RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12643
(144 letters)
>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain.
Length = 46
Score = 64.3 bits (157), Expect = 4e-15
Identities = 22/45 (48%), Positives = 25/45 (55%)
Query: 66 SCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHE 110
CPICL F GE L C H FH C+ WL ++TCPLCR
Sbjct: 2 ECPICLDEFEPGEEVVVLPCGHVFHKECLDKWLRSSNTCPLCRAP 46
>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a
specialized type of Zn-finger of 40 to 60 residues that
binds two atoms of zinc; defined by the 'cross-brace'
motif C-X2-C-X(9-39)-C-X(1-3)-
H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved
in mediating protein-protein interactions; identified in
a proteins with a wide range of functions such as viral
replication, signal transduction, and development; has
two variants, the C3HC4-type and a C3H2C3-type (RING-H2
finger), which have different cysteine/histidine
pattern; a subset of RINGs are associated with B-Boxes
(C-X2-H-X7-C-X7-C-X2-C-H-X2-H).
Length = 45
Score = 52.1 bits (125), Expect = 3e-10
Identities = 21/46 (45%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 67 CPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTS-TCPLCRHEF 111
CPICL+ F E L C H F +CI WL+ TCPLCR
Sbjct: 2 CPICLEEF--REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45
>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger).
Length = 45
Score = 46.7 bits (111), Expect = 3e-08
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 63 PESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRH 109
E CPICL L + C H F CIL +L+K S CP+CR
Sbjct: 1 EELECPICLDLL--RDPVVLTPCGHVFCRECILRYLKKKSKCPICRT 45
>gnl|CDD|214546 smart00184, RING, Ring finger. E3 ubiquitin-protein ligase
activity is intrinsic to the RING domain of c-Cbl and is
likely to be a general function of this domain; Various
RING fingers exhibit binding activity towards E2
ubiquitin-conjugating enzymes (Ubc' s).
Length = 40
Score = 46.3 bits (110), Expect = 4e-08
Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 67 CPICLKLFLVGESAKKLDCKHTFHSTCILPWLE-KTSTCPLC 107
CPICL+ +L + L C HTF +CI WLE +TCP+C
Sbjct: 1 CPICLEEYL--KDPVILPCGHTFCRSCIRKWLESGNNTCPIC 40
>gnl|CDD|221705 pfam12678, zf-rbx1, RING-H2 zinc finger. There are 8 cysteine/
histidine residues which are proposed to be the
conserved residues involved in zinc binding. The
protein, of which this domain is the conserved region,
participates in diverse functions relevant to chromosome
metabolism and cell cycle control.
Length = 73
Score = 45.1 bits (107), Expect = 3e-07
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 11/46 (23%)
Query: 63 PESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCR 108
P CP+ +C H FH CI WL+ +TCPLCR
Sbjct: 39 PGDDCPVVW-----------GECGHAFHLHCISRWLKTRNTCPLCR 73
>gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase
[Posttranslational modification, protein turnover,
chaperones].
Length = 374
Score = 47.7 bits (113), Expect = 4e-07
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 37 YEFNDELPPPASKAFVKSLQEVTSHEPES--SCPICLKLFLVGESAKKLDCKHTFHSTCI 94
Y ++ +P +K +K L + E + C IC+ F+ + + L C H FH C+
Sbjct: 294 YSSSEAIPTTTTKGSLKPLSIERAVEADKGVECAICMSNFIKNDRLRVLPCDHRFHVGCV 353
Query: 95 LPWLEKTS-TCPLCRHE 110
WL S CP+CR
Sbjct: 354 DKWLLGYSNKCPVCRTA 370
>gnl|CDD|193335 pfam12861, zf-Apc11, Anaphase-promoting complex subunit 11 RING-H2
finger. Apc11 is one of the subunits of the
anaphase-promoting complex or cyclosome. The APC
subunits are cullin family proteins with ubiquitin
ligase activity. Polyubiquitination marks proteins for
degradation by the 26S proteasome and is carried out by
a cascade of enzymes that includes ubiquitin-activating
enzymes (E1s), ubiquitin-conjugating enzymes (E2s), and
ubiquitin ligases (E3s). Apc11 acts as an E3 enzyme and
is responsible for recruiting E2s to the APC and for
mediating the subsequent transfer of ubiquitin to APC
substrates in vivo. In Saccharomyces cerevisiae this
RING-H2 finger protein defines the minimal ubiquitin
ligase activity of the APC, and the integrity of the
RING-H2 finger is essential for budding yeast cell
viability.
Length = 85
Score = 42.9 bits (101), Expect = 2e-06
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 14/56 (25%)
Query: 63 PESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTST---CPLCRHEFKTDD 115
P CP+ CKH FH CIL WL ++ CP+CR F +
Sbjct: 41 PGDDCPLVWGK-----------CKHNFHMHCILKWLATETSKGLCPMCRQTFVFAE 85
>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component
[Posttranslational modification, protein turnover,
chaperones].
Length = 491
Score = 44.6 bits (105), Expect = 4e-06
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 81 KKLDCKHTFHSTCILPWLEKTSTCPLCR 108
K+L C H H C+ WLE+ TCP+CR
Sbjct: 314 KRLPCGHILHLHCLKNWLERQQTCPICR 341
>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger). The
C3HC4 type zinc-finger (RING finger) is a cysteine-rich
domain of 40 to 60 residues that coordinates two zinc
ions, and has the consensus sequence:
C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C
where X is any amino acid. Many proteins containing a
RING finger play a key role in the ubiquitination
pathway.
Length = 40
Score = 39.8 bits (93), Expect = 1e-05
Identities = 21/42 (50%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 67 CPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTS-TCPLC 107
CPICL+ + L C H F S CIL WLE + TCPLC
Sbjct: 1 CPICLEEPK--DPVTILPCGHLFCSKCILSWLESGNVTCPLC 40
>gnl|CDD|227544 COG5219, COG5219, Uncharacterized conserved protein, contains RING
Zn-finger [General function prediction only].
Length = 1525
Score = 42.3 bits (99), Expect = 2e-05
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 67 CPICLKLFLVGE----SAKKLDCKHTFHSTCILPWLEKT--STCPLCRHEF 111
C IC + + + S + CK+ FH+ C+ W + S CPLCR E
Sbjct: 1472 CAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEI 1522
>gnl|CDD|227521 COG5194, APC11, Component of SCF ubiquitin ligase and
anaphase-promoting complex [Posttranslational
modification, protein turnover, chaperones / Cell
division and chromosome partitioning].
Length = 88
Score = 39.4 bits (92), Expect = 5e-05
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 85 CKHTFHSTCILPWLEKTSTCPLCRHEF 111
C H FH CI WL+ CPL R +
Sbjct: 54 CNHAFHDHCIYRWLDTKGVCPLDRQTW 80
>gnl|CDD|222944 PHA02929, PHA02929, N1R/p28-like protein; Provisional.
Length = 238
Score = 35.9 bits (83), Expect = 0.003
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 85 CKHTFHSTCILPWLEKTSTCPLCRHEF 111
C H F CI W ++ +TCP+CR F
Sbjct: 200 CNHVFCIECIDIWKKEKNTCPVCRTPF 226
>gnl|CDD|233043 TIGR00599, rad18, DNA repair protein rad18. All proteins in this
family for which functions are known are involved in
nucleotide excision repair.This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 397
Score = 35.4 bits (81), Expect = 0.006
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 85 CKHTFHSTCILPWLEKTSTCPLCRHEFK 112
C HTF S CI L CPLCR E +
Sbjct: 44 CSHTFCSLCIRRCLSNQPKCPLCRAEDQ 71
>gnl|CDD|227719 COG5432, RAD18, RING-finger-containing E3 ubiquitin ligase [Signal
transduction mechanisms].
Length = 391
Score = 32.4 bits (73), Expect = 0.065
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 85 CKHTFHSTCILPWLEKTSTCPLCRHEFK 112
C HTF S CI L CP+CR +
Sbjct: 43 CGHTFCSLCIRRHLGTQPFCPVCREDPC 70
>gnl|CDD|234390 TIGR03904, SAM_YgiQ, uncharacterized radical SAM protein YgiQ.
Members of this family are fairly widespread
uncharacterized radical SAM family proteins, many of
which are designated YgiQ [Unknown function, Enzymes of
unknown specificity].
Length = 559
Score = 30.9 bits (71), Expect = 0.20
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 15 PGETPNHMLHLARLLRDFGMNPYEFNDELPPPAS 48
PG T M+ LA L+D G P + D P P +
Sbjct: 491 PGCTLKDMVELAEYLKDLGFRPEQVQDFTPTPGT 524
>gnl|CDD|227861 COG5574, PEX10, RING-finger-containing E3 ubiquitin ligase
[Posttranslational modification, protein turnover,
chaperones].
Length = 271
Score = 30.2 bits (68), Expect = 0.30
Identities = 18/70 (25%), Positives = 24/70 (34%), Gaps = 17/70 (24%)
Query: 53 KSLQEVTSHEPESS------------CPICLKLFLVGESAKKLDCKHTFHSTCIL-PW-L 98
Q +T C +CL+ E C H F +C+L W
Sbjct: 192 TLFQVITKENLSKKNGLPFIPLADYKCFLCLE---EPEVPSCTPCGHLFCLSCLLISWTK 248
Query: 99 EKTSTCPLCR 108
+K CPLCR
Sbjct: 249 KKYEFCPLCR 258
>gnl|CDD|165237 PHA02926, PHA02926, zinc finger-like protein; Provisional.
Length = 242
Score = 30.0 bits (67), Expect = 0.30
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 20/73 (27%)
Query: 56 QEVTSHEPESSCPICLKLFLVGESAKKLD----------CKHTFHSTCILPWLEK----- 100
++V E C IC ++ +K+L+ C H F TCI W
Sbjct: 162 EDVYRVSKEKECGICYEVVY----SKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETG 217
Query: 101 -TSTCPLCRHEFK 112
+ CP+CR F+
Sbjct: 218 ASDNCPICRTRFR 230
>gnl|CDD|128780 smart00504, Ubox, Modified RING finger domain. Modified RING
finger domain, without the full complement of
Zn2+-binding ligands. Probable involvement in
E2-dependent ubiquitination.
Length = 63
Score = 28.4 bits (64), Expect = 0.38
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 87 HTFHSTCILPWLEKTSTCPLCRHEFKTDD 115
T+ + I WL T P+ +D
Sbjct: 21 QTYERSAIEKWLLSHGTDPVTGQPLTHED 49
>gnl|CDD|204746 pfam11793, FANCL_C, FANCL C-terminal domain. This domain is found
at the C-terminus of the Fancl protein in humans which
is the putative E3 ubiquitin ligase subunit of the FA
complex (Fanconi anaemia). Eight subunits of the Fanconi
anaemia gene products form a multisubunit nuclear
complex which is required for mono-ubiquitination of a
downstream FA protein, FANCD2.
Length = 70
Score = 27.4 bits (61), Expect = 0.90
Identities = 18/69 (26%), Positives = 23/69 (33%), Gaps = 16/69 (23%)
Query: 64 ESSCPICLKLFLVG-----ESAKKLDCKHTFHSTCILPