Query psy12643
Match_columns 144
No_of_seqs 126 out of 1762
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 15:52:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12643.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12643hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.6 5E-15 1.7E-19 94.4 6.9 76 38-113 8-89 (91)
2 1iym_A EL5; ring-H2 finger, ub 99.5 3.4E-14 1.2E-18 82.0 3.8 51 62-112 3-54 (55)
3 2kiz_A E3 ubiquitin-protein li 99.5 8.3E-14 2.8E-18 84.0 5.1 53 62-114 12-64 (69)
4 1v87_A Deltex protein 2; ring- 99.4 1.9E-13 6.6E-18 90.2 6.9 71 47-117 8-98 (114)
5 1x4j_A Ring finger protein 38; 99.4 5E-14 1.7E-18 86.4 3.8 53 62-114 21-73 (75)
6 2ep4_A Ring finger protein 24; 99.4 1.1E-13 3.7E-18 84.7 4.5 54 61-114 12-65 (74)
7 2ect_A Ring finger protein 126 99.4 1.1E-13 3.9E-18 85.4 4.5 55 62-116 13-67 (78)
8 3ng2_A RNF4, snurf, ring finge 99.4 1.9E-13 6.5E-18 82.7 3.2 55 61-115 7-65 (71)
9 2djb_A Polycomb group ring fin 99.4 4.3E-13 1.5E-17 81.6 4.7 53 61-116 12-65 (72)
10 2ecm_A Ring finger and CHY zin 99.4 4E-13 1.4E-17 77.4 3.9 51 62-112 3-54 (55)
11 4ayc_A E3 ubiquitin-protein li 99.4 1.2E-12 4E-17 89.4 6.5 49 64-115 53-101 (138)
12 2ea6_A Ring finger protein 4; 99.4 3.2E-13 1.1E-17 81.1 3.2 53 61-113 12-68 (69)
13 2d8t_A Dactylidin, ring finger 99.4 4E-13 1.4E-17 81.6 3.6 50 61-113 12-61 (71)
14 2ecy_A TNF receptor-associated 99.3 1E-12 3.5E-17 78.6 4.7 51 62-115 13-64 (66)
15 2xeu_A Ring finger protein 4; 99.3 4.1E-13 1.4E-17 79.5 2.8 53 63-115 2-58 (64)
16 2yur_A Retinoblastoma-binding 99.3 8.9E-13 3.1E-17 80.7 4.3 53 61-116 12-67 (74)
17 2ysl_A Tripartite motif-contai 99.3 1.5E-12 5.1E-17 79.2 5.2 52 61-115 17-71 (73)
18 2csy_A Zinc finger protein 183 99.3 1.4E-12 4.8E-17 81.0 4.5 48 62-112 13-60 (81)
19 3lrq_A E3 ubiquitin-protein li 99.3 8.1E-13 2.8E-17 85.5 3.5 50 64-116 22-73 (100)
20 1t1h_A Gspef-atpub14, armadill 99.3 1.8E-12 6.1E-17 79.9 4.9 52 62-116 6-58 (78)
21 2ecn_A Ring finger protein 141 99.3 5.1E-13 1.7E-17 80.7 1.5 51 61-115 12-62 (70)
22 1chc_A Equine herpes virus-1 r 99.3 1.7E-12 5.8E-17 77.9 3.4 50 62-113 3-52 (68)
23 2ct2_A Tripartite motif protei 99.3 3.3E-12 1.1E-16 80.2 4.9 54 61-114 12-69 (88)
24 2ecl_A Ring-box protein 2; RNF 99.3 1.2E-12 4.1E-17 81.6 2.8 53 62-114 13-77 (81)
25 2ckl_A Polycomb group ring fin 99.3 6.4E-12 2.2E-16 82.1 5.7 49 63-114 14-63 (108)
26 2y43_A E3 ubiquitin-protein li 99.3 6.3E-12 2.1E-16 80.9 5.6 49 64-115 22-71 (99)
27 3dpl_R Ring-box protein 1; ubi 99.3 4.4E-12 1.5E-16 83.0 4.9 52 62-113 35-101 (106)
28 3ztg_A E3 ubiquitin-protein li 99.3 9.7E-12 3.3E-16 78.9 5.9 48 62-112 11-61 (92)
29 2egp_A Tripartite motif-contai 99.3 1.6E-12 5.5E-17 80.1 2.2 50 62-114 10-66 (79)
30 2ecw_A Tripartite motif-contai 99.3 5.5E-12 1.9E-16 78.5 4.5 51 62-115 17-73 (85)
31 3fl2_A E3 ubiquitin-protein li 99.2 5.7E-12 1.9E-16 84.4 4.8 47 64-113 52-99 (124)
32 2kr4_A Ubiquitin conjugation f 99.2 8.8E-12 3E-16 78.4 5.4 54 63-119 13-66 (85)
33 2ecv_A Tripartite motif-contai 99.2 6.6E-12 2.2E-16 78.2 4.1 51 62-115 17-73 (85)
34 2ysj_A Tripartite motif-contai 99.2 1.2E-11 4.1E-16 73.1 4.6 44 61-107 17-63 (63)
35 1wgm_A Ubiquitin conjugation f 99.2 1.2E-11 4E-16 79.8 3.8 54 63-119 21-75 (98)
36 2kre_A Ubiquitin conjugation f 99.2 3.1E-11 1.1E-15 78.1 5.3 55 62-119 27-81 (100)
37 4ap4_A E3 ubiquitin ligase RNF 99.2 1.3E-11 4.3E-16 82.9 3.5 55 62-116 5-63 (133)
38 1g25_A CDK-activating kinase a 99.2 1.6E-11 5.6E-16 73.0 3.6 53 63-115 2-57 (65)
39 1jm7_A BRCA1, breast cancer ty 99.2 1.9E-11 6.4E-16 80.1 4.2 50 64-116 21-73 (112)
40 2ecj_A Tripartite motif-contai 99.2 2.4E-11 8.2E-16 70.5 4.0 43 62-107 13-58 (58)
41 1z6u_A NP95-like ring finger p 99.2 2.2E-11 7.5E-16 84.3 4.4 48 64-114 78-126 (150)
42 3hct_A TNF receptor-associated 99.2 1.5E-11 5.3E-16 81.6 3.4 52 61-115 15-67 (118)
43 3l11_A E3 ubiquitin-protein li 99.2 8E-12 2.7E-16 82.5 2.0 49 62-113 13-62 (115)
44 2d8s_A Cellular modulator of i 99.1 3.9E-11 1.3E-15 74.6 3.9 54 61-115 12-72 (80)
45 2ckl_B Ubiquitin ligase protei 99.1 3.7E-11 1.3E-15 84.1 3.9 49 63-114 53-103 (165)
46 1rmd_A RAG1; V(D)J recombinati 99.1 3.2E-11 1.1E-15 79.7 3.2 50 64-116 23-73 (116)
47 4a0k_B E3 ubiquitin-protein li 99.1 9.8E-12 3.4E-16 82.6 0.5 52 62-113 46-112 (117)
48 3knv_A TNF receptor-associated 99.1 2.5E-11 8.6E-16 83.2 2.4 50 61-113 28-78 (141)
49 1jm7_B BARD1, BRCA1-associated 99.1 1.3E-10 4.4E-15 77.0 4.7 48 64-116 22-70 (117)
50 4ap4_A E3 ubiquitin ligase RNF 99.0 4.2E-11 1.5E-15 80.3 1.8 57 59-115 67-127 (133)
51 1e4u_A Transcriptional repress 99.0 1.8E-10 6.1E-15 71.2 4.4 55 61-116 8-65 (78)
52 4ic3_A E3 ubiquitin-protein li 99.0 1.2E-10 3.9E-15 71.3 2.9 44 64-114 24-68 (74)
53 1bor_A Transcription factor PM 99.0 7.1E-11 2.4E-15 68.4 1.6 48 62-115 4-51 (56)
54 2ct0_A Non-SMC element 1 homol 99.0 3.6E-10 1.2E-14 69.1 4.1 52 62-115 13-66 (74)
55 2vje_A E3 ubiquitin-protein li 99.0 2E-10 6.9E-15 68.3 2.8 49 62-113 6-57 (64)
56 2y1n_A E3 ubiquitin-protein li 99.0 3.8E-10 1.3E-14 88.5 4.7 48 64-114 332-380 (389)
57 2c2l_A CHIP, carboxy terminus 98.9 4.1E-10 1.4E-14 84.2 3.9 52 63-117 207-259 (281)
58 3hcs_A TNF receptor-associated 98.9 4.1E-10 1.4E-14 79.1 3.5 52 61-115 15-67 (170)
59 2yu4_A E3 SUMO-protein ligase 98.9 6E-10 2E-14 71.1 3.7 53 62-117 5-67 (94)
60 2vje_B MDM4 protein; proto-onc 98.9 5E-10 1.7E-14 66.3 2.7 48 63-113 6-56 (63)
61 2ecg_A Baculoviral IAP repeat- 98.9 1.5E-09 5.3E-14 66.3 4.6 45 64-115 25-70 (75)
62 2f42_A STIP1 homology and U-bo 98.9 4.1E-09 1.4E-13 74.7 6.5 54 62-118 104-158 (179)
63 3htk_C E3 SUMO-protein ligase 98.8 4.4E-09 1.5E-13 78.3 5.3 54 61-117 178-236 (267)
64 2ea5_A Cell growth regulator w 98.7 1.1E-08 3.9E-13 61.4 3.3 47 61-114 12-59 (68)
65 2yho_A E3 ubiquitin-protein li 98.7 6.8E-09 2.3E-13 64.1 2.2 44 64-114 18-62 (79)
66 3t6p_A Baculoviral IAP repeat- 98.6 3.8E-08 1.3E-12 76.4 4.2 44 64-114 295-339 (345)
67 1vyx_A ORF K3, K3RING; zinc-bi 98.6 6.9E-08 2.4E-12 56.5 4.2 49 62-113 4-59 (60)
68 1wim_A KIAA0161 protein; ring 98.5 4.3E-08 1.5E-12 62.3 3.0 49 62-110 3-61 (94)
69 2bay_A PRE-mRNA splicing facto 98.5 2.8E-08 9.7E-13 58.4 1.9 50 64-116 3-53 (61)
70 3k1l_B Fancl; UBC, ring, RWD, 98.5 2E-08 6.9E-13 77.4 1.3 53 62-114 306-374 (381)
71 3vk6_A E3 ubiquitin-protein li 98.1 2.9E-06 1E-10 54.1 3.7 46 66-113 3-49 (101)
72 3nw0_A Non-structural maintena 97.7 2.9E-05 9.8E-10 57.3 3.5 51 63-115 179-231 (238)
73 2ko5_A Ring finger protein Z; 95.7 0.0059 2E-07 38.3 2.3 47 64-115 28-75 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 94.5 0.02 7E-07 35.9 2.3 32 64-97 3-36 (101)
75 3m62_A Ubiquitin conjugation f 92.1 0.25 8.6E-06 42.9 5.9 53 64-119 891-944 (968)
76 2lri_C Autoimmune regulator; Z 90.8 0.17 5.8E-06 29.5 2.5 45 62-110 10-59 (66)
77 3lqh_A Histone-lysine N-methyl 87.7 0.44 1.5E-05 33.4 3.3 50 64-113 2-66 (183)
78 1we9_A PHD finger family prote 87.7 0.12 4E-06 29.8 0.2 49 62-110 4-58 (64)
79 1wil_A KIAA1045 protein; ring 86.9 0.63 2.2E-05 28.5 3.2 34 63-97 14-47 (89)
80 2cs3_A Protein C14ORF4, MY039 86.1 1.8 6.2E-05 26.2 4.9 37 62-99 13-51 (93)
81 2lv9_A Histone-lysine N-methyl 85.9 0.49 1.7E-05 29.6 2.5 45 64-110 28-76 (98)
82 1f62_A Transcription factor WS 83.0 0.75 2.5E-05 24.9 2.1 43 66-109 2-49 (51)
83 2l5u_A Chromodomain-helicase-D 81.3 0.83 2.8E-05 25.9 1.9 44 62-109 9-57 (61)
84 2k16_A Transcription initiatio 80.8 0.57 2E-05 27.6 1.1 48 64-112 18-70 (75)
85 2kgg_A Histone demethylase jar 79.6 2.1 7.2E-05 23.3 3.2 43 66-108 4-52 (52)
86 1wep_A PHF8; structural genomi 76.5 2.5 8.6E-05 25.1 3.1 48 64-112 12-65 (79)
87 1mm2_A MI2-beta; PHD, zinc fin 74.9 0.91 3.1E-05 25.7 0.8 46 62-111 7-57 (61)
88 4fo9_A E3 SUMO-protein ligase 74.2 2.6 8.9E-05 32.6 3.4 57 64-123 215-276 (360)
89 3o36_A Transcription intermedi 73.6 0.86 3E-05 31.6 0.5 46 63-111 3-52 (184)
90 1z60_A TFIIH basal transcripti 73.5 1.9 6.4E-05 24.5 1.9 43 65-107 16-58 (59)
91 2vpb_A Hpygo1, pygopus homolog 73.0 3 0.0001 24.0 2.7 33 62-94 6-40 (65)
92 2l43_A N-teminal domain from h 71.3 1.1 3.9E-05 27.4 0.7 53 61-113 22-78 (88)
93 2a20_A Regulating synaptic mem 71.0 0.28 9.5E-06 27.9 -2.0 36 62-97 7-43 (62)
94 2yt5_A Metal-response element- 70.5 2 6.9E-05 24.4 1.6 50 62-111 4-62 (66)
95 3u5n_A E3 ubiquitin-protein li 69.8 0.94 3.2E-05 32.1 0.0 45 63-111 6-55 (207)
96 3i2d_A E3 SUMO-protein ligase 69.1 4.9 0.00017 31.2 3.9 57 64-123 249-310 (371)
97 2yql_A PHD finger protein 21A; 67.5 0.59 2E-05 26.0 -1.2 44 62-108 7-54 (56)
98 1xwh_A Autoimmune regulator; P 66.9 0.73 2.5E-05 26.6 -0.9 46 62-110 6-55 (66)
99 2ri7_A Nucleosome-remodeling f 66.9 1.5 5.1E-05 30.0 0.6 48 62-110 6-59 (174)
100 1y02_A CARP2, FYVE-ring finger 66.7 0.65 2.2E-05 30.3 -1.2 47 64-110 19-66 (120)
101 2d8v_A Zinc finger FYVE domain 66.1 4.6 0.00016 23.4 2.4 33 61-97 5-38 (67)
102 1fp0_A KAP-1 corepressor; PHD 65.1 3.7 0.00013 25.2 2.0 46 62-110 23-72 (88)
103 2ysm_A Myeloid/lymphoid or mix 64.7 2.5 8.5E-05 26.7 1.3 38 62-99 5-42 (111)
104 2ku3_A Bromodomain-containing 63.9 6.5 0.00022 22.9 2.9 49 61-109 13-65 (71)
105 2puy_A PHD finger protein 21A; 63.7 0.92 3.2E-05 25.5 -0.9 44 63-109 4-51 (60)
106 1z2q_A LM5-1; membrane protein 62.9 6.2 0.00021 23.6 2.8 35 62-96 19-54 (84)
107 1joc_A EEA1, early endosomal a 62.1 5 0.00017 26.1 2.4 32 64-95 69-101 (125)
108 2xb1_A Pygopus homolog 2, B-ce 61.5 4.6 0.00016 25.5 2.1 49 64-112 3-63 (105)
109 1weo_A Cellulose synthase, cat 60.2 25 0.00085 21.6 5.1 51 63-113 15-70 (93)
110 1vfy_A Phosphatidylinositol-3- 60.1 6.1 0.00021 23.0 2.3 32 64-95 11-43 (73)
111 2yw8_A RUN and FYVE domain-con 59.8 6.3 0.00022 23.5 2.4 34 63-96 18-52 (82)
112 2e6r_A Jumonji/ARID domain-con 59.8 0.77 2.6E-05 28.4 -1.8 46 63-109 15-65 (92)
113 1zbd_B Rabphilin-3A; G protein 59.7 7.9 0.00027 25.5 3.0 34 62-95 53-88 (134)
114 3v43_A Histone acetyltransfera 59.3 3.1 0.00011 26.4 1.0 44 66-109 63-111 (112)
115 2ro1_A Transcription intermedi 59.1 2.3 7.9E-05 29.7 0.4 44 64-110 2-49 (189)
116 1wfk_A Zinc finger, FYVE domai 57.7 7.5 0.00026 23.6 2.5 34 62-95 7-41 (88)
117 1wen_A Inhibitor of growth fam 57.3 9.1 0.00031 22.2 2.8 43 64-112 16-67 (71)
118 1x4u_A Zinc finger, FYVE domai 56.4 8 0.00027 23.1 2.5 33 63-95 13-46 (84)
119 1weu_A Inhibitor of growth fam 56.3 7.9 0.00027 23.8 2.4 45 64-112 36-87 (91)
120 2zet_C Melanophilin; complex, 55.9 6.3 0.00022 26.6 2.1 46 63-109 67-116 (153)
121 3t7l_A Zinc finger FYVE domain 55.8 9 0.00031 23.3 2.7 33 64-96 20-53 (90)
122 1dvp_A HRS, hepatocyte growth 55.5 5.8 0.0002 28.1 2.0 32 64-95 161-193 (220)
123 1wee_A PHD finger family prote 55.2 1.9 6.6E-05 25.1 -0.5 48 63-111 15-67 (72)
124 2lbm_A Transcriptional regulat 54.4 17 0.00057 24.3 4.0 45 61-109 60-116 (142)
125 3o70_A PHD finger protein 13; 53.6 2.8 9.7E-05 24.3 0.1 46 62-109 17-66 (68)
126 3zyq_A Hepatocyte growth facto 53.1 6.6 0.00022 28.1 1.9 32 64-95 164-196 (226)
127 3mjh_B Early endosome antigen 52.9 4 0.00014 20.4 0.5 11 64-74 5-15 (34)
128 3shb_A E3 ubiquitin-protein li 50.9 2.5 8.6E-05 25.2 -0.5 42 66-109 28-76 (77)
129 1wev_A Riken cDNA 1110020M19; 50.6 6 0.0002 24.0 1.2 48 64-111 16-73 (88)
130 1wew_A DNA-binding family prot 50.0 6.3 0.00021 23.3 1.2 47 63-111 15-73 (78)
131 1m3v_A FLIN4, fusion of the LI 47.3 13 0.00044 23.6 2.5 53 63-115 31-83 (122)
132 2dar_A PDZ and LIM domain prot 47.0 2.8 9.7E-05 25.2 -0.7 40 63-113 24-63 (90)
133 1x62_A C-terminal LIM domain p 45.9 9.9 0.00034 22.0 1.7 39 63-112 14-52 (79)
134 2e6s_A E3 ubiquitin-protein li 44.9 5 0.00017 23.8 0.2 44 65-109 27-76 (77)
135 2xjy_A Rhombotin-2; oncoprotei 43.5 17 0.0006 23.0 2.7 52 62-113 27-78 (131)
136 3mpx_A FYVE, rhogef and PH dom 43.4 5 0.00017 31.1 0.0 48 63-110 374-429 (434)
137 1nyp_A Pinch protein; LIM doma 42.7 10 0.00036 20.9 1.4 39 64-113 5-43 (66)
138 2vnf_A ING 4, P29ING4, inhibit 42.6 6.6 0.00023 22.0 0.5 40 64-109 10-58 (60)
139 3asl_A E3 ubiquitin-protein li 42.4 5.4 0.00019 23.1 0.1 43 66-109 20-68 (70)
140 1wyh_A SLIM 2, skeletal muscle 42.3 12 0.00041 21.0 1.6 41 64-113 5-45 (72)
141 3ask_A E3 ubiquitin-protein li 42.1 6.5 0.00022 28.4 0.4 45 64-109 174-224 (226)
142 3c6w_A P28ING5, inhibitor of g 42.0 7.2 0.00025 21.8 0.5 40 64-109 9-57 (59)
143 2d8z_A Four and A half LIM dom 41.0 12 0.00041 20.9 1.5 37 65-112 6-42 (70)
144 2gmg_A Hypothetical protein PF 40.6 6.2 0.00021 25.0 0.1 29 79-112 67-95 (105)
145 2cor_A Pinch protein; LIM doma 40.1 18 0.00062 20.9 2.2 40 64-114 15-54 (79)
146 2kwj_A Zinc finger protein DPF 38.5 1.9 6.5E-05 27.6 -2.6 44 66-109 60-107 (114)
147 1x64_A Alpha-actinin-2 associa 38.4 13 0.00043 22.1 1.3 40 64-114 25-64 (89)
148 1wem_A Death associated transc 37.8 34 0.0012 19.7 3.2 46 64-111 16-71 (76)
149 4gne_A Histone-lysine N-methyl 37.6 33 0.0011 21.6 3.2 45 61-111 12-63 (107)
150 2d8x_A Protein pinch; LIM doma 37.5 8.8 0.0003 21.5 0.5 40 64-114 5-44 (70)
151 1wig_A KIAA1808 protein; LIM d 36.7 13 0.00045 21.2 1.1 9 66-74 7-15 (73)
152 1x4l_A Skeletal muscle LIM-pro 35.9 15 0.00052 20.6 1.3 41 64-112 5-46 (72)
153 3ql9_A Transcriptional regulat 35.7 40 0.0014 22.0 3.5 44 62-109 55-110 (129)
154 2jvx_A NF-kappa-B essential mo 35.0 12 0.00042 17.7 0.6 12 102-113 4-15 (28)
155 3fyb_A Protein of unknown func 35.0 15 0.0005 23.0 1.2 11 89-99 42-52 (104)
156 2o35_A Hypothetical protein DU 34.6 15 0.00052 23.0 1.2 11 89-99 43-53 (105)
157 1x63_A Skeletal muscle LIM-pro 33.9 19 0.00065 20.7 1.6 42 64-114 15-56 (82)
158 2xqn_T Testin, TESS; metal-bin 32.6 51 0.0017 20.6 3.6 50 61-114 27-76 (126)
159 1v6g_A Actin binding LIM prote 32.5 13 0.00044 21.5 0.6 38 65-113 16-53 (81)
160 3o7a_A PHD finger protein 13 v 32.1 7.4 0.00025 21.0 -0.5 40 69-109 8-51 (52)
161 1x6a_A LIMK-2, LIM domain kina 32.0 17 0.00058 20.9 1.1 37 65-112 16-52 (81)
162 1x68_A FHL5 protein; four-and- 31.5 15 0.00052 20.9 0.8 40 65-112 6-46 (76)
163 2cu8_A Cysteine-rich protein 2 31.4 12 0.00042 21.3 0.4 40 64-113 9-48 (76)
164 3a1b_A DNA (cytosine-5)-methyl 31.4 43 0.0015 22.7 3.2 35 62-100 77-114 (159)
165 2cur_A Skeletal muscle LIM-pro 30.6 13 0.00044 20.7 0.4 10 65-74 6-15 (69)
166 1wd2_A Ariadne-1 protein homol 30.3 9.1 0.00031 21.5 -0.3 36 64-99 6-46 (60)
167 2cuq_A Four and A half LIM dom 30.1 20 0.00067 20.6 1.2 37 65-112 16-52 (80)
168 2pv0_B DNA (cytosine-5)-methyl 30.0 41 0.0014 26.2 3.2 35 62-99 91-127 (386)
169 2lq6_A Bromodomain-containing 30.0 33 0.0011 20.6 2.2 40 57-97 10-51 (87)
170 2co8_A NEDD9 interacting prote 29.8 28 0.00097 20.2 1.9 42 63-114 14-55 (82)
171 2fiy_A Protein FDHE homolog; F 29.4 6.5 0.00022 29.7 -1.4 47 62-110 180-231 (309)
172 1iml_A CRIP, cysteine rich int 29.0 14 0.00048 21.0 0.4 46 62-111 25-71 (76)
173 1rut_X Flinc4, fusion protein 27.9 23 0.0008 24.1 1.4 51 62-113 30-81 (188)
174 2ehe_A Four and A half LIM dom 27.1 28 0.00095 20.0 1.5 40 65-113 16-55 (82)
175 1x4k_A Skeletal muscle LIM-pro 27.1 19 0.00063 20.1 0.7 41 65-114 6-46 (72)
176 1l8d_A DNA double-strand break 26.6 32 0.0011 21.3 1.8 13 101-113 47-59 (112)
177 2dlo_A Thyroid receptor-intera 26.5 16 0.00055 21.1 0.3 37 65-112 16-52 (81)
178 1x3h_A Leupaxin; paxillin fami 25.8 18 0.00061 20.7 0.4 38 65-113 16-53 (80)
179 1zfo_A LAsp-1; LIM domain, zin 23.4 46 0.0016 15.6 1.6 27 65-93 4-30 (31)
180 1a7i_A QCRP2 (LIM1); LIM domai 23.3 16 0.00053 21.1 -0.2 10 65-74 8-17 (81)
181 2egq_A FHL1 protein; LIM domai 22.7 22 0.00075 20.2 0.4 42 64-113 15-58 (77)
182 2rgt_A Fusion of LIM/homeobox 22.3 83 0.0028 20.8 3.4 32 62-96 31-62 (169)
183 2dj7_A Actin-binding LIM prote 22.3 43 0.0015 19.3 1.7 39 64-112 15-53 (80)
184 2jmo_A Parkin; IBR, E3 ligase, 21.8 6.7 0.00023 23.3 -2.1 14 84-97 55-68 (80)
185 2jrp_A Putative cytoplasmic pr 21.3 5.6 0.00019 24.0 -2.5 10 65-74 3-12 (81)
186 2d8y_A Eplin protein; LIM doma 20.7 43 0.0015 19.7 1.5 11 64-74 15-25 (91)
187 2l3k_A Rhombotin-2, linker, LI 20.3 61 0.0021 20.3 2.2 33 64-97 36-68 (123)
188 3f6q_B LIM and senescent cell 20.1 29 0.00099 19.1 0.5 42 64-114 11-52 (72)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.57 E-value=5e-15 Score=94.42 Aligned_cols=76 Identities=39% Similarity=0.826 Sum_probs=63.0
Q ss_pred CCCCCCCCCCcHHHHHhhccccCCC------cccccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCcccccccc
Q psy12643 38 EFNDELPPPASKAFVKSLQEVTSHE------PESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEF 111 (144)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~ 111 (144)
........+.++..+..++...... ++..|+||++.+..+.....++|+|.||..||..|+.....||+||+.+
T Consensus 8 ~~~~~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~ 87 (91)
T 2l0b_A 8 HSHMVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMF 87 (91)
T ss_dssp SCCSSCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBS
T ss_pred CCCCcCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccC
Confidence 3445667788889998888655432 3677999999997777788899999999999999999999999999988
Q ss_pred CC
Q psy12643 112 KT 113 (144)
Q Consensus 112 ~~ 113 (144)
..
T Consensus 88 ~~ 89 (91)
T 2l0b_A 88 PP 89 (91)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 2
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.46 E-value=3.4e-14 Score=82.02 Aligned_cols=51 Identities=41% Similarity=0.879 Sum_probs=45.1
Q ss_pred CcccccccccccccCCCceeecC-CCCcchHhhHHHHhhCCCCccccccccC
Q psy12643 62 EPESSCPICLKLFLVGESAKKLD-CKHTFHSTCILPWLEKTSTCPLCRHEFK 112 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~~-C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~ 112 (144)
+++..|+||++.+..+.....++ |+|.||..|+.+|+..+..||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 34788999999997766677887 9999999999999999999999998774
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.45 E-value=8.3e-14 Score=84.04 Aligned_cols=53 Identities=36% Similarity=0.972 Sum_probs=46.6
Q ss_pred CcccccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccCCC
Q psy12643 62 EPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTD 114 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 114 (144)
.....|+||++.+..+..++.++|+|.||..||..|+.....||+||+.+...
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 44788999999997667778899999999999999999888999999988653
No 4
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.45 E-value=1.9e-13 Score=90.18 Aligned_cols=71 Identities=23% Similarity=0.600 Sum_probs=51.8
Q ss_pred CcHHHHHhhccccCCCcccccccccccccCCC---------------ceeecCCCCcchHhhHHHHh-----hCCCCccc
Q psy12643 47 ASKAFVKSLQEVTSHEPESSCPICLKLFLVGE---------------SAKKLDCKHTFHSTCILPWL-----EKTSTCPL 106 (144)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~---------------~~~~~~C~h~f~~~Ci~~~~-----~~~~~CP~ 106 (144)
.+...+...........+..|+||++.|..+. ....++|+|.||..||..|+ .....||+
T Consensus 8 ~p~~~i~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~ 87 (114)
T 1v87_A 8 EPEQVIRKYTEELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPS 87 (114)
T ss_dssp CHHHHHHHHEEECSSCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTT
T ss_pred ChHHHHHHHHHhccCCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCC
Confidence 34455665555555555779999999985432 22267899999999999999 45678999
Q ss_pred cccccCCCChh
Q psy12643 107 CRHEFKTDDAD 117 (144)
Q Consensus 107 Cr~~~~~~~~~ 117 (144)
||+.+......
T Consensus 88 CR~~~~~~~g~ 98 (114)
T 1v87_A 88 CKTIYGEKTGT 98 (114)
T ss_dssp TCCBSSSCSSS
T ss_pred CCCccCCCCCC
Confidence 99998765443
No 5
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=5e-14 Score=86.45 Aligned_cols=53 Identities=30% Similarity=0.798 Sum_probs=46.8
Q ss_pred CcccccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccCCC
Q psy12643 62 EPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTD 114 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 114 (144)
.+...|+||++.+..+.....++|+|.||..||..|+.....||+||+.+...
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 45788999999997666678889999999999999999889999999988764
No 6
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1.1e-13 Score=84.66 Aligned_cols=54 Identities=31% Similarity=0.735 Sum_probs=46.6
Q ss_pred CCcccccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccCCC
Q psy12643 61 HEPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTD 114 (144)
Q Consensus 61 ~~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 114 (144)
......|+||++.+..+.....++|+|.||..||..|+.....||+||+.+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 344788999999997666667779999999999999999888999999988653
No 7
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.43 E-value=1.1e-13 Score=85.37 Aligned_cols=55 Identities=38% Similarity=1.065 Sum_probs=47.4
Q ss_pred CcccccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccCCCCh
Q psy12643 62 EPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTDDA 116 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 116 (144)
.....|+||++.+..+.....++|+|.||..||..|+.....||+||+.+.....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT 67 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCS
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCccc
Confidence 3478999999999766666778999999999999999988999999999876543
No 8
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.38 E-value=1.9e-13 Score=82.71 Aligned_cols=55 Identities=29% Similarity=0.642 Sum_probs=45.3
Q ss_pred CCcccccccccccccCC----CceeecCCCCcchHhhHHHHhhCCCCccccccccCCCC
Q psy12643 61 HEPESSCPICLKLFLVG----ESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTDD 115 (144)
Q Consensus 61 ~~~~~~C~IC~~~~~~~----~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 115 (144)
..+...|+||++.+... ...+.++|||.||..||..|+.....||+||+.+....
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhh
Confidence 34578999999998431 23377899999999999999998899999999987654
No 9
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=4.3e-13 Score=81.62 Aligned_cols=53 Identities=26% Similarity=0.616 Sum_probs=45.3
Q ss_pred CCcccccccccccccCCCceeec-CCCCcchHhhHHHHhhCCCCccccccccCCCCh
Q psy12643 61 HEPESSCPICLKLFLVGESAKKL-DCKHTFHSTCILPWLEKTSTCPLCRHEFKTDDA 116 (144)
Q Consensus 61 ~~~~~~C~IC~~~~~~~~~~~~~-~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 116 (144)
..+...|+||++.+ ..++.+ +|||.||..||..|+.....||+||+.+...+.
T Consensus 12 ~~~~~~C~IC~~~~---~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 65 (72)
T 2djb_A 12 LTPYILCSICKGYL---IDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQP 65 (72)
T ss_dssp CCGGGSCTTTSSCC---SSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCS
T ss_pred cCCCCCCCCCChHH---HCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcccc
Confidence 45588999999998 556665 899999999999999988999999999876543
No 10
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.37 E-value=4e-13 Score=77.36 Aligned_cols=51 Identities=35% Similarity=0.675 Sum_probs=43.1
Q ss_pred CcccccccccccccCC-CceeecCCCCcchHhhHHHHhhCCCCccccccccC
Q psy12643 62 EPESSCPICLKLFLVG-ESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFK 112 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~-~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~ 112 (144)
.+...|+||++.+..+ ..++.++|+|.||..|+..|+.....||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 3478899999998433 34677899999999999999998899999999875
No 11
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.36 E-value=1.2e-12 Score=89.40 Aligned_cols=49 Identities=39% Similarity=0.952 Sum_probs=44.5
Q ss_pred ccccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccCCCC
Q psy12643 64 ESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTDD 115 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 115 (144)
+..|+||++.+ ..++.++|||.||..||..|+.....||+||+++....
T Consensus 53 ~~~C~iC~~~~---~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 53 ELQCIICSEYF---IEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKT 101 (138)
T ss_dssp HSBCTTTCSBC---SSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred cCCCcccCccc---CCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence 67899999999 77888999999999999999999999999999987653
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=3.2e-13 Score=81.14 Aligned_cols=53 Identities=30% Similarity=0.665 Sum_probs=43.8
Q ss_pred CCcccccccccccccCC----CceeecCCCCcchHhhHHHHhhCCCCccccccccCC
Q psy12643 61 HEPESSCPICLKLFLVG----ESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKT 113 (144)
Q Consensus 61 ~~~~~~C~IC~~~~~~~----~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 113 (144)
..+...|+||++.+... ..++.++|||.||..||..|+.....||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 34578899999998432 223778999999999999999988899999998864
No 13
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=4e-13 Score=81.55 Aligned_cols=50 Identities=30% Similarity=0.563 Sum_probs=44.5
Q ss_pred CCcccccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccCC
Q psy12643 61 HEPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKT 113 (144)
Q Consensus 61 ~~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 113 (144)
..+...|+||++.+ ..++.++|+|.||..||..|+.....||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~---~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTC---VHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBC---SSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCCccCCccc---CCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 34578899999998 777888999999999999999988999999998864
No 14
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1e-12 Score=78.60 Aligned_cols=51 Identities=25% Similarity=0.647 Sum_probs=43.9
Q ss_pred CcccccccccccccCCCceeecCCCCcchHhhHHHHhh-CCCCccccccccCCCC
Q psy12643 62 EPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLE-KTSTCPLCRHEFKTDD 115 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~-~~~~CP~Cr~~~~~~~ 115 (144)
.+...|+||++.+ ..++.++|||.||..||..|+. ....||+||+.+..++
T Consensus 13 ~~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 13 EDKYKCEKCHLVL---CSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCCEECTTTCCEE---SSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred CcCCCCCCCChHh---cCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 4478999999999 6677789999999999999995 5678999999987653
No 15
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.34 E-value=4.1e-13 Score=79.51 Aligned_cols=53 Identities=30% Similarity=0.672 Sum_probs=44.1
Q ss_pred cccccccccccccCC----CceeecCCCCcchHhhHHHHhhCCCCccccccccCCCC
Q psy12643 63 PESSCPICLKLFLVG----ESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTDD 115 (144)
Q Consensus 63 ~~~~C~IC~~~~~~~----~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 115 (144)
+...|+||++.+... ..++.++|||.||..|+..|+..+..||+||+.+...+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence 467899999998431 23377899999999999999998899999999987654
No 16
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.33 E-value=8.9e-13 Score=80.70 Aligned_cols=53 Identities=28% Similarity=0.579 Sum_probs=44.5
Q ss_pred CCcccccccccccccCCCceeecC-CCCcchHhhHHHHhhCC--CCccccccccCCCCh
Q psy12643 61 HEPESSCPICLKLFLVGESAKKLD-CKHTFHSTCILPWLEKT--STCPLCRHEFKTDDA 116 (144)
Q Consensus 61 ~~~~~~C~IC~~~~~~~~~~~~~~-C~h~f~~~Ci~~~~~~~--~~CP~Cr~~~~~~~~ 116 (144)
..+...|+||++.+ ..++.++ |||.||..||..|+... ..||+||+.+...+.
T Consensus 12 ~~~~~~C~IC~~~~---~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2yur_A 12 IPDELLCLICKDIM---TDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDA 67 (74)
T ss_dssp SCGGGSCSSSCCCC---TTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTT
T ss_pred CCCCCCCcCCChHH---hCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccc
Confidence 34578999999999 7788899 99999999999999854 689999998665443
No 17
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.5e-12 Score=79.18 Aligned_cols=52 Identities=33% Similarity=0.769 Sum_probs=44.5
Q ss_pred CCcccccccccccccCCCceeecCCCCcchHhhHHHHhh---CCCCccccccccCCCC
Q psy12643 61 HEPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLE---KTSTCPLCRHEFKTDD 115 (144)
Q Consensus 61 ~~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~---~~~~CP~Cr~~~~~~~ 115 (144)
..+...|+||++.+ ..++.++|||.||..|+..|+. ....||+||+.+...+
T Consensus 17 ~~~~~~C~IC~~~~---~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 17 LQEEVICPICLDIL---QKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCBCTTTCSBC---SSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred CccCCEeccCCccc---CCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 34578999999998 6788889999999999999997 4558999999987654
No 18
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.4e-12 Score=81.04 Aligned_cols=48 Identities=27% Similarity=0.612 Sum_probs=43.5
Q ss_pred CcccccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccC
Q psy12643 62 EPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFK 112 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~ 112 (144)
.....|+||++.+ ..++.++|||.||..||..|+.....||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAF---QNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBC---CSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchh---cCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 3477899999999 67788999999999999999998889999999986
No 19
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.32 E-value=8.1e-13 Score=85.48 Aligned_cols=50 Identities=26% Similarity=0.667 Sum_probs=44.4
Q ss_pred ccccccccccccCCCceee-cCCCCcchHhhHHHHhhCC-CCccccccccCCCCh
Q psy12643 64 ESSCPICLKLFLVGESAKK-LDCKHTFHSTCILPWLEKT-STCPLCRHEFKTDDA 116 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~-~~C~h~f~~~Ci~~~~~~~-~~CP~Cr~~~~~~~~ 116 (144)
...|+||++.+ ..++. ++|||.||..||..|+... ..||+||..+.....
T Consensus 22 ~~~C~IC~~~~---~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l 73 (100)
T 3lrq_A 22 VFRCFICMEKL---RDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLREL 73 (100)
T ss_dssp HTBCTTTCSBC---SSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CCCCccCCccc---cCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHh
Confidence 88999999999 67777 8999999999999999976 699999999876543
No 20
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.32 E-value=1.8e-12 Score=79.91 Aligned_cols=52 Identities=23% Similarity=0.504 Sum_probs=45.7
Q ss_pred CcccccccccccccCCCceeecCCCCcchHhhHHHHhhC-CCCccccccccCCCCh
Q psy12643 62 EPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEK-TSTCPLCRHEFKTDDA 116 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~~~ 116 (144)
.+...|+||++.+ ..++.++|||.||..||..|+.. ...||+||+.+.....
T Consensus 6 ~~~~~C~IC~~~~---~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l 58 (78)
T 1t1h_A 6 PEYFRCPISLELM---KDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGL 58 (78)
T ss_dssp SSSSSCTTTSCCC---SSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCC
T ss_pred cccCCCCCccccc---cCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhC
Confidence 4478999999999 77888999999999999999986 7889999999876543
No 21
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=5.1e-13 Score=80.74 Aligned_cols=51 Identities=29% Similarity=0.744 Sum_probs=44.5
Q ss_pred CCcccccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccCCCC
Q psy12643 61 HEPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTDD 115 (144)
Q Consensus 61 ~~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 115 (144)
..+...|+||++.+ .. +.++|+|.||..|+..|+.....||+||+.+....
T Consensus 12 ~~~~~~C~IC~~~~---~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 12 LTDEEECCICMDGR---AD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCSSSCCSC---CS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCCCeeCCcCc---cC-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 44578999999998 44 78899999999999999999999999999987654
No 22
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.28 E-value=1.7e-12 Score=77.93 Aligned_cols=50 Identities=34% Similarity=0.817 Sum_probs=42.6
Q ss_pred CcccccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccCC
Q psy12643 62 EPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKT 113 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 113 (144)
.....|+||++.+. ...+.++|||.||..|+..|+.....||+||+.+..
T Consensus 3 ~~~~~C~IC~~~~~--~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCC--SCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCCeeCCcccc--CCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 34678999999983 234778999999999999999988999999998764
No 23
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=3.3e-12 Score=80.24 Aligned_cols=54 Identities=28% Similarity=0.632 Sum_probs=44.6
Q ss_pred CCcccccccccccccCCCc-eeecCCCCcchHhhHHHHhhCC---CCccccccccCCC
Q psy12643 61 HEPESSCPICLKLFLVGES-AKKLDCKHTFHSTCILPWLEKT---STCPLCRHEFKTD 114 (144)
Q Consensus 61 ~~~~~~C~IC~~~~~~~~~-~~~~~C~h~f~~~Ci~~~~~~~---~~CP~Cr~~~~~~ 114 (144)
..+...|+||++.+..... ++.++|||.||..|+..|+... ..||+||+.+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 3447889999999954332 7888999999999999999864 7899999988664
No 24
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1.2e-12 Score=81.58 Aligned_cols=53 Identities=25% Similarity=0.783 Sum_probs=41.7
Q ss_pred CcccccccccccccC-----------CCceeec-CCCCcchHhhHHHHhhCCCCccccccccCCC
Q psy12643 62 EPESSCPICLKLFLV-----------GESAKKL-DCKHTFHSTCILPWLEKTSTCPLCRHEFKTD 114 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~-----------~~~~~~~-~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 114 (144)
.++..|+||++.+.. +...+.+ +|+|.||..||.+|+..+.+||+||+.+...
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 346778888888743 2334455 5999999999999999999999999987643
No 25
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.27 E-value=6.4e-12 Score=82.15 Aligned_cols=49 Identities=33% Similarity=0.834 Sum_probs=44.0
Q ss_pred cccccccccccccCCCceeec-CCCCcchHhhHHHHhhCCCCccccccccCCC
Q psy12643 63 PESSCPICLKLFLVGESAKKL-DCKHTFHSTCILPWLEKTSTCPLCRHEFKTD 114 (144)
Q Consensus 63 ~~~~C~IC~~~~~~~~~~~~~-~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 114 (144)
+...|+||++.+ ..++.+ +|||.||..||..|+.....||+||..+...
T Consensus 14 ~~~~C~IC~~~~---~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYF---IDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBC---SSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CcCCCccCChHH---hCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 488999999999 667776 9999999999999999889999999998764
No 26
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.27 E-value=6.3e-12 Score=80.92 Aligned_cols=49 Identities=31% Similarity=0.708 Sum_probs=43.6
Q ss_pred ccccccccccccCCCceeec-CCCCcchHhhHHHHhhCCCCccccccccCCCC
Q psy12643 64 ESSCPICLKLFLVGESAKKL-DCKHTFHSTCILPWLEKTSTCPLCRHEFKTDD 115 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~-~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 115 (144)
...|+||++.+ ..++.+ +|||.||..||..|+.....||+||..+....
T Consensus 22 ~~~C~IC~~~~---~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 71 (99)
T 2y43_A 22 LLRCGICFEYF---NIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPD 71 (99)
T ss_dssp HTBCTTTCSBC---SSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGG
T ss_pred CCCcccCChhh---CCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhh
Confidence 78899999999 667666 89999999999999998899999999987643
No 27
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.27 E-value=4.4e-12 Score=82.97 Aligned_cols=52 Identities=29% Similarity=0.582 Sum_probs=42.9
Q ss_pred CcccccccccccccCCC---------------ceeecCCCCcchHhhHHHHhhCCCCccccccccCC
Q psy12643 62 EPESSCPICLKLFLVGE---------------SAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKT 113 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~---------------~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 113 (144)
.++..|+||++.|.... ..+.++|+|.||..||..|+..+.+||+||+.+..
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 101 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCccee
Confidence 34788999999985431 24557899999999999999999999999998753
No 28
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.25 E-value=9.7e-12 Score=78.91 Aligned_cols=48 Identities=27% Similarity=0.589 Sum_probs=41.9
Q ss_pred CcccccccccccccCCCceeecC-CCCcchHhhHHHHhhC--CCCccccccccC
Q psy12643 62 EPESSCPICLKLFLVGESAKKLD-CKHTFHSTCILPWLEK--TSTCPLCRHEFK 112 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~~-C~h~f~~~Ci~~~~~~--~~~CP~Cr~~~~ 112 (144)
.+...|+||++.+ ..++.++ |||.||..||..|+.. ...||+||+.+.
T Consensus 11 ~~~~~C~IC~~~~---~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIM---TDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEEC---SSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhh---cCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 4478999999999 7788899 9999999999999973 368999999973
No 29
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.25 E-value=1.6e-12 Score=80.14 Aligned_cols=50 Identities=34% Similarity=0.830 Sum_probs=43.5
Q ss_pred CcccccccccccccCCCceeecCCCCcchHhhHHHHhhC-------CCCccccccccCCC
Q psy12643 62 EPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEK-------TSTCPLCRHEFKTD 114 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~-------~~~CP~Cr~~~~~~ 114 (144)
.+...|+||++.+ ..++.++|||.||..|+..|+.. ...||+||..+...
T Consensus 10 ~~~~~C~IC~~~~---~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 10 QEEVTCPICLELL---TEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCCEETTTTEEC---SSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred ccCCCCcCCCccc---CCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 4578999999999 66778899999999999999985 56899999998764
No 30
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.25 E-value=5.5e-12 Score=78.50 Aligned_cols=51 Identities=35% Similarity=0.864 Sum_probs=44.0
Q ss_pred CcccccccccccccCCCceeecCCCCcchHhhHHHHhhC------CCCccccccccCCCC
Q psy12643 62 EPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEK------TSTCPLCRHEFKTDD 115 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~------~~~CP~Cr~~~~~~~ 115 (144)
.+...|+||++.+ ..++.++|+|.||..|+..|+.. ...||+||..+....
T Consensus 17 ~~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecw_A 17 KEEVTCPICLELL---KEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN 73 (85)
T ss_dssp CTTTSCTTTCSCC---SSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC
T ss_pred ccCCCCcCCChhh---CcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHh
Confidence 4478999999998 66778999999999999999986 668999999987543
No 31
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.25 E-value=5.7e-12 Score=84.35 Aligned_cols=47 Identities=21% Similarity=0.503 Sum_probs=42.5
Q ss_pred ccccccccccccCCCceeecCCCCcchHhhHHHHhhC-CCCccccccccCC
Q psy12643 64 ESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEK-TSTCPLCRHEFKT 113 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~-~~~CP~Cr~~~~~ 113 (144)
...|+||++.+ ..++.++|||.||..||..|+.. ...||+||+.+..
T Consensus 52 ~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELV---FRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBC---SSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHH---cCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 78999999999 77888999999999999999984 4489999999976
No 32
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.25 E-value=8.8e-12 Score=78.36 Aligned_cols=54 Identities=19% Similarity=0.193 Sum_probs=48.1
Q ss_pred cccccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccCCCChhHH
Q psy12643 63 PESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTDDADYE 119 (144)
Q Consensus 63 ~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 119 (144)
+.+.|+||++.+ ..++.++|||.|+..||..|+....+||+|+..+........
T Consensus 13 ~~~~CpI~~~~m---~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn 66 (85)
T 2kr4_A 13 DEFRDPLMDTLM---TDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPV 66 (85)
T ss_dssp TTTBCTTTCSBC---SSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEEC
T ss_pred hheECcccCchh---cCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchH
Confidence 478999999999 889999999999999999999988899999999987655433
No 33
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=6.6e-12 Score=78.16 Aligned_cols=51 Identities=37% Similarity=0.944 Sum_probs=44.1
Q ss_pred CcccccccccccccCCCceeecCCCCcchHhhHHHHhhC------CCCccccccccCCCC
Q psy12643 62 EPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEK------TSTCPLCRHEFKTDD 115 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~------~~~CP~Cr~~~~~~~ 115 (144)
.+...|+||++.+ ..++.++|||.||..|+..|+.. ...||+||..+...+
T Consensus 17 ~~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 17 KEEVTCPICLELL---TQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCCCCTTTCSCC---SSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred cCCCCCCCCCccc---CCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 4478999999998 66778899999999999999976 778999999987543
No 34
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=1.2e-11 Score=73.12 Aligned_cols=44 Identities=39% Similarity=0.853 Sum_probs=38.3
Q ss_pred CCcccccccccccccCCCceeecCCCCcchHhhHHHHhh---CCCCcccc
Q psy12643 61 HEPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLE---KTSTCPLC 107 (144)
Q Consensus 61 ~~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~---~~~~CP~C 107 (144)
..+...|+||++.+ ..++.++|||.||..||..|+. ....||+|
T Consensus 17 ~~~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDIL---QKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBC---SSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchh---CCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 34578999999999 6788889999999999999998 45689998
No 35
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.19 E-value=1.2e-11 Score=79.81 Aligned_cols=54 Identities=22% Similarity=0.164 Sum_probs=48.3
Q ss_pred cccccccccccccCCCceeecCCC-CcchHhhHHHHhhCCCCccccccccCCCChhHH
Q psy12643 63 PESSCPICLKLFLVGESAKKLDCK-HTFHSTCILPWLEKTSTCPLCRHEFKTDDADYE 119 (144)
Q Consensus 63 ~~~~C~IC~~~~~~~~~~~~~~C~-h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 119 (144)
+.+.|+||++.+ ..++.++|| |.||..||..|+....+||+||.++........
T Consensus 21 ~~~~CpI~~~~m---~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn 75 (98)
T 1wgm_A 21 DEFLDPIMSTLM---CDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPN 75 (98)
T ss_dssp TTTBCTTTCSBC---SSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEEC
T ss_pred HhcCCcCccccc---cCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEc
Confidence 378999999999 889999999 999999999999988899999999987765533
No 36
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.17 E-value=3.1e-11 Score=78.12 Aligned_cols=55 Identities=18% Similarity=0.195 Sum_probs=48.8
Q ss_pred CcccccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccCCCChhHH
Q psy12643 62 EPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTDDADYE 119 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 119 (144)
.+.+.|+||++.+ ..++.++|||.||..||..|+....+||+|+.++........
T Consensus 27 p~~~~CpI~~~~m---~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn 81 (100)
T 2kre_A 27 PDEFRDPLMDTLM---TDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPV 81 (100)
T ss_dssp STTTBCTTTCSBC---SSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEEC
T ss_pred cHhhCCcCccCcc---cCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceEC
Confidence 3478999999999 889999999999999999999988899999999987665543
No 37
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.17 E-value=1.3e-11 Score=82.90 Aligned_cols=55 Identities=29% Similarity=0.635 Sum_probs=45.3
Q ss_pred CcccccccccccccCC----CceeecCCCCcchHhhHHHHhhCCCCccccccccCCCCh
Q psy12643 62 EPESSCPICLKLFLVG----ESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTDDA 116 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~----~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 116 (144)
.+...|+||++.+... ...+.++|||.||..||.+|+.....||+||+.+.....
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 63 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCE
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccc
Confidence 3478999999998421 223788999999999999999999999999999876543
No 38
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.17 E-value=1.6e-11 Score=73.04 Aligned_cols=53 Identities=19% Similarity=0.483 Sum_probs=41.2
Q ss_pred cccccccccc-cccCCCc-eeecCCCCcchHhhHHHHhh-CCCCccccccccCCCC
Q psy12643 63 PESSCPICLK-LFLVGES-AKKLDCKHTFHSTCILPWLE-KTSTCPLCRHEFKTDD 115 (144)
Q Consensus 63 ~~~~C~IC~~-~~~~~~~-~~~~~C~h~f~~~Ci~~~~~-~~~~CP~Cr~~~~~~~ 115 (144)
++..|+||++ .+..... .+.++|||.||..|+..|+. ....||+||+.+....
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 3678999999 7743322 24579999999999999976 4567999999987654
No 39
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.17 E-value=1.9e-11 Score=80.11 Aligned_cols=50 Identities=34% Similarity=0.848 Sum_probs=43.0
Q ss_pred ccccccccccccCCCceeecCCCCcchHhhHHHHhhCC---CCccccccccCCCCh
Q psy12643 64 ESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKT---STCPLCRHEFKTDDA 116 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~---~~CP~Cr~~~~~~~~ 116 (144)
...|+||++.+ ..++.++|||.||..||..|+... ..||+||..+.....
T Consensus 21 ~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 73 (112)
T 1jm7_A 21 ILECPICLELI---KEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73 (112)
T ss_dssp HTSCSSSCCCC---SSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTC
T ss_pred CCCCcccChhh---cCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhc
Confidence 67899999998 667778999999999999999855 389999998876543
No 40
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=2.4e-11 Score=70.46 Aligned_cols=43 Identities=35% Similarity=1.007 Sum_probs=36.8
Q ss_pred CcccccccccccccCCCceeecCCCCcchHhhHHHHhh---CCCCcccc
Q psy12643 62 EPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLE---KTSTCPLC 107 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~---~~~~CP~C 107 (144)
.+...|+||++.+ ..++.++|||.||..||..|+. ....||+|
T Consensus 13 ~~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYL---KEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBC---SSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCccc---CccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4578999999999 6677889999999999999954 56689988
No 41
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.16 E-value=2.2e-11 Score=84.27 Aligned_cols=48 Identities=23% Similarity=0.616 Sum_probs=43.3
Q ss_pred ccccccccccccCCCceeecCCCCcchHhhHHHHhhCCC-CccccccccCCC
Q psy12643 64 ESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTS-TCPLCRHEFKTD 114 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~-~CP~Cr~~~~~~ 114 (144)
...|+||++.+ ..++.++|||.||..||..|+.... .||+||..+...
T Consensus 78 ~~~C~IC~~~~---~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELV---YQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBC---SSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhh---cCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 67899999999 7788899999999999999998654 899999999876
No 42
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.16 E-value=1.5e-11 Score=81.60 Aligned_cols=52 Identities=27% Similarity=0.646 Sum_probs=44.9
Q ss_pred CCcccccccccccccCCCceeecCCCCcchHhhHHHHhhCCC-CccccccccCCCC
Q psy12643 61 HEPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTS-TCPLCRHEFKTDD 115 (144)
Q Consensus 61 ~~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~-~CP~Cr~~~~~~~ 115 (144)
..+...|+||++.+ ..++.++|||.||..||..|+.... .||+||..+....
T Consensus 15 ~~~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (118)
T 3hct_A 15 LESKYECPICLMAL---REAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (118)
T ss_dssp CCGGGBCTTTCSBC---SSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCcCChhh---cCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHh
Confidence 34578999999999 7778899999999999999998554 9999999987654
No 43
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.16 E-value=8e-12 Score=82.53 Aligned_cols=49 Identities=31% Similarity=0.769 Sum_probs=43.0
Q ss_pred CcccccccccccccCCCceeecCCCCcchHhhHHHHhhC-CCCccccccccCC
Q psy12643 62 EPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEK-TSTCPLCRHEFKT 113 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~-~~~CP~Cr~~~~~ 113 (144)
.++..|+||++.+ ..++.++|||.||..||..|+.. ...||+||+.+..
T Consensus 13 ~~~~~C~iC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEIL---VEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBC---SSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCccc---CceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 3478999999999 77888999999999999999975 6789999998863
No 44
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=3.9e-11 Score=74.56 Aligned_cols=54 Identities=24% Similarity=0.568 Sum_probs=43.3
Q ss_pred CCcccccccccccccCCCceeecCCC-----CcchHhhHHHHhhCC--CCccccccccCCCC
Q psy12643 61 HEPESSCPICLKLFLVGESAKKLDCK-----HTFHSTCILPWLEKT--STCPLCRHEFKTDD 115 (144)
Q Consensus 61 ~~~~~~C~IC~~~~~~~~~~~~~~C~-----h~f~~~Ci~~~~~~~--~~CP~Cr~~~~~~~ 115 (144)
..+...|.||++.+..+.. .++||. |.||..||.+|+..+ .+||+||..+....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~-l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESP-LITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSC-EECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCCeEcCccccCCCe-eEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 3457889999998865444 568886 999999999999854 58999999987543
No 45
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.11 E-value=3.7e-11 Score=84.10 Aligned_cols=49 Identities=33% Similarity=0.864 Sum_probs=42.1
Q ss_pred cccccccccccccCCCceeec-CCCCcchHhhHHHHhhC-CCCccccccccCCC
Q psy12643 63 PESSCPICLKLFLVGESAKKL-DCKHTFHSTCILPWLEK-TSTCPLCRHEFKTD 114 (144)
Q Consensus 63 ~~~~C~IC~~~~~~~~~~~~~-~C~h~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~ 114 (144)
+...|+||++.+ ..++.+ +|||.||..||..|+.. ...||+||..+...
T Consensus 53 ~~~~C~IC~~~~---~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 103 (165)
T 2ckl_B 53 SELMCPICLDML---KNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK 103 (165)
T ss_dssp HHHBCTTTSSBC---SSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSG
T ss_pred CCCCCcccChHh---hCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCc
Confidence 367899999999 556666 89999999999999986 77899999998543
No 46
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.11 E-value=3.2e-11 Score=79.75 Aligned_cols=50 Identities=36% Similarity=0.694 Sum_probs=44.3
Q ss_pred ccccccccccccCCCceeecCCCCcchHhhHHHHhhC-CCCccccccccCCCCh
Q psy12643 64 ESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEK-TSTCPLCRHEFKTDDA 116 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~~~ 116 (144)
...|+||++.+ ..++.++|||.||..||..|+.. ...||+||+.+...+.
T Consensus 23 ~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 73 (116)
T 1rmd_A 23 SISCQICEHIL---ADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDL 73 (116)
T ss_dssp HTBCTTTCSBC---SSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CCCCCCCCcHh---cCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhc
Confidence 68899999999 77888999999999999999985 7789999999876543
No 47
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.10 E-value=9.8e-12 Score=82.55 Aligned_cols=52 Identities=29% Similarity=0.582 Sum_probs=1.5
Q ss_pred CcccccccccccccCCC---------------ceeecCCCCcchHhhHHHHhhCCCCccccccccCC
Q psy12643 62 EPESSCPICLKLFLVGE---------------SAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKT 113 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~---------------~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 113 (144)
..+..|+||++.|.... ..+.++|+|.||..||..|+..+.+||+||+.+..
T Consensus 46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp CCC----------------------------------------------------------------
T ss_pred CCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 34789999999985421 12234899999999999999999999999998653
No 48
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.10 E-value=2.5e-11 Score=83.17 Aligned_cols=50 Identities=24% Similarity=0.527 Sum_probs=43.0
Q ss_pred CCcccccccccccccCCCceeecCCCCcchHhhHHHHhhCCC-CccccccccCC
Q psy12643 61 HEPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTS-TCPLCRHEFKT 113 (144)
Q Consensus 61 ~~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~-~CP~Cr~~~~~ 113 (144)
..+...|+||++.+ ..++.++|||.||..||..|+.... .||+||..+..
T Consensus 28 l~~~~~C~IC~~~~---~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 28 LEAKYLCSACRNVL---RRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp CCGGGBCTTTCSBC---SSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred CCcCcCCCCCChhh---cCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 34589999999999 7778899999999999999998554 89999997643
No 49
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.06 E-value=1.3e-10 Score=76.98 Aligned_cols=48 Identities=25% Similarity=0.613 Sum_probs=42.3
Q ss_pred ccccccccccccCCCceeec-CCCCcchHhhHHHHhhCCCCccccccccCCCCh
Q psy12643 64 ESSCPICLKLFLVGESAKKL-DCKHTFHSTCILPWLEKTSTCPLCRHEFKTDDA 116 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~-~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 116 (144)
...|+||++.+ ..++.+ +|||.||..||..|+. ..||+||..+.....
T Consensus 22 ~~~C~IC~~~~---~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~ 70 (117)
T 1jm7_B 22 LLRCSRCTNIL---REPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDL 70 (117)
T ss_dssp TTSCSSSCSCC---SSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSC
T ss_pred CCCCCCCChHh---hCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccccc
Confidence 89999999999 777888 8999999999999987 789999999865433
No 50
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.05 E-value=4.2e-11 Score=80.28 Aligned_cols=57 Identities=28% Similarity=0.596 Sum_probs=46.4
Q ss_pred cCCCcccccccccccccCC----CceeecCCCCcchHhhHHHHhhCCCCccccccccCCCC
Q psy12643 59 TSHEPESSCPICLKLFLVG----ESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTDD 115 (144)
Q Consensus 59 ~~~~~~~~C~IC~~~~~~~----~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 115 (144)
....+...|+||++.+... ...+.++|||.||..||.+|+....+||+||+.+..++
T Consensus 67 ~i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 67 YIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 127 (133)
T ss_dssp BCSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred ccCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence 3445688899999988431 22377899999999999999999999999999987654
No 51
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.04 E-value=1.8e-10 Score=71.25 Aligned_cols=55 Identities=22% Similarity=0.564 Sum_probs=41.9
Q ss_pred CCcccccccccccccCCCceeec--CCCCcchHhhHHHHhh-CCCCccccccccCCCCh
Q psy12643 61 HEPESSCPICLKLFLVGESAKKL--DCKHTFHSTCILPWLE-KTSTCPLCRHEFKTDDA 116 (144)
Q Consensus 61 ~~~~~~C~IC~~~~~~~~~~~~~--~C~h~f~~~Ci~~~~~-~~~~CP~Cr~~~~~~~~ 116 (144)
..++..|+||++.+... ....+ +|||.||..|+..++. ....||.||+.+.....
T Consensus 8 ~~~~~~CpICle~~~~~-d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEID-DINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCBCTTTCCBCCTT-TTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred cccCCcCCccCccCccc-cccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 35578999999987432 22333 4999999999999875 45689999999876544
No 52
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.02 E-value=1.2e-10 Score=71.26 Aligned_cols=44 Identities=23% Similarity=0.504 Sum_probs=39.4
Q ss_pred ccccccccccccCCCceeecCCCCc-chHhhHHHHhhCCCCccccccccCCC
Q psy12643 64 ESSCPICLKLFLVGESAKKLDCKHT-FHSTCILPWLEKTSTCPLCRHEFKTD 114 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~C~h~-f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 114 (144)
...|+||++.+ ..++.++|||. ||..|+..| ..||+||+.+...
T Consensus 24 ~~~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 24 EKLCKICMDRN---IAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFK 68 (74)
T ss_dssp HTBCTTTSSSB---CCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSEE
T ss_pred CCCCCCCCCCC---CCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccCc
Confidence 78899999998 78888999999 999999887 8899999988654
No 53
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.01 E-value=7.1e-11 Score=68.41 Aligned_cols=48 Identities=25% Similarity=0.513 Sum_probs=40.2
Q ss_pred CcccccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccCCCC
Q psy12643 62 EPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTDD 115 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 115 (144)
.+...|+||++.+ ..++.++|||.||..|+.. ....||+||+.+....
T Consensus 4 ~~~~~C~IC~~~~---~~p~~l~CgH~fC~~Ci~~---~~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 4 FQFLRCQQCQAEA---KCPKLLPCLHTLCSGCLEA---SGMQCPICQAPWPLGA 51 (56)
T ss_dssp CCCSSCSSSCSSC---BCCSCSTTSCCSBTTTCSS---SSSSCSSCCSSSSCCS
T ss_pred ccCCCceEeCCcc---CCeEEcCCCCcccHHHHcc---CCCCCCcCCcEeecCC
Confidence 4477899999999 6678899999999999876 4668999999887543
No 54
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.99 E-value=3.6e-10 Score=69.08 Aligned_cols=52 Identities=21% Similarity=0.623 Sum_probs=41.6
Q ss_pred CcccccccccccccCCCceeecCCCCcchHhhHHHHhhCC--CCccccccccCCCC
Q psy12643 62 EPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKT--STCPLCRHEFKTDD 115 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~--~~CP~Cr~~~~~~~ 115 (144)
+....|.||.+.+..+. ....|+|.||..||.+|+..+ .+||+||+.+....
T Consensus 13 ~~i~~C~IC~~~i~~g~--~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp SSSCBCSSSCCBCSSSE--ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred CCCCcCcchhhHcccCC--ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence 34688999999985432 223799999999999999866 78999999887543
No 55
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.99 E-value=2e-10 Score=68.30 Aligned_cols=49 Identities=20% Similarity=0.438 Sum_probs=41.9
Q ss_pred CcccccccccccccCCCceeec--CCCCc-chHhhHHHHhhCCCCccccccccCC
Q psy12643 62 EPESSCPICLKLFLVGESAKKL--DCKHT-FHSTCILPWLEKTSTCPLCRHEFKT 113 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~--~C~h~-f~~~Ci~~~~~~~~~CP~Cr~~~~~ 113 (144)
.++..|.||++.. ...+.+ +|||. ||..|+..|......||+||+.+..
T Consensus 6 ~~~~~C~IC~~~~---~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 6 NAIEPCVICQGRP---KNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGGSCCTTTSSSC---SCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CCcCCCCcCCCCC---CCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 3577899999987 666665 99998 8999999999988899999998854
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.97 E-value=3.8e-10 Score=88.52 Aligned_cols=48 Identities=31% Similarity=0.711 Sum_probs=43.2
Q ss_pred ccccccccccccCCCceeecCCCCcchHhhHHHHhh-CCCCccccccccCCC
Q psy12643 64 ESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLE-KTSTCPLCRHEFKTD 114 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~-~~~~CP~Cr~~~~~~ 114 (144)
...|+||++.+ ..++.++|||.||..|+..|+. ....||+||+.+...
T Consensus 332 ~~~C~ICle~~---~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAEND---KDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSB---CCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCC---CCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 47899999998 7788899999999999999998 788999999988654
No 57
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.95 E-value=4.1e-10 Score=84.15 Aligned_cols=52 Identities=13% Similarity=0.111 Sum_probs=45.1
Q ss_pred cccccccccccccCCCceeecCCCCcchHhhHHHHhhC-CCCccccccccCCCChh
Q psy12643 63 PESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEK-TSTCPLCRHEFKTDDAD 117 (144)
Q Consensus 63 ~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~ 117 (144)
+...|+||++.+ ..|++++|||+||..||..|+.. ..+||+||.++......
T Consensus 207 ~~~~c~i~~~~~---~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~ 259 (281)
T 2c2l_A 207 DYLCGKISFELM---REPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLI 259 (281)
T ss_dssp STTBCTTTCSBC---SSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCE
T ss_pred cccCCcCcCCHh---cCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCc
Confidence 478899999999 88999999999999999999985 44599999999765544
No 58
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.94 E-value=4.1e-10 Score=79.06 Aligned_cols=52 Identities=27% Similarity=0.643 Sum_probs=44.8
Q ss_pred CCcccccccccccccCCCceeecCCCCcchHhhHHHHhhCC-CCccccccccCCCC
Q psy12643 61 HEPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKT-STCPLCRHEFKTDD 115 (144)
Q Consensus 61 ~~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~-~~CP~Cr~~~~~~~ 115 (144)
..+...|+||++.+ ..++.++|||.||..||..|+... ..||+||..+....
T Consensus 15 ~~~~~~C~IC~~~~---~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (170)
T 3hcs_A 15 LESKYECPICLMAL---REAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (170)
T ss_dssp CCGGGBCTTTCSBC---SSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCChhh---cCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhh
Confidence 34588999999999 778889999999999999999754 49999999987653
No 59
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.93 E-value=6e-10 Score=71.13 Aligned_cols=53 Identities=26% Similarity=0.584 Sum_probs=43.6
Q ss_pred CcccccccccccccCCCceeecC-CCCcchHhhHHHHhhCC------CCccc--cccc-cCCCChh
Q psy12643 62 EPESSCPICLKLFLVGESAKKLD-CKHTFHSTCILPWLEKT------STCPL--CRHE-FKTDDAD 117 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~~-C~h~f~~~Ci~~~~~~~------~~CP~--Cr~~-~~~~~~~ 117 (144)
...+.|+||++.| ..++.++ |||.||..||..|+... ..||+ |+.. +...+..
T Consensus 5 ~~~~~CPI~~~~~---~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~ 67 (94)
T 2yu4_A 5 SSGFTCPITKEEM---KKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLI 67 (94)
T ss_dssp SSCCBCTTTCSBC---SSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEE
T ss_pred CcEeECcCcCchh---cCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCc
Confidence 4478999999999 7889996 99999999999999743 48999 9876 6554444
No 60
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.92 E-value=5e-10 Score=66.34 Aligned_cols=48 Identities=19% Similarity=0.443 Sum_probs=40.8
Q ss_pred cccccccccccccCCCceeec--CCCCc-chHhhHHHHhhCCCCccccccccCC
Q psy12643 63 PESSCPICLKLFLVGESAKKL--DCKHT-FHSTCILPWLEKTSTCPLCRHEFKT 113 (144)
Q Consensus 63 ~~~~C~IC~~~~~~~~~~~~~--~C~h~-f~~~Ci~~~~~~~~~CP~Cr~~~~~ 113 (144)
....|.||++.. .....+ ||||. ||..|+..|......||+||+++..
T Consensus 6 ~~~~C~IC~~~~---~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRP---RDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSB---SCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred cCCCCcccCCcC---CCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 467899999887 555555 99998 9999999999888899999998854
No 61
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=1.5e-09 Score=66.29 Aligned_cols=45 Identities=22% Similarity=0.518 Sum_probs=38.7
Q ss_pred ccccccccccccCCCceeecCCCCc-chHhhHHHHhhCCCCccccccccCCCC
Q psy12643 64 ESSCPICLKLFLVGESAKKLDCKHT-FHSTCILPWLEKTSTCPLCRHEFKTDD 115 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~C~h~-f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 115 (144)
...|+||++.+ ..++.++|||. ||..|+.. ...||+||+.+....
T Consensus 25 ~~~C~IC~~~~---~~~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~~ 70 (75)
T 2ecg_A 25 EKLCKICMDRN---IAIVFVPCGHLVTCKQCAEA----VDKCPMCYTVITFKQ 70 (75)
T ss_dssp HHSCSSSCSSC---CCBCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCCCC
T ss_pred CCCCCcCCCCC---CCEEEecCCCHHHHHHHhhC----CCCCccCCceecCcE
Confidence 77899999988 77888999999 99999864 478999999987643
No 62
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.87 E-value=4.1e-09 Score=74.74 Aligned_cols=54 Identities=15% Similarity=0.089 Sum_probs=46.4
Q ss_pred CcccccccccccccCCCceeecCCCCcchHhhHHHHhhC-CCCccccccccCCCChhH
Q psy12643 62 EPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEK-TSTCPLCRHEFKTDDADY 118 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~ 118 (144)
.+.+.|+||++.+ ..|+.++|||.|+..||..|+.. ..+||+|+.++.......
T Consensus 104 p~~f~CPI~~elm---~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~p 158 (179)
T 2f42_A 104 PDYLCGKISFELM---REPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIP 158 (179)
T ss_dssp CGGGBCTTTCSBC---SSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEE
T ss_pred cHhhcccCccccC---CCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcc
Confidence 3478999999999 88999999999999999999985 347999999998765553
No 63
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.81 E-value=4.4e-09 Score=78.35 Aligned_cols=54 Identities=28% Similarity=0.525 Sum_probs=45.1
Q ss_pred CCcccccccccccccCCCceeec-CCCCcchHhhHHHHhhCC--CCccc--cccccCCCChh
Q psy12643 61 HEPESSCPICLKLFLVGESAKKL-DCKHTFHSTCILPWLEKT--STCPL--CRHEFKTDDAD 117 (144)
Q Consensus 61 ~~~~~~C~IC~~~~~~~~~~~~~-~C~h~f~~~Ci~~~~~~~--~~CP~--Cr~~~~~~~~~ 117 (144)
......|+||++.| ..|+.. .|||.||..||..|+... ..||+ |++.+...+..
T Consensus 178 ~~~el~CPIcl~~f---~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~ 236 (267)
T 3htk_C 178 GKIELTCPITCKPY---EAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFV 236 (267)
T ss_dssp SBCCSBCTTTSSBC---SSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEE
T ss_pred CceeeECcCccCcc---cCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCC
Confidence 34588999999999 777764 899999999999999753 47999 99988776655
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=1.1e-08 Score=61.38 Aligned_cols=47 Identities=26% Similarity=0.591 Sum_probs=39.3
Q ss_pred CCcccccccccccccCCCceeecCCCCc-chHhhHHHHhhCCCCccccccccCCC
Q psy12643 61 HEPESSCPICLKLFLVGESAKKLDCKHT-FHSTCILPWLEKTSTCPLCRHEFKTD 114 (144)
Q Consensus 61 ~~~~~~C~IC~~~~~~~~~~~~~~C~h~-f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 114 (144)
..+...|.||++.. ..++.+||+|. ||..|+.. ...||+||+.+...
T Consensus 12 ~~~~~~C~IC~~~~---~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 12 EENSKDCVVCQNGT---VNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQES 59 (68)
T ss_dssp CCCSSCCSSSSSSC---CCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred CCCCCCCCCcCcCC---CCEEEECCCChhhhHHHHhc----CCCCCCCCcchhce
Confidence 34478899999887 77888999999 99999874 47899999988653
No 65
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.68 E-value=6.8e-09 Score=64.14 Aligned_cols=44 Identities=23% Similarity=0.541 Sum_probs=38.1
Q ss_pred ccccccccccccCCCceeecCCCCc-chHhhHHHHhhCCCCccccccccCCC
Q psy12643 64 ESSCPICLKLFLVGESAKKLDCKHT-FHSTCILPWLEKTSTCPLCRHEFKTD 114 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~C~h~-f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 114 (144)
...|.||++.+ ..++.+||||. ||..|+..| ..||+||+.+...
T Consensus 18 ~~~C~IC~~~~---~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEE---INSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSB---CCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCEeEEeCccc---CcEEEECCCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 67899999988 77888999999 999998765 4899999988654
No 66
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.57 E-value=3.8e-08 Score=76.38 Aligned_cols=44 Identities=27% Similarity=0.639 Sum_probs=39.3
Q ss_pred ccccccccccccCCCceeecCCCCc-chHhhHHHHhhCCCCccccccccCCC
Q psy12643 64 ESSCPICLKLFLVGESAKKLDCKHT-FHSTCILPWLEKTSTCPLCRHEFKTD 114 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~C~h~-f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 114 (144)
...|+||++.+ ..++.++|||. ||..|+..| ..||+||..+...
T Consensus 295 ~~~C~IC~~~~---~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 295 ERTCKVCMDKE---VSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKGT 339 (345)
T ss_dssp TCBCTTTSSSB---CCEEEETTCCEEECTTTGGGC----SBCTTTCCBCCEE
T ss_pred CCCCCccCCcC---CceEEcCCCChhHhHHHHhcC----CcCCCCCCCccCe
Confidence 78999999998 78888999999 999999876 7899999988654
No 67
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.56 E-value=6.9e-08 Score=56.51 Aligned_cols=49 Identities=24% Similarity=0.670 Sum_probs=38.3
Q ss_pred CcccccccccccccCCCceeecCCC--C---cchHhhHHHHhh--CCCCccccccccCC
Q psy12643 62 EPESSCPICLKLFLVGESAKKLDCK--H---TFHSTCILPWLE--KTSTCPLCRHEFKT 113 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~~C~--h---~f~~~Ci~~~~~--~~~~CP~Cr~~~~~ 113 (144)
++...|.||++.. .....+||. + .||..|+.+|+. ....||+|+..+..
T Consensus 4 ~~~~~CrIC~~~~---~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEEL---GNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEEC---SCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCC---CCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 4577899999874 334567854 4 899999999997 46789999998764
No 68
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.53 E-value=4.3e-08 Score=62.25 Aligned_cols=49 Identities=24% Similarity=0.649 Sum_probs=36.4
Q ss_pred CcccccccccccccCCCceeecCCCCcchHhhHHHHhhC--------CCCccc--cccc
Q psy12643 62 EPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEK--------TSTCPL--CRHE 110 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~--------~~~CP~--Cr~~ 110 (144)
+....|+||++.+.........+|||.||..|+..|+.. ...||. |+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 346789999998843222222479999999999999862 236999 9988
No 69
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.53 E-value=2.8e-08 Score=58.38 Aligned_cols=50 Identities=12% Similarity=0.254 Sum_probs=43.7
Q ss_pred ccccccccccccCCCceeec-CCCCcchHhhHHHHhhCCCCccccccccCCCCh
Q psy12643 64 ESSCPICLKLFLVGESAKKL-DCKHTFHSTCILPWLEKTSTCPLCRHEFKTDDA 116 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~-~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 116 (144)
.+.|+|+.+.+ ..++.+ ++||.|...||.+|+....+||+.+.++..++.
T Consensus 3 ~~~CpIs~~~m---~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~L 53 (61)
T 2bay_A 3 HMLCAISGKVP---RRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEI 53 (61)
T ss_dssp -CCCTTTCSCC---SSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGC
T ss_pred eEEecCCCCCC---CCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhc
Confidence 46799999999 778888 899999999999999977789999999876554
No 70
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.52 E-value=2e-08 Score=77.41 Aligned_cols=53 Identities=28% Similarity=0.723 Sum_probs=40.0
Q ss_pred CcccccccccccccC-CCceee----cCCCCcchHhhHHHHhhCC-----------CCccccccccCCC
Q psy12643 62 EPESSCPICLKLFLV-GESAKK----LDCKHTFHSTCILPWLEKT-----------STCPLCRHEFKTD 114 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~-~~~~~~----~~C~h~f~~~Ci~~~~~~~-----------~~CP~Cr~~~~~~ 114 (144)
+....|+||+..+.. +..+.. ..|+|.||..|+.+|+... ..||.||+++..+
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 347789999998865 322222 3699999999999999731 3699999988653
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.08 E-value=2.9e-06 Score=54.05 Aligned_cols=46 Identities=22% Similarity=0.483 Sum_probs=36.0
Q ss_pred ccccccccccCCCceeecCCCCcchHhhHHHHhh-CCCCccccccccCC
Q psy12643 66 SCPICLKLFLVGESAKKLDCKHTFHSTCILPWLE-KTSTCPLCRHEFKT 113 (144)
Q Consensus 66 ~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~-~~~~CP~Cr~~~~~ 113 (144)
.|.+|-..+. ...+.+||.|.||.+|+..|.+ ..+.||.|+.++..
T Consensus 3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 4778866652 3445569999999999999986 56889999998754
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.66 E-value=2.9e-05 Score=57.28 Aligned_cols=51 Identities=22% Similarity=0.617 Sum_probs=39.4
Q ss_pred cccccccccccccCCCceeecCCCCcchHhhHHHHhhCC--CCccccccccCCCC
Q psy12643 63 PESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKT--STCPLCRHEFKTDD 115 (144)
Q Consensus 63 ~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~--~~CP~Cr~~~~~~~ 115 (144)
.-..|.||.+....+. ..-.|++.||..|+..|+... ..||.|+..++...
T Consensus 179 ~i~~C~iC~~iv~~g~--~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~ 231 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 231 (238)
T ss_dssp TCCBCTTTCSBCSSCE--ECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCC
T ss_pred CCCcCcchhhHHhCCc--ccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Confidence 3677999999885332 222499999999999999754 48999999887654
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.67 E-value=0.0059 Score=38.27 Aligned_cols=47 Identities=21% Similarity=0.533 Sum_probs=38.3
Q ss_pred ccccccccccccCCCceeecCC-CCcchHhhHHHHhhCCCCccccccccCCCC
Q psy12643 64 ESSCPICLKLFLVGESAKKLDC-KHTFHSTCILPWLEKTSTCPLCRHEFKTDD 115 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~C-~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 115 (144)
.+-|..||-.. . ....| .|..|..|+..++..+..||+|..+++.+-
T Consensus 28 ~~nCKsCWf~~---k--~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl 75 (99)
T 2ko5_A 28 PQFCKSCWFEN---K--GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKL 75 (99)
T ss_dssp CCCCCSSCSCC---S--SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCS
T ss_pred cccChhhcccc---C--CeeeecchhhHHHHHHHHHhhccCCcccCCcCCcce
Confidence 67799998554 2 34456 699999999999999999999999987653
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.49 E-value=0.02 Score=35.91 Aligned_cols=32 Identities=19% Similarity=0.456 Sum_probs=24.8
Q ss_pred ccccccccccccCCCceee--cCCCCcchHhhHHHH
Q psy12643 64 ESSCPICLKLFLVGESAKK--LDCKHTFHSTCILPW 97 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~--~~C~h~f~~~Ci~~~ 97 (144)
+..|.||.+.+. ..++. +.|+|.||..|+..+
T Consensus 3 e~~C~~C~~~~~--~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPA--QDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSC--CBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCC--CCceEECCcCChHHhHHHCHHH
Confidence 578999997532 34444 789999999999973
No 75
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=92.13 E-value=0.25 Score=42.93 Aligned_cols=53 Identities=21% Similarity=0.235 Sum_probs=46.7
Q ss_pred ccccccccccccCCCceeecCCC-CcchHhhHHHHhhCCCCccccccccCCCChhHH
Q psy12643 64 ESSCPICLKLFLVGESAKKLDCK-HTFHSTCILPWLEKTSTCPLCRHEFKTDDADYE 119 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~C~-h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 119 (144)
.+.|+|-.+.+ ..|+.++.| +.|-...|.+|+....+||.-|.++...+..-.
T Consensus 891 ~F~cPIs~~lM---~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN 944 (968)
T 3m62_A 891 EFLDPLMYTIM---KDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPN 944 (968)
T ss_dssp GGBCTTTCSBC---SSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEEC
T ss_pred HhCCcchhhHH---hCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCccccccc
Confidence 78899999999 889999987 699999999999988899999999987765533
No 76
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=90.79 E-value=0.17 Score=29.52 Aligned_cols=45 Identities=22% Similarity=0.549 Sum_probs=30.7
Q ss_pred CcccccccccccccCCCceee-cCCCCcchHhhHHHHhhCC----CCccccccc
Q psy12643 62 EPESSCPICLKLFLVGESAKK-LDCKHTFHSTCILPWLEKT----STCPLCRHE 110 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~-~~C~h~f~~~Ci~~~~~~~----~~CP~Cr~~ 110 (144)
.....|.||.+. ...+. -.|...||..|+...+... -.|+.|...
T Consensus 10 ~~~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 10 APGARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CTTCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 346779999753 22222 2599999999997666533 259999764
No 77
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=87.71 E-value=0.44 Score=33.42 Aligned_cols=50 Identities=24% Similarity=0.451 Sum_probs=33.9
Q ss_pred ccccccccccccCCCc---eeec-CCCCcchHhhHHH------Hhh-----CCCCccccccccCC
Q psy12643 64 ESSCPICLKLFLVGES---AKKL-DCKHTFHSTCILP------WLE-----KTSTCPLCRHEFKT 113 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~---~~~~-~C~h~f~~~Ci~~------~~~-----~~~~CP~Cr~~~~~ 113 (144)
...|+||...+..++. .+.- .|...||..|+.- .+. ....||.|+..-+.
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~ 66 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPA 66 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSC
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCH
Confidence 3569999998865442 3333 5999999999731 111 25689999876553
No 78
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=87.70 E-value=0.12 Score=29.76 Aligned_cols=49 Identities=22% Similarity=0.438 Sum_probs=32.0
Q ss_pred CcccccccccccccCCCceeec-CCCCcchHhhHHHHhh-----CCCCccccccc
Q psy12643 62 EPESSCPICLKLFLVGESAKKL-DCKHTFHSTCILPWLE-----KTSTCPLCRHE 110 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~-~C~h~f~~~Ci~~~~~-----~~~~CP~Cr~~ 110 (144)
.+...|+||...+..+...+.- .|...||..|+.--.. ....||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 4467799998877433333333 5899999999742211 34569999754
No 79
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=86.93 E-value=0.63 Score=28.47 Aligned_cols=34 Identities=18% Similarity=0.393 Sum_probs=22.0
Q ss_pred cccccccccccccCCCceeecCCCCcchHhhHHHH
Q psy12643 63 PESSCPICLKLFLVGESAKKLDCKHTFHSTCILPW 97 (144)
Q Consensus 63 ~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~ 97 (144)
.+..|.||--.- .+.....--|+..||..|+.+.
T Consensus 14 ~D~~C~VC~~~t-~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCEVWT-AESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTCCCC-SSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCcccCcccccc-ccceeccccccccccHhhcccc
Confidence 488899995322 1111111237999999999986
No 80
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=86.15 E-value=1.8 Score=26.21 Aligned_cols=37 Identities=16% Similarity=0.230 Sum_probs=28.5
Q ss_pred CcccccccccccccCCCceeecC--CCCcchHhhHHHHhh
Q psy12643 62 EPESSCPICLKLFLVGESAKKLD--CKHTFHSTCILPWLE 99 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~~--C~h~f~~~Ci~~~~~ 99 (144)
.....|.+|.+.++. .+.++-| =.|.||..|-...++
T Consensus 13 ~a~l~CtlC~erLEd-tHFVQCPsv~~HkFCFpCsr~sIk 51 (93)
T 2cs3_A 13 SGPLCCTICHERLED-THFVQCPSVPSHKFCFPCSRESIK 51 (93)
T ss_dssp CCSCCCSSSCSCCSS-TTSEECSSCSSCEECHHHHHHHHH
T ss_pred CCeeEeecchhhhcc-CceeeCCCccCCeeeccccHHHHH
Confidence 447889999999843 4555555 379999999988877
No 81
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=85.92 E-value=0.49 Score=29.64 Aligned_cols=45 Identities=22% Similarity=0.286 Sum_probs=27.7
Q ss_pred ccccccccccccCCCceeec-CCCCcchHhhHHHHhh---CCCCccccccc
Q psy12643 64 ESSCPICLKLFLVGESAKKL-DCKHTFHSTCILPWLE---KTSTCPLCRHE 110 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~-~C~h~f~~~Ci~~~~~---~~~~CP~Cr~~ 110 (144)
...| ||......+ ..+.- .|...||..|+..-.. ....||.|+..
T Consensus 28 ~vrC-iC~~~~~~~-~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 28 VTRC-ICGFTHDDG-YMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp BCCC-TTSCCSCSS-CEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred CEEe-ECCCccCCC-cEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 4567 887654322 22222 5999999999854222 23469999743
No 82
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=83.02 E-value=0.75 Score=24.94 Aligned_cols=43 Identities=28% Similarity=0.594 Sum_probs=25.8
Q ss_pred ccccccccccCCCceee-cCCCCcchHhhHHHHhhC----CCCcccccc
Q psy12643 66 SCPICLKLFLVGESAKK-LDCKHTFHSTCILPWLEK----TSTCPLCRH 109 (144)
Q Consensus 66 ~C~IC~~~~~~~~~~~~-~~C~h~f~~~Ci~~~~~~----~~~CP~Cr~ 109 (144)
.|.||...-.. ...+. -.|...||..|+..-+.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~~-~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGED-DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCC-SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCC-CCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 47888754321 12222 258899999999643332 224888864
No 83
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=81.35 E-value=0.83 Score=25.93 Aligned_cols=44 Identities=25% Similarity=0.667 Sum_probs=29.2
Q ss_pred CcccccccccccccCCCceeec-CCCCcchHhhHHHHhhC----CCCcccccc
Q psy12643 62 EPESSCPICLKLFLVGESAKKL-DCKHTFHSTCILPWLEK----TSTCPLCRH 109 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~-~C~h~f~~~Ci~~~~~~----~~~CP~Cr~ 109 (144)
..+..|.+|... ...+.- .|...||..|+..-+.. .-.||.|+.
T Consensus 9 ~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 346789999763 222222 58899999999764432 225999965
No 84
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=80.81 E-value=0.57 Score=27.62 Aligned_cols=48 Identities=27% Similarity=0.445 Sum_probs=30.9
Q ss_pred ccccccccccccCCCceeec-CCCCcchHhhHHHHhh----CCCCccccccccC
Q psy12643 64 ESSCPICLKLFLVGESAKKL-DCKHTFHSTCILPWLE----KTSTCPLCRHEFK 112 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~-~C~h~f~~~Ci~~~~~----~~~~CP~Cr~~~~ 112 (144)
...|.||..... +...+.- .|...||..|+..-.. ..-.||.|+..+.
T Consensus 18 ~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 18 IWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 566999987642 2222222 5899999999864333 2346999976554
No 85
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=79.58 E-value=2.1 Score=23.31 Aligned_cols=43 Identities=16% Similarity=0.280 Sum_probs=26.1
Q ss_pred ccccccccccCCCceeec--CCCCcchHhhHHH----HhhCCCCccccc
Q psy12643 66 SCPICLKLFLVGESAKKL--DCKHTFHSTCILP----WLEKTSTCPLCR 108 (144)
Q Consensus 66 ~C~IC~~~~~~~~~~~~~--~C~h~f~~~Ci~~----~~~~~~~CP~Cr 108 (144)
.|.+|...+..+...+.- .|...||..|+.- .......||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 467887776433333332 4888999999741 112556788874
No 86
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=76.48 E-value=2.5 Score=25.09 Aligned_cols=48 Identities=23% Similarity=0.461 Sum_probs=30.3
Q ss_pred ccccccccccccCCCceeec-CCCCcchHhhHHHHh-----hCCCCccccccccC
Q psy12643 64 ESSCPICLKLFLVGESAKKL-DCKHTFHSTCILPWL-----EKTSTCPLCRHEFK 112 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~-~C~h~f~~~Ci~~~~-----~~~~~CP~Cr~~~~ 112 (144)
...| ||......+...+.- .|...||..|+.--. .....||.|+....
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 4556 898776322333333 599999999984211 13457999987543
No 87
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=74.89 E-value=0.91 Score=25.75 Aligned_cols=46 Identities=22% Similarity=0.453 Sum_probs=29.3
Q ss_pred CcccccccccccccCCCceee-cCCCCcchHhhHHHHhhC----CCCcccccccc
Q psy12643 62 EPESSCPICLKLFLVGESAKK-LDCKHTFHSTCILPWLEK----TSTCPLCRHEF 111 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~-~~C~h~f~~~Ci~~~~~~----~~~CP~Cr~~~ 111 (144)
..+..|.+|... ...+. -.|...||..|+..-+.. .-.||.|+...
T Consensus 7 ~~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG----GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC----SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC----CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 346779999753 22222 258889999998753332 22599997643
No 88
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=74.16 E-value=2.6 Score=32.62 Aligned_cols=57 Identities=18% Similarity=0.325 Sum_probs=36.7
Q ss_pred ccccccccccccCCCceee-cCCCCcch--HhhHHHHhh--CCCCccccccccCCCChhHHHHHH
Q psy12643 64 ESSCPICLKLFLVGESAKK-LDCKHTFH--STCILPWLE--KTSTCPLCRHEFKTDDADYEAYKV 123 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~-~~C~h~f~--~~Ci~~~~~--~~~~CP~Cr~~~~~~~~~~~~~~~ 123 (144)
...|+|-...+ ..+.+ ..|.|.-| ..-+..+.. ..-.||+|.+.+...+..+-.+..
T Consensus 215 SL~CPlS~~ri---~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~ 276 (360)
T 4fo9_A 215 SLMCPLGKMRL---TIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFM 276 (360)
T ss_dssp ESBCTTTCSBC---SSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHH
T ss_pred eeeCCCcccee---ccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHH
Confidence 56798887777 55544 46999844 333333333 334699999998877666544433
No 89
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=73.62 E-value=0.86 Score=31.60 Aligned_cols=46 Identities=30% Similarity=0.613 Sum_probs=30.0
Q ss_pred cccccccccccccCCCceeecCCCCcchHhhHHHHhhC----CCCcccccccc
Q psy12643 63 PESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEK----TSTCPLCRHEF 111 (144)
Q Consensus 63 ~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~----~~~CP~Cr~~~ 111 (144)
.+..|.+|... |.-...-.|...||..|+..-+.. .-.||.|+..-
T Consensus 3 ~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 36779999744 232222258899999998654442 23599998754
No 90
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=73.46 E-value=1.9 Score=24.48 Aligned_cols=43 Identities=19% Similarity=0.316 Sum_probs=27.5
Q ss_pred cccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCcccc
Q psy12643 65 SSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLC 107 (144)
Q Consensus 65 ~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~C 107 (144)
..|-.|+..+.......-..|++.||.+|=.-.-..-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4598998888321111223599999999954322355679987
No 91
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=72.97 E-value=3 Score=23.97 Aligned_cols=33 Identities=27% Similarity=0.565 Sum_probs=22.7
Q ss_pred CcccccccccccccCCCceeec--CCCCcchHhhH
Q psy12643 62 EPESSCPICLKLFLVGESAKKL--DCKHTFHSTCI 94 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~--~C~h~f~~~Ci 94 (144)
.....|.+|...+..+...+.- .|...||..|+
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICT 40 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhcc
Confidence 3467899999887544444333 68999999997
No 92
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=71.26 E-value=1.1 Score=27.38 Aligned_cols=53 Identities=15% Similarity=0.266 Sum_probs=31.6
Q ss_pred CCcccccccccccccCCCceeec--CCCCcchHhhHHHHhh--CCCCccccccccCC
Q psy12643 61 HEPESSCPICLKLFLVGESAKKL--DCKHTFHSTCILPWLE--KTSTCPLCRHEFKT 113 (144)
Q Consensus 61 ~~~~~~C~IC~~~~~~~~~~~~~--~C~h~f~~~Ci~~~~~--~~~~CP~Cr~~~~~ 113 (144)
..++..|.||...-......+++ .|.-.||..|+..-.. ..-.||.|......
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~ 78 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRAR 78 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTS
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccch
Confidence 34578899998653111122222 5888999999864322 22358888765443
No 93
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=70.97 E-value=0.28 Score=27.92 Aligned_cols=36 Identities=25% Similarity=0.397 Sum_probs=21.3
Q ss_pred Ccccccccccc-cccCCCceeecCCCCcchHhhHHHH
Q psy12643 62 EPESSCPICLK-LFLVGESAKKLDCKHTFHSTCILPW 97 (144)
Q Consensus 62 ~~~~~C~IC~~-~~~~~~~~~~~~C~h~f~~~Ci~~~ 97 (144)
.+...|.||.. .|..+....-..|.-.||..|-..+
T Consensus 7 ~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v 43 (62)
T 2a20_A 7 GDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRV 43 (62)
T ss_dssp SCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEE
T ss_pred CCcchhhhhccceeccCCCccccccCCeeecccCCEe
Confidence 45788999976 4443333334456666666664433
No 94
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=70.52 E-value=2 Score=24.43 Aligned_cols=50 Identities=18% Similarity=0.527 Sum_probs=31.0
Q ss_pred CcccccccccccccCCCceeec--CCCCcchHhhHHHHh-------hCCCCcccccccc
Q psy12643 62 EPESSCPICLKLFLVGESAKKL--DCKHTFHSTCILPWL-------EKTSTCPLCRHEF 111 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~--~C~h~f~~~Ci~~~~-------~~~~~CP~Cr~~~ 111 (144)
..+..|.||..........+++ .|...||..|+..-+ ...-.|+.|....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 3467899998764222233333 599999999986422 1233588886543
No 95
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=69.82 E-value=0.94 Score=32.09 Aligned_cols=45 Identities=29% Similarity=0.545 Sum_probs=29.9
Q ss_pred cccccccccccccCCCceeec-CCCCcchHhhHHHHhhC----CCCcccccccc
Q psy12643 63 PESSCPICLKLFLVGESAKKL-DCKHTFHSTCILPWLEK----TSTCPLCRHEF 111 (144)
Q Consensus 63 ~~~~C~IC~~~~~~~~~~~~~-~C~h~f~~~Ci~~~~~~----~~~CP~Cr~~~ 111 (144)
.+..|.+|... ...+.- .|...||..|+.+-+.. .-.||.|+..-
T Consensus 6 ~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 46779999643 222222 58999999998654442 23599998754
No 96
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=69.11 E-value=4.9 Score=31.19 Aligned_cols=57 Identities=21% Similarity=0.425 Sum_probs=37.2
Q ss_pred ccccccccccccCCCceee-cCCCCcchHh--hHHHHhh--CCCCccccccccCCCChhHHHHHH
Q psy12643 64 ESSCPICLKLFLVGESAKK-LDCKHTFHST--CILPWLE--KTSTCPLCRHEFKTDDADYEAYKV 123 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~-~~C~h~f~~~--Ci~~~~~--~~~~CP~Cr~~~~~~~~~~~~~~~ 123 (144)
...|+|-...+ ..+.. ..|.|.-|.+ -+..+.. ..-.||+|.+.+...++.+-.+..
T Consensus 249 SL~CPlS~~ri---~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~ 310 (371)
T 3i2d_A 249 SLQCPISYTRM---KYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVD 310 (371)
T ss_dssp ESBCTTTSSBC---SSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHH
T ss_pred eecCCCccccc---cccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHH
Confidence 67798887777 55544 4699984443 3333333 334699999998877776554444
No 97
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.51 E-value=0.59 Score=26.01 Aligned_cols=44 Identities=30% Similarity=0.655 Sum_probs=26.9
Q ss_pred CcccccccccccccCCCceeecCCCCcchHhhHHHHhhCC----CCccccc
Q psy12643 62 EPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKT----STCPLCR 108 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~----~~CP~Cr 108 (144)
..+..|.+|... +.-..--.|...||..|+..-+... -.||.|.
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp SSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 346789999764 1222222588999999987533321 2477764
No 98
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=66.92 E-value=0.73 Score=26.58 Aligned_cols=46 Identities=28% Similarity=0.538 Sum_probs=28.7
Q ss_pred CcccccccccccccCCCceeecCCCCcchHhhHHHHhhC----CCCccccccc
Q psy12643 62 EPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEK----TSTCPLCRHE 110 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~----~~~CP~Cr~~ 110 (144)
..+..|.||...- .-..--.|...||..|+..-+.. .-.||.|...
T Consensus 6 ~~~~~C~vC~~~g---~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDGG---ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCCS---SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCCC---CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 3577899997531 22222258889999998743332 2248888653
No 99
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=66.89 E-value=1.5 Score=29.98 Aligned_cols=48 Identities=19% Similarity=0.394 Sum_probs=30.1
Q ss_pred CcccccccccccccCCCceeec-CCCCcchHhhHHHH--h---hCCCCccccccc
Q psy12643 62 EPESSCPICLKLFLVGESAKKL-DCKHTFHSTCILPW--L---EKTSTCPLCRHE 110 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~-~C~h~f~~~Ci~~~--~---~~~~~CP~Cr~~ 110 (144)
.+...| +|......+...+.- .|..+||..|+.-. . .....||.|+..
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 346678 998775322333333 58999999998421 1 134579999763
No 100
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=66.74 E-value=0.65 Score=30.32 Aligned_cols=47 Identities=32% Similarity=0.515 Sum_probs=29.3
Q ss_pred ccccccccccccCCCc-eeecCCCCcchHhhHHHHhhCCCCccccccc
Q psy12643 64 ESSCPICLKLFLVGES-AKKLDCKHTFHSTCILPWLEKTSTCPLCRHE 110 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~-~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~ 110 (144)
...|..|...|..-.. ..--.||..||..|........+.|-.|-..
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence 5689999988842211 1223799999999976554456778888543
No 101
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=66.07 E-value=4.6 Score=23.41 Aligned_cols=33 Identities=15% Similarity=0.303 Sum_probs=24.7
Q ss_pred CCcccccccccccccCCCceeecCC-CCcchHhhHHHH
Q psy12643 61 HEPESSCPICLKLFLVGESAKKLDC-KHTFHSTCILPW 97 (144)
Q Consensus 61 ~~~~~~C~IC~~~~~~~~~~~~~~C-~h~f~~~Ci~~~ 97 (144)
.++..-|.||.+. ....-+.| +-.||..|+.+.
T Consensus 5 ~ee~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 5 SSGLPWCCICNED----ATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCCCSSCTTTCSC----CCEEETTTTSEEECSSHHHHH
T ss_pred CcCCCeeEEeCCC----CeEEecCCCCceehHHHHHHH
Confidence 3446679999877 34566788 789999998765
No 102
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=65.14 E-value=3.7 Score=25.20 Aligned_cols=46 Identities=28% Similarity=0.612 Sum_probs=30.2
Q ss_pred CcccccccccccccCCCceeecCCCCcchHhhHHHHhhCC----CCccccccc
Q psy12643 62 EPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKT----STCPLCRHE 110 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~----~~CP~Cr~~ 110 (144)
..+..|.+|...- .-..--.|...||..|+.+-+... -.||.|+..
T Consensus 23 ~n~~~C~vC~~~g---~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKPG---DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSSS---CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCCC---CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 4477899997542 221222588999999987655422 259999864
No 103
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=64.70 E-value=2.5 Score=26.72 Aligned_cols=38 Identities=13% Similarity=0.277 Sum_probs=24.4
Q ss_pred CcccccccccccccCCCceeecCCCCcchHhhHHHHhh
Q psy12643 62 EPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLE 99 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~ 99 (144)
..+..|.||...-+...-..-..|...||..|+...+.
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence 45788999976531111122236999999999875543
No 104
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=63.91 E-value=6.5 Score=22.91 Aligned_cols=49 Identities=16% Similarity=0.312 Sum_probs=29.0
Q ss_pred CCcccccccccccccCCCceeec--CCCCcchHhhHHHHhh--CCCCcccccc
Q psy12643 61 HEPESSCPICLKLFLVGESAKKL--DCKHTFHSTCILPWLE--KTSTCPLCRH 109 (144)
Q Consensus 61 ~~~~~~C~IC~~~~~~~~~~~~~--~C~h~f~~~Ci~~~~~--~~~~CP~Cr~ 109 (144)
...+..|.||...-.......++ .|.-.||..|+..-.. ..-.|+.|+.
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 34578899997653111222232 5889999999864221 2224777753
No 105
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=63.72 E-value=0.92 Score=25.54 Aligned_cols=44 Identities=30% Similarity=0.664 Sum_probs=27.1
Q ss_pred cccccccccccccCCCceeecCCCCcchHhhHHHHhhC----CCCcccccc
Q psy12643 63 PESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEK----TSTCPLCRH 109 (144)
Q Consensus 63 ~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~----~~~CP~Cr~ 109 (144)
.+..|.+|... +.-..--.|...||..|+..-+.. .-.||.|..
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 46789999753 122222258999999998753332 224777743
No 106
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=62.91 E-value=6.2 Score=23.65 Aligned_cols=35 Identities=17% Similarity=0.306 Sum_probs=23.7
Q ss_pred CcccccccccccccCCCce-eecCCCCcchHhhHHH
Q psy12643 62 EPESSCPICLKLFLVGESA-KKLDCKHTFHSTCILP 96 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~-~~~~C~h~f~~~Ci~~ 96 (144)
.+...|.+|...|..-... ---.||..||..|...
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 3456799999988432221 2236999999999643
No 107
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=62.13 E-value=5 Score=26.07 Aligned_cols=32 Identities=25% Similarity=0.424 Sum_probs=22.2
Q ss_pred ccccccccccccCCCce-eecCCCCcchHhhHH
Q psy12643 64 ESSCPICLKLFLVGESA-KKLDCKHTFHSTCIL 95 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~-~~~~C~h~f~~~Ci~ 95 (144)
...|.+|...|...... ---.||.+||..|..
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~ 101 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSA 101 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhC
Confidence 45799999988432221 223699999999954
No 108
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=61.50 E-value=4.6 Score=25.45 Aligned_cols=49 Identities=22% Similarity=0.362 Sum_probs=32.2
Q ss_pred ccccccccccccCCCceeec--CCCCcchHhhHHHH------h----hCCCCccccccccC
Q psy12643 64 ESSCPICLKLFLVGESAKKL--DCKHTFHSTCILPW------L----EKTSTCPLCRHEFK 112 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~--~C~h~f~~~Ci~~~------~----~~~~~CP~Cr~~~~ 112 (144)
...|.||...+......+.- .|...||..|+.-- + .....||.|+....
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 45799999887543344443 58899999997311 1 03346999987543
No 109
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=60.24 E-value=25 Score=21.58 Aligned_cols=51 Identities=20% Similarity=0.365 Sum_probs=34.0
Q ss_pred cccccccccccccCCC--ceeec--CCCCcchHhhHHHHhh-CCCCccccccccCC
Q psy12643 63 PESSCPICLKLFLVGE--SAKKL--DCKHTFHSTCILPWLE-KTSTCPLCRHEFKT 113 (144)
Q Consensus 63 ~~~~C~IC~~~~~~~~--~~~~~--~C~h~f~~~Ci~~~~~-~~~~CP~Cr~~~~~ 113 (144)
....|.||-+...... .+.+. -|+-..|..|+.--.+ ....||-|+..+..
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 4578999988753222 11111 4777789999864444 66789999998853
No 110
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=60.12 E-value=6.1 Score=22.99 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=21.8
Q ss_pred ccccccccccccCCCc-eeecCCCCcchHhhHH
Q psy12643 64 ESSCPICLKLFLVGES-AKKLDCKHTFHSTCIL 95 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~-~~~~~C~h~f~~~Ci~ 95 (144)
+..|.+|...|..-.. .---.||.+||..|..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 3589999988843221 1123699999999954
No 111
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=59.82 E-value=6.3 Score=23.50 Aligned_cols=34 Identities=26% Similarity=0.552 Sum_probs=23.0
Q ss_pred cccccccccccccCCCce-eecCCCCcchHhhHHH
Q psy12643 63 PESSCPICLKLFLVGESA-KKLDCKHTFHSTCILP 96 (144)
Q Consensus 63 ~~~~C~IC~~~~~~~~~~-~~~~C~h~f~~~Ci~~ 96 (144)
+...|.+|...|...... ---.||.+||..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 356799999988432211 1236999999999643
No 112
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.78 E-value=0.77 Score=28.42 Aligned_cols=46 Identities=24% Similarity=0.495 Sum_probs=28.0
Q ss_pred cccccccccccccCCCceeec-CCCCcchHhhHHHHhhC----CCCcccccc
Q psy12643 63 PESSCPICLKLFLVGESAKKL-DCKHTFHSTCILPWLEK----TSTCPLCRH 109 (144)
Q Consensus 63 ~~~~C~IC~~~~~~~~~~~~~-~C~h~f~~~Ci~~~~~~----~~~CP~Cr~ 109 (144)
+...|.||...-.. ...+.- .|...||..|+..-+.. .-.||.|..
T Consensus 15 ~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 15 DSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 36679999765311 112222 58899999998643332 224888864
No 113
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=59.67 E-value=7.9 Score=25.54 Aligned_cols=34 Identities=21% Similarity=0.419 Sum_probs=23.6
Q ss_pred CcccccccccccccC--CCceeecCCCCcchHhhHH
Q psy12643 62 EPESSCPICLKLFLV--GESAKKLDCKHTFHSTCIL 95 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~--~~~~~~~~C~h~f~~~Ci~ 95 (144)
.....|.+|...+.. +.......|.|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 457889999998732 2233444799999988853
No 114
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=59.26 E-value=3.1 Score=26.44 Aligned_cols=44 Identities=25% Similarity=0.535 Sum_probs=25.9
Q ss_pred ccccccccccCCCceeec-CCCCcchHhhHHHHhhC----CCCcccccc
Q psy12643 66 SCPICLKLFLVGESAKKL-DCKHTFHSTCILPWLEK----TSTCPLCRH 109 (144)
Q Consensus 66 ~C~IC~~~~~~~~~~~~~-~C~h~f~~~Ci~~~~~~----~~~CP~Cr~ 109 (144)
.|.||...-......+.- .|...||..|+.+-+.. .-.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 577886532111122222 58999999998654442 225888874
No 115
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=59.11 E-value=2.3 Score=29.69 Aligned_cols=44 Identities=30% Similarity=0.615 Sum_probs=28.0
Q ss_pred ccccccccccccCCCceeecCCCCcchHhhHHHHhhC----CCCccccccc
Q psy12643 64 ESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEK----TSTCPLCRHE 110 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~----~~~CP~Cr~~ 110 (144)
+..|.+|...- .-...-.|...||..|+.+-+.. .-.||.|+..
T Consensus 2 ~~~C~~C~~~g---~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKPG---DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCCS---SCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCCC---ceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 45799997442 22222258889999998654432 2259999864
No 116
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=57.71 E-value=7.5 Score=23.59 Aligned_cols=34 Identities=24% Similarity=0.412 Sum_probs=23.0
Q ss_pred CcccccccccccccCCCce-eecCCCCcchHhhHH
Q psy12643 62 EPESSCPICLKLFLVGESA-KKLDCKHTFHSTCIL 95 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~-~~~~C~h~f~~~Ci~ 95 (144)
.+...|.+|...|..-... ---.||.+||..|..
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 41 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLS 41 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSC
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcC
Confidence 3456899999988432211 123699999999964
No 117
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=57.35 E-value=9.1 Score=22.24 Aligned_cols=43 Identities=26% Similarity=0.555 Sum_probs=26.7
Q ss_pred ccccccccccccCCCceeec--C--CC-CcchHhhHHHHhh----CCCCccccccccC
Q psy12643 64 ESSCPICLKLFLVGESAKKL--D--CK-HTFHSTCILPWLE----KTSTCPLCRHEFK 112 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~--~--C~-h~f~~~Ci~~~~~----~~~~CP~Cr~~~~ 112 (144)
...| ||.... ...++. . |. ..||..|+. +. ..-.||.|+..-.
T Consensus 16 ~~~C-~C~~~~---~g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 16 PTYC-LCHQVS---YGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp CCCS-TTCCCS---CSSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred CCEE-ECCCCC---CCCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 5567 898754 222222 3 65 699999986 22 2336999976543
No 118
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.36 E-value=8 Score=23.12 Aligned_cols=33 Identities=24% Similarity=0.429 Sum_probs=22.3
Q ss_pred cccccccccccccCCCce-eecCCCCcchHhhHH
Q psy12643 63 PESSCPICLKLFLVGESA-KKLDCKHTFHSTCIL 95 (144)
Q Consensus 63 ~~~~C~IC~~~~~~~~~~-~~~~C~h~f~~~Ci~ 95 (144)
+...|.+|...|..-... ---.||.+||..|..
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 356799999988432211 123699999999954
No 119
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=56.29 E-value=7.9 Score=23.79 Aligned_cols=45 Identities=22% Similarity=0.458 Sum_probs=26.5
Q ss_pred ccccccccccccCCCceeec--C--CC-CcchHhhHHHHhh--CCCCccccccccC
Q psy12643 64 ESSCPICLKLFLVGESAKKL--D--CK-HTFHSTCILPWLE--KTSTCPLCRHEFK 112 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~--~--C~-h~f~~~Ci~~~~~--~~~~CP~Cr~~~~ 112 (144)
...| ||.... ...++. . |. ..||..|+.--.. ..-.||.|+..-.
T Consensus 36 ~~yC-iC~~~~---~g~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 36 PTYC-LCHQVS---YGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CBCS-TTCCBC---CSCCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCCCS
T ss_pred CcEE-ECCCCC---CCCEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCcCC
Confidence 4557 998764 222221 3 55 6899999861111 2346999986543
No 120
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=55.88 E-value=6.3 Score=26.63 Aligned_cols=46 Identities=20% Similarity=0.415 Sum_probs=29.3
Q ss_pred cccccccccccccCC--CceeecCCCCcchHhhHHHHhhC--CCCcccccc
Q psy12643 63 PESSCPICLKLFLVG--ESAKKLDCKHTFHSTCILPWLEK--TSTCPLCRH 109 (144)
Q Consensus 63 ~~~~C~IC~~~~~~~--~~~~~~~C~h~f~~~Ci~~~~~~--~~~CP~Cr~ 109 (144)
....|.+|...|..- .......|.|.+|..|-. |... .-.|-+|.+
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHH
Confidence 578899999976322 333445799999999952 2221 123777755
No 121
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=55.84 E-value=9 Score=23.28 Aligned_cols=33 Identities=18% Similarity=0.380 Sum_probs=22.7
Q ss_pred ccccccccccccCCCc-eeecCCCCcchHhhHHH
Q psy12643 64 ESSCPICLKLFLVGES-AKKLDCKHTFHSTCILP 96 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~-~~~~~C~h~f~~~Ci~~ 96 (144)
...|.+|...|..... ..-..||.+||..|...
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 5679999988843221 12236999999999653
No 122
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=55.46 E-value=5.8 Score=28.14 Aligned_cols=32 Identities=19% Similarity=0.428 Sum_probs=22.5
Q ss_pred ccccccccccccCCCce-eecCCCCcchHhhHH
Q psy12643 64 ESSCPICLKLFLVGESA-KKLDCKHTFHSTCIL 95 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~-~~~~C~h~f~~~Ci~ 95 (144)
+..|.+|...|...... -.-.||..||..|..
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~ 193 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTA 193 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSC
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhC
Confidence 57899999988432222 223699999999954
No 123
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=55.23 E-value=1.9 Score=25.14 Aligned_cols=48 Identities=21% Similarity=0.163 Sum_probs=29.3
Q ss_pred cccccccccccccCCCceeec-CCCCcchHhhHHHHh----hCCCCcccccccc
Q psy12643 63 PESSCPICLKLFLVGESAKKL-DCKHTFHSTCILPWL----EKTSTCPLCRHEF 111 (144)
Q Consensus 63 ~~~~C~IC~~~~~~~~~~~~~-~C~h~f~~~Ci~~~~----~~~~~CP~Cr~~~ 111 (144)
....| ||......+...+.- .|...||..|+.--. .....||.|+...
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 35668 798765333233333 589999999975321 1344699997643
No 124
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=54.45 E-value=17 Score=24.26 Aligned_cols=45 Identities=22% Similarity=0.413 Sum_probs=30.4
Q ss_pred CCcccccccccccccCCCceeec-CCCCcchHhhHHHHhh-----------CCCCcccccc
Q psy12643 61 HEPESSCPICLKLFLVGESAKKL-DCKHTFHSTCILPWLE-----------KTSTCPLCRH 109 (144)
Q Consensus 61 ~~~~~~C~IC~~~~~~~~~~~~~-~C~h~f~~~Ci~~~~~-----------~~~~CP~Cr~ 109 (144)
...+..|.+|.+.- ....- .|...||..||.+-+. ..-.|+.|+.
T Consensus 60 Dg~~d~C~vC~~GG----~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEGG----NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCCS----SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCCC----cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 34478899997542 22222 6899999999986542 2225999974
No 125
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=53.61 E-value=2.8 Score=24.25 Aligned_cols=46 Identities=24% Similarity=0.578 Sum_probs=27.8
Q ss_pred CcccccccccccccCCCceeec-CCCCcchHhhHHHHhh---CCCCcccccc
Q psy12643 62 EPESSCPICLKLFLVGESAKKL-DCKHTFHSTCILPWLE---KTSTCPLCRH 109 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~-~C~h~f~~~Ci~~~~~---~~~~CP~Cr~ 109 (144)
.+...| ||..... +...+.- .|...||..|+.--.. ....||.|+.
T Consensus 17 ~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 345667 9987652 2223332 5899999999753221 3346888864
No 126
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=53.06 E-value=6.6 Score=28.11 Aligned_cols=32 Identities=22% Similarity=0.375 Sum_probs=22.7
Q ss_pred ccccccccccccCCCc-eeecCCCCcchHhhHH
Q psy12643 64 ESSCPICLKLFLVGES-AKKLDCKHTFHSTCIL 95 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~-~~~~~C~h~f~~~Ci~ 95 (144)
+..|.+|...|..-.. ...-.||..||..|..
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~ 196 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSS 196 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCC
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcC
Confidence 5689999988853222 2223699999999964
No 127
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=52.93 E-value=4 Score=20.43 Aligned_cols=11 Identities=36% Similarity=0.884 Sum_probs=5.6
Q ss_pred ccccccccccc
Q psy12643 64 ESSCPICLKLF 74 (144)
Q Consensus 64 ~~~C~IC~~~~ 74 (144)
.+.|+||+..+
T Consensus 5 GFiCP~C~~~l 15 (34)
T 3mjh_B 5 GFICPQCMKSL 15 (34)
T ss_dssp EEECTTTCCEE
T ss_pred ccCCcHHHHHc
Confidence 34555555444
No 128
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=50.86 E-value=2.5 Score=25.20 Aligned_cols=42 Identities=29% Similarity=0.653 Sum_probs=24.4
Q ss_pred ccccccccccCCCceeec--CCCCcchHhhHHHHhhC----C-CCcccccc
Q psy12643 66 SCPICLKLFLVGESAKKL--DCKHTFHSTCILPWLEK----T-STCPLCRH 109 (144)
Q Consensus 66 ~C~IC~~~~~~~~~~~~~--~C~h~f~~~Ci~~~~~~----~-~~CP~Cr~ 109 (144)
.|.+|...-. ....++ .|...||..|+..-+.. . =.||.|+.
T Consensus 28 ~C~vC~~~~d--~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQD--PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSC--GGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCC--CcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 4667755431 112222 58899999998754442 1 35888864
No 129
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=50.63 E-value=6 Score=24.02 Aligned_cols=48 Identities=17% Similarity=0.524 Sum_probs=30.3
Q ss_pred ccccccccccccCCCceeec--CCCCcchHhhHHHHhh--------CCCCcccccccc
Q psy12643 64 ESSCPICLKLFLVGESAKKL--DCKHTFHSTCILPWLE--------KTSTCPLCRHEF 111 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~--~C~h~f~~~Ci~~~~~--------~~~~CP~Cr~~~ 111 (144)
+..|.+|...-......+++ .|...||..|+..-+. ..-.|+.|+...
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchh
Confidence 67899998763221223333 5999999999865332 223588886544
No 130
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=50.00 E-value=6.3 Score=23.27 Aligned_cols=47 Identities=19% Similarity=0.388 Sum_probs=28.3
Q ss_pred cccccccccccccCCCceeec---CCCCcchHhhHHHHhh---------CCCCcccccccc
Q psy12643 63 PESSCPICLKLFLVGESAKKL---DCKHTFHSTCILPWLE---------KTSTCPLCRHEF 111 (144)
Q Consensus 63 ~~~~C~IC~~~~~~~~~~~~~---~C~h~f~~~Ci~~~~~---------~~~~CP~Cr~~~ 111 (144)
....| ||......+ ..+.- .|...||..|+.--.. ....||.|+..-
T Consensus 15 ~~~~C-iC~~~~~~g-~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSLETD-SMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCCCCS-CEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCEEe-ECCCcCCCC-CEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 35667 798763222 22222 5889999999842111 245699997644
No 131
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=47.32 E-value=13 Score=23.57 Aligned_cols=53 Identities=8% Similarity=-0.028 Sum_probs=34.8
Q ss_pred cccccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccCCCC
Q psy12643 63 PESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTDD 115 (144)
Q Consensus 63 ~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 115 (144)
+-+.|..|...+..........-+..||..|..+.+.....|..|...|....
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~ 83 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGD 83 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCEE
T ss_pred hCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCchh
Confidence 35778888877731001122235677899998776665558999999887543
No 132
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.95 E-value=2.8 Score=25.16 Aligned_cols=40 Identities=13% Similarity=0.396 Sum_probs=25.6
Q ss_pred cccccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccCC
Q psy12643 63 PESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKT 113 (144)
Q Consensus 63 ~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 113 (144)
....|..|.+.+. ...+..-+..||..|+ .|..|+..|..
T Consensus 24 ~~~~C~~C~~~I~---~~~v~a~~~~~H~~CF--------~C~~C~~~L~~ 63 (90)
T 2dar_A 24 RTPMCAHCNQVIR---GPFLVALGKSWHPEEF--------NCAHCKNTMAY 63 (90)
T ss_dssp CCCBBSSSCCBCC---SCEEEETTEEECTTTC--------BCSSSCCBCSS
T ss_pred CCCCCccCCCEec---ceEEEECCccccccCC--------ccCCCCCCCCC
Confidence 3567888887762 2233345667777764 47788877764
No 133
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.92 E-value=9.9 Score=22.00 Aligned_cols=39 Identities=18% Similarity=0.307 Sum_probs=25.9
Q ss_pred cccccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccC
Q psy12643 63 PESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFK 112 (144)
Q Consensus 63 ~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~ 112 (144)
....|..|.+.+. ...+..-+..||..|+ .|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~---~~~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIV---GVFVKLRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCC---SSCEECSSCEECTTTT--------SCSSSCCCHH
T ss_pred CCCccccCCCCcc---CcEEEECcceeCcCcC--------eeCCCCCCCC
Confidence 3567999988763 2234445677888774 4778877664
No 134
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.92 E-value=5 Score=23.83 Aligned_cols=44 Identities=27% Similarity=0.587 Sum_probs=26.3
Q ss_pred cccccccccccCCCceeec-CCCCcchHhhHHHHhhC-----CCCcccccc
Q psy12643 65 SSCPICLKLFLVGESAKKL-DCKHTFHSTCILPWLEK-----TSTCPLCRH 109 (144)
Q Consensus 65 ~~C~IC~~~~~~~~~~~~~-~C~h~f~~~Ci~~~~~~-----~~~CP~Cr~ 109 (144)
..|.||...-.. ...+.- .|...||..|+.+-+.. .=.||.|..
T Consensus 27 c~C~vC~~~~~~-~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEP-NMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCS-TTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCC-CCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 367888754311 222222 58999999998753331 225888853
No 135
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=43.49 E-value=17 Score=23.00 Aligned_cols=52 Identities=13% Similarity=0.179 Sum_probs=28.9
Q ss_pred CcccccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccCC
Q psy12643 62 EPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKT 113 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 113 (144)
.+-+.|..|...+..........=+..||..|..+.+.....|..|...+..
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRA 78 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECT
T ss_pred HHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCc
Confidence 3456777777666321111222345667777766554433367777776654
No 136
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=43.43 E-value=5 Score=31.14 Aligned_cols=48 Identities=17% Similarity=0.186 Sum_probs=0.0
Q ss_pred cccccccccccccCCCc-eeecCCCCcchHhhHHHHhh-------CCCCccccccc
Q psy12643 63 PESSCPICLKLFLVGES-AKKLDCKHTFHSTCILPWLE-------KTSTCPLCRHE 110 (144)
Q Consensus 63 ~~~~C~IC~~~~~~~~~-~~~~~C~h~f~~~Ci~~~~~-------~~~~CP~Cr~~ 110 (144)
+...|.+|...|..... .....||+.||..|...... ..+.|-.|-..
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~ 429 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGE 429 (434)
T ss_dssp --------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHH
Confidence 35679999988742211 12236999999999865432 23356666443
No 137
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=42.72 E-value=10 Score=20.92 Aligned_cols=39 Identities=15% Similarity=0.336 Sum_probs=24.3
Q ss_pred ccccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccCC
Q psy12643 64 ESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKT 113 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 113 (144)
...|..|...+. ...+..-+..||..|+ .|..|+.++..
T Consensus 5 ~~~C~~C~~~I~---~~~~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIE---GRVVNAMGKQWHVEHF--------VCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECC---SCEECCTTSBEETTTC--------BCTTTCCBCSS
T ss_pred CCCCcccCCEec---ceEEEECccccccCcC--------EECCCCCCCCC
Confidence 356788877763 2233345667777763 47788777754
No 138
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=42.64 E-value=6.6 Score=21.99 Aligned_cols=40 Identities=25% Similarity=0.599 Sum_probs=23.9
Q ss_pred ccccccccccccCCCceeec--C--CC-CcchHhhHHHHhh----CCCCcccccc
Q psy12643 64 ESSCPICLKLFLVGESAKKL--D--CK-HTFHSTCILPWLE----KTSTCPLCRH 109 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~--~--C~-h~f~~~Ci~~~~~----~~~~CP~Cr~ 109 (144)
...| ||.... ...++. . |. ..||..|+. +. ..-.||.|+.
T Consensus 10 ~~~C-~C~~~~---~g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVS---YGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEEC---CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcC---CCCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 4556 898764 222222 3 55 689999986 32 2335888854
No 139
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=42.43 E-value=5.4 Score=23.13 Aligned_cols=43 Identities=28% Similarity=0.591 Sum_probs=24.9
Q ss_pred ccccccccccCCCceeec-CCCCcchHhhHHHHhhC-----CCCcccccc
Q psy12643 66 SCPICLKLFLVGESAKKL-DCKHTFHSTCILPWLEK-----TSTCPLCRH 109 (144)
Q Consensus 66 ~C~IC~~~~~~~~~~~~~-~C~h~f~~~Ci~~~~~~-----~~~CP~Cr~ 109 (144)
.|.||...-.. ...+.- .|...||..|+..-+.. .=.||.|+.
T Consensus 20 ~C~~C~~~~~~-~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCC-CCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 46677643211 122222 58899999998754431 225888864
No 140
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.26 E-value=12 Score=20.98 Aligned_cols=41 Identities=27% Similarity=0.566 Sum_probs=23.4
Q ss_pred ccccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccCC
Q psy12643 64 ESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKT 113 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 113 (144)
...|..|...+..+ ...+..-+..||..|+ .|..|..+|..
T Consensus 5 ~~~C~~C~~~I~~~-~~~~~a~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPG-SRKLEYGGQTWHEHCF--------LCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSS-SCEECSTTCCEETTTC--------BCTTTCCBTTT
T ss_pred CCCCccCCCccccC-ccEEEECccccCcccC--------eECCCCCcCCC
Confidence 34677777766321 1233334666777663 47777776654
No 141
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=42.14 E-value=6.5 Score=28.39 Aligned_cols=45 Identities=27% Similarity=0.533 Sum_probs=24.7
Q ss_pred ccccccccccccCCCceee-cCCCCcchHhhHHHHhhC-----CCCcccccc
Q psy12643 64 ESSCPICLKLFLVGESAKK-LDCKHTFHSTCILPWLEK-----TSTCPLCRH 109 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~-~~C~h~f~~~Ci~~~~~~-----~~~CP~Cr~ 109 (144)
...|.+|...-.. ..... -.|...||..|+.+-+.. .=.||.|+.
T Consensus 174 ~c~C~vC~~~~~~-~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 174 VCACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TTSCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCCcCCCCCCCC-CCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 3368888754211 12222 258999999999854431 225999964
No 142
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=42.03 E-value=7.2 Score=21.79 Aligned_cols=40 Identities=25% Similarity=0.581 Sum_probs=24.2
Q ss_pred ccccccccccccCCCceeec--C--CC-CcchHhhHHHHhh----CCCCcccccc
Q psy12643 64 ESSCPICLKLFLVGESAKKL--D--CK-HTFHSTCILPWLE----KTSTCPLCRH 109 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~--~--C~-h~f~~~Ci~~~~~----~~~~CP~Cr~ 109 (144)
...| ||.... ...++. . |. ..||..|+. +. ..-.||.|+.
T Consensus 9 ~~yC-~C~~~~---~g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVS---YGEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEEC---CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEE-ECCCCC---CCCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 4556 898764 222222 4 65 699999986 22 2335888854
No 143
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.03 E-value=12 Score=20.90 Aligned_cols=37 Identities=24% Similarity=0.621 Sum_probs=19.0
Q ss_pred cccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccC
Q psy12643 65 SSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFK 112 (144)
Q Consensus 65 ~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~ 112 (144)
..|..|.+.+. ...+..-+..||..|+ .|..|+.+|.
T Consensus 6 ~~C~~C~~~I~---~~~~~a~~~~~H~~CF--------~C~~C~~~L~ 42 (70)
T 2d8z_A 6 SGCVQCKKPIT---TGGVTYREQPWHKECF--------VCTACRKQLS 42 (70)
T ss_dssp CBCSSSCCBCC---SSEEESSSSEEETTTS--------BCSSSCCBCT
T ss_pred CCCcccCCeec---cceEEECccccCCCCC--------ccCCCCCcCC
Confidence 45666666552 1122334556666553 3666666654
No 144
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=40.63 E-value=6.2 Score=25.00 Aligned_cols=29 Identities=28% Similarity=0.615 Sum_probs=17.9
Q ss_pred ceeecCCCCcchHhhHHHHhhCCCCccccccccC
Q psy12643 79 SAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFK 112 (144)
Q Consensus 79 ~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~ 112 (144)
......||+.|. .-+.....||.|+....
T Consensus 67 p~~C~~CG~~F~-----~~~~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 67 PAQCRKCGFVFK-----AEINIPSRCPKCKSEWI 95 (105)
T ss_dssp CCBBTTTCCBCC-----CCSSCCSSCSSSCCCCB
T ss_pred CcChhhCcCeec-----ccCCCCCCCcCCCCCcc
Confidence 344457888882 11234567999987543
No 145
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.12 E-value=18 Score=20.92 Aligned_cols=40 Identities=18% Similarity=0.438 Sum_probs=23.9
Q ss_pred ccccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccCCC
Q psy12643 64 ESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTD 114 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 114 (144)
...|.-|...+. ...+..-+..||..|+ .|..|+.+|...
T Consensus 15 ~~~C~~C~~~I~---~~~v~a~~~~~H~~CF--------~C~~C~~~L~~~ 54 (79)
T 2cor_A 15 KYICQKCHAIID---EQPLIFKNDPYHPDHF--------NCANCGKELTAD 54 (79)
T ss_dssp CCBCTTTCCBCC---SCCCCCSSSCCCTTTS--------BCSSSCCBCCTT
T ss_pred CCCCccCCCEec---ceEEEECcceeCCCCC--------EeCCCCCccCCC
Confidence 456888877663 2223334566776663 477777776643
No 146
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=38.45 E-value=1.9 Score=27.56 Aligned_cols=44 Identities=25% Similarity=0.477 Sum_probs=24.9
Q ss_pred ccccccccccCCCceeecCCCCcchHhhHHHHhhC----CCCcccccc
Q psy12643 66 SCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEK----TSTCPLCRH 109 (144)
Q Consensus 66 ~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~----~~~CP~Cr~ 109 (144)
.|.||...-..+.-..--.|...||..|+..-+.. .-.||.|+.
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 107 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWE 107 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHH
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccc
Confidence 57788664321111111258999999998753332 124777754
No 147
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=38.40 E-value=13 Score=22.07 Aligned_cols=40 Identities=20% Similarity=0.372 Sum_probs=27.4
Q ss_pred ccccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccCCC
Q psy12643 64 ESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTD 114 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 114 (144)
...|..|.+.+. ...+..-+..||..|+ .|-.|...|...
T Consensus 25 ~~~C~~C~~~I~---~~~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 64 (89)
T 1x64_A 25 MPLCDKCGSGIV---GAVVKARDKYRHPECF--------VCADCNLNLKQK 64 (89)
T ss_dssp CCBCTTTCCBCC---SCCEESSSCEECTTTC--------CCSSSCCCTTTS
T ss_pred CCCcccCCCEec---ccEEEECCceECccCC--------EecCCCCCCCCC
Confidence 567999988773 2233345678888774 488888877653
No 148
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=37.76 E-value=34 Score=19.68 Aligned_cols=46 Identities=22% Similarity=0.358 Sum_probs=28.8
Q ss_pred ccccccccccccCCCceeec-CCCCcchHhhHHHH---------hhCCCCcccccccc
Q psy12643 64 ESSCPICLKLFLVGESAKKL-DCKHTFHSTCILPW---------LEKTSTCPLCRHEF 111 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~-~C~h~f~~~Ci~~~---------~~~~~~CP~Cr~~~ 111 (144)
...| ||..... +...+.- .|...||..|+.-- ......||.|+..-
T Consensus 16 ~~~C-~C~~~~~-~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 16 ALYC-ICRQPHN-NRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCCS-TTCCCCC-SSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCEE-ECCCccC-CCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 4556 8987653 1222222 58999999998311 12466799997644
No 149
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=37.55 E-value=33 Score=21.60 Aligned_cols=45 Identities=22% Similarity=0.422 Sum_probs=27.3
Q ss_pred CCcccccccccccccCCCceeec---CCCCcchHhhHHHHhhCC----CCcccccccc
Q psy12643 61 HEPESSCPICLKLFLVGESAKKL---DCKHTFHSTCILPWLEKT----STCPLCRHEF 111 (144)
Q Consensus 61 ~~~~~~C~IC~~~~~~~~~~~~~---~C~h~f~~~Ci~~~~~~~----~~CP~Cr~~~ 111 (144)
...+..|.+|... ...+.- .|-..||..|+. +... -.||.|...+
T Consensus 12 ~~~~~~C~~C~~~----G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~ 63 (107)
T 4gne_A 12 QMHEDYCFQCGDG----GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDE 63 (107)
T ss_dssp CSSCSSCTTTCCC----SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTT
T ss_pred CCCCCCCCcCCCC----CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCc
Confidence 3457789999732 333332 387899999986 3321 2477665433
No 150
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.55 E-value=8.8 Score=21.53 Aligned_cols=40 Identities=20% Similarity=0.566 Sum_probs=20.6
Q ss_pred ccccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccCCC
Q psy12643 64 ESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTD 114 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 114 (144)
...|..|.+.+. ...+..-+..||..|+ .|-.|+.+|...
T Consensus 5 ~~~C~~C~~~I~---~~~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFII---GRVIKAMNNSWHPECF--------RCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCC---SCCEEETTEEECTTTS--------BCSSSCCBCSSS
T ss_pred CCcCccCCCEec---ceEEEECcccccccCC--------EeCCCCCcCCCC
Confidence 345666666552 1122233455666553 366666666543
No 151
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.74 E-value=13 Score=21.19 Aligned_cols=9 Identities=33% Similarity=0.826 Sum_probs=4.2
Q ss_pred ccccccccc
Q psy12643 66 SCPICLKLF 74 (144)
Q Consensus 66 ~C~IC~~~~ 74 (144)
.|.-|...+
T Consensus 7 ~C~~C~~~I 15 (73)
T 1wig_A 7 GCDSCEKYI 15 (73)
T ss_dssp SCSSSCCCC
T ss_pred CcccCCCEe
Confidence 355554443
No 152
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.86 E-value=15 Score=20.63 Aligned_cols=41 Identities=20% Similarity=0.420 Sum_probs=21.7
Q ss_pred ccccccccccccC-CCceeecCCCCcchHhhHHHHhhCCCCccccccccC
Q psy12643 64 ESSCPICLKLFLV-GESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFK 112 (144)
Q Consensus 64 ~~~C~IC~~~~~~-~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~ 112 (144)
...|..|.+.+.. +....+..-+..||..|+ .|..|+.+|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISFEERQWHNDCF--------NCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEECSSCEECTTTC--------BCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcceEEECCcccCcccC--------EeccCCCcCC
Confidence 3457777666532 011222334566776663 4667766664
No 153
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=35.70 E-value=40 Score=22.00 Aligned_cols=44 Identities=23% Similarity=0.439 Sum_probs=28.4
Q ss_pred CcccccccccccccCCCceee-cCCCCcchHhhHHHHh------h-----CCCCcccccc
Q psy12643 62 EPESSCPICLKLFLVGESAKK-LDCKHTFHSTCILPWL------E-----KTSTCPLCRH 109 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~-~~C~h~f~~~Ci~~~~------~-----~~~~CP~Cr~ 109 (144)
..+..|.+|.+. -.... -.|-..||..||.+-+ . ..=.|+.|+.
T Consensus 55 g~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 55 GMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 346779999654 22222 2588999999998642 1 1226999954
No 154
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=35.01 E-value=12 Score=17.73 Aligned_cols=12 Identities=25% Similarity=0.647 Sum_probs=9.0
Q ss_pred CCccccccccCC
Q psy12643 102 STCPLCRHEFKT 113 (144)
Q Consensus 102 ~~CP~Cr~~~~~ 113 (144)
..||+|+...++
T Consensus 4 ~~CpvCk~q~Pd 15 (28)
T 2jvx_A 4 FCCPKCQYQAPD 15 (28)
T ss_dssp EECTTSSCEESS
T ss_pred ccCccccccCcC
Confidence 358999887765
No 155
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=35.00 E-value=15 Score=23.02 Aligned_cols=11 Identities=36% Similarity=1.050 Sum_probs=10.2
Q ss_pred chHhhHHHHhh
Q psy12643 89 FHSTCILPWLE 99 (144)
Q Consensus 89 f~~~Ci~~~~~ 99 (144)
||..|+..|..
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 156
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=34.58 E-value=15 Score=23.01 Aligned_cols=11 Identities=27% Similarity=0.966 Sum_probs=10.3
Q ss_pred chHhhHHHHhh
Q psy12643 89 FHSTCILPWLE 99 (144)
Q Consensus 89 f~~~Ci~~~~~ 99 (144)
||..|+..|..
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 157
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.88 E-value=19 Score=20.73 Aligned_cols=42 Identities=24% Similarity=0.584 Sum_probs=25.2
Q ss_pred ccccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccCCC
Q psy12643 64 ESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTD 114 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 114 (144)
...|..|.+.+..+. ..+..-+..||..|+ .|-.|+.+|...
T Consensus 15 ~~~C~~C~~~I~~~~-~~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 56 (82)
T 1x63_A 15 SPKCKGCFKAIVAGD-QNVEYKGTVWHKDCF--------TCSNCKQVIGTG 56 (82)
T ss_dssp SCBCSSSCCBCCSSS-CEEECSSCEEETTTC--------CCSSSCCCCTTS
T ss_pred CCcCccCCcccccCc-eEEEECccccccccC--------chhhCCCccCCC
Confidence 356888877763222 223344667777764 477887777543
No 158
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=32.62 E-value=51 Score=20.57 Aligned_cols=50 Identities=12% Similarity=0.279 Sum_probs=32.7
Q ss_pred CCcccccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccCCC
Q psy12643 61 HEPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTD 114 (144)
Q Consensus 61 ~~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 114 (144)
..+-+.|..|...+. .......-+..||..|.... ....|..|.+++...
T Consensus 27 H~~CF~C~~C~~~L~--~~~f~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~~~ 76 (126)
T 2xqn_T 27 HLKHFCCFDCDSILA--GEIYVMVNDKPVCKPCYVKN--HAVVCQGCHNAIDPE 76 (126)
T ss_dssp CGGGSBCTTTCCBCT--TSEEEEETTEEEEHHHHHHH--SCCBCTTTCSBCCTT
T ss_pred cCCCCCcCCCCCCCC--cCEEEeECCEEechHHhCcC--cCccCcccCCcCCcC
Confidence 344678888887773 12222345667888886543 567799999888753
No 159
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.46 E-value=13 Score=21.54 Aligned_cols=38 Identities=24% Similarity=0.609 Sum_probs=22.7
Q ss_pred cccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccCC
Q psy12643 65 SSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKT 113 (144)
Q Consensus 65 ~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 113 (144)
..|..|.+.+. ...+..-+..||..|+ .|-.|+.+|..
T Consensus 16 ~~C~~C~~~I~---~~~v~a~~~~wH~~CF--------~C~~C~~~L~~ 53 (81)
T 1v6g_A 16 TRCFSCDQFIE---GEVVSALGKTYHPDCF--------VCAVCRLPFPP 53 (81)
T ss_dssp CBCTTTCCBCC---SCCEEETTEEECTTTS--------SCSSSCCCCCS
T ss_pred CcCccccCEec---cceEEECCceeCccCC--------ccccCCCCCCC
Confidence 46888877663 1222334566777663 47777777653
No 160
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=32.09 E-value=7.4 Score=20.98 Aligned_cols=40 Identities=25% Similarity=0.587 Sum_probs=22.7
Q ss_pred cccccccCCCceeec-CCCCcchHhhHHHHhh---CCCCcccccc
Q psy12643 69 ICLKLFLVGESAKKL-DCKHTFHSTCILPWLE---KTSTCPLCRH 109 (144)
Q Consensus 69 IC~~~~~~~~~~~~~-~C~h~f~~~Ci~~~~~---~~~~CP~Cr~ 109 (144)
||..... +...+.- .|...||..|+.--.. ....||.|+.
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 5665442 2222222 5889999999742221 3446888864
No 161
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.00 E-value=17 Score=20.94 Aligned_cols=37 Identities=19% Similarity=0.494 Sum_probs=19.8
Q ss_pred cccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccC
Q psy12643 65 SSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFK 112 (144)
Q Consensus 65 ~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~ 112 (144)
..|..|.+.+. ...+..-+..||..|+ .|..|...|.
T Consensus 16 ~~C~~C~~~I~---~~~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (81)
T 1x6a_A 16 EFCHGCSLLMT---GPFMVAGEFKYHPECF--------ACMSCKVIIE 52 (81)
T ss_dssp CBCTTTCCBCC---SCCBCCTTCCBCTTSC--------BCTTTCCBCC
T ss_pred CcCccCCCCcC---ceEEEECCceeccccC--------CccCCCCccC
Confidence 35777766652 2222234556666553 3666766664
No 162
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.50 E-value=15 Score=20.95 Aligned_cols=40 Identities=23% Similarity=0.376 Sum_probs=20.1
Q ss_pred cccccccccccC-CCceeecCCCCcchHhhHHHHhhCCCCccccccccC
Q psy12643 65 SSCPICLKLFLV-GESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFK 112 (144)
Q Consensus 65 ~~C~IC~~~~~~-~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~ 112 (144)
..|..|.+.+.. +....+..-+..||..|+ .|..|+.+|.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGGC--------BCTTTCCBCS
T ss_pred CCCccCCCcccCCCCceeEEECCcccCcccC--------ChhhCCCcCC
Confidence 456677665531 011222234556666663 3666666554
No 163
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.45 E-value=12 Score=21.31 Aligned_cols=40 Identities=28% Similarity=0.630 Sum_probs=23.9
Q ss_pred ccccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccCC
Q psy12643 64 ESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKT 113 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 113 (144)
...|..|.+.+..+. .+..-+..||..|+ .|..|+.+|..
T Consensus 9 ~~~C~~C~~~I~~~~--~v~a~~~~~H~~CF--------~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAE--KVSSLGKDWHKFCL--------KCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTT--EEEETTEEEETTTC--------BCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCe--EEEECCeEeeCCCC--------CCCCCCCccCC
Confidence 456888877664222 22234566777663 47777777654
No 164
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=31.38 E-value=43 Score=22.70 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=24.6
Q ss_pred CcccccccccccccCCCceeec---CCCCcchHhhHHHHhhC
Q psy12643 62 EPESSCPICLKLFLVGESAKKL---DCKHTFHSTCILPWLEK 100 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~---~C~h~f~~~Ci~~~~~~ 100 (144)
..+..|.||-+. ...+.- +|...||..||...+..
T Consensus 77 G~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 77 GYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp SSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred CCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCH
Confidence 347789999654 333332 48899999999887763
No 165
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.64 E-value=13 Score=20.75 Aligned_cols=10 Identities=40% Similarity=0.723 Sum_probs=5.2
Q ss_pred cccccccccc
Q psy12643 65 SSCPICLKLF 74 (144)
Q Consensus 65 ~~C~IC~~~~ 74 (144)
..|..|.+.+
T Consensus 6 ~~C~~C~~~I 15 (69)
T 2cur_A 6 SGCVKCNKAI 15 (69)
T ss_dssp CCCSSSCCCC
T ss_pred CCCcccCCEe
Confidence 3455555544
No 166
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=30.27 E-value=9.1 Score=21.48 Aligned_cols=36 Identities=25% Similarity=0.558 Sum_probs=21.4
Q ss_pred ccccccccccccCCCce--eecC---CCCcchHhhHHHHhh
Q psy12643 64 ESSCPICLKLFLVGESA--KKLD---CKHTFHSTCILPWLE 99 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~--~~~~---C~h~f~~~Ci~~~~~ 99 (144)
...|+-|...++....- +.-. |++.||..|...|..
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 35678777666433222 2222 777888888777654
No 167
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.06 E-value=20 Score=20.55 Aligned_cols=37 Identities=19% Similarity=0.522 Sum_probs=18.9
Q ss_pred cccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccC
Q psy12643 65 SSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFK 112 (144)
Q Consensus 65 ~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~ 112 (144)
..|..|.+.+.. ..+..-+..||..|+ .|..|+.+|.
T Consensus 16 ~~C~~C~~~I~~---~~v~a~~~~~H~~CF--------~C~~C~~~L~ 52 (80)
T 2cuq_A 16 PRCARCSKTLTQ---GGVTYRDQPWHRECL--------VCTGCQTPLA 52 (80)
T ss_dssp CCCTTTCCCCCS---CCEESSSSEECTTTC--------BCSSSCCBCT
T ss_pred CcCCCCCCEecC---cEEEECCchhhhhhC--------CcccCCCcCC
Confidence 456666655521 122334555665553 3666666664
No 168
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=30.02 E-value=41 Score=26.19 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=24.2
Q ss_pred CcccccccccccccCCCceeec--CCCCcchHhhHHHHhh
Q psy12643 62 EPESSCPICLKLFLVGESAKKL--DCKHTFHSTCILPWLE 99 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~--~C~h~f~~~Ci~~~~~ 99 (144)
..+..|.+|-+.- .-...- .|...||..||...+.
T Consensus 91 G~~~yCr~C~~Gg---~l~~Cdn~~C~r~FC~~Ci~~n~g 127 (386)
T 2pv0_B 91 GYQSYCSICCSGE---TLLICGNPDCTRCYCFECVDSLVG 127 (386)
T ss_dssp SSBCSCTTTCCCS---SCEECCSTTCCCEECHHHHHHHTC
T ss_pred CCcccceEcCCCC---eEEEeCCCCCCcchHHHHHHHhcC
Confidence 3477799986542 222222 6899999999998874
No 169
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=29.96 E-value=33 Score=20.62 Aligned_cols=40 Identities=25% Similarity=0.457 Sum_probs=25.1
Q ss_pred cccCCCcccccccccccccCCCceee--cCCCCcchHhhHHHH
Q psy12643 57 EVTSHEPESSCPICLKLFLVGESAKK--LDCKHTFHSTCILPW 97 (144)
Q Consensus 57 ~~~~~~~~~~C~IC~~~~~~~~~~~~--~~C~h~f~~~Ci~~~ 97 (144)
+++.......|.||...- .|....- -.|...||-.|....
T Consensus 10 NIp~~R~~l~C~iC~~~~-~GAciqC~~~~C~~~fHv~CA~~a 51 (87)
T 2lq6_A 10 NIPPARWKLTCYLCKQKG-VGASIQCHKANCYTAFHVTCAQKA 51 (87)
T ss_dssp CCCCCCCCCCBTTTTBCC-SSCEEECSCTTTCCEEEHHHHHHH
T ss_pred CCChHHhcCCCcCCCCCC-CcEeEecCCCCCCCcCcHHHHHHC
Confidence 445556688999996431 1122222 259999999997653
No 170
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.80 E-value=28 Score=20.17 Aligned_cols=42 Identities=24% Similarity=0.502 Sum_probs=25.2
Q ss_pred cccccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccCCC
Q psy12643 63 PESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTD 114 (144)
Q Consensus 63 ~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 114 (144)
....|..|.+.+..... +..-+..||..|+ .|-.|+..|...
T Consensus 14 ~~~~C~~C~~~I~~~e~--v~a~~~~wH~~CF--------~C~~C~~~L~~~ 55 (82)
T 2co8_A 14 AGDLCALCGEHLYVLER--LCVNGHFFHRSCF--------RCHTCEATLWPG 55 (82)
T ss_dssp SSCBCSSSCCBCCTTTB--CCBTTBCCBTTTC--------BCSSSCCBCCTT
T ss_pred CCCCCcccCCCcccceE--EEECCCeeCCCcC--------EEcCCCCCcCCC
Confidence 35678888877632222 2234566777773 477777766543
No 171
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=29.36 E-value=6.5 Score=29.70 Aligned_cols=47 Identities=21% Similarity=0.445 Sum_probs=30.9
Q ss_pred CcccccccccccccCCCceeec---CCC--CcchHhhHHHHhhCCCCccccccc
Q psy12643 62 EPESSCPICLKLFLVGESAKKL---DCK--HTFHSTCILPWLEKTSTCPLCRHE 110 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~---~C~--h~f~~~Ci~~~~~~~~~CP~Cr~~ 110 (144)
+....|++|-.....+ .+.. .-| +.+|..|-..|-.....||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s--~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAG--MIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEE--EEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCcee--EEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 5578899998765211 1111 123 456777888887778889999875
No 172
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=28.98 E-value=14 Score=21.05 Aligned_cols=46 Identities=13% Similarity=0.091 Sum_probs=26.0
Q ss_pred CcccccccccccccCCCceeecCCCCcchH-hhHHHHhhCCCCcccccccc
Q psy12643 62 EPESSCPICLKLFLVGESAKKLDCKHTFHS-TCILPWLEKTSTCPLCRHEF 111 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~-~Ci~~~~~~~~~CP~Cr~~~ 111 (144)
.+-+.|..|...+..+ .....=+..||. .|..+. ....|..|...+
T Consensus 25 ~~CF~C~~C~~~L~~~--~~~~~~g~~yC~~~cy~~~--f~~~C~~C~~~~ 71 (76)
T 1iml_A 25 RPCLKCEKCGKTLTSG--GHAEHEGKPYCNHPCYSAM--FGPKGFGRGGAE 71 (76)
T ss_dssp TTTCBCTTTCCBCCTT--TEEEETTEEEETTTHHHHH--SSCCCSSCCCSS
T ss_pred CCCCCccccCccCCCC--ceECcCCeEeeCHHHHHHH--hCccCCCcCCce
Confidence 3356788887776432 122234566777 576443 455677776543
No 173
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=27.91 E-value=23 Score=24.12 Aligned_cols=51 Identities=10% Similarity=0.232 Sum_probs=28.5
Q ss_pred CcccccccccccccC-CCceeecCCCCcchHhhHHHHhhCCCCccccccccCC
Q psy12643 62 EPESSCPICLKLFLV-GESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKT 113 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~-~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 113 (144)
.+-+.|..|...+.. +. .....=+..||..|..+.+.....|..|.+.+..
T Consensus 30 ~~CF~C~~C~~~L~~~g~-~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~ 81 (188)
T 1rut_X 30 SRCLKCSSCQAQLGDIGT-SSYTKSGMILCRNDYIRLFGNSGACSACGQSIPA 81 (188)
T ss_dssp GGGCBCTTTCCBHHHHCS-EEEEETTEEECHHHHHHHHSCCEECTTTCCEECT
T ss_pred ccCcccCCCCcccccCCc-eEEEeCCccccccccccccccCCccccCCCcccc
Confidence 345677777766632 11 1222345667777766544333367777776654
No 174
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.08 E-value=28 Score=20.00 Aligned_cols=40 Identities=23% Similarity=0.545 Sum_probs=22.2
Q ss_pred cccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccCC
Q psy12643 65 SSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKT 113 (144)
Q Consensus 65 ~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 113 (144)
..|..|...+..+ ..++..-+..||..|+ .|..|..+|..
T Consensus 16 ~~C~~C~~~I~~~-~~~~~a~~~~~H~~CF--------~C~~C~~~L~~ 55 (82)
T 2ehe_A 16 NTCAECQQLIGHD-SRELFYEDRHFHEGCF--------RCCRCQRSLAD 55 (82)
T ss_dssp CBCTTTCCBCCSS-CCBCCCSSCCCBTTTS--------BCTTTCCBCSS
T ss_pred CcCccCCCccccC-cEEEEeCCccccccCC--------eecCCCCccCC
Confidence 4677777766311 1222224566776663 37777776653
No 175
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.06 E-value=19 Score=20.14 Aligned_cols=41 Identities=29% Similarity=0.607 Sum_probs=21.5
Q ss_pred cccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccCCC
Q psy12643 65 SSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTD 114 (144)
Q Consensus 65 ~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 114 (144)
..|..|.+.+... ...+..-+..||..|+ .|..|+.++...
T Consensus 6 ~~C~~C~~~I~~~-~~~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1x4k_A 6 SGCQECKKTIMPG-TRKMEYKGSSWHETCF--------ICHRCQQPIGTK 46 (72)
T ss_dssp CCBSSSCCCCCSS-SCEEEETTEEEETTTT--------CCSSSCCCCCSS
T ss_pred CCCccCCCcccCC-ceEEEECcCeecccCC--------cccccCCccCCC
Confidence 4577776665321 1122234556666663 366776666543
No 176
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=26.62 E-value=32 Score=21.26 Aligned_cols=13 Identities=31% Similarity=0.981 Sum_probs=10.0
Q ss_pred CCCccccccccCC
Q psy12643 101 TSTCPLCRHEFKT 113 (144)
Q Consensus 101 ~~~CP~Cr~~~~~ 113 (144)
...||+|.+++..
T Consensus 47 g~~CPvCgs~l~~ 59 (112)
T 1l8d_A 47 KGKCPVCGRELTD 59 (112)
T ss_dssp SEECTTTCCEECH
T ss_pred CCCCCCCCCcCCH
Confidence 4469999888774
No 177
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.54 E-value=16 Score=21.07 Aligned_cols=37 Identities=22% Similarity=0.620 Sum_probs=17.8
Q ss_pred cccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccC
Q psy12643 65 SSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFK 112 (144)
Q Consensus 65 ~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~ 112 (144)
..|..|...+. ...+..-+..||..|+ .|..|..+|.
T Consensus 16 ~~C~~C~~~I~---~~~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (81)
T 2dlo_A 16 EKCATCSQPIL---DRILRAMGKAYHPGCF--------TCVVCHRGLD 52 (81)
T ss_dssp CBCTTTCCBCC---SCCEEETTEEECTTTC--------BCSSSCCBCT
T ss_pred CccccCCCeec---ceeEEECCccccHHhc--------CcccCCCccC
Confidence 44666655542 1122223445555552 3666666554
No 178
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.81 E-value=18 Score=20.73 Aligned_cols=38 Identities=24% Similarity=0.488 Sum_probs=19.2
Q ss_pred cccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccCC
Q psy12643 65 SSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKT 113 (144)
Q Consensus 65 ~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 113 (144)
..|..|...+.. ..+..-+..||..|+ .|..|+.++..
T Consensus 16 ~~C~~C~~~I~~---~~v~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (80)
T 1x3h_A 16 PKCGGCNRPVLE---NYLSAMDTVWHPECF--------VCGDCFTSFST 53 (80)
T ss_dssp CBCTTTCCBCCS---SCEEETTEEECTTTC--------BCSSSCCBSCS
T ss_pred CccccCCCeecc---eeEEECCCeEecCcC--------ChhhCCCCCCC
Confidence 356666665521 122223445665553 36667666644
No 179
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=23.42 E-value=46 Score=15.63 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=14.9
Q ss_pred cccccccccccCCCceeecCCCCcchHhh
Q psy12643 65 SSCPICLKLFLVGESAKKLDCKHTFHSTC 93 (144)
Q Consensus 65 ~~C~IC~~~~~~~~~~~~~~C~h~f~~~C 93 (144)
..|+.|....-.. ..+..-|..||..|
T Consensus 4 ~~C~~C~k~Vy~~--Ek~~~~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPT--EKVNCLDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGG--GCCCSSSSCCCGGG
T ss_pred CcCCccCCEEecc--eeEEECCeEecccC
Confidence 4688887654111 12223466777776
No 180
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=23.25 E-value=16 Score=21.15 Aligned_cols=10 Identities=20% Similarity=0.624 Sum_probs=5.3
Q ss_pred cccccccccc
Q psy12643 65 SSCPICLKLF 74 (144)
Q Consensus 65 ~~C~IC~~~~ 74 (144)
..|..|.+.+
T Consensus 8 ~~C~~C~~~I 17 (81)
T 1a7i_A 8 NKCGACGRTV 17 (81)
T ss_dssp CBCSSSCCBC
T ss_pred CcCcCcCccc
Confidence 4455555544
No 181
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=22.65 E-value=22 Score=20.17 Aligned_cols=42 Identities=19% Similarity=0.426 Sum_probs=24.7
Q ss_pred ccccccccccccC-C-CceeecCCCCcchHhhHHHHhhCCCCccccccccCC
Q psy12643 64 ESSCPICLKLFLV-G-ESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKT 113 (144)
Q Consensus 64 ~~~C~IC~~~~~~-~-~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 113 (144)
...|+.|...+.. + ....+..-+..||..|+ .|..|+.+|..
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF--------~C~~C~~~L~~ 58 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCF--------HCKKCSVNLAN 58 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEEETTEEEETTTC--------BCSSSCCBCTT
T ss_pred CccCcccCCcccCCCCCceeEEECcceeCcccC--------EehhcCCCCCC
Confidence 3568888777632 0 11222334567777773 48888887764
No 182
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=22.33 E-value=83 Score=20.81 Aligned_cols=32 Identities=6% Similarity=-0.002 Sum_probs=17.5
Q ss_pred CcccccccccccccCCCceeecCCCCcchHhhHHH
Q psy12643 62 EPESSCPICLKLFLVGESAKKLDCKHTFHSTCILP 96 (144)
Q Consensus 62 ~~~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~ 96 (144)
.+-+.|..|...+.... ...=|..||..|...
T Consensus 31 ~~CF~C~~C~~~L~~~~---f~~~g~~yC~~~y~~ 62 (169)
T 2rgt_A 31 SKCLKCSDCHVPLAERC---FSRGESVYCKDDFFK 62 (169)
T ss_dssp TTTSBCTTTCCBCCSCC---EESSSCEECHHHHHH
T ss_pred cccCccCCCCCcCCCCC---cccCCeeeecccccc
Confidence 34567777776663211 123455667666544
No 183
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.32 E-value=43 Score=19.29 Aligned_cols=39 Identities=26% Similarity=0.570 Sum_probs=24.1
Q ss_pred ccccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccC
Q psy12643 64 ESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFK 112 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~ 112 (144)
...|..|.+.+..+.. +..-+..||..|+ .|..|+..|.
T Consensus 15 ~~~C~~C~~~I~~~~~--v~a~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQS--LLALDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSCC--EEETTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCcCcCCeeCCCeE--EEECCcccccccC--------CcCcCCCCcC
Confidence 5678888877643222 2234556777663 4778877775
No 184
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=21.77 E-value=6.7 Score=23.28 Aligned_cols=14 Identities=21% Similarity=0.653 Sum_probs=11.8
Q ss_pred CCCCcchHhhHHHH
Q psy12643 84 DCKHTFHSTCILPW 97 (144)
Q Consensus 84 ~C~h~f~~~Ci~~~ 97 (144)
.|++.||..|...|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 58999999997665
No 185
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=21.30 E-value=5.6 Score=24.01 Aligned_cols=10 Identities=30% Similarity=1.095 Sum_probs=5.2
Q ss_pred cccccccccc
Q psy12643 65 SSCPICLKLF 74 (144)
Q Consensus 65 ~~C~IC~~~~ 74 (144)
..|+.|...+
T Consensus 3 ~~CP~C~~~l 12 (81)
T 2jrp_A 3 ITCPVCHHAL 12 (81)
T ss_dssp CCCSSSCSCC
T ss_pred CCCCCCCCcc
Confidence 3455555444
No 186
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.66 E-value=43 Score=19.67 Aligned_cols=11 Identities=27% Similarity=0.637 Sum_probs=5.7
Q ss_pred ccccccccccc
Q psy12643 64 ESSCPICLKLF 74 (144)
Q Consensus 64 ~~~C~IC~~~~ 74 (144)
...|..|.+.+
T Consensus 15 ~~~C~~C~~~I 25 (91)
T 2d8y_A 15 RETCVECQKTV 25 (91)
T ss_dssp SCBCTTTCCBC
T ss_pred CCcCccCCCcc
Confidence 34555555544
No 187
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=20.26 E-value=61 Score=20.28 Aligned_cols=33 Identities=27% Similarity=0.420 Sum_probs=14.7
Q ss_pred ccccccccccccCCCceeecCCCCcchHhhHHHH
Q psy12643 64 ESSCPICLKLFLVGESAKKLDCKHTFHSTCILPW 97 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~ 97 (144)
-+.|..|...+..+.. ....-+..||..|....
T Consensus 36 CF~C~~C~~~L~~g~~-f~~~~g~~yC~~cy~~~ 68 (123)
T 2l3k_A 36 CFKCAACQKHFSVGDR-YLLINSDIVCEQDIYEW 68 (123)
T ss_dssp TCBCTTTCCBCCTTCE-EEECSSSEEEGGGHHHH
T ss_pred cCccccCCCCCCCCCc-EEeeCCEEEcHHHhHHH
Confidence 4555556555522221 12223445555555444
No 188
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=20.12 E-value=29 Score=19.11 Aligned_cols=42 Identities=21% Similarity=0.517 Sum_probs=26.0
Q ss_pred ccccccccccccCCCceeecCCCCcchHhhHHHHhhCCCCccccccccCCC
Q psy12643 64 ESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTD 114 (144)
Q Consensus 64 ~~~C~IC~~~~~~~~~~~~~~C~h~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 114 (144)
...|..|...+..... ++..-+..||..|. .|-.|..++...
T Consensus 11 ~~~C~~C~~~i~~~e~-~~~~~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEK-IVNSNGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCE-EEEETTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CccchhcCccccCCce-EEEeCcCeeCcCCC--------cccCCCCCCCCC
Confidence 5678888887632222 22234566787774 478888777543
Done!