccccccccCCCce-eecCCCCcchHhhHHHHhhCCCCcccc
Q psy12643 67 CPICLKLFLVGESA-KKLDCKHTFHSTCILPWLEKTSTCPLC 107 (144)
Q Consensus 67 C~IC~~~~~~~~~~-~~~~C~h~f~~~Ci~~~~~~~~~CP~C 107 (144)
|+||++.+ ..+ +.++|||.||..|+..|+.....||+|
T Consensus 1 C~iC~~~~---~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDEL---RDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB----SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcc---cCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 78999988 556 678999999999999999988899987
No 11
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=1.9e-10 Score=87.26 Aligned_cols=50 Identities=32% Similarity=0.876 Sum_probs=46.0
Q ss_pred ccccccccccccCCCceeecCCCCcchHhhHHHHhh-CCCCccccccccCC
Q psy12643 64 ESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLE-KTSTCPLCRHEFKT 113 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~-~~~~CP~Cr~~~~~ 113 (144)
.-+|+||++.+..++..+.+||.|.||..|+..|+. .+..||+||..++.
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 678999999998888899999999999999999998 77889999998874
No 12
>KOG0320|consensus
Probab=99.01 E-value=2e-10 Score=81.00 Aligned_cols=52 Identities=35% Similarity=0.714 Sum_probs=43.0
Q ss_pred CcccccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccCCC
Q psy12643 62 EPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTD 114 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 114 (144)
+..+.|+||++.+.+ ..++.+.|||.||..||...++....||+|++.+..+
T Consensus 129 ~~~~~CPiCl~~~se-k~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSE-KVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHK 180 (187)
T ss_pred ccccCCCceecchhh-ccccccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence 346889999999843 3335578999999999999999999999999877643
No 13
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=2.5e-10 Score=88.74 Aligned_cols=53 Identities=32% Similarity=0.862 Sum_probs=44.1
Q ss_pred CCcccccccccccccC-C---------CceeecCCCCcchHhhHHHHhhCCCCccccccccCC
Q psy12643 61 HEPESSCPICLKLFLV-G---------ESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKT 113 (144)
Q Consensus 61 ~~~~~~C~IC~~~~~~-~---------~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 113 (144)
..++..|.||++++-+ + ..+.++||||.+|.+|+..|+.++.+||.||.++..
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~if 346 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVIF 346 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcccc
Confidence 3458899999998522 2 245788999999999999999999999999999543
No 14
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.96 E-value=1.2e-09 Score=65.31 Aligned_cols=51 Identities=24% Similarity=0.406 Sum_probs=44.4
Q ss_pred cccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccCCCChhH
Q psy12643 65 SSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTDDADY 118 (144)
Q Consensus 65 ~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 118 (144)
..|+||.+.+ ..++.++|||.|+..||..|+.....||.|+..+..++...
T Consensus 2 ~~Cpi~~~~~---~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~ 52 (63)
T smart00504 2 FLCPISLEVM---KDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIP 52 (63)
T ss_pred cCCcCCCCcC---CCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhcee
Confidence 5799999999 66888999999999999999998889999999986655443
No 15
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.93 E-value=9e-10 Score=87.53 Aligned_cols=60 Identities=30% Similarity=0.641 Sum_probs=50.1
Q ss_pred hhccccCCCcccccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccCCCCh
Q psy12643 54 SLQEVTSHEPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTDDA 116 (144)
Q Consensus 54 ~~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 116 (144)
.++.+........|+||.+.+ ..+++++|||.||..||..|+.....||+|+..+.....
T Consensus 16 ~~~~l~~Le~~l~C~IC~d~~---~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~L 75 (397)
T TIGR00599 16 PIPSLYPLDTSLRCHICKDFF---DVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKL 75 (397)
T ss_pred CcccccccccccCCCcCchhh---hCccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccccC
Confidence 344555566689999999999 677789999999999999999988889999998876543
No 16
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.93 E-value=1.1e-09 Score=61.11 Aligned_cols=44 Identities=27% Similarity=0.757 Sum_probs=37.9
Q ss_pred ccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCcccccc
Q psy12643 66 SCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRH 109 (144)
Q Consensus 66 ~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~ 109 (144)
.|+||.+.+.....+.+++|||.||..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 48999999955567888899999999999998866778999985
No 17
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.85 E-value=2.5e-09 Score=58.97 Aligned_cols=43 Identities=47% Similarity=1.098 Sum_probs=35.1
Q ss_pred ccccccccccCCCceeec-CCCCcchHhhHHHHhhC-CCCcccccccc
Q psy12643 66 SCPICLKLFLVGESAKKL-DCKHTFHSTCILPWLEK-TSTCPLCRHEF 111 (144)
Q Consensus 66 ~C~IC~~~~~~~~~~~~~-~C~h~f~~~Ci~~~~~~-~~~CP~Cr~~~ 111 (144)
.|+||++.+ .....+ +|+|.||..|+..|+.. ...||.|+..+
T Consensus 1 ~C~iC~~~~---~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF---REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh---hCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 489999887 444444 59999999999999986 77899998753
No 18
>PHA02926 zinc finger-like protein; Provisional
Probab=98.82 E-value=3.2e-09 Score=77.59 Aligned_cols=62 Identities=27% Similarity=0.665 Sum_probs=44.0
Q ss_pred HHHhhccccCCCcccccccccccccCC-----Cceee-cCCCCcchHhhHHHHhhC------CCCccccccccC
Q psy12643 51 FVKSLQEVTSHEPESSCPICLKLFLVG-----ESAKK-LDCKHTFHSTCILPWLEK------TSTCPLCRHEFK 112 (144)
Q Consensus 51 ~~~~~~~~~~~~~~~~C~IC~~~~~~~-----~~~~~-~~C~h~f~~~Ci~~~~~~------~~~CP~Cr~~~~ 112 (144)
.+.....+...+.+.+|+||++..-.. ....+ .+|+|.||..||..|... ...||.||..+.
T Consensus 157 il~~ye~~~~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 157 ILDKYEDVYRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred HHHHHHHHHhccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 334445555566689999999875221 11233 479999999999999973 245999999775
No 19
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.82 E-value=3.5e-09 Score=58.03 Aligned_cols=38 Identities=50% Similarity=1.219 Sum_probs=33.0
Q ss_pred cccccccccCCCcee-ecCCCCcchHhhHHHHhh--CCCCcccc
Q psy12643 67 CPICLKLFLVGESAK-KLDCKHTFHSTCILPWLE--KTSTCPLC 107 (144)
Q Consensus 67 C~IC~~~~~~~~~~~-~~~C~h~f~~~Ci~~~~~--~~~~CP~C 107 (144)
|+||++.+ ..+. .++|+|.||..|+.+|+. ....||.|
T Consensus 1 C~iC~~~~---~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPF---EDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBC---SSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccc---cCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 78999998 5555 789999999999999998 56679987
No 20
>KOG0287|consensus
Probab=98.78 E-value=2.1e-09 Score=82.74 Aligned_cols=57 Identities=28% Similarity=0.607 Sum_probs=48.5
Q ss_pred ccccCCCcccccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccCCCC
Q psy12643 56 QEVTSHEPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTDD 115 (144)
Q Consensus 56 ~~~~~~~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 115 (144)
+.+....+-..|.||.++| ..++++||+|.||..||..++..+..||+|+.++....
T Consensus 15 pslk~lD~lLRC~IC~eyf---~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~ 71 (442)
T KOG0287|consen 15 PSLKTLDDLLRCGICFEYF---NIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESD 71 (442)
T ss_pred chhhhhHHHHHHhHHHHHh---cCceeccccchHHHHHHHHHhccCCCCCceecccchhh
Confidence 3344444578899999999 88999999999999999999999999999999887543
No 21
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.78 E-value=6.1e-09 Score=65.49 Aligned_cols=50 Identities=36% Similarity=0.861 Sum_probs=38.1
Q ss_pred ccccccccccccCC--------C-ceeec-CCCCcchHhhHHHHhhC---CCCccccccccCC
Q psy12643 64 ESSCPICLKLFLVG--------E-SAKKL-DCKHTFHSTCILPWLEK---TSTCPLCRHEFKT 113 (144)
Q Consensus 64 ~~~C~IC~~~~~~~--------~-~~~~~-~C~h~f~~~Ci~~~~~~---~~~CP~Cr~~~~~ 113 (144)
++.|.||...|+.. + -+.++ .|+|.||..||.+|+.. +..||.||+.+..
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 78899998888411 1 13333 59999999999999984 4579999998754
No 22
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=6.7e-09 Score=77.54 Aligned_cols=52 Identities=31% Similarity=0.689 Sum_probs=44.2
Q ss_pred CcccccccccccccCCCceeecCCCCcchHhhHHH-HhhCCCC-ccccccccCCCCh
Q psy12643 62 EPESSCPICLKLFLVGESAKKLDCKHTFHSTCILP-WLEKTST-CPLCRHEFKTDDA 116 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~-~~~~~~~-CP~Cr~~~~~~~~ 116 (144)
..++.|.||++.. ..+..++|||.||..||.. |-.++.. ||+||+....++.
T Consensus 213 ~~d~kC~lC~e~~---~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v 266 (271)
T COG5574 213 LADYKCFLCLEEP---EVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred ccccceeeeeccc---CCcccccccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence 4589999999988 8888999999999999998 7666665 9999998776554
No 23
>KOG0802|consensus
Probab=98.70 E-value=5.6e-09 Score=86.65 Aligned_cols=52 Identities=37% Similarity=0.888 Sum_probs=44.2
Q ss_pred ccccccccccccCCCc--eeecCCCCcchHhhHHHHhhCCCCccccccccCCCC
Q psy12643 64 ESSCPICLKLFLVGES--AKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTDD 115 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~--~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 115 (144)
+..|.||++.+..+.. +.+++|+|.||..|+..|+.++.+||+||..+....
T Consensus 291 ~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~~~~ 344 (543)
T KOG0802|consen 291 DELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLYDYV 344 (543)
T ss_pred CCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhhccc
Confidence 8899999999954432 788999999999999999999999999999554433
No 24
>KOG2164|consensus
Probab=98.69 E-value=1.1e-08 Score=82.42 Aligned_cols=51 Identities=31% Similarity=0.789 Sum_probs=42.4
Q ss_pred ccccccccccccCCCceeecCCCCcchHhhHHHHhhCC-----CCccccccccCCCChh
Q psy12643 64 ESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKT-----STCPLCRHEFKTDDAD 117 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~-----~~CP~Cr~~~~~~~~~ 117 (144)
+..|+||++.. ..+..+.|||+||..||..++... ..||+|+..+..+++.
T Consensus 186 ~~~CPICL~~~---~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~ 241 (513)
T KOG2164|consen 186 DMQCPICLEPP---SVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLL 241 (513)
T ss_pred CCcCCcccCCC---CcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhcccccee
Confidence 88999999887 677778899999999999998733 4699999988774443
No 25
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.69 E-value=2e-08 Score=53.42 Aligned_cols=38 Identities=47% Similarity=1.183 Sum_probs=32.9
Q ss_pred cccccccccCCCceeecCCCCcchHhhHHHHhh-CCCCcccc
Q psy12643 67 CPICLKLFLVGESAKKLDCKHTFHSTCILPWLE-KTSTCPLC 107 (144)
Q Consensus 67 C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~-~~~~CP~C 107 (144)
|+||++.. .....++|+|.||..|+..|+. ....||+|
T Consensus 1 C~iC~~~~---~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 78998875 7778889999999999999998 66679987
No 26
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.65 E-value=1.2e-08 Score=77.32 Aligned_cols=58 Identities=26% Similarity=0.508 Sum_probs=48.8
Q ss_pred HhhccccCCCcccccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccCC
Q psy12643 53 KSLQEVTSHEPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKT 113 (144)
Q Consensus 53 ~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 113 (144)
.++|.+.....-..|.||-..+ ..+..++|||.||..||..++..+..||+||.....
T Consensus 14 T~IPSL~~LDs~lrC~IC~~~i---~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 14 TKIPSLKGLDSMLRCRICDCRI---SIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred ccCcchhcchhHHHhhhhhhee---ecceecccccchhHHHHHHHhcCCCCCccccccHHh
Confidence 3445555555578899999999 888889999999999999999999999999987643
No 27
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.56 E-value=1.3e-07 Score=58.35 Aligned_cols=57 Identities=28% Similarity=0.406 Sum_probs=44.1
Q ss_pred ccccccccccccCCCceeecCCCCcchHhhHHHHhhC-CCCccccccccCCCChhHHHHHH
Q psy12643 64 ESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEK-TSTCPLCRHEFKTDDADYEAYKV 123 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~~~~ 123 (144)
.+.|+|+.+.+ ..++++++||.|...+|..|+.. ...||+|+..+...+.......+
T Consensus 4 ~f~CpIt~~lM---~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk 61 (73)
T PF04564_consen 4 EFLCPITGELM---RDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALK 61 (73)
T ss_dssp GGB-TTTSSB----SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHH
T ss_pred ccCCcCcCcHh---hCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHH
Confidence 68899999999 89999999999999999999997 88999999999877665444333
No 28
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.46 E-value=1.3e-07 Score=52.36 Aligned_cols=33 Identities=33% Similarity=0.743 Sum_probs=21.4
Q ss_pred ccccccccc-CCCceeecCCCCcchHhhHHHHhhC
Q psy12643 67 CPICLKLFL-VGESAKKLDCKHTFHSTCILPWLEK 100 (144)
Q Consensus 67 C~IC~~~~~-~~~~~~~~~C~h~f~~~Ci~~~~~~ 100 (144)
|+||.+ +. ....++.|+|||.||..|+..++..
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~ 34 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKK 34 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhc
Confidence 899999 63 3345788999999999999999883
No 29
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.46 E-value=1.5e-07 Score=58.00 Aligned_cols=49 Identities=33% Similarity=0.792 Sum_probs=35.3
Q ss_pred cccccccccccCCCce-eec-CCCCcchHhhHHHHhhCCCCccccccccCC
Q psy12643 65 SSCPICLKLFLVGESA-KKL-DCKHTFHSTCILPWLEKTSTCPLCRHEFKT 113 (144)
Q Consensus 65 ~~C~IC~~~~~~~~~~-~~~-~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 113 (144)
..|+-|+.....+++- +.. .|.|.||..||.+|+..+..||++|+++..
T Consensus 32 ~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~ 82 (88)
T COG5194 32 GTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVL 82 (88)
T ss_pred CcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEE
Confidence 3444455444344432 333 499999999999999999999999998743
No 30
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.39 E-value=5.2e-07 Score=69.48 Aligned_cols=52 Identities=19% Similarity=0.481 Sum_probs=37.7
Q ss_pred cccccccccc--ccCCCceeecCCCCcchHhhHHHHhh-CCCCccccccccCCCC
Q psy12643 64 ESSCPICLKL--FLVGESAKKLDCKHTFHSTCILPWLE-KTSTCPLCRHEFKTDD 115 (144)
Q Consensus 64 ~~~C~IC~~~--~~~~~~~~~~~C~h~f~~~Ci~~~~~-~~~~CP~Cr~~~~~~~ 115 (144)
+..|++|... +.......+.+|||.||.+|+...+. ....||.|+..+....
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 5789999983 32222223337999999999999765 5568999999886654
No 31
>KOG1493|consensus
Probab=98.21 E-value=2.8e-07 Score=56.39 Aligned_cols=50 Identities=36% Similarity=0.909 Sum_probs=37.1
Q ss_pred ccccccccccccC--------C-Cceeec-CCCCcchHhhHHHHhh---CCCCccccccccCC
Q psy12643 64 ESSCPICLKLFLV--------G-ESAKKL-DCKHTFHSTCILPWLE---KTSTCPLCRHEFKT 113 (144)
Q Consensus 64 ~~~C~IC~~~~~~--------~-~~~~~~-~C~h~f~~~Ci~~~~~---~~~~CP~Cr~~~~~ 113 (144)
++.|.||.-.|+- + +-+.++ .|.|.||..||.+|+. .+..||.||+.+..
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 5688888877732 1 223344 4999999999999997 34579999998754
No 32
>KOG0978|consensus
Probab=98.20 E-value=4.9e-07 Score=76.07 Aligned_cols=49 Identities=27% Similarity=0.687 Sum_probs=42.8
Q ss_pred ccccccccccccCCCceeecCCCCcchHhhHHHHhh-CCCCccccccccCCCC
Q psy12643 64 ESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLE-KTSTCPLCRHEFKTDD 115 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~-~~~~CP~Cr~~~~~~~ 115 (144)
-..|+.|...+ ...+++.|+|.||..|+.+... +++.||.|.+.|+..+
T Consensus 643 ~LkCs~Cn~R~---Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganD 692 (698)
T KOG0978|consen 643 LLKCSVCNTRW---KDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAND 692 (698)
T ss_pred ceeCCCccCch---hhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Confidence 78899999777 6677788999999999998776 8999999999998754
No 33
>KOG2177|consensus
Probab=98.18 E-value=7.6e-07 Score=67.17 Aligned_cols=45 Identities=38% Similarity=0.892 Sum_probs=38.7
Q ss_pred CcccccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCcccccc
Q psy12643 62 EPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRH 109 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~ 109 (144)
.+...|+||++.| ..+..++|+|.||..|+..++.....||.||.
T Consensus 11 ~~~~~C~iC~~~~---~~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYF---REPVLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHh---hcCccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 3478999999999 55588899999999999998885567999994
No 34
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.12 E-value=1.1e-06 Score=52.29 Aligned_cols=49 Identities=31% Similarity=0.718 Sum_probs=24.2
Q ss_pred ccccccccccccCCCceeec-CCCCcchHhhHHHHhhCCCCccccccccCCCChh
Q psy12643 64 ESSCPICLKLFLVGESAKKL-DCKHTFHSTCILPWLEKTSTCPLCRHEFKTDDAD 117 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~-~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 117 (144)
-..|++|...+ ..++.+ .|.|.||..||..-+. ..||+|..+.-..+..
T Consensus 7 lLrCs~C~~~l---~~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD~~ 56 (65)
T PF14835_consen 7 LLRCSICFDIL---KEPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQDIQ 56 (65)
T ss_dssp TTS-SSS-S-----SS-B---SSS--B-TTTGGGGTT--TB-SSS--B-S-SS--
T ss_pred hcCCcHHHHHh---cCCceeccCccHHHHHHhHHhcC--CCCCCcCChHHHHHHH
Confidence 56799999998 777654 6999999999976433 4599998876544433
No 35
>KOG0311|consensus
Probab=98.12 E-value=3.2e-07 Score=71.15 Aligned_cols=48 Identities=33% Similarity=0.791 Sum_probs=39.3
Q ss_pred cccccccccccccCCCceeec-CCCCcchHhhHHHHhh-CCCCccccccccCC
Q psy12643 63 PESSCPICLKLFLVGESAKKL-DCKHTFHSTCILPWLE-KTSTCPLCRHEFKT 113 (144)
Q Consensus 63 ~~~~C~IC~~~~~~~~~~~~~-~C~h~f~~~Ci~~~~~-~~~~CP~Cr~~~~~ 113 (144)
.+..|+||+..+ ...+.+ .|.|.||..||...+. ..+.||.||+.+..
T Consensus 42 ~~v~c~icl~ll---k~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~S 91 (381)
T KOG0311|consen 42 IQVICPICLSLL---KKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVS 91 (381)
T ss_pred hhhccHHHHHHH---HhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccc
Confidence 388999999998 555455 4999999999987776 67789999997744
No 36
>KOG0828|consensus
Probab=98.10 E-value=1.2e-06 Score=70.64 Aligned_cols=50 Identities=30% Similarity=0.840 Sum_probs=38.7
Q ss_pred ccccccccccccC---CC-----------ceeecCCCCcchHhhHHHHhh-CCCCccccccccCC
Q psy12643 64 ESSCPICLKLFLV---GE-----------SAKKLDCKHTFHSTCILPWLE-KTSTCPLCRHEFKT 113 (144)
Q Consensus 64 ~~~C~IC~~~~~~---~~-----------~~~~~~C~h~f~~~Ci~~~~~-~~~~CP~Cr~~~~~ 113 (144)
...|+||+..... +. .-+.+||.|.||..|+.+|+. .+-.||+||.+++.
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 6779999986621 11 123459999999999999999 55589999998863
No 37
>KOG0824|consensus
Probab=98.08 E-value=2.3e-06 Score=65.20 Aligned_cols=59 Identities=24% Similarity=0.436 Sum_probs=47.0
Q ss_pred cccccccccccccCCCceeecCCCCcchHhhHHHHhh-CCCCccccccccCCCChhHHHHHHH
Q psy12643 63 PESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLE-KTSTCPLCRHEFKTDDADYEAYKVQ 124 (144)
Q Consensus 63 ~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~~~~~~~~ 124 (144)
...+|.||+... -.++.++|+|.||.-||..... ...+|++||.++.++...-+.++.+
T Consensus 6 ~~~eC~IC~nt~---n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~~~psl~~~ 65 (324)
T KOG0824|consen 6 KKKECLICYNTG---NCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTIDFEPSLKYR 65 (324)
T ss_pred cCCcceeeeccC---CcCccccccchhhhhhhcchhhcCCCCCceecCCCCcchhcchhhhhh
Confidence 367899998877 7778999999999999986555 5667999999998876665555543
No 38
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.04 E-value=1.8e-06 Score=52.86 Aligned_cols=50 Identities=32% Similarity=0.749 Sum_probs=23.6
Q ss_pred cccccccccccc-CCCceeec----CCCCcchHhhHHHHhh---CCC--------CccccccccCC
Q psy12643 64 ESSCPICLKLFL-VGESAKKL----DCKHTFHSTCILPWLE---KTS--------TCPLCRHEFKT 113 (144)
Q Consensus 64 ~~~C~IC~~~~~-~~~~~~~~----~C~h~f~~~Ci~~~~~---~~~--------~CP~Cr~~~~~ 113 (144)
+..|.||..... .+..+... .|+..||..||.+|+. ..+ .||.|++++..
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 467999998764 33333332 5999999999999997 111 49999998764
No 39
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.03 E-value=6.6e-06 Score=46.83 Aligned_cols=42 Identities=24% Similarity=0.669 Sum_probs=32.0
Q ss_pred ccccccccccCCCceeecCCC-----CcchHhhHHHHhhC--CCCccccc
Q psy12643 66 SCPICLKLFLVGESAKKLDCK-----HTFHSTCILPWLEK--TSTCPLCR 108 (144)
Q Consensus 66 ~C~IC~~~~~~~~~~~~~~C~-----h~f~~~Ci~~~~~~--~~~CP~Cr 108 (144)
.|.||++ ...+..+.+.||. +.+|..|+.+|+.. ..+||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4889988 3333566677874 78999999999974 45899984
No 40
>KOG1734|consensus
Probab=98.00 E-value=1.6e-06 Score=65.20 Aligned_cols=51 Identities=35% Similarity=0.796 Sum_probs=39.9
Q ss_pred CcccccccccccccCCC-------ceeecCCCCcchHhhHHHHhh--CCCCccccccccC
Q psy12643 62 EPESSCPICLKLFLVGE-------SAKKLDCKHTFHSTCILPWLE--KTSTCPLCRHEFK 112 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~-------~~~~~~C~h~f~~~Ci~~~~~--~~~~CP~Cr~~~~ 112 (144)
-++..|+||-..+.... ....++|+|.||..||.-|-. ++.+||.|+..+-
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 34788999988774332 345679999999999999986 6678999987653
No 41
>KOG4265|consensus
Probab=97.95 E-value=5.6e-06 Score=64.48 Aligned_cols=48 Identities=29% Similarity=0.668 Sum_probs=41.7
Q ss_pred cccccccccccccCCCceeecCCCC-cchHhhHHHHhhCCCCccccccccCC
Q psy12643 63 PESSCPICLKLFLVGESAKKLDCKH-TFHSTCILPWLEKTSTCPLCRHEFKT 113 (144)
Q Consensus 63 ~~~~C~IC~~~~~~~~~~~~~~C~h-~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 113 (144)
...+|.||+... ....+|||.| -.|..|.....-+.+.||+||+++..
T Consensus 289 ~gkeCVIClse~---rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 289 SGKECVICLSES---RDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred CCCeeEEEecCC---cceEEecchhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 367899999887 8889999999 67999998877788999999998754
No 42
>KOG0804|consensus
Probab=97.93 E-value=4.7e-06 Score=66.60 Aligned_cols=50 Identities=30% Similarity=0.810 Sum_probs=38.2
Q ss_pred CCcccccccccccccCCCceee-cCCCCcchHhhHHHHhhCCCCccccccccC
Q psy12643 61 HEPESSCPICLKLFLVGESAKK-LDCKHTFHSTCILPWLEKTSTCPLCRHEFK 112 (144)
Q Consensus 61 ~~~~~~C~IC~~~~~~~~~~~~-~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~ 112 (144)
..+-.+|++|++.+......++ +.|.|.||..|+..| ...+||+||....
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w--~~~scpvcR~~q~ 222 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKW--WDSSCPVCRYCQS 222 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeecccccchHHHhhc--ccCcChhhhhhcC
Confidence 3457889999999954332223 369999999999998 5677999997555
No 43
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.86 E-value=1.2e-05 Score=58.18 Aligned_cols=57 Identities=25% Similarity=0.403 Sum_probs=47.8
Q ss_pred ccccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccCCCChhHHHHHH
Q psy12643 64 ESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTDDADYEAYKV 123 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~ 123 (144)
.+.|.||-+.| ..++++.|||.||..|...-......|-+|.+...-..++...+..
T Consensus 196 PF~C~iCKkdy---~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~G~f~V~~d~~k 252 (259)
T COG5152 196 PFLCGICKKDY---ESPVVTECGHSFCSLCAIRKYQKGDECGVCGKATYGRFWVVSDLQK 252 (259)
T ss_pred ceeehhchhhc---cchhhhhcchhHHHHHHHHHhccCCcceecchhhccceeHHhhHHH
Confidence 67899999999 8899999999999999888777888999998877666666555544
No 44
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.85 E-value=5.4e-06 Score=71.54 Aligned_cols=51 Identities=33% Similarity=0.856 Sum_probs=37.6
Q ss_pred ccccccccccccc-CCC-ce--eecCCCCcchHhhHHHHhh--CCCCccccccccCC
Q psy12643 63 PESSCPICLKLFL-VGE-SA--KKLDCKHTFHSTCILPWLE--KTSTCPLCRHEFKT 113 (144)
Q Consensus 63 ~~~~C~IC~~~~~-~~~-~~--~~~~C~h~f~~~Ci~~~~~--~~~~CP~Cr~~~~~ 113 (144)
..++|+||...+. .+. -| +.-.|.|.||..|+..|+. ....||+||..++.
T Consensus 1468 G~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1468 GHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred CcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence 3788999988773 111 11 1225899999999999998 45689999987753
No 45
>KOG4159|consensus
Probab=97.84 E-value=2.9e-05 Score=62.12 Aligned_cols=49 Identities=29% Similarity=0.676 Sum_probs=44.6
Q ss_pred CcccccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccCC
Q psy12643 62 EPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKT 113 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 113 (144)
..++.|.||...+ ..++.++|||.||..||.+.+.....||.||..+..
T Consensus 82 ~sef~c~vc~~~l---~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRAL---YPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhc---CCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence 4489999999988 889999999999999999988888899999998875
No 46
>KOG4172|consensus
Probab=97.81 E-value=5.8e-06 Score=47.45 Aligned_cols=48 Identities=25% Similarity=0.531 Sum_probs=37.2
Q ss_pred cccccccccccccCCCceeecCCCC-cchHhhHHHHhh-CCCCccccccccCC
Q psy12643 63 PESSCPICLKLFLVGESAKKLDCKH-TFHSTCILPWLE-KTSTCPLCRHEFKT 113 (144)
Q Consensus 63 ~~~~C~IC~~~~~~~~~~~~~~C~h-~f~~~Ci~~~~~-~~~~CP~Cr~~~~~ 113 (144)
.+.+|.||.+-. -..+...||| -.|..|-.+.+. .+..||.||+++.+
T Consensus 6 ~~dECTICye~p---vdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~d 55 (62)
T KOG4172|consen 6 WSDECTICYEHP---VDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKD 55 (62)
T ss_pred cccceeeeccCc---chHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHH
Confidence 358999998765 5555668999 679999776666 77789999998753
No 47
>KOG0827|consensus
Probab=97.80 E-value=1e-05 Score=63.68 Aligned_cols=48 Identities=29% Similarity=0.819 Sum_probs=35.4
Q ss_pred ccccccccccccCCCceeecC-CCCcchHhhHHHHhh--CC-CCcccccccc
Q psy12643 64 ESSCPICLKLFLVGESAKKLD-CKHTFHSTCILPWLE--KT-STCPLCRHEF 111 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~-C~h~f~~~Ci~~~~~--~~-~~CP~Cr~~~ 111 (144)
...|.||.+.+........+. |||+||..|+..|+. .+ +.||.|+-.+
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~ 55 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL 55 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence 357999966664434444454 999999999999998 33 5899999433
No 48
>KOG2930|consensus
Probab=97.79 E-value=1.5e-05 Score=51.63 Aligned_cols=29 Identities=41% Similarity=0.975 Sum_probs=26.3
Q ss_pred CCCCcchHhhHHHHhhCCCCccccccccC
Q psy12643 84 DCKHTFHSTCILPWLEKTSTCPLCRHEFK 112 (144)
Q Consensus 84 ~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~ 112 (144)
.|.|.||..||.+|++....||+|.+..-
T Consensus 80 ~CNHaFH~hCisrWlktr~vCPLdn~eW~ 108 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRNVCPLDNKEWV 108 (114)
T ss_pred ecchHHHHHHHHHHHhhcCcCCCcCccee
Confidence 49999999999999999999999987653
No 49
>KOG1039|consensus
Probab=97.63 E-value=3.4e-05 Score=60.64 Aligned_cols=50 Identities=28% Similarity=0.725 Sum_probs=37.3
Q ss_pred CcccccccccccccCCC----ceee-cCCCCcchHhhHHHHhh--C-----CCCcccccccc
Q psy12643 62 EPESSCPICLKLFLVGE----SAKK-LDCKHTFHSTCILPWLE--K-----TSTCPLCRHEF 111 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~----~~~~-~~C~h~f~~~Ci~~~~~--~-----~~~CP~Cr~~~ 111 (144)
..+..|.||++...... ...+ .+|.|.||..||..|.. + .+.||.||...
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 34788999999774322 0122 35999999999999994 4 46899999864
No 50
>KOG1813|consensus
Probab=97.62 E-value=3.5e-05 Score=58.73 Aligned_cols=61 Identities=25% Similarity=0.377 Sum_probs=49.5
Q ss_pred ccccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccCCCChhHHHHHHHHHH
Q psy12643 64 ESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTDDADYEAYKVQKKR 127 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~ 127 (144)
.+.|-||...| ..++++.|+|.||..|...-+.....|.+|.+......+....+...-..
T Consensus 241 Pf~c~icr~~f---~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~~~~akeL~~~L~~ 301 (313)
T KOG1813|consen 241 PFKCFICRKYF---YRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGSFNVAKELLVSLKL 301 (313)
T ss_pred Ccccccccccc---ccchhhcCCceeehhhhccccccCCcceecccccccccchHHHHHHHHHh
Confidence 66799999999 88999999999999998877778889999999887666665555544433
No 51
>KOG2660|consensus
Probab=97.53 E-value=5e-05 Score=58.69 Aligned_cols=50 Identities=28% Similarity=0.778 Sum_probs=40.8
Q ss_pred cccccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccCCC
Q psy12643 63 PESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTD 114 (144)
Q Consensus 63 ~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 114 (144)
....|.+|..++. +...+..|-|.||.+||..++.....||.|...+...
T Consensus 14 ~~itC~LC~GYli--DATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 14 PHITCRLCGGYLI--DATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred cceehhhccceee--cchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 3788999999983 3334446999999999999999999999999866544
No 52
>KOG4445|consensus
Probab=97.44 E-value=1.9e-05 Score=60.29 Aligned_cols=54 Identities=28% Similarity=0.713 Sum_probs=44.2
Q ss_pred ccccccccccccCCCceeecCCCCcchHhhHHHHhhC-----------------------CCCccccccccCCCChh
Q psy12643 64 ESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEK-----------------------TSTCPLCRHEFKTDDAD 117 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~-----------------------~~~CP~Cr~~~~~~~~~ 117 (144)
...|.||+.-|..+...++++|-|.||..|+.+++.. ...||+||..+..+...
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~~s 191 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEENS 191 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccccccc
Confidence 6789999999987777889999999999999887751 12499999988766544
No 53
>KOG1645|consensus
Probab=97.41 E-value=0.00028 Score=56.10 Aligned_cols=51 Identities=37% Similarity=0.851 Sum_probs=37.5
Q ss_pred cccccccccccccCC-Cce-eecCCCCcchHhhHHHHhhC--CCCccccccccCC
Q psy12643 63 PESSCPICLKLFLVG-ESA-KKLDCKHTFHSTCILPWLEK--TSTCPLCRHEFKT 113 (144)
Q Consensus 63 ~~~~C~IC~~~~~~~-~~~-~~~~C~h~f~~~Ci~~~~~~--~~~CP~Cr~~~~~ 113 (144)
...+|+||++.+... .+. +.+.|||.|..+||..|+.+ ...||.|...-..
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katk 57 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATK 57 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHH
Confidence 357899999987533 333 34569999999999999963 2369999765443
No 54
>KOG0297|consensus
Probab=97.39 E-value=8.9e-05 Score=59.48 Aligned_cols=54 Identities=28% Similarity=0.744 Sum_probs=45.5
Q ss_pred CcccccccccccccCCCceee-cCCCCcchHhhHHHHhhCCCCccccccccCCCChhH
Q psy12643 62 EPESSCPICLKLFLVGESAKK-LDCKHTFHSTCILPWLEKTSTCPLCRHEFKTDDADY 118 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~-~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 118 (144)
..+..|++|...+ ..+.. +.|||.||..|+..|+..+..||.|+..+.......
T Consensus 19 ~~~l~C~~C~~vl---~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~~ 73 (391)
T KOG0297|consen 19 DENLLCPICMSVL---RDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEELP 73 (391)
T ss_pred cccccCccccccc---cCCCCCCCCCCcccccccchhhccCcCCcccccccchhhccC
Confidence 4479999999998 66666 589999999999999999999999998876655443
No 55
>KOG1785|consensus
Probab=97.37 E-value=7.1e-05 Score=59.40 Aligned_cols=51 Identities=29% Similarity=0.690 Sum_probs=39.4
Q ss_pred ccccccccccccCCCceeecCCCCcchHhhHHHHhh--CCCCccccccccCCCChh
Q psy12643 64 ESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLE--KTSTCPLCRHEFKTDDAD 117 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~--~~~~CP~Cr~~~~~~~~~ 117 (144)
-..|.||-+.- ....+-||||..|..|+..|.. ...+||.||..+.-...+
T Consensus 369 FeLCKICaend---KdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~v 421 (563)
T KOG1785|consen 369 FELCKICAEND---KDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEPV 421 (563)
T ss_pred HHHHHHhhccC---CCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccccce
Confidence 45599997663 4555568999999999999985 367899999988655444
No 56
>KOG2879|consensus
Probab=97.32 E-value=0.00019 Score=54.30 Aligned_cols=49 Identities=24% Similarity=0.594 Sum_probs=38.2
Q ss_pred CCcccccccccccccCCCceeec-CCCCcchHhhHHHHhh--CCCCccccccccC
Q psy12643 61 HEPESSCPICLKLFLVGESAKKL-DCKHTFHSTCILPWLE--KTSTCPLCRHEFK 112 (144)
Q Consensus 61 ~~~~~~C~IC~~~~~~~~~~~~~-~C~h~f~~~Ci~~~~~--~~~~CP~Cr~~~~ 112 (144)
.+.+.+|++|.+.. ..|.+. +|+|+||..|+..-.. -+.+||.|..+..
T Consensus 236 ~t~~~~C~~Cg~~P---tiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPP---TIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCC---CCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 45589999999887 444444 6999999999987665 4578999987665
No 57
>KOG0825|consensus
Probab=97.29 E-value=5.9e-05 Score=64.19 Aligned_cols=51 Identities=31% Similarity=0.569 Sum_probs=37.4
Q ss_pred ccccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccCCC
Q psy12643 64 ESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTD 114 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 114 (144)
...|++|+..+...-.....+|+|.||..||..|-.-..+||+||..|...
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v 173 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEV 173 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhee
Confidence 445666666553222223347999999999999999999999999977543
No 58
>KOG1002|consensus
Probab=97.28 E-value=0.00015 Score=59.55 Aligned_cols=84 Identities=23% Similarity=0.447 Sum_probs=56.9
Q ss_pred CchHHHHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHhhccccCCCcccccccccccccCCCceeecCCCCcchHhhHHHH
Q psy12643 18 TPNHMLHLARLLRDFGMNPYEFNDELPPPASKAFVKSLQEVTSHEPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPW 97 (144)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~ 97 (144)
+++.+..+...++|....|....-. ....++. .......|.+|.+.. ...+...|.|.||..|+.+|
T Consensus 500 NYAnIF~LitRmRQ~aDHP~LVl~S--------~~~n~~~--enk~~~~C~lc~d~a---ed~i~s~ChH~FCrlCi~ey 566 (791)
T KOG1002|consen 500 NYANIFTLITRMRQAADHPDLVLYS--------ANANLPD--ENKGEVECGLCHDPA---EDYIESSCHHKFCRLCIKEY 566 (791)
T ss_pred hHHHHHHHHHHHHHhccCcceeeeh--------hhcCCCc--cccCceeecccCChh---hhhHhhhhhHHHHHHHHHHH
Confidence 3677777777777766544433321 1111111 122367899998887 77788899999999999888
Q ss_pred hh-----CCCCccccccccCCC
Q psy12643 98 LE-----KTSTCPLCRHEFKTD 114 (144)
Q Consensus 98 ~~-----~~~~CP~Cr~~~~~~ 114 (144)
+. ..-+||+|-..+..+
T Consensus 567 v~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 567 VESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred HHhhhcccCCCCcccccccccc
Confidence 86 234799999887765
No 59
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.10 E-value=0.0004 Score=40.71 Aligned_cols=42 Identities=36% Similarity=0.770 Sum_probs=27.9
Q ss_pred CcccccccccccccCCCceee-cCCCCcchHhhHHHHhh--CCCCccc
Q psy12643 62 EPESSCPICLKLFLVGESAKK-LDCKHTFHSTCILPWLE--KTSTCPL 106 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~-~~C~h~f~~~Ci~~~~~--~~~~CP~ 106 (144)
.-...|+|.+..+ ..++. ..|+|.|-...|.+|+. ....||+
T Consensus 9 ~~~~~CPiT~~~~---~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPF---EDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB----SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChh---hCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 3478899999998 66655 47999999999999994 4456998
No 60
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.08 E-value=0.00057 Score=53.33 Aligned_cols=52 Identities=19% Similarity=0.570 Sum_probs=36.5
Q ss_pred ccccccccccccCCCce-eecCCCCcchHhhHHHHhh-CCCCccccccccCCCC
Q psy12643 64 ESSCPICLKLFLVGESA-KKLDCKHTFHSTCILPWLE-KTSTCPLCRHEFKTDD 115 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~-~~~~C~h~f~~~Ci~~~~~-~~~~CP~Cr~~~~~~~ 115 (144)
++-|++|++.+...+.- .-.+||-..|..|+..... -...||.||..+.+..
T Consensus 14 ed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 14 EDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred cccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 44499999998543322 2236899999999876655 4557999999765443
No 61
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.98 E-value=0.001 Score=51.09 Aligned_cols=43 Identities=35% Similarity=0.725 Sum_probs=36.6
Q ss_pred ccccccccccccCCCceeecC-CCCcchHhhHHHHhh-CCCCcccccc
Q psy12643 64 ESSCPICLKLFLVGESAKKLD-CKHTFHSTCILPWLE-KTSTCPLCRH 109 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~-C~h~f~~~Ci~~~~~-~~~~CP~Cr~ 109 (144)
...|+.|.-++ ..+..++ |+|.||..||...+. ....||.|..
T Consensus 274 ~LkCplc~~Ll---rnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 274 SLKCPLCHCLL---RNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred cccCcchhhhh---hCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 37899999988 7788886 899999999987776 6678999976
No 62
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=96.90 E-value=0.0011 Score=37.30 Aligned_cols=44 Identities=25% Similarity=0.619 Sum_probs=22.1
Q ss_pred cccccccccCCCceeec--CCCCcchHhhHHHHhh-CCCCcccccccc
Q psy12643 67 CPICLKLFLVGESAKKL--DCKHTFHSTCILPWLE-KTSTCPLCRHEF 111 (144)
Q Consensus 67 C~IC~~~~~~~~~~~~~--~C~h~f~~~Ci~~~~~-~~~~CP~Cr~~~ 111 (144)
|++|.+.+.. ...... +|+..+|..|....+. ....||.||.++
T Consensus 1 cp~C~e~~d~-~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDE-TDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--C-CCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCccccccc-CCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 7889888833 222333 5899999999998886 678899999864
No 63
>KOG4692|consensus
Probab=96.86 E-value=0.0012 Score=51.88 Aligned_cols=49 Identities=24% Similarity=0.464 Sum_probs=42.2
Q ss_pred CcccccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccCC
Q psy12643 62 EPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKT 113 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 113 (144)
.++..|+||.... ...+..||+|.-|+.||.+.+-..+.|=.|+..+..
T Consensus 420 sEd~lCpICyA~p---i~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGP---INAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceeccc---chhhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 4588899996554 667778999999999999999999999999988774
No 64
>KOG1941|consensus
Probab=96.83 E-value=0.00045 Score=54.80 Aligned_cols=46 Identities=35% Similarity=0.732 Sum_probs=36.7
Q ss_pred ccccccccccccCCC-ceeecCCCCcchHhhHHHHhh--CCCCcccccc
Q psy12643 64 ESSCPICLKLFLVGE-SAKKLDCKHTFHSTCILPWLE--KTSTCPLCRH 109 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~-~~~~~~C~h~f~~~Ci~~~~~--~~~~CP~Cr~ 109 (144)
+..|..|-+.+.... ....+||.|+||..|+.+++. ...+||.||+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 677999999875433 334579999999999999997 4458999995
No 65
>KOG1428|consensus
Probab=96.81 E-value=0.0024 Score=58.19 Aligned_cols=53 Identities=32% Similarity=0.739 Sum_probs=41.7
Q ss_pred CcccccccccccccCCCceeecCCCCcchHhhHHHHhhCC----------CCccccccccCCC
Q psy12643 62 EPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKT----------STCPLCRHEFKTD 114 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~----------~~CP~Cr~~~~~~ 114 (144)
..++-|.||..+-....+.+++.|+|+||..|....+... -.||.|..++...
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 3478899998876655678899999999999997666521 1599999988654
No 66
>KOG1814|consensus
Probab=96.66 E-value=0.0056 Score=48.93 Aligned_cols=35 Identities=29% Similarity=0.654 Sum_probs=29.2
Q ss_pred ccccccccccccCC-CceeecCCCCcchHhhHHHHhh
Q psy12643 64 ESSCPICLKLFLVG-ESAKKLDCKHTFHSTCILPWLE 99 (144)
Q Consensus 64 ~~~C~IC~~~~~~~-~~~~~~~C~h~f~~~Ci~~~~~ 99 (144)
.+.|.||.+.. .| .....+||+|.||..|+..|..
T Consensus 184 lf~C~ICf~e~-~G~~c~~~lpC~Hv~Ck~C~kdY~~ 219 (445)
T KOG1814|consen 184 LFDCCICFEEQ-MGQHCFKFLPCSHVFCKSCLKDYFT 219 (445)
T ss_pred cccceeeehhh-cCcceeeecccchHHHHHHHHHHHH
Confidence 67899999986 44 4556679999999999998886
No 67
>KOG4275|consensus
Probab=96.44 E-value=0.00034 Score=53.47 Aligned_cols=42 Identities=26% Similarity=0.646 Sum_probs=33.8
Q ss_pred ccccccccccccCCCceeecCCCC-cchHhhHHHHhhCCCCccccccccC
Q psy12643 64 ESSCPICLKLFLVGESAKKLDCKH-TFHSTCILPWLEKTSTCPLCRHEFK 112 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~C~h-~f~~~Ci~~~~~~~~~CP~Cr~~~~ 112 (144)
...|.||++.. ...+.|+||| .-|..|..+ ...||+||+.+.
T Consensus 300 ~~LC~ICmDaP---~DCvfLeCGHmVtCt~CGkr----m~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAP---RDCVFLECGHMVTCTKCGKR----MNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCC---cceEEeecCcEEeehhhccc----cccCchHHHHHH
Confidence 67799998877 8889999999 568888654 348999998654
No 68
>KOG4185|consensus
Probab=96.42 E-value=0.0036 Score=48.21 Aligned_cols=62 Identities=24% Similarity=0.518 Sum_probs=44.7
Q ss_pred ccccccccccccCCC---ceeecCCCCcchHhhHHHHhhC-CCCccccccccCCCChhHHHHHHHH
Q psy12643 64 ESSCPICLKLFLVGE---SAKKLDCKHTFHSTCILPWLEK-TSTCPLCRHEFKTDDADYEAYKVQK 125 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~---~~~~~~C~h~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~~~~~~ 125 (144)
-..|-||-+.|+.++ .+..+.|||.+|..|+...+.. .-.||.||............+.++-
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf 68 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNF 68 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhH
Confidence 357999999996552 4566789999999999887763 4469999998644444444444433
No 69
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.30 E-value=0.0056 Score=46.55 Aligned_cols=55 Identities=25% Similarity=0.444 Sum_probs=42.4
Q ss_pred CcccccccccccccCCCceeec-CCCCcchHhhHHHHhhCCCCccccccccCCCChh
Q psy12643 62 EPESSCPICLKLFLVGESAKKL-DCKHTFHSTCILPWLEKTSTCPLCRHEFKTDDAD 117 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~-~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 117 (144)
...+.|+|....+......+.+ +|||.|...++.... ....||+|..+|...+.+
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~DiI 166 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEEDII 166 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccCCEE
Confidence 4478899999998443344444 899999999999874 456799999998876655
No 70
>KOG4739|consensus
Probab=96.25 E-value=0.0015 Score=48.63 Aligned_cols=49 Identities=20% Similarity=0.604 Sum_probs=34.5
Q ss_pred ccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccCCCChh
Q psy12643 66 SCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTDDAD 117 (144)
Q Consensus 66 ~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 117 (144)
-|..|..... +....++.|+|+||..|...- ....||.|++++.....+
T Consensus 5 hCn~C~~~~~-~~~f~LTaC~HvfC~~C~k~~--~~~~C~lCkk~ir~i~l~ 53 (233)
T KOG4739|consen 5 HCNKCFRFPS-QDPFFLTACRHVFCEPCLKAS--SPDVCPLCKKSIRIIQLN 53 (233)
T ss_pred EeccccccCC-CCceeeeechhhhhhhhcccC--Cccccccccceeeeeecc
Confidence 4777776654 456667789999999996532 233899999987554433
No 71
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.22 E-value=0.0026 Score=36.75 Aligned_cols=45 Identities=27% Similarity=0.623 Sum_probs=32.5
Q ss_pred cccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccCCC
Q psy12643 65 SSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTD 114 (144)
Q Consensus 65 ~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 114 (144)
..|-.|...- ...++++|+|..|..|..- .+-+.||.|..++...
T Consensus 8 ~~~~~~~~~~---~~~~~~pCgH~I~~~~f~~--~rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 8 QPCVFCGFVG---TKGTVLPCGHLICDNCFPG--ERYNGCPFCGTPFEFD 52 (55)
T ss_pred eeEEEccccc---cccccccccceeeccccCh--hhccCCCCCCCcccCC
Confidence 3455554443 5667889999999999653 3667899999988654
No 72
>KOG3039|consensus
Probab=96.17 E-value=0.005 Score=46.17 Aligned_cols=55 Identities=16% Similarity=0.274 Sum_probs=46.9
Q ss_pred cccccccccccccCCCceeec-CCCCcchHhhHHHHhhCCCCccccccccCCCChh
Q psy12643 63 PESSCPICLKLFLVGESAKKL-DCKHTFHSTCILPWLEKTSTCPLCRHEFKTDDAD 117 (144)
Q Consensus 63 ~~~~C~IC~~~~~~~~~~~~~-~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 117 (144)
..+.|++|...+........| +|||.|+..|+...+.....||+|..++.+++.+
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI 275 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDII 275 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceE
Confidence 478899999998665555555 7999999999999999999999999999887766
No 73
>KOG0826|consensus
Probab=96.09 E-value=0.0068 Score=47.13 Aligned_cols=50 Identities=24% Similarity=0.553 Sum_probs=40.3
Q ss_pred CcccccccccccccCCCceeecC-CCCcchHhhHHHHhhCCCCccccccccCCC
Q psy12643 62 EPESSCPICLKLFLVGESAKKLD-CKHTFHSTCILPWLEKTSTCPLCRHEFKTD 114 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~~-C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 114 (144)
.+...|++|+... ..+.++. -|-.||..|+..++.....||+-..+...+
T Consensus 298 ~~~~~CpvClk~r---~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~v~ 348 (357)
T KOG0826|consen 298 PDREVCPVCLKKR---QNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPASVD 348 (357)
T ss_pred CccccChhHHhcc---CCCceEEecceEEeHHHHHHHHHhcCCCCccCCcchHH
Confidence 4478899998876 5555554 699999999999999999999987766543
No 74
>KOG2114|consensus
Probab=96.01 E-value=0.013 Score=50.74 Aligned_cols=43 Identities=28% Similarity=0.664 Sum_probs=33.6
Q ss_pred ccccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCcccccccc
Q psy12643 64 ESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEF 111 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~ 111 (144)
...|..|-..++ -+.+...|||.||.+|+. .....||.|+...
T Consensus 840 ~skCs~C~~~Ld--lP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 840 VSKCSACEGTLD--LPFVHFLCGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred eeeecccCCccc--cceeeeecccHHHHHhhc---cCcccCCccchhh
Confidence 457999988882 344567899999999987 4667899998743
No 75
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=96.00 E-value=0.0076 Score=42.25 Aligned_cols=53 Identities=32% Similarity=0.595 Sum_probs=36.6
Q ss_pred ccccccccccccCCCceeecC------------CCC-cchHhhHHHHhhC------------------------------
Q psy12643 64 ESSCPICLKLFLVGESAKKLD------------CKH-TFHSTCILPWLEK------------------------------ 100 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~------------C~h-~f~~~Ci~~~~~~------------------------------ 100 (144)
+..|+||++.. ...+.|- |+. .-|..|+.++.+.
T Consensus 2 d~~CpICme~P---HNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (162)
T PF07800_consen 2 DVTCPICMEHP---HNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQ 78 (162)
T ss_pred CccCceeccCC---CceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccccc
Confidence 57899999887 5555553 332 3478899887651
Q ss_pred -CCCccccccccCCCChhHH
Q psy12643 101 -TSTCPLCRHEFKTDDADYE 119 (144)
Q Consensus 101 -~~~CP~Cr~~~~~~~~~~~ 119 (144)
.-.||+||..+.-++.+.+
T Consensus 79 ~~L~CPLCRG~V~GWtvve~ 98 (162)
T PF07800_consen 79 PELACPLCRGEVKGWTVVEP 98 (162)
T ss_pred ccccCccccCceeceEEchH
Confidence 0139999999887766644
No 76
>PHA02862 5L protein; Provisional
Probab=95.92 E-value=0.0064 Score=41.99 Aligned_cols=46 Identities=24% Similarity=0.652 Sum_probs=33.9
Q ss_pred ccccccccccccCCCceeecCCC-----CcchHhhHHHHhh--CCCCccccccccCC
Q psy12643 64 ESSCPICLKLFLVGESAKKLDCK-----HTFHSTCILPWLE--KTSTCPLCRHEFKT 113 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~C~-----h~f~~~Ci~~~~~--~~~~CP~Cr~~~~~ 113 (144)
+..|-||.+.-+ .. .-||. ...|..|+.+|+. +...|+.|+.++..
T Consensus 2 ~diCWIC~~~~~---e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 2 SDICWICNDVCD---ER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CCEEEEecCcCC---CC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 457999988742 22 34552 4679999999998 45579999998864
No 77
>KOG3970|consensus
Probab=95.91 E-value=0.012 Score=43.56 Aligned_cols=50 Identities=26% Similarity=0.640 Sum_probs=39.5
Q ss_pred ccccccccccccCCCceeecCCCCcchHhhHHHHhhC--------CCCccccccccCCC
Q psy12643 64 ESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEK--------TSTCPLCRHEFKTD 114 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~--------~~~CP~Cr~~~~~~ 114 (144)
..-|.+|...+..++ .+.+-|-|.||..|+.+|... ...||.|..++...
T Consensus 50 ~pNC~LC~t~La~gd-t~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp 107 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGD-TTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPP 107 (299)
T ss_pred CCCCceeCCccccCc-ceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCC
Confidence 556999988886544 567889999999999999872 34699999987554
No 78
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=95.89 E-value=0.01 Score=41.70 Aligned_cols=48 Identities=21% Similarity=0.663 Sum_probs=34.6
Q ss_pred CcccccccccccccCCCceeecCCCC-----cchHhhHHHHhh--CCCCccccccccCC
Q psy12643 62 EPESSCPICLKLFLVGESAKKLDCKH-----TFHSTCILPWLE--KTSTCPLCRHEFKT 113 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~~C~h-----~f~~~Ci~~~~~--~~~~CP~Cr~~~~~ 113 (144)
..+..|-||.+.. . ....||.. ..|.+|+.+|+. +...|+.|++++..
T Consensus 6 ~~~~~CRIC~~~~---~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 6 LMDKCCWICKDEY---D-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCCeeEecCCCC---C-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 3477899998774 2 22346533 559999999998 44579999997644
No 79
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=95.83 E-value=0.0074 Score=33.84 Aligned_cols=40 Identities=28% Similarity=0.718 Sum_probs=25.5
Q ss_pred cccccccccCCCceeecCCC--C---cchHhhHHHHhh--CCCCcccc
Q psy12643 67 CPICLKLFLVGESAKKLDCK--H---TFHSTCILPWLE--KTSTCPLC 107 (144)
Q Consensus 67 C~IC~~~~~~~~~~~~~~C~--h---~f~~~Ci~~~~~--~~~~CP~C 107 (144)
|-||++.-.... +.+.||. - ..|..|+.+|+. ....|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 678988764323 5566753 3 779999999998 55678876
No 80
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=95.82 E-value=0.0064 Score=33.48 Aligned_cols=41 Identities=27% Similarity=0.797 Sum_probs=21.6
Q ss_pred cccccccccCCCceeecCCCCcchHhhHHHHhhCCC--Ccccc
Q psy12643 67 CPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTS--TCPLC 107 (144)
Q Consensus 67 C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~--~CP~C 107 (144)
|.+|.+....|..-....|+-.+|..|+..++.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 567777664333222235888999999999998544 79987
No 81
>KOG3268|consensus
Probab=95.82 E-value=0.0066 Score=43.45 Aligned_cols=31 Identities=32% Similarity=0.931 Sum_probs=25.3
Q ss_pred CCCCcchHhhHHHHhhC-----CC------CccccccccCCC
Q psy12643 84 DCKHTFHSTCILPWLEK-----TS------TCPLCRHEFKTD 114 (144)
Q Consensus 84 ~C~h~f~~~Ci~~~~~~-----~~------~CP~Cr~~~~~~ 114 (144)
.||..||.-|+..|+.. +. .||.|..++..+
T Consensus 189 qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 189 QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 69999999999999982 11 499999888654
No 82
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.74 E-value=0.0039 Score=40.55 Aligned_cols=33 Identities=24% Similarity=0.505 Sum_probs=26.4
Q ss_pred CcccccccccccccCCCceeecCCCCcchHhhHH
Q psy12643 62 EPESSCPICLKLFLVGESAKKLDCKHTFHSTCIL 95 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~ 95 (144)
.+...|++|...+.. ......||||.||..|+.
T Consensus 76 ~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 447789999998854 455667999999999964
No 83
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=95.64 E-value=0.012 Score=40.16 Aligned_cols=50 Identities=22% Similarity=0.542 Sum_probs=37.7
Q ss_pred cccccccccccccCCCceeec-C---CCCcchHhhHHHHhh---CCCCccccccccCCCC
Q psy12643 63 PESSCPICLKLFLVGESAKKL-D---CKHTFHSTCILPWLE---KTSTCPLCRHEFKTDD 115 (144)
Q Consensus 63 ~~~~C~IC~~~~~~~~~~~~~-~---C~h~f~~~Ci~~~~~---~~~~CP~Cr~~~~~~~ 115 (144)
.-++|.||.+... +...+ | ||-..|..|....++ -...||+|+.++....
T Consensus 79 ~lYeCnIC~etS~---ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 79 KLYECNICKETSA---EERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred CceeccCcccccc---hhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 4689999998763 22333 2 899999999877776 4567999999987654
No 84
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.63 E-value=0.011 Score=46.41 Aligned_cols=47 Identities=30% Similarity=0.626 Sum_probs=37.4
Q ss_pred CcccccccccccccCCCceeecCCCCcchHhhHHH--HhhCCCCcccccccc
Q psy12643 62 EPESSCPICLKLFLVGESAKKLDCKHTFHSTCILP--WLEKTSTCPLCRHEF 111 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~--~~~~~~~CP~Cr~~~ 111 (144)
++...|-||-+.+ .-..++||+|..|--|..+ .+..++.|++||...
T Consensus 59 Een~~C~ICA~~~---TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 59 EENMNCQICAGST---TYSARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred cccceeEEecCCc---eEEEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 3466799998877 6677889999999999754 444888999999853
No 85
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=95.48 E-value=0.0052 Score=34.33 Aligned_cols=43 Identities=23% Similarity=0.643 Sum_probs=25.4
Q ss_pred ccccccccccCCCceeecCC-CCcchHhhHHHHhhCCCCccccccccCC
Q psy12643 66 SCPICLKLFLVGESAKKLDC-KHTFHSTCILPWLEKTSTCPLCRHEFKT 113 (144)
Q Consensus 66 ~C~IC~~~~~~~~~~~~~~C-~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 113 (144)
-|.-|+-.. .....| .|..|..|+..++..+..||.|..+++.
T Consensus 4 nCKsCWf~~-----k~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 4 NCKSCWFAN-----KGLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp ---SS-S-------SSEEE-SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred cChhhhhcC-----CCeeeecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 355565332 234457 5899999999999999999999998875
No 86
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=95.44 E-value=0.0068 Score=41.42 Aligned_cols=36 Identities=17% Similarity=0.392 Sum_probs=28.7
Q ss_pred ccccccccccccCCCceeecCCC------CcchHhhHHHHhh
Q psy12643 64 ESSCPICLKLFLVGESAKKLDCK------HTFHSTCILPWLE 99 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~C~------h~f~~~Ci~~~~~ 99 (144)
..+|.||++.+......+.++|+ |.||..|+.+|-.
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 68899999998764455666664 7899999999944
No 87
>KOG1571|consensus
Probab=95.42 E-value=0.0081 Score=47.24 Aligned_cols=43 Identities=30% Similarity=0.683 Sum_probs=32.3
Q ss_pred ccccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccC
Q psy12643 64 ESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFK 112 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~ 112 (144)
..-|.||.+.. .....++|||.-| |..-. .....||+||+.+.
T Consensus 305 p~lcVVcl~e~---~~~~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 305 PDLCVVCLDEP---KSAVFVPCGHVCC--CTLCS-KHLPQCPVCRQRIR 347 (355)
T ss_pred CCceEEecCCc---cceeeecCCcEEE--chHHH-hhCCCCchhHHHHH
Confidence 67799999887 6678889999866 65433 34445999998765
No 88
>KOG3800|consensus
Probab=95.33 E-value=0.038 Score=42.36 Aligned_cols=51 Identities=18% Similarity=0.460 Sum_probs=35.0
Q ss_pred cccccccc--ccCCCceeecCCCCcchHhhHHHHhh-CCCCccccccccCCCCh
Q psy12643 66 SCPICLKL--FLVGESAKKLDCKHTFHSTCILPWLE-KTSTCPLCRHEFKTDDA 116 (144)
Q Consensus 66 ~C~IC~~~--~~~~~~~~~~~C~h~f~~~Ci~~~~~-~~~~CP~Cr~~~~~~~~ 116 (144)
.|++|... +.+.-...+-+|+|..|.+|+...+. ....||.|...+....-
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nf 55 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNF 55 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhccc
Confidence 47888652 22111222337999999999999987 56689999887755433
No 89
>KOG2817|consensus
Probab=95.32 E-value=0.012 Score=46.79 Aligned_cols=46 Identities=17% Similarity=0.309 Sum_probs=38.5
Q ss_pred ccccccccccccCCCceeecCCCCcchHhhHHHHhhCC---CCcccccc
Q psy12643 64 ESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKT---STCPLCRH 109 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~---~~CP~Cr~ 109 (144)
-+.|||-.+.-....+|+.+.|||+.+.+-+.+..... ..||.|-.
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~ 382 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPV 382 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence 57799988777776789999999999999999988733 57999954
No 90
>KOG1940|consensus
Probab=94.94 E-value=0.02 Score=43.82 Aligned_cols=53 Identities=30% Similarity=0.616 Sum_probs=40.3
Q ss_pred ccccccccccccCCC-ceeecCCCCcchHhhHHHHhhCCCCccccccccCCCChh
Q psy12643 64 ESSCPICLKLFLVGE-SAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTDDAD 117 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~-~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 117 (144)
..-|+||.+.+-.+. .+..++|||..|..|+..+......||.|.+ +.+....
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~-~~d~~~~ 211 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK-PGDMSHY 211 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc-hHHHHHH
Confidence 444999998774443 4556789999999999998877799999988 5554333
No 91
>PHA03096 p28-like protein; Provisional
Probab=94.78 E-value=0.019 Score=44.33 Aligned_cols=45 Identities=31% Similarity=0.546 Sum_probs=30.5
Q ss_pred cccccccccccCC----Cceeec-CCCCcchHhhHHHHhhC---CCCcccccc
Q psy12643 65 SSCPICLKLFLVG----ESAKKL-DCKHTFHSTCILPWLEK---TSTCPLCRH 109 (144)
Q Consensus 65 ~~C~IC~~~~~~~----~~~~~~-~C~h~f~~~Ci~~~~~~---~~~CP~Cr~ 109 (144)
..|.||++..... ..-..+ .|.|.||..|+..|... ...||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 6799999876432 122334 59999999999999872 234554444
No 92
>KOG1952|consensus
Probab=94.71 E-value=0.017 Score=50.04 Aligned_cols=48 Identities=27% Similarity=0.684 Sum_probs=34.8
Q ss_pred CcccccccccccccCCCceee-cCCCCcchHhhHHHHhhCCC-------Ccccccc
Q psy12643 62 EPESSCPICLKLFLVGESAKK-LDCKHTFHSTCILPWLEKTS-------TCPLCRH 109 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~-~~C~h~f~~~Ci~~~~~~~~-------~CP~Cr~ 109 (144)
...++|.||.+.+........ ..|-|+||..||..|..... .||.|..
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 348999999999853332222 24789999999999987311 4999984
No 93
>KOG1001|consensus
Probab=94.56 E-value=0.019 Score=49.20 Aligned_cols=45 Identities=31% Similarity=0.746 Sum_probs=37.2
Q ss_pred cccccccccccCCCceeecCCCCcchHhhHHHHhhCC--CCccccccccCC
Q psy12643 65 SSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKT--STCPLCRHEFKT 113 (144)
Q Consensus 65 ~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~--~~CP~Cr~~~~~ 113 (144)
..|.||.+ . .....+.|+|.||..|+...+... ..||.||..+..
T Consensus 455 ~~c~ic~~-~---~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-L---DSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-c---ccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 89999998 4 788889999999999998887732 369999876543
No 94
>KOG0801|consensus
Probab=94.47 E-value=0.011 Score=41.64 Aligned_cols=30 Identities=27% Similarity=0.709 Sum_probs=26.7
Q ss_pred CcccccccccccccCCCceeecCCCCcchH
Q psy12643 62 EPESSCPICLKLFLVGESAKKLDCKHTFHS 91 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~ 91 (144)
.+.-+|.||+|+++.++...+|||-.+||+
T Consensus 175 ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 175 DDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred ccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 347889999999999999999999988885
No 95
>KOG4367|consensus
Probab=94.02 E-value=0.034 Score=45.08 Aligned_cols=35 Identities=29% Similarity=0.654 Sum_probs=30.7
Q ss_pred CcccccccccccccCCCceeecCCCCcchHhhHHHHhh
Q psy12643 62 EPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLE 99 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~ 99 (144)
++...|+||...| .++++++|+|..|..|....+.
T Consensus 2 eeelkc~vc~~f~---~epiil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 2 EEELKCPVCGSFY---REPIILPCSHNLCQACARNILV 36 (699)
T ss_pred cccccCceehhhc---cCceEeecccHHHHHHHHhhcc
Confidence 4578899999999 8999999999999999876655
No 96
>KOG1812|consensus
Probab=93.34 E-value=0.15 Score=41.06 Aligned_cols=81 Identities=20% Similarity=0.416 Sum_probs=45.1
Q ss_pred Cccccccccc-ccccCCCceeecCCCCcchHhhHHHHhhCC------CCccc--cccccCCCChh-HHHHHHHHHHHHHH
Q psy12643 62 EPESSCPICL-KLFLVGESAKKLDCKHTFHSTCILPWLEKT------STCPL--CRHEFKTDDAD-YEAYKVQKKREKER 131 (144)
Q Consensus 62 ~~~~~C~IC~-~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~------~~CP~--Cr~~~~~~~~~-~~~~~~~~~~~~~~ 131 (144)
....+|.||. +............|+|.||..|+.+++... ..||- |...+...... +...+....++...
T Consensus 144 ~~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~c~~llt~kl~e~~e~~~ 223 (384)
T KOG1812|consen 144 LPKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLESCRKLLTPKLREMWEQRL 223 (384)
T ss_pred cccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHHHhhhcCHHHHHHHHHHH
Confidence 3478899999 444222222345799999999999888722 24654 33333333222 11113344556555
Q ss_pred HHHHHHHhhcc
Q psy12643 132 EGEIENLHNAM 142 (144)
Q Consensus 132 ~~~~~~~~~~~ 142 (144)
+++....++.+
T Consensus 224 ~e~~i~~~~~~ 234 (384)
T KOG1812|consen 224 KEEVIPSLDRV 234 (384)
T ss_pred HHHhhhhhhcc
Confidence 55555544443
No 97
>KOG2034|consensus
Probab=92.74 E-value=0.064 Score=46.82 Aligned_cols=37 Identities=30% Similarity=0.727 Sum_probs=29.5
Q ss_pred CcccccccccccccCCCceeecCCCCcchHhhHHHHhh
Q psy12643 62 EPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLE 99 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~ 99 (144)
+.+++|.+|...+.. .+..+.+|||.||..|+.+...
T Consensus 815 ep~d~C~~C~~~ll~-~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLI-KPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred cCccchHHhcchhhc-CcceeeeccchHHHHHHHHHHH
Confidence 558999999887742 4567779999999999976554
No 98
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=92.64 E-value=0.074 Score=42.29 Aligned_cols=32 Identities=28% Similarity=0.802 Sum_probs=24.6
Q ss_pred CCCcchHhhHHHHhhC-------------CCCccccccccCCCCh
Q psy12643 85 CKHTFHSTCILPWLEK-------------TSTCPLCRHEFKTDDA 116 (144)
Q Consensus 85 C~h~f~~~Ci~~~~~~-------------~~~CP~Cr~~~~~~~~ 116 (144)
|....|.+|+-+|+.. +-.||+||+.+...+.
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilDV 355 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILDV 355 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeeee
Confidence 5677899999999862 2259999999876543
No 99
>KOG3002|consensus
Probab=92.44 E-value=0.11 Score=40.36 Aligned_cols=46 Identities=24% Similarity=0.531 Sum_probs=33.7
Q ss_pred cccccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccCC
Q psy12643 63 PESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKT 113 (144)
Q Consensus 63 ~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 113 (144)
+-..|+||.+.+. .+..+-.=||..|.+|-. +....||+||.+++.
T Consensus 47 ~lleCPvC~~~l~--~Pi~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 47 DLLDCPVCFNPLS--PPIFQCDNGHLACSSCRT---KVSNKCPTCRLPIGN 92 (299)
T ss_pred hhccCchhhccCc--ccceecCCCcEehhhhhh---hhcccCCcccccccc
Confidence 3678999998873 222333348999999954 467789999999984
No 100
>KOG0298|consensus
Probab=91.18 E-value=0.16 Score=46.14 Aligned_cols=47 Identities=28% Similarity=0.641 Sum_probs=39.4
Q ss_pred ccccccccccccCCC-ceeecCCCCcchHhhHHHHhhCCCCccccccccCC
Q psy12643 64 ESSCPICLKLFLVGE-SAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKT 113 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~-~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 113 (144)
...|.||.+.+ . ...+..|||.+|..|...|+..+..||.|.....+
T Consensus 1153 ~~~c~ic~dil---~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi~~d 1200 (1394)
T KOG0298|consen 1153 HFVCEICLDIL---RNQGGIAGCGHEPCCRCDELWLYASSRCPICKSIKGD 1200 (1394)
T ss_pred ccchHHHHHHH---HhcCCeeeechhHhhhHHHHHHHHhccCcchhhhhhh
Confidence 55899999988 4 45667899999999999999999999999864433
No 101
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=90.97 E-value=0.11 Score=38.96 Aligned_cols=46 Identities=22% Similarity=0.539 Sum_probs=32.5
Q ss_pred ccccccccccc-cCCC-ceeecC-CCCcchHhhHHHHhh-CCCCcc--cccc
Q psy12643 64 ESSCPICLKLF-LVGE-SAKKLD-CKHTFHSTCILPWLE-KTSTCP--LCRH 109 (144)
Q Consensus 64 ~~~C~IC~~~~-~~~~-~~~~~~-C~h~f~~~Ci~~~~~-~~~~CP--~Cr~ 109 (144)
+..|+||.... ..++ ...+-| |-|.+|.+|+.+.+. +...|| -|.+
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 66899998632 2212 222336 999999999999998 555798 6755
No 102
>KOG0827|consensus
Probab=90.92 E-value=0.023 Score=45.24 Aligned_cols=57 Identities=21% Similarity=0.490 Sum_probs=44.2
Q ss_pred ccccccccccccCC-CceeecCCCCcchHhhHHHHhhCCCCccccccccCCCChhHHH
Q psy12643 64 ESSCPICLKLFLVG-ESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTDDADYEA 120 (144)
Q Consensus 64 ~~~C~IC~~~~~~~-~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 120 (144)
..+|+||.+.++.. .....+.|||.+|..|+..|+.....||.|+..+.....-.+.
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~~~e~k~ 253 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPKNGFEEKL 253 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhhhhHHHHH
Confidence 66799998877432 3344567999999999999999988999999988765444433
No 103
>KOG0309|consensus
Probab=90.37 E-value=0.18 Score=43.58 Aligned_cols=42 Identities=29% Similarity=0.677 Sum_probs=30.4
Q ss_pred ccccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccc
Q psy12643 64 ESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPL 106 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~ 106 (144)
...|.||.... .+...+...|+|..|.+|...|+.....||.
T Consensus 1028 ~~~C~~C~l~V-~gss~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1028 TFQCAICHLAV-RGSSNFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred eeeeeeEeeEe-eccchhhccccccccHHHHHHHHhcCCcCCC
Confidence 45577775443 2233344579999999999999998888875
No 104
>KOG1100|consensus
Probab=90.13 E-value=0.13 Score=37.96 Aligned_cols=40 Identities=25% Similarity=0.588 Sum_probs=30.3
Q ss_pred cccccccccCCCceeecCCCC-cchHhhHHHHhhCCCCccccccccCC
Q psy12643 67 CPICLKLFLVGESAKKLDCKH-TFHSTCILPWLEKTSTCPLCRHEFKT 113 (144)
Q Consensus 67 C~IC~~~~~~~~~~~~~~C~h-~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 113 (144)
|-.|.+.- .....+||.| .+|..|-.. ...||+|+.....
T Consensus 161 Cr~C~~~~---~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 161 CRKCGERE---ATVLLLPCRHLCLCGICDES----LRICPICRSPKTS 201 (207)
T ss_pred ceecCcCC---ceEEeecccceEeccccccc----CccCCCCcChhhc
Confidence 99997775 6777889998 778888432 5569999876544
No 105
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=90.02 E-value=0.34 Score=27.92 Aligned_cols=33 Identities=27% Similarity=0.628 Sum_probs=26.7
Q ss_pred ccccccccccccCCCceeecC-CCCcchHhhHHH
Q psy12643 64 ESSCPICLKLFLVGESAKKLD-CKHTFHSTCILP 96 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~-C~h~f~~~Ci~~ 96 (144)
...|.+|-+.|..++..++-+ |+-.+|..|...
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 567999999997667666665 999999999643
No 106
>KOG2932|consensus
Probab=89.62 E-value=0.18 Score=39.29 Aligned_cols=42 Identities=26% Similarity=0.593 Sum_probs=26.9
Q ss_pred ccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCcccccccc
Q psy12643 66 SCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEF 111 (144)
Q Consensus 66 ~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~ 111 (144)
.|.-|-..+. ..-+.++|.|.||.+|.. +...+.||.|.-.+
T Consensus 92 fCd~Cd~PI~--IYGRmIPCkHvFCl~CAr--~~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 92 FCDRCDFPIA--IYGRMIPCKHVFCLECAR--SDSDKICPLCDDRV 133 (389)
T ss_pred eecccCCcce--eeecccccchhhhhhhhh--cCccccCcCcccHH
Confidence 3666643331 222345999999999953 34567899996544
No 107
>KOG3899|consensus
Probab=88.01 E-value=0.27 Score=38.03 Aligned_cols=31 Identities=26% Similarity=0.761 Sum_probs=23.8
Q ss_pred CCCcchHhhHHHHhh-------------CCCCccccccccCCCC
Q psy12643 85 CKHTFHSTCILPWLE-------------KTSTCPLCRHEFKTDD 115 (144)
Q Consensus 85 C~h~f~~~Ci~~~~~-------------~~~~CP~Cr~~~~~~~ 115 (144)
|....|.+|+-+|+. ++-+||+||+.+...+
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~d 368 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRD 368 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEee
Confidence 456789999998886 2336999999987654
No 108
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=87.17 E-value=0.28 Score=42.84 Aligned_cols=56 Identities=30% Similarity=0.679 Sum_probs=40.0
Q ss_pred CCcccccccccccccCCCceeecCCC-----CcchHhhHHHHhh--CCCCccccccccCCCChh
Q psy12643 61 HEPESSCPICLKLFLVGESAKKLDCK-----HTFHSTCILPWLE--KTSTCPLCRHEFKTDDAD 117 (144)
Q Consensus 61 ~~~~~~C~IC~~~~~~~~~~~~~~C~-----h~f~~~Ci~~~~~--~~~~CP~Cr~~~~~~~~~ 117 (144)
.+++..|.||..+-.. +.+..-||. ...|..|+.+|+. ....|-.|..++..++..
T Consensus 9 N~d~~~CRICr~e~~~-d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~IY 71 (1175)
T COG5183 9 NEDKRSCRICRTEDIR-DDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDIY 71 (1175)
T ss_pred CccchhceeecCCCCC-CCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeeec
Confidence 4557899999877533 334344653 3579999999998 445799999987766554
No 109
>KOG3113|consensus
Probab=87.00 E-value=2.3 Score=32.31 Aligned_cols=52 Identities=19% Similarity=0.285 Sum_probs=38.4
Q ss_pred ccccccccccccCCCce-eecCCCCcchHhhHHHHhhCCCCccccccccCCCChh
Q psy12643 64 ESSCPICLKLFLVGESA-KKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTDDAD 117 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~-~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 117 (144)
.+.|+|-..+++-.... ...+|||.|-...+.+. ....|++|.+.+..++.+
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~dvI 163 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQEDDVI 163 (293)
T ss_pred eeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccccCeE
Confidence 67799887777322222 23379999999887765 577899999998887766
No 110
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=86.59 E-value=0.45 Score=37.18 Aligned_cols=46 Identities=20% Similarity=0.422 Sum_probs=35.6
Q ss_pred ccccccccccccCCCceeecCCCCcchHhhHHHHhh---CCCCcccccc
Q psy12643 64 ESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLE---KTSTCPLCRH 109 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~---~~~~CP~Cr~ 109 (144)
-+.|++--+......+|+.+.|||..-...+....+ ....||.|--
T Consensus 336 ~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 336 LFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred eeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 677888777666667888999999999998887665 2347999943
No 111
>KOG3053|consensus
Probab=83.91 E-value=0.7 Score=35.11 Aligned_cols=54 Identities=26% Similarity=0.608 Sum_probs=35.0
Q ss_pred cCCCcccccccccccccCCCce-eecCC-----CCcchHhhHHHHhhCC--------CCccccccccC
Q psy12643 59 TSHEPESSCPICLKLFLVGESA-KKLDC-----KHTFHSTCILPWLEKT--------STCPLCRHEFK 112 (144)
Q Consensus 59 ~~~~~~~~C~IC~~~~~~~~~~-~~~~C-----~h~f~~~Ci~~~~~~~--------~~CP~Cr~~~~ 112 (144)
...+.+..|-||...=++.... -+-|| .|..|.+|+..|+..+ -.||-|+....
T Consensus 15 ~~~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 15 DNQELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred CccccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 3345577899997653211111 22365 4789999999999722 25999998653
No 112
>KOG3579|consensus
Probab=83.58 E-value=0.67 Score=35.76 Aligned_cols=50 Identities=16% Similarity=0.337 Sum_probs=34.1
Q ss_pred CcccccccccccccCCCceeecC--CCCcchHhhHHHHhhCCC-----------CccccccccC
Q psy12643 62 EPESSCPICLKLFLVGESAKKLD--CKHTFHSTCILPWLEKTS-----------TCPLCRHEFK 112 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~~--C~h~f~~~Ci~~~~~~~~-----------~CP~Cr~~~~ 112 (144)
.....|.+|.|.++. .+.++.| =.|.||.-|-.+.++.+. +||+....++
T Consensus 266 ~apLcCTLC~ERLED-THFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPSGdkCPLvgS~vP 328 (352)
T KOG3579|consen 266 SAPLCCTLCHERLED-THFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPSGDKCPLVGSNVP 328 (352)
T ss_pred CCceeehhhhhhhcc-CceeecCCCcccceecccCHHHHHhhcCCCceeCCCCCcCcccCCccc
Confidence 336889999999942 3444444 279999999888777332 4777665544
No 113
>KOG4362|consensus
Probab=83.13 E-value=0.33 Score=41.61 Aligned_cols=47 Identities=30% Similarity=0.771 Sum_probs=36.9
Q ss_pred ccccccccccccCCCceeecCCCCcchHhhHHHHhhC---CCCccccccccCC
Q psy12643 64 ESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEK---TSTCPLCRHEFKT 113 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~---~~~CP~Cr~~~~~ 113 (144)
..+|+||...+ ..+..+.|.|.|+..|+..-+.. ...||+|+..+..
T Consensus 21 ~lEc~ic~~~~---~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 21 ILECPICLEHV---KEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred hccCCceeEEe---eccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhh
Confidence 78899999888 66678899999999998765553 3469999865543
No 114
>KOG3161|consensus
Probab=81.98 E-value=0.59 Score=39.91 Aligned_cols=40 Identities=35% Similarity=0.742 Sum_probs=28.9
Q ss_pred ccccccccccccCC-CceeecCCCCcchHhhHHHHhhCCCCcc
Q psy12643 64 ESSCPICLKLFLVG-ESAKKLDCKHTFHSTCILPWLEKTSTCP 105 (144)
Q Consensus 64 ~~~C~IC~~~~~~~-~~~~~~~C~h~f~~~Ci~~~~~~~~~CP 105 (144)
-..|.||+..|... ..++.+-|||..|..|+... ...+||
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~l--yn~scp 51 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLL--YNASCP 51 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhH--hhccCC
Confidence 35689997766332 36677789999999998754 455677
No 115
>KOG4718|consensus
Probab=81.41 E-value=1.1 Score=33.07 Aligned_cols=47 Identities=23% Similarity=0.693 Sum_probs=35.8
Q ss_pred ccccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccC
Q psy12643 64 ESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFK 112 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~ 112 (144)
-..|.+|....- .....-+|+-.+|..|+..++.+...||.|.--+.
T Consensus 181 lk~Cn~Ch~LvI--qg~rCg~c~i~~h~~c~qty~q~~~~cphc~d~w~ 227 (235)
T KOG4718|consen 181 LKNCNLCHCLVI--QGIRCGSCNIQYHRGCIQTYLQRRDICPHCGDLWT 227 (235)
T ss_pred HHHHhHhHHHhh--eeeccCcccchhhhHHHHHHhcccCcCCchhcccC
Confidence 567999988762 22223368888999999999999899999965444
No 116
>KOG3799|consensus
Probab=80.48 E-value=0.49 Score=32.46 Aligned_cols=52 Identities=25% Similarity=0.501 Sum_probs=30.3
Q ss_pred cCCCcccccccccc-cccCCCceeecCCCCcchHhhHHHHhhCCC----Cccccccc
Q psy12643 59 TSHEPESSCPICLK-LFLVGESAKKLDCKHTFHSTCILPWLEKTS----TCPLCRHE 110 (144)
Q Consensus 59 ~~~~~~~~C~IC~~-~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~----~CP~Cr~~ 110 (144)
....++.+|.||+. .|..|.......|.-.||..|--+...+++ .|.+|++.
T Consensus 60 aGv~ddatC~IC~KTKFADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~ 116 (169)
T KOG3799|consen 60 AGVGDDATCGICHKTKFADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQ 116 (169)
T ss_pred cccCcCcchhhhhhcccccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHH
Confidence 34567899999986 343333333344555666666544333333 38888764
No 117
>KOG3039|consensus
Probab=80.30 E-value=1.9 Score=32.67 Aligned_cols=34 Identities=18% Similarity=0.273 Sum_probs=29.7
Q ss_pred cccccccccccccCCCceeecCCCCcchHhhHHHHhh
Q psy12643 63 PESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLE 99 (144)
Q Consensus 63 ~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~ 99 (144)
+-..|++|+..+ ..+++++=||.|+..||.+++-
T Consensus 42 ~FdcCsLtLqPc---~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 42 PFDCCSLTLQPC---RDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred Ccceeeeecccc---cCCccCCCCeeeeHHHHHHHHH
Confidence 367789999888 8899999999999999998865
No 118
>KOG3005|consensus
Probab=78.32 E-value=1.5 Score=33.48 Aligned_cols=49 Identities=27% Similarity=0.544 Sum_probs=32.7
Q ss_pred ccccccccccccCCCceeec----CCCCcchHhhHHHHhh---------CCCCccccccccC
Q psy12643 64 ESSCPICLKLFLVGESAKKL----DCKHTFHSTCILPWLE---------KTSTCPLCRHEFK 112 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~----~C~h~f~~~Ci~~~~~---------~~~~CP~Cr~~~~ 112 (144)
...|.+|...+...+..+.+ .|.-.+|..|+...+. ....||.|++.+.
T Consensus 182 ~~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~~ 243 (276)
T KOG3005|consen 182 NVECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFLS 243 (276)
T ss_pred chhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhceee
Confidence 46899999888432222222 4888999999987443 1235999998443
No 119
>KOG1609|consensus
Probab=77.99 E-value=1.5 Score=33.64 Aligned_cols=51 Identities=22% Similarity=0.490 Sum_probs=36.1
Q ss_pred ccccccccccccCCCc-eeecCCC-----CcchHhhHHHHhh--CCCCccccccccCCC
Q psy12643 64 ESSCPICLKLFLVGES-AKKLDCK-----HTFHSTCILPWLE--KTSTCPLCRHEFKTD 114 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~-~~~~~C~-----h~f~~~Ci~~~~~--~~~~CP~Cr~~~~~~ 114 (144)
+..|.||......... ....+|. ...|..|+..|.. ....|..|...+...
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 4779999987632211 4555663 3569999999998 566799998866543
No 120
>KOG0269|consensus
Probab=77.72 E-value=2.6 Score=36.68 Aligned_cols=44 Identities=25% Similarity=0.608 Sum_probs=30.3
Q ss_pred ccccccccccccCCCceeec--CCCCcchHhhHHHHhhCCCCccc--cccc
Q psy12643 64 ESSCPICLKLFLVGESAKKL--DCKHTFHSTCILPWLEKTSTCPL--CRHE 110 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~--~C~h~f~~~Ci~~~~~~~~~CP~--Cr~~ 110 (144)
...|.+|-..+ .....- -|||..|.+|+..|+.....||. |-..
T Consensus 779 ~~~CtVC~~vi---~G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~~~C~~~ 826 (839)
T KOG0269|consen 779 SAKCTVCDLVI---RGVDVWCQVCGHGGHDSHLKSWFFKASPCAKSICPHL 826 (839)
T ss_pred hcCceeeccee---eeeEeecccccccccHHHHHHHHhcCCCCccccCCcc
Confidence 34566775544 222222 49999999999999998888876 5443
No 121
>KOG1815|consensus
Probab=76.15 E-value=2 Score=35.26 Aligned_cols=37 Identities=24% Similarity=0.571 Sum_probs=29.6
Q ss_pred CCcccccccccccccCCCceeecCCCCcchHhhHHHHhh
Q psy12643 61 HEPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLE 99 (144)
Q Consensus 61 ~~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~ 99 (144)
.....+|.||.+.+.. ....+.|+|.||..|+..++.
T Consensus 67 ~~~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~ 103 (444)
T KOG1815|consen 67 KKGDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLG 103 (444)
T ss_pred CCccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhh
Confidence 3447889999888722 456668999999999999887
No 122
>KOG2068|consensus
Probab=75.73 E-value=2.2 Score=33.51 Aligned_cols=51 Identities=22% Similarity=0.524 Sum_probs=37.5
Q ss_pred ccccccccccccCCC-ceeecCCCCcchHhhHHHHhhCCCCccccccccCCC
Q psy12643 64 ESSCPICLKLFLVGE-SAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTD 114 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~-~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 114 (144)
...|+||.+.....+ ...-.+|++..|..|+.........||.||++....
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~~ 300 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYERN 300 (327)
T ss_pred CCCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccccC
Confidence 578999988763222 223346888888889888888888999999766543
No 123
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=75.72 E-value=2.7 Score=23.68 Aligned_cols=42 Identities=24% Similarity=0.589 Sum_probs=18.2
Q ss_pred cccccccccccCCCceeec-CCCCcchHhhHHHHhh-----CCCCccccccc
Q psy12643 65 SSCPICLKLFLVGESAKKL-DCKHTFHSTCILPWLE-----KTSTCPLCRHE 110 (144)
Q Consensus 65 ~~C~IC~~~~~~~~~~~~~-~C~h~f~~~Ci~~~~~-----~~~~CP~Cr~~ 110 (144)
..|+|....+ ..+++. .|.|.-|.+ +..|+. ..-.||.|.++
T Consensus 3 L~CPls~~~i---~~P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRI---RIPVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB----SSEEEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEE---EeCccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 4688887777 555554 699976543 233443 22369999763
No 124
>KOG0825|consensus
Probab=71.98 E-value=1.9 Score=37.87 Aligned_cols=52 Identities=12% Similarity=0.188 Sum_probs=35.7
Q ss_pred ccccccccccccCCC-ceeec---CCCCcchHhhHHHHhhC------CCCccccccccCCCC
Q psy12643 64 ESSCPICLKLFLVGE-SAKKL---DCKHTFHSTCILPWLEK------TSTCPLCRHEFKTDD 115 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~-~~~~~---~C~h~f~~~Ci~~~~~~------~~~CP~Cr~~~~~~~ 115 (144)
..+|.+|+..+.... ..... .|+|.+|..||..|..+ .-.|++|..-|..+.
T Consensus 96 s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWs 157 (1134)
T KOG0825|consen 96 SDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWS 157 (1134)
T ss_pred ccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhh
Confidence 677889988885421 12233 39999999999999873 224788877665433
No 125
>KOG1812|consensus
Probab=69.88 E-value=2.4 Score=34.18 Aligned_cols=44 Identities=25% Similarity=0.535 Sum_probs=30.8
Q ss_pred cccccccccccc--CCCceeecCCCCcchHhhHHHHhhCCCCcccc
Q psy12643 64 ESSCPICLKLFL--VGESAKKLDCKHTFHSTCILPWLEKTSTCPLC 107 (144)
Q Consensus 64 ~~~C~IC~~~~~--~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~C 107 (144)
-..|++|.-.+. .|...+.-.|+|-||..|...|......|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCc
Confidence 456888876553 33333444599999999999998877766444
No 126
>KOG1829|consensus
Probab=67.13 E-value=2.3 Score=36.06 Aligned_cols=22 Identities=36% Similarity=0.967 Sum_probs=17.3
Q ss_pred cCCCCcchHhhHHHHhhCCCCcccc
Q psy12643 83 LDCKHTFHSTCILPWLEKTSTCPLC 107 (144)
Q Consensus 83 ~~C~h~f~~~Ci~~~~~~~~~CP~C 107 (144)
..|++.||..|+.+ .+..||.|
T Consensus 535 ~~C~avfH~~C~~r---~s~~CPrC 556 (580)
T KOG1829|consen 535 STCLAVFHKKCLRR---KSPCCPRC 556 (580)
T ss_pred HHHHHHHHHHHHhc---cCCCCCch
Confidence 36999999999643 55559999
No 127
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=62.40 E-value=5.8 Score=22.55 Aligned_cols=25 Identities=32% Similarity=0.684 Sum_probs=13.4
Q ss_pred CCCCcchHhhHHHHhhCCCCccccc
Q psy12643 84 DCKHTFHSTCILPWLEKTSTCPLCR 108 (144)
Q Consensus 84 ~C~h~f~~~Ci~~~~~~~~~CP~Cr 108 (144)
.|++.||.+|=.-.=..-..||-|.
T Consensus 26 ~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 26 KCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp TTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CCCCccccCcChhhhccccCCcCCC
Confidence 4899999999532222556799883
No 128
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=61.87 E-value=6.3 Score=22.30 Aligned_cols=13 Identities=31% Similarity=0.991 Sum_probs=6.9
Q ss_pred CccccccccCCCC
Q psy12643 103 TCPLCRHEFKTDD 115 (144)
Q Consensus 103 ~CP~Cr~~~~~~~ 115 (144)
.||+|..+|...+
T Consensus 22 ~CPlC~r~l~~e~ 34 (54)
T PF04423_consen 22 CCPLCGRPLDEEH 34 (54)
T ss_dssp E-TTT--EE-HHH
T ss_pred cCCCCCCCCCHHH
Confidence 7999999987543
No 129
>KOG3842|consensus
Probab=58.96 E-value=9 Score=30.22 Aligned_cols=50 Identities=22% Similarity=0.570 Sum_probs=30.0
Q ss_pred cccccccccccc---------------CCC-ceeecCCCCcchHhhHHHHhh---------CCCCccccccccCC
Q psy12643 64 ESSCPICLKLFL---------------VGE-SAKKLDCKHTFHSTCILPWLE---------KTSTCPLCRHEFKT 113 (144)
Q Consensus 64 ~~~C~IC~~~~~---------------~~~-~~~~~~C~h~f~~~Ci~~~~~---------~~~~CP~Cr~~~~~ 113 (144)
..+|++|...-. .+. .....||||..-..-..-|.. .+..||+|-..+.-
T Consensus 341 ~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 341 ERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 678999986420 111 112238999766666655554 13359999876643
No 130
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=58.10 E-value=16 Score=21.22 Aligned_cols=46 Identities=26% Similarity=0.457 Sum_probs=28.1
Q ss_pred cccccccccccCCC-ceeecCCCCcchHhhHHHHhhCCCCccccccccC
Q psy12643 65 SSCPICLKLFLVGE-SAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFK 112 (144)
Q Consensus 65 ~~C~IC~~~~~~~~-~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~ 112 (144)
..|-.|-..+..+. ...+-+=...||..|....+ ...||.|...+.
T Consensus 6 pnCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l--~~~CPNCgGelv 52 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYICSFECTFCADCAETML--NGVCPNCGGELV 52 (57)
T ss_pred CCccccCCCCCCCCCcceEEeEeCcccHHHHHHHh--cCcCcCCCCccc
Confidence 34666666654333 22222212359999988765 678999987764
No 131
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=54.37 E-value=6.7 Score=23.13 Aligned_cols=34 Identities=26% Similarity=0.463 Sum_probs=16.5
Q ss_pred cccccccccccccCCCceee-cCCCCcchHhhHHH
Q psy12643 63 PESSCPICLKLFLVGESAKK-LDCKHTFHSTCILP 96 (144)
Q Consensus 63 ~~~~C~IC~~~~~~~~~~~~-~~C~h~f~~~Ci~~ 96 (144)
+...|.+|...|........ -.||+.||..|...
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~ 42 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQ 42 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-E
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCC
Confidence 46789999999843222222 26999999999753
No 133
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=53.65 E-value=7.4 Score=21.37 Aligned_cols=42 Identities=26% Similarity=0.565 Sum_probs=24.3
Q ss_pred ccccccccccCCCceee-cCCCCcchHhhHHHHhh------CCCCccccc
Q psy12643 66 SCPICLKLFLVGESAKK-LDCKHTFHSTCILPWLE------KTSTCPLCR 108 (144)
Q Consensus 66 ~C~IC~~~~~~~~~~~~-~~C~h~f~~~Ci~~~~~------~~~~CP~Cr 108 (144)
.|.||..... ....+. -.|+..||..|+..-.. ..-.||.|+
T Consensus 1 ~C~vC~~~~~-~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDD-DGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCT-TSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCC-CCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 3778877332 122222 26999999999753322 233577664
No 134
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=53.23 E-value=5.9 Score=22.40 Aligned_cols=11 Identities=45% Similarity=0.914 Sum_probs=8.5
Q ss_pred ccccccccccc
Q psy12643 64 ESSCPICLKLF 74 (144)
Q Consensus 64 ~~~C~IC~~~~ 74 (144)
.+.|+.|.+.+
T Consensus 2 ~f~CP~C~~~~ 12 (54)
T PF05605_consen 2 SFTCPYCGKGF 12 (54)
T ss_pred CcCCCCCCCcc
Confidence 57899998755
No 135
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=53.03 E-value=1.4 Score=33.96 Aligned_cols=47 Identities=19% Similarity=0.351 Sum_probs=21.0
Q ss_pred cccccccccccccCCCceeecC-----CCCcchHhhHHHHhhCCCCccccccccC
Q psy12643 63 PESSCPICLKLFLVGESAKKLD-----CKHTFHSTCILPWLEKTSTCPLCRHEFK 112 (144)
Q Consensus 63 ~~~~C~IC~~~~~~~~~~~~~~-----C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~ 112 (144)
....|++|-.... -..+.. -.+.+|..|-..|-.....||.|...-.
T Consensus 171 ~~g~CPvCGs~P~---~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~~~ 222 (290)
T PF04216_consen 171 QRGYCPVCGSPPV---LSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNTDH 222 (290)
T ss_dssp T-SS-TTT---EE---EEEEE------EEEEEETTT--EEE--TTS-TTT---SS
T ss_pred cCCcCCCCCCcCc---eEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCCCC
Confidence 3578999987652 111111 1356788888889888888999976543
No 136
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=52.54 E-value=4.6 Score=32.64 Aligned_cols=31 Identities=19% Similarity=0.538 Sum_probs=0.0
Q ss_pred cCCCCcchHhhHHHHhh---------CCCCccccccccCC
Q psy12643 83 LDCKHTFHSTCILPWLE---------KTSTCPLCRHEFKT 113 (144)
Q Consensus 83 ~~C~h~f~~~Ci~~~~~---------~~~~CP~Cr~~~~~ 113 (144)
.||||..-.....-|.. .+..||+|-.++.-
T Consensus 363 ~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 363 NPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ----------------------------------------
T ss_pred cccccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 38999877777666655 12359999888764
No 137
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=50.72 E-value=13 Score=27.24 Aligned_cols=40 Identities=28% Similarity=0.691 Sum_probs=24.7
Q ss_pred cccccccccc-ccCCC---ceee-cCCCCcchHhhHHHHhhCCCCccccc
Q psy12643 64 ESSCPICLKL-FLVGE---SAKK-LDCKHTFHSTCILPWLEKTSTCPLCR 108 (144)
Q Consensus 64 ~~~C~IC~~~-~~~~~---~~~~-~~C~h~f~~~Ci~~~~~~~~~CP~Cr 108 (144)
.+.|-+|... .--+. .... -.|+..||..|.. ...||.|.
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~-----~~~CpkC~ 196 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR-----KKSCPKCA 196 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC-----CCCCCCcH
Confidence 6778888642 10111 1122 2599999999964 26799994
No 138
>KOG2807|consensus
Probab=50.17 E-value=11 Score=29.75 Aligned_cols=43 Identities=26% Similarity=0.471 Sum_probs=25.2
Q ss_pred ccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccc
Q psy12643 66 SCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCR 108 (144)
Q Consensus 66 ~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr 108 (144)
.|-.|..........+.-.|.+.||.+|-.-.-..-..||.|.
T Consensus 332 ~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCe 374 (378)
T KOG2807|consen 332 FCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCE 374 (378)
T ss_pred ceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcC
Confidence 3777765553322223335888888888543323455688885
No 139
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=48.78 E-value=10 Score=18.95 Aligned_cols=36 Identities=22% Similarity=0.492 Sum_probs=20.0
Q ss_pred cccccccccCCCceeecCCCCcchHhhHHHHhhCCCCcccccccc
Q psy12643 67 CPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEF 111 (144)
Q Consensus 67 C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~ 111 (144)
|..|.+.+... ......=+..||..|+ .|..|+.++
T Consensus 2 C~~C~~~i~~~-~~~~~~~~~~~H~~Cf--------~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGG-ELVLRALGKVWHPECF--------KCSKCGKPL 37 (39)
T ss_pred ccccCCcccCC-cEEEEeCCccccccCC--------CCcccCCcC
Confidence 66776665322 1222234566777764 377777655
No 140
>KOG2789|consensus
Probab=48.19 E-value=35 Score=27.87 Aligned_cols=32 Identities=38% Similarity=0.874 Sum_probs=22.7
Q ss_pred ccccccccccccCCCceeec--CCCCcchHhhHHHHh
Q psy12643 64 ESSCPICLKLFLVGESAKKL--DCKHTFHSTCILPWL 98 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~--~C~h~f~~~Ci~~~~ 98 (144)
..+|+||+.++ .....+ -|.-..|..|+.++-
T Consensus 74 ~~ecpicflyy---ps~~n~~rcC~~~Ic~ecf~~~~ 107 (482)
T KOG2789|consen 74 KTECPICFLYY---PSAKNLVRCCSETICGECFAPFG 107 (482)
T ss_pred cccCceeeeec---ccccchhhhhccchhhhheeccc
Confidence 57999999887 332222 478889999986543
No 141
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=48.17 E-value=1.3 Score=26.97 Aligned_cols=39 Identities=23% Similarity=0.549 Sum_probs=16.5
Q ss_pred cccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCcccccccc
Q psy12643 65 SSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEF 111 (144)
Q Consensus 65 ~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~ 111 (144)
..|+.|...+.. .-++..|..|-.. +.....||-|.+++
T Consensus 2 ~~CP~C~~~L~~-------~~~~~~C~~C~~~-~~~~a~CPdC~~~L 40 (70)
T PF07191_consen 2 NTCPKCQQELEW-------QGGHYHCEACQKD-YKKEAFCPDCGQPL 40 (70)
T ss_dssp -B-SSS-SBEEE-------ETTEEEETTT--E-EEEEEE-TTT-SB-
T ss_pred CcCCCCCCccEE-------eCCEEECcccccc-ceecccCCCcccHH
Confidence 467888766521 1155566666443 22344577776655
No 142
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=46.80 E-value=8.1 Score=21.65 Aligned_cols=40 Identities=20% Similarity=0.460 Sum_probs=20.2
Q ss_pred cccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccCCCC
Q psy12643 67 CPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTDD 115 (144)
Q Consensus 67 C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 115 (144)
|..|...+.. .......-+..||..|+ .|-.|+.++....
T Consensus 1 C~~C~~~I~~-~~~~~~~~~~~~H~~Cf--------~C~~C~~~l~~~~ 40 (58)
T PF00412_consen 1 CARCGKPIYG-TEIVIKAMGKFWHPECF--------KCSKCGKPLNDGD 40 (58)
T ss_dssp BTTTSSBESS-SSEEEEETTEEEETTTS--------BETTTTCBTTTSS
T ss_pred CCCCCCCccC-cEEEEEeCCcEEEcccc--------ccCCCCCccCCCe
Confidence 4455555531 12221234556666663 3677776665543
No 143
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=46.63 E-value=59 Score=19.01 Aligned_cols=17 Identities=24% Similarity=0.696 Sum_probs=12.1
Q ss_pred CCCccccccccCCCChh
Q psy12643 101 TSTCPLCRHEFKTDDAD 117 (144)
Q Consensus 101 ~~~CP~Cr~~~~~~~~~ 117 (144)
++-||.|.++++.+...
T Consensus 3 HkHC~~CG~~Ip~~~~f 19 (59)
T PF09889_consen 3 HKHCPVCGKPIPPDESF 19 (59)
T ss_pred CCcCCcCCCcCCcchhh
Confidence 55688998888765443
No 144
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=46.47 E-value=16 Score=20.51 Aligned_cols=34 Identities=29% Similarity=0.463 Sum_probs=22.2
Q ss_pred cccccccccccCCCce-eecCCCCcchHhhHHHHh
Q psy12643 65 SSCPICLKLFLVGESA-KKLDCKHTFHSTCILPWL 98 (144)
Q Consensus 65 ~~C~IC~~~~~~~~~~-~~~~C~h~f~~~Ci~~~~ 98 (144)
..|.+|...|...... .-..||++||..|.....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 4688898877432211 123699999999976543
No 145
>KOG4185|consensus
Probab=44.93 E-value=4.2 Score=31.24 Aligned_cols=47 Identities=28% Similarity=0.567 Sum_probs=35.5
Q ss_pred ccccccccccccCC---CceeecC--------CCCcchHhhHHHHhhCC-CCccccccc
Q psy12643 64 ESSCPICLKLFLVG---ESAKKLD--------CKHTFHSTCILPWLEKT-STCPLCRHE 110 (144)
Q Consensus 64 ~~~C~IC~~~~~~~---~~~~~~~--------C~h~f~~~Ci~~~~~~~-~~CP~Cr~~ 110 (144)
...|.||...++.. ..+.++. |+|..|..|+...+... ..||.|+..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 46699999888522 2445556 99999999999887643 589999864
No 146
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=44.81 E-value=14 Score=22.18 Aligned_cols=12 Identities=25% Similarity=0.863 Sum_probs=8.6
Q ss_pred cchHhhHHHHhh
Q psy12643 88 TFHSTCILPWLE 99 (144)
Q Consensus 88 ~f~~~Ci~~~~~ 99 (144)
.||..|+..|..
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999976
No 147
>KOG2066|consensus
Probab=44.56 E-value=9 Score=33.69 Aligned_cols=44 Identities=23% Similarity=0.580 Sum_probs=29.0
Q ss_pred ccccccccccccCC----CceeecCCCCcchHhhHHHHhhCCCCccccc
Q psy12643 64 ESSCPICLKLFLVG----ESAKKLDCKHTFHSTCILPWLEKTSTCPLCR 108 (144)
Q Consensus 64 ~~~C~IC~~~~~~~----~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr 108 (144)
...|..|.+..... ...+++-|+|.||..|+.-..-+.. |..|.
T Consensus 784 e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~~ 831 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIES 831 (846)
T ss_pred hhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChhh
Confidence 45788888755321 3456678999999999865544333 54443
No 148
>KOG2231|consensus
Probab=43.98 E-value=18 Score=31.37 Aligned_cols=43 Identities=30% Similarity=0.688 Sum_probs=31.9
Q ss_pred ccccccccccCCCceeecCCCC-cchHhhHHHHhh--C----CCCcccccccc
Q psy12643 66 SCPICLKLFLVGESAKKLDCKH-TFHSTCILPWLE--K----TSTCPLCRHEF 111 (144)
Q Consensus 66 ~C~IC~~~~~~~~~~~~~~C~h-~f~~~Ci~~~~~--~----~~~CP~Cr~~~ 111 (144)
.|.||-..+ +-...-.|+| ..|..|..+... . ...||+||..+
T Consensus 2 ~c~ic~~s~---~~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~ 51 (669)
T KOG2231|consen 2 SCAICAFSP---DFVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREV 51 (669)
T ss_pred CcceeecCc---cccccccccccccchhhhhhhhhhcccccccccCcccccce
Confidence 589997766 5555567999 899999877664 2 34579999854
No 149
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=43.92 E-value=39 Score=21.01 Aligned_cols=51 Identities=22% Similarity=0.417 Sum_probs=18.6
Q ss_pred cccccccccccccCCC--ceeec--CCCCcchHhhHHHHh-hCCCCccccccccCC
Q psy12643 63 PESSCPICLKLFLVGE--SAKKL--DCKHTFHSTCILPWL-EKTSTCPLCRHEFKT 113 (144)
Q Consensus 63 ~~~~C~IC~~~~~~~~--~~~~~--~C~h~f~~~Ci~~~~-~~~~~CP~Cr~~~~~ 113 (144)
....|.||-+...... .+.+. -|+--.|..|..--. .....||-|+..+..
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 3567999988663221 11111 477778999975323 367789999976643
No 150
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=43.45 E-value=26 Score=22.27 Aligned_cols=44 Identities=23% Similarity=0.351 Sum_probs=28.1
Q ss_pred ccccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccCCCChhHH
Q psy12643 64 ESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTDDADYE 119 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 119 (144)
...|+-|...+. -....| +..|+-.+..|..|+++++......|
T Consensus 33 rS~C~~C~~~L~---~~~lIP---------i~S~l~lrGrCr~C~~~I~~~y~l~E 76 (92)
T PF06750_consen 33 RSHCPHCGHPLS---WWDLIP---------ILSYLLLRGRCRYCGAPIPPRYPLIE 76 (92)
T ss_pred CCcCcCCCCcCc---ccccch---------HHHHHHhCCCCcccCCCCChHHHHHH
Confidence 456777766652 111112 45677788899999999986554443
No 151
>KOG2071|consensus
Probab=42.48 E-value=13 Score=31.55 Aligned_cols=45 Identities=36% Similarity=0.570 Sum_probs=28.1
Q ss_pred hhccccCC-CcccccccccccccCC----C------ceeecCCCCcchHhhHHHHh
Q psy12643 54 SLQEVTSH-EPESSCPICLKLFLVG----E------SAKKLDCKHTFHSTCILPWL 98 (144)
Q Consensus 54 ~~~~~~~~-~~~~~C~IC~~~~~~~----~------~~~~~~C~h~f~~~Ci~~~~ 98 (144)
+...++.. +....|+||.+.|..- . ..+.+.=|.+||..|+..-.
T Consensus 502 k~~~Vp~d~e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le~G~ifH~~Cl~e~~ 557 (579)
T KOG2071|consen 502 KYELVPADSERQASCPICQEKFEVVFDQEEDLWMYKDAVYLEFGRIFHSKCLSEKR 557 (579)
T ss_pred cceecccCcccccCCcccccccceeecchhhheeecceeeeccCceeeccccchHH
Confidence 34444444 5678899999988422 1 11122348899999986543
No 152
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=41.79 E-value=29 Score=22.37 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=27.5
Q ss_pred ccccccccccccCCCceeecCCCCcchHhhHHHHhh
Q psy12643 64 ESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLE 99 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~ 99 (144)
...|.||-.....|+..+.++ .-..|..|+.+-..
T Consensus 6 ewkC~VCg~~iieGqkFTF~~-kGsVH~eCl~~s~~ 40 (103)
T COG4847 6 EWKCYVCGGTIIEGQKFTFTK-KGSVHYECLAESKR 40 (103)
T ss_pred eeeEeeeCCEeeeccEEEEee-CCcchHHHHHHHHh
Confidence 578999999998888877777 44589999876443
No 153
>KOG0824|consensus
Probab=40.97 E-value=24 Score=27.64 Aligned_cols=47 Identities=23% Similarity=0.579 Sum_probs=35.8
Q ss_pred CcccccccccccccCCCceeec-CCCCcchHhhHHHHhhCCCCcccccccc
Q psy12643 62 EPESSCPICLKLFLVGESAKKL-DCKHTFHSTCILPWLEKTSTCPLCRHEF 111 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~-~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~ 111 (144)
.+...|.||...+ ..+... .|.|.|+..|...|....+.|+.|+...
T Consensus 103 ~~~~~~~~~~g~l---~vpt~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~ 150 (324)
T KOG0824|consen 103 QDHDICYICYGKL---TVPTRIQGCWHQFCYVCPKSNFAMGNDCPDCRGKI 150 (324)
T ss_pred CCccceeeeeeeE---EecccccCceeeeeecCCchhhhhhhccchhhcCc
Confidence 3467788898877 433333 4999999999999998888888887754
No 154
>PF14353 CpXC: CpXC protein
Probab=40.79 E-value=22 Score=23.71 Aligned_cols=46 Identities=24% Similarity=0.393 Sum_probs=21.8
Q ss_pred cccccccccccCCCceeecCCCCcchHhhHHHHhh---CCCCccccccccCC
Q psy12643 65 SSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLE---KTSTCPLCRHEFKT 113 (144)
Q Consensus 65 ~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~---~~~~CP~Cr~~~~~ 113 (144)
.+|+-|...+.......+ .-.....-....+. ...+||.|...+..
T Consensus 2 itCP~C~~~~~~~v~~~I---~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSI---NADEDPELKEKILDGSLFSFTCPSCGHKFRL 50 (128)
T ss_pred cCCCCCCCeeEEEEEeEE---cCcCCHHHHHHHHcCCcCEEECCCCCCceec
Confidence 468888877632111111 11111222223333 23469999886543
No 155
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=40.58 E-value=7.4 Score=30.46 Aligned_cols=45 Identities=18% Similarity=0.411 Sum_probs=29.0
Q ss_pred ccccccccccccCCCceeec---CC--CCcchHhhHHHHhhCCCCccccccc
Q psy12643 64 ESSCPICLKLFLVGESAKKL---DC--KHTFHSTCILPWLEKTSTCPLCRHE 110 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~---~C--~h~f~~~Ci~~~~~~~~~CP~Cr~~ 110 (144)
...|++|-.....+. +.. .- .+.+|..|-..|-.....||.|...
T Consensus 184 ~~~CPvCGs~P~~s~--~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 184 RTLCPACGSPPVASM--VRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCcCCCCCChhhhhh--hcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 458999987652111 111 12 2456777888888888889999764
No 156
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG0802|consensus
Probab=37.11 E-value=18 Score=30.54 Aligned_cols=44 Identities=36% Similarity=0.876 Sum_probs=33.1
Q ss_pred ccccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccCCC
Q psy12643 64 ESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTD 114 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 114 (144)
...|.||.... .....+|. |..|+..|...+..||.|+..+..+
T Consensus 479 ~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~~ 522 (543)
T KOG0802|consen 479 NDVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYMKED 522 (543)
T ss_pred cCcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhhhcc
Confidence 56788887765 33445666 7888999999999999998866443
No 158
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=36.78 E-value=17 Score=24.08 Aligned_cols=46 Identities=28% Similarity=0.525 Sum_probs=26.5
Q ss_pred cccccccccccccCC--CceeecCCCCcchHhhHHHHhhCCC--Ccccccc
Q psy12643 63 PESSCPICLKLFLVG--ESAKKLDCKHTFHSTCILPWLEKTS--TCPLCRH 109 (144)
Q Consensus 63 ~~~~C~IC~~~~~~~--~~~~~~~C~h~f~~~Ci~~~~~~~~--~CP~Cr~ 109 (144)
....|.+|...|..- ....-..|.|.+|..|-.. ..... .|.+|.+
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHH
Confidence 467899998866322 2334457999999998533 11111 4777743
No 159
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=36.68 E-value=14 Score=28.99 Aligned_cols=45 Identities=16% Similarity=0.451 Sum_probs=29.7
Q ss_pred cccccccccccccCCCceeec--CC--CCcchHhhHHHHhhCCCCcccccc
Q psy12643 63 PESSCPICLKLFLVGESAKKL--DC--KHTFHSTCILPWLEKTSTCPLCRH 109 (144)
Q Consensus 63 ~~~~C~IC~~~~~~~~~~~~~--~C--~h~f~~~Ci~~~~~~~~~CP~Cr~ 109 (144)
....|++|-.....+ .+.. .- .+..|..|-..|-.....||.|..
T Consensus 186 ~~~~CPvCGs~P~~s--~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSS--VVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhh--eeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 467899998765211 1111 12 245677788888888888999975
No 160
>PLN02195 cellulose synthase A
Probab=36.38 E-value=32 Score=31.21 Aligned_cols=48 Identities=17% Similarity=0.413 Sum_probs=32.8
Q ss_pred ccccccccccccCC---Cceeec-CCCCcchHhhHHHHhh--CCCCccccccccC
Q psy12643 64 ESSCPICLKLFLVG---ESAKKL-DCKHTFHSTCILPWLE--KTSTCPLCRHEFK 112 (144)
Q Consensus 64 ~~~C~IC~~~~~~~---~~~~~~-~C~h~f~~~Ci~~~~~--~~~~CP~Cr~~~~ 112 (144)
...|.||-+..... +..+.. -|+--.|..|. ++-. .+..||-|+..+.
T Consensus 6 ~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCy-eyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 6 APICATCGEEVGVDSNGEAFVACHECSYPLCKACL-EYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CccceecccccCcCCCCCeEEEeccCCCccccchh-hhhhhcCCccCCccCCccc
Confidence 45799999866322 222222 48888999998 3333 5667999999887
No 161
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=36.11 E-value=26 Score=26.50 Aligned_cols=25 Identities=24% Similarity=0.533 Sum_probs=17.0
Q ss_pred cccccccccccCCCceeecCCCCcc
Q psy12643 65 SSCPICLKLFLVGESAKKLDCKHTF 89 (144)
Q Consensus 65 ~~C~IC~~~~~~~~~~~~~~C~h~f 89 (144)
..|++|...+...........+|.|
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~~h~f 27 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICPQNHQF 27 (272)
T ss_pred ccCCCCCcchhcCCCEEEcCCCCCC
Confidence 5799999988544443344557877
No 162
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=35.12 E-value=25 Score=18.24 Aligned_cols=12 Identities=42% Similarity=0.888 Sum_probs=7.9
Q ss_pred cccccccccccC
Q psy12643 65 SSCPICLKLFLV 76 (144)
Q Consensus 65 ~~C~IC~~~~~~ 76 (144)
.+|+-|...|..
T Consensus 3 i~CP~C~~~f~v 14 (37)
T PF13719_consen 3 ITCPNCQTRFRV 14 (37)
T ss_pred EECCCCCceEEc
Confidence 467777777643
No 163
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=34.66 E-value=76 Score=20.70 Aligned_cols=24 Identities=25% Similarity=0.632 Sum_probs=17.0
Q ss_pred CCcchHhhHHHHhhC---------CCCcccccc
Q psy12643 86 KHTFHSTCILPWLEK---------TSTCPLCRH 109 (144)
Q Consensus 86 ~h~f~~~Ci~~~~~~---------~~~CP~Cr~ 109 (144)
.-.||..||...... .-.||.||.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 667999998766542 225888876
No 164
>KOG2068|consensus
Probab=33.81 E-value=23 Score=27.96 Aligned_cols=27 Identities=22% Similarity=0.516 Sum_probs=18.2
Q ss_pred CCCCccccccccCCCChhHHHHHHHHH
Q psy12643 100 KTSTCPLCRHEFKTDDADYEAYKVQKK 126 (144)
Q Consensus 100 ~~~~CP~Cr~~~~~~~~~~~~~~~~~~ 126 (144)
....||.||+.+.....++........
T Consensus 18 ~~grcpncr~ky~e~ki~~r~~~~~~l 44 (327)
T KOG2068|consen 18 KKGRCPNCRTKYKEEKIVLRRVQWESL 44 (327)
T ss_pred cccCCccccCccchhhhccccccHHHH
Confidence 346799999999887766544433333
No 165
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=33.63 E-value=28 Score=19.63 Aligned_cols=22 Identities=23% Similarity=0.776 Sum_probs=11.3
Q ss_pred CCCcchHhhHHHHhhCCCCcccc
Q psy12643 85 CKHTFHSTCILPWLEKTSTCPLC 107 (144)
Q Consensus 85 C~h~f~~~Ci~~~~~~~~~CP~C 107 (144)
|||.|-.. +.........||.|
T Consensus 34 Cgh~w~~~-v~~R~~~~~~CP~C 55 (55)
T PF14311_consen 34 CGHEWKAS-VNDRTRRGKGCPYC 55 (55)
T ss_pred CCCeeEcc-HhhhccCCCCCCCC
Confidence 56654432 22222455678887
No 166
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=32.78 E-value=4.9 Score=20.19 Aligned_cols=23 Identities=35% Similarity=0.713 Sum_probs=9.1
Q ss_pred CcchHhhHHHHhh----CCCCcccccc
Q psy12643 87 HTFHSTCILPWLE----KTSTCPLCRH 109 (144)
Q Consensus 87 h~f~~~Ci~~~~~----~~~~CP~Cr~ 109 (144)
|.||..|-.+... ....||.|..
T Consensus 3 ~rfC~~CG~~t~~~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 3 HRFCGRCGAPTKPAPGGWARRCPSCGH 29 (32)
T ss_dssp TSB-TTT--BEEE-SSSS-EEESSSS-
T ss_pred CcccCcCCccccCCCCcCEeECCCCcC
Confidence 4556656543332 2234776654
No 167
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.45 E-value=50 Score=21.95 Aligned_cols=45 Identities=24% Similarity=0.328 Sum_probs=29.9
Q ss_pred ccccccccccccCCC-----------ceeecCCCCcchHhhHHHHhhCCCCccccc
Q psy12643 64 ESSCPICLKLFLVGE-----------SAKKLDCKHTFHSTCILPWLEKTSTCPLCR 108 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~-----------~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr 108 (144)
...|--|+..|.... .-.-..|.+.||.+|=.-+-..-..||-|.
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 345999988774221 011235899999999665555667799985
No 168
>PLN02189 cellulose synthase
Probab=32.33 E-value=44 Score=30.63 Aligned_cols=49 Identities=24% Similarity=0.503 Sum_probs=32.7
Q ss_pred ccccccccccccC---CCceeec-CCCCcchHhhHHHHh-hCCCCccccccccC
Q psy12643 64 ESSCPICLKLFLV---GESAKKL-DCKHTFHSTCILPWL-EKTSTCPLCRHEFK 112 (144)
Q Consensus 64 ~~~C~IC~~~~~~---~~~~~~~-~C~h~f~~~Ci~~~~-~~~~~CP~Cr~~~~ 112 (144)
...|.||-+.... |+..+.. -|+--.|..|..--. ..+..||-|+..+.
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 5589999998642 2222222 377778999984222 26668999999775
No 169
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=31.42 E-value=12 Score=18.00 Aligned_cols=6 Identities=50% Similarity=1.281 Sum_probs=2.5
Q ss_pred cccccc
Q psy12643 67 CPICLK 72 (144)
Q Consensus 67 C~IC~~ 72 (144)
|+-|..
T Consensus 3 CP~C~~ 8 (26)
T PF10571_consen 3 CPECGA 8 (26)
T ss_pred CCCCcC
Confidence 444433
No 170
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=31.13 E-value=41 Score=25.26 Aligned_cols=27 Identities=19% Similarity=0.513 Sum_probs=19.7
Q ss_pred CcchHhhHHHHhhCCCCccccccccCC
Q psy12643 87 HTFHSTCILPWLEKTSTCPLCRHEFKT 113 (144)
Q Consensus 87 h~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 113 (144)
..-|.+|....=.....||+|++.-.+
T Consensus 194 MK~C~sC~qqIHRNAPiCPlCK~KsRS 220 (230)
T PF10146_consen 194 MKTCQSCHQQIHRNAPICPLCKAKSRS 220 (230)
T ss_pred cchhHhHHHHHhcCCCCCccccccccc
Confidence 346888877765567789999886544
No 171
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=30.85 E-value=8.7 Score=18.33 Aligned_cols=7 Identities=43% Similarity=1.122 Sum_probs=3.0
Q ss_pred Ccccccc
Q psy12643 103 TCPLCRH 109 (144)
Q Consensus 103 ~CP~Cr~ 109 (144)
.||.|.+
T Consensus 18 fC~~CG~ 24 (26)
T PF13248_consen 18 FCPNCGA 24 (26)
T ss_pred cChhhCC
Confidence 3444433
No 172
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=30.65 E-value=41 Score=21.62 Aligned_cols=33 Identities=33% Similarity=0.553 Sum_probs=21.7
Q ss_pred CcccccccccccccCCCceeec--CCCCcchHhhHHH
Q psy12643 62 EPESSCPICLKLFLVGESAKKL--DCKHTFHSTCILP 96 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~--~C~h~f~~~Ci~~ 96 (144)
.....|.||.... |....-. .|...||..|...
T Consensus 53 ~~~~~C~iC~~~~--G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 53 RFKLKCSICGKSG--GACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred hcCCcCcCCCCCC--ceeEEcCCCCCCcCCCHHHHHH
Confidence 3478899997762 1221122 4889999999754
No 173
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=30.41 E-value=17 Score=22.42 Aligned_cols=36 Identities=22% Similarity=0.414 Sum_probs=22.1
Q ss_pred CCcccccccccccccCCCceeecCCCCcchHhhHHH
Q psy12643 61 HEPESSCPICLKLFLVGESAKKLDCKHTFHSTCILP 96 (144)
Q Consensus 61 ~~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~ 96 (144)
......|.+|.........-..-.|...||..|...
T Consensus 33 ~~~~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 33 RRRKLKCSICKKKGGACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred HHhCCCCcCCCCCCCeEEEEeCCCCCcEEChHHHcc
Confidence 344778999976521101112225999999999753
No 174
>KOG4451|consensus
Probab=30.06 E-value=41 Score=25.37 Aligned_cols=26 Identities=19% Similarity=0.549 Sum_probs=19.4
Q ss_pred cchHhhHHHHhhCCCCccccccccCC
Q psy12643 88 TFHSTCILPWLEKTSTCPLCRHEFKT 113 (144)
Q Consensus 88 ~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 113 (144)
..|.+|....-.....||+|+....+
T Consensus 250 K~ClsChqqIHRNAPiCPlCKaKsRS 275 (286)
T KOG4451|consen 250 KVCLSCHQQIHRNAPICPLCKAKSRS 275 (286)
T ss_pred hHHHHHHHHHhcCCCCCcchhhcccc
Confidence 46778877766677899999876544
No 175
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=29.40 E-value=29 Score=23.81 Aligned_cols=21 Identities=24% Similarity=0.559 Sum_probs=13.7
Q ss_pred cccccccCCCceeecCCCCcchHh
Q psy12643 69 ICLKLFLVGESAKKLDCKHTFHST 92 (144)
Q Consensus 69 IC~~~~~~~~~~~~~~C~h~f~~~ 92 (144)
||+..- ...+...|||.||..
T Consensus 62 i~qs~~---~rv~rcecghsf~d~ 82 (165)
T COG4647 62 ICQSAQ---KRVIRCECGHSFGDY 82 (165)
T ss_pred EEeccc---ccEEEEeccccccCh
Confidence 555442 345666899999864
No 176
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=29.19 E-value=52 Score=30.29 Aligned_cols=48 Identities=21% Similarity=0.472 Sum_probs=32.2
Q ss_pred ccccccccccccCC---Cceeec-CCCCcchHhhHHHHhh--CCCCccccccccC
Q psy12643 64 ESSCPICLKLFLVG---ESAKKL-DCKHTFHSTCILPWLE--KTSTCPLCRHEFK 112 (144)
Q Consensus 64 ~~~C~IC~~~~~~~---~~~~~~-~C~h~f~~~Ci~~~~~--~~~~CP~Cr~~~~ 112 (144)
...|.||-+..... +..+.. -|+--.|..|.. +-. .+..||-|+..+.
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYE-YEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYE-YERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhh-hhhhcCCccCCccCCchh
Confidence 45899999876322 222222 477778999983 332 6668999999775
No 177
>PF12773 DZR: Double zinc ribbon
Probab=29.06 E-value=45 Score=18.13 Aligned_cols=12 Identities=33% Similarity=0.703 Sum_probs=7.5
Q ss_pred CCCccccccccC
Q psy12643 101 TSTCPLCRHEFK 112 (144)
Q Consensus 101 ~~~CP~Cr~~~~ 112 (144)
...||.|...+.
T Consensus 29 ~~~C~~Cg~~~~ 40 (50)
T PF12773_consen 29 KKICPNCGAENP 40 (50)
T ss_pred CCCCcCCcCCCc
Confidence 345777777644
No 178
>KOG2857|consensus
Probab=28.60 E-value=29 Score=24.10 Aligned_cols=11 Identities=36% Similarity=0.827 Sum_probs=7.5
Q ss_pred ccccccccccc
Q psy12643 64 ESSCPICLKLF 74 (144)
Q Consensus 64 ~~~C~IC~~~~ 74 (144)
...|.||++..
T Consensus 5 t~tC~ic~e~~ 15 (157)
T KOG2857|consen 5 TTTCVICLESE 15 (157)
T ss_pred eeeehhhhcch
Confidence 35788888743
No 179
>PLN02436 cellulose synthase A
Probab=28.56 E-value=54 Score=30.19 Aligned_cols=49 Identities=22% Similarity=0.495 Sum_probs=32.5
Q ss_pred cccccccccccc---CCCceeec-CCCCcchHhhHHHHhh-CCCCccccccccC
Q psy12643 64 ESSCPICLKLFL---VGESAKKL-DCKHTFHSTCILPWLE-KTSTCPLCRHEFK 112 (144)
Q Consensus 64 ~~~C~IC~~~~~---~~~~~~~~-~C~h~f~~~Ci~~~~~-~~~~CP~Cr~~~~ 112 (144)
...|.||-+... .|+..+.. -|+--.|..|..--.+ .+..||-|++.+.
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 458999998763 22222222 3777789999842222 5668999999775
No 180
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=27.91 E-value=34 Score=17.65 Aligned_cols=13 Identities=23% Similarity=0.741 Sum_probs=8.0
Q ss_pred cccccccccccCC
Q psy12643 65 SSCPICLKLFLVG 77 (144)
Q Consensus 65 ~~C~IC~~~~~~~ 77 (144)
.+|+-|...|...
T Consensus 3 i~Cp~C~~~y~i~ 15 (36)
T PF13717_consen 3 ITCPNCQAKYEID 15 (36)
T ss_pred EECCCCCCEEeCC
Confidence 4577777766433
No 181
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=27.82 E-value=27 Score=23.23 Aligned_cols=18 Identities=22% Similarity=0.608 Sum_probs=13.6
Q ss_pred HhhCCCCccccccccCCC
Q psy12643 97 WLEKTSTCPLCRHEFKTD 114 (144)
Q Consensus 97 ~~~~~~~CP~Cr~~~~~~ 114 (144)
++.+...|..|++++.-+
T Consensus 81 mLGr~D~CM~C~~pLTLd 98 (114)
T PF11023_consen 81 MLGRVDACMHCKEPLTLD 98 (114)
T ss_pred hhchhhccCcCCCcCccC
Confidence 445666799999998754
No 182
>KOG4218|consensus
Probab=27.29 E-value=50 Score=26.54 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=14.6
Q ss_pred ccccccccccccCCCceeecCCC
Q psy12643 64 ESSCPICLKLFLVGESAKKLDCK 86 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~C~ 86 (144)
++-|++|-+.. .|-+-..+.|.
T Consensus 15 ~ElCPVCGDkV-SGYHYGLLTCE 36 (475)
T KOG4218|consen 15 GELCPVCGDKV-SGYHYGLLTCE 36 (475)
T ss_pred ccccccccCcc-ccceeeeeehh
Confidence 67899998876 33345556553
No 183
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=26.68 E-value=55 Score=21.35 Aligned_cols=34 Identities=21% Similarity=0.212 Sum_probs=24.9
Q ss_pred cccccccccccCCCceeecCCCCcchHhhHHHHhh
Q psy12643 65 SSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLE 99 (144)
Q Consensus 65 ~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~ 99 (144)
-.|.||-..+-.|+..+.++= -..|..|+..-..
T Consensus 3 WkC~iCg~~I~~gqlFTF~~k-G~VH~~C~~~~~~ 36 (101)
T PF09943_consen 3 WKCYICGKPIYEGQLFTFTKK-GPVHYECFREKAS 36 (101)
T ss_pred eEEEecCCeeeecceEEEecC-CcEeHHHHHHHHh
Confidence 479999998876666655555 4589999876544
No 184
>KOG3726|consensus
Probab=26.57 E-value=36 Score=29.61 Aligned_cols=42 Identities=17% Similarity=0.375 Sum_probs=28.4
Q ss_pred ccccccccccccCC-CceeecCCCCcchHhhHHHHhhCCCCccccc
Q psy12643 64 ESSCPICLKLFLVG-ESAKKLDCKHTFHSTCILPWLEKTSTCPLCR 108 (144)
Q Consensus 64 ~~~C~IC~~~~~~~-~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr 108 (144)
...|.+|+..-... .-...+.|+..||..| |+.-...|++|.
T Consensus 654 ~r~C~vcq~pedse~~v~rt~~C~~~~C~~c---~~~~~~~~~vC~ 696 (717)
T KOG3726|consen 654 IRTCKVCQLPEDSETDVCRTTFCYTPYCVAC---SLDYASISEVCG 696 (717)
T ss_pred HHHHHHhcCCcCccccccCccccCCcchHhh---hhhhhccCcccC
Confidence 56788998654311 2233457999999998 445566788884
No 185
>PRK00420 hypothetical protein; Validated
Probab=26.16 E-value=52 Score=21.86 Aligned_cols=16 Identities=13% Similarity=0.399 Sum_probs=10.2
Q ss_pred CCCCccccccccCCCC
Q psy12643 100 KTSTCPLCRHEFKTDD 115 (144)
Q Consensus 100 ~~~~CP~Cr~~~~~~~ 115 (144)
....||.|...+....
T Consensus 39 g~~~Cp~Cg~~~~v~~ 54 (112)
T PRK00420 39 GEVVCPVHGKVYIVKS 54 (112)
T ss_pred CceECCCCCCeeeecc
Confidence 3445899988665433
No 186
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=25.94 E-value=54 Score=28.86 Aligned_cols=51 Identities=20% Similarity=0.483 Sum_probs=33.4
Q ss_pred CCcccccccccccccCCCceee-------cCCCCcc--------------------hHhhHHHHhhC--------CCCcc
Q psy12643 61 HEPESSCPICLKLFLVGESAKK-------LDCKHTF--------------------HSTCILPWLEK--------TSTCP 105 (144)
Q Consensus 61 ~~~~~~C~IC~~~~~~~~~~~~-------~~C~h~f--------------------~~~Ci~~~~~~--------~~~CP 105 (144)
.-+-..|.-|++++-.+....- +.||..| |..|-.+|... ...||
T Consensus 98 ~pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp 177 (750)
T COG0068 98 PPDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACP 177 (750)
T ss_pred CCchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCc
Confidence 4456789999987744333222 3577666 88998887652 22599
Q ss_pred cccccc
Q psy12643 106 LCRHEF 111 (144)
Q Consensus 106 ~Cr~~~ 111 (144)
.|.-.+
T Consensus 178 ~CGP~~ 183 (750)
T COG0068 178 KCGPHL 183 (750)
T ss_pred ccCCCe
Confidence 997654
No 187
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=24.72 E-value=1.2e+02 Score=21.26 Aligned_cols=19 Identities=32% Similarity=0.471 Sum_probs=13.7
Q ss_pred HhhCCCCccccccccCCCC
Q psy12643 97 WLEKTSTCPLCRHEFKTDD 115 (144)
Q Consensus 97 ~~~~~~~CP~Cr~~~~~~~ 115 (144)
.+.....||.|...+-..+
T Consensus 124 A~~~~F~Cp~Cg~~L~~~d 142 (158)
T TIGR00373 124 AMELNFTCPRCGAMLDYLD 142 (158)
T ss_pred HHHcCCcCCCCCCEeeecc
Confidence 3345788999999875543
No 188
>KOG2113|consensus
Probab=24.63 E-value=61 Score=25.71 Aligned_cols=42 Identities=10% Similarity=-0.097 Sum_probs=28.8
Q ss_pred ccccccccccccCCCceeecCCCC-cchHhhHHHHhhCCCCccccccc
Q psy12643 64 ESSCPICLKLFLVGESAKKLDCKH-TFHSTCILPWLEKTSTCPLCRHE 110 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~C~h-~f~~~Ci~~~~~~~~~CP~Cr~~ 110 (144)
...|-.|-+.+ -..+..+|+| .||..|.. +.-..+||+|...
T Consensus 343 ~~~~~~~~~~~---~st~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~ 385 (394)
T KOG2113|consen 343 SLKGTSAGFGL---LSTIWSGGNMNLSPGSLAS--ASASPTSSTCDHN 385 (394)
T ss_pred hcccccccCce---eeeEeecCCcccChhhhhh--cccCCcccccccc
Confidence 55677776554 3334458998 67888865 5567789999754
No 189
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=24.53 E-value=62 Score=15.67 Aligned_cols=29 Identities=24% Similarity=0.461 Sum_probs=7.3
Q ss_pred ccccccccccCCCceeecCCCCcchHhhH
Q psy12643 66 SCPICLKLFLVGESAKKLDCKHTFHSTCI 94 (144)
Q Consensus 66 ~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci 94 (144)
.|.+|.+.......-.-..|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 46777666521011112246666666663
No 190
>PLN02248 cellulose synthase-like protein
Probab=23.38 E-value=78 Score=29.37 Aligned_cols=33 Identities=21% Similarity=0.650 Sum_probs=26.8
Q ss_pred CCCCcchHhhHHHHhhCCCCccccccccCCCCh
Q psy12643 84 DCKHTFHSTCILPWLEKTSTCPLCRHEFKTDDA 116 (144)
Q Consensus 84 ~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 116 (144)
.|+...|.+|....+.....||-|+.+....+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (1135)
T PLN02248 149 ECGFKICRDCYIDAVKSGGICPGCKEPYKVTDL 181 (1135)
T ss_pred cccchhHHhHhhhhhhcCCCCCCCccccccccc
Confidence 367889999998888888899999998855433
No 191
>PRK04023 DNA polymerase II large subunit; Validated
Probab=22.79 E-value=80 Score=29.07 Aligned_cols=61 Identities=16% Similarity=0.139 Sum_probs=37.2
Q ss_pred ccCCCcccccccccccccCCCceeecCCC-----CcchHhhHHHHhhCCCCccccccccCCCChhHHHHHH
Q psy12643 58 VTSHEPESSCPICLKLFLVGESAKKLDCK-----HTFHSTCILPWLEKTSTCPLCRHEFKTDDADYEAYKV 123 (144)
Q Consensus 58 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~-----h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~ 123 (144)
.........|+-|-... .....-.|| ..||..|- +......||.|..........--....
T Consensus 620 ~eVEVg~RfCpsCG~~t---~~frCP~CG~~Te~i~fCP~CG--~~~~~y~CPKCG~El~~~s~~~i~l~~ 685 (1121)
T PRK04023 620 IEVEIGRRKCPSCGKET---FYRRCPFCGTHTEPVYRCPRCG--IEVEEDECEKCGREPTPYSKRKIDLKE 685 (1121)
T ss_pred eeecccCccCCCCCCcC---CcccCCCCCCCCCcceeCcccc--CcCCCCcCCCCCCCCCccceEEecHHH
Confidence 33445577899997764 222222487 46899993 333446799999987665554333333
No 192
>PRK01343 zinc-binding protein; Provisional
Probab=22.78 E-value=52 Score=19.14 Aligned_cols=13 Identities=31% Similarity=0.667 Sum_probs=9.4
Q ss_pred CCCCccccccccC
Q psy12643 100 KTSTCPLCRHEFK 112 (144)
Q Consensus 100 ~~~~CP~Cr~~~~ 112 (144)
....||+|++++.
T Consensus 8 p~~~CP~C~k~~~ 20 (57)
T PRK01343 8 PTRPCPECGKPST 20 (57)
T ss_pred CCCcCCCCCCcCc
Confidence 3456999998764
No 193
>PF14445 Prok-RING_2: Prokaryotic RING finger family 2
Probab=22.64 E-value=8 Score=21.96 Aligned_cols=43 Identities=21% Similarity=0.431 Sum_probs=25.8
Q ss_pred ccccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCcccccc
Q psy12643 64 ESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRH 109 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~ 109 (144)
.+.|.+|...+....-....-||..-|.+|+ ...-..|..|..
T Consensus 7 ry~CDLCn~~~p~~~LRQCvlCGRWaC~sCW---~deYY~CksC~G 49 (57)
T PF14445_consen 7 RYSCDLCNSSHPISELRQCVLCGRWACNSCW---QDEYYTCKSCNG 49 (57)
T ss_pred hHhHHhhcccCcHHHHHHHhhhchhhhhhhh---hhhHhHHHhhhc
Confidence 5778888776632222222358998888884 334455666643
No 194
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.48 E-value=51 Score=21.14 Aligned_cols=12 Identities=25% Similarity=0.855 Sum_probs=10.7
Q ss_pred cchHhhHHHHhh
Q psy12643 88 TFHSTCILPWLE 99 (144)
Q Consensus 88 ~f~~~Ci~~~~~ 99 (144)
.||..|+..|..
T Consensus 42 gFCRNCLs~Wy~ 53 (104)
T COG3492 42 GFCRNCLSNWYR 53 (104)
T ss_pred HHHHHHHHHHHH
Confidence 399999999987
No 195
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.00 E-value=1.2e+02 Score=18.52 Aligned_cols=26 Identities=27% Similarity=0.526 Sum_probs=19.4
Q ss_pred CCcchHhhHHHHhhCCCCccccccccCC
Q psy12643 86 KHTFHSTCILPWLEKTSTCPLCRHEFKT 113 (144)
Q Consensus 86 ~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 113 (144)
.+.||..|.... -...||.|...+..
T Consensus 28 EcTFCadCae~~--l~g~CPnCGGelv~ 53 (84)
T COG3813 28 ECTFCADCAENR--LHGLCPNCGGELVA 53 (84)
T ss_pred eeehhHhHHHHh--hcCcCCCCCchhhc
Confidence 467999997653 45679999887654
No 196
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=20.97 E-value=40 Score=27.29 Aligned_cols=38 Identities=18% Similarity=0.406 Sum_probs=27.3
Q ss_pred hccccCCCcccccccccc-cccCCCceeecCCCCcchHhhHH
Q psy12643 55 LQEVTSHEPESSCPICLK-LFLVGESAKKLDCKHTFHSTCIL 95 (144)
Q Consensus 55 ~~~~~~~~~~~~C~IC~~-~~~~~~~~~~~~C~h~f~~~Ci~ 95 (144)
.+..........|.-|.. .. .....+|||..||..|+.
T Consensus 30 ~~s~~~~~gk~~C~RC~~~~~---~~~~~lp~~~~YCr~Cl~ 68 (441)
T COG4098 30 EPSIIIENGKYRCNRCGNTHI---ELFAKLPCGCLYCRNCLM 68 (441)
T ss_pred ccceecccCcEEehhcCCcch---hhhcccccceEeehhhhh
Confidence 444455556789999973 22 445678999999999984
No 197
>PF13834 DUF4193: Domain of unknown function (DUF4193)
Probab=20.89 E-value=41 Score=21.86 Aligned_cols=34 Identities=15% Similarity=0.415 Sum_probs=21.1
Q ss_pred ccccCCCcccccccccccccCCCceeec---CCCCcchHhh
Q psy12643 56 QEVTSHEPESSCPICLKLFLVGESAKKL---DCKHTFHSTC 93 (144)
Q Consensus 56 ~~~~~~~~~~~C~IC~~~~~~~~~~~~~---~C~h~f~~~C 93 (144)
..++...+.++|.-|...- +..++ .-|+.+|..|
T Consensus 62 ~ViP~q~DEFTCssCFLV~----HRSqLa~~~~g~~iC~DC 98 (99)
T PF13834_consen 62 RVIPKQADEFTCSSCFLVH----HRSQLAREKDGQPICRDC 98 (99)
T ss_pred EEecCCCCceeeeeeeeEe----chhhhccccCCCEecccc
Confidence 4555567789999997663 22222 2366677666
No 198
>PRK08351 DNA-directed RNA polymerase subunit E''; Validated
Probab=20.84 E-value=58 Score=19.18 Aligned_cols=17 Identities=24% Similarity=0.600 Sum_probs=11.0
Q ss_pred CCCCccccccccCCCCh
Q psy12643 100 KTSTCPLCRHEFKTDDA 116 (144)
Q Consensus 100 ~~~~CP~Cr~~~~~~~~ 116 (144)
....||.|...-...+|
T Consensus 14 ~~~~CP~Cgs~~~T~~W 30 (61)
T PRK08351 14 TEDRCPVCGSRDLSDEW 30 (61)
T ss_pred CCCcCCCCcCCcccccc
Confidence 44569999876644444
No 199
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=20.78 E-value=47 Score=15.83 Aligned_cols=9 Identities=44% Similarity=1.239 Sum_probs=7.1
Q ss_pred Ccccccccc
Q psy12643 103 TCPLCRHEF 111 (144)
Q Consensus 103 ~CP~Cr~~~ 111 (144)
.||+|.+.+
T Consensus 3 ~CPiC~~~v 11 (26)
T smart00734 3 QCPVCFREV 11 (26)
T ss_pred cCCCCcCcc
Confidence 589998776
No 200
>KOG2169|consensus
Probab=20.78 E-value=78 Score=27.43 Aligned_cols=57 Identities=21% Similarity=0.452 Sum_probs=30.2
Q ss_pred ccccccccccccCCCceeecCCCCcchHhhHHHHhh---C--CCCccccccccCCCChhHHHHHH
Q psy12643 64 ESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLE---K--TSTCPLCRHEFKTDDADYEAYKV 123 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~---~--~~~CP~Cr~~~~~~~~~~~~~~~ 123 (144)
...|+|+...+. -...-..|.|.-|.+-. .++. + .-.||+|.+....+......+--
T Consensus 306 SL~CPl~~~Rm~--~P~r~~~CkHlQcFD~~-~~lq~n~~~pTW~CPVC~~~~~~e~l~iD~~~~ 367 (636)
T KOG2169|consen 306 SLNCPLSKMRMS--LPARGHTCKHLQCFDAL-SYLQMNEQKPTWRCPVCQKAAPFEGLIIDGYFL 367 (636)
T ss_pred EecCCcccceee--cCCcccccccceecchh-hhHHhccCCCeeeCccCCccccccchhhhHHHH
Confidence 556777755441 11222345654444332 1222 1 12599999988877766554443
No 201
>PLN02400 cellulose synthase
Probab=20.47 E-value=74 Score=29.40 Aligned_cols=48 Identities=21% Similarity=0.525 Sum_probs=31.7
Q ss_pred ccccccccccccCC---Cceeec-CCCCcchHhhHHHHhh--CCCCccccccccC
Q psy12643 64 ESSCPICLKLFLVG---ESAKKL-DCKHTFHSTCILPWLE--KTSTCPLCRHEFK 112 (144)
Q Consensus 64 ~~~C~IC~~~~~~~---~~~~~~-~C~h~f~~~Ci~~~~~--~~~~CP~Cr~~~~ 112 (144)
...|.||-+..... +..+.. -|+--.|..|. ++-. .+..||-|+..+.
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCY-EYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCY-EYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchh-heecccCCccCcccCCccc
Confidence 45899999876322 222222 47777899997 3332 5667999998775
Done!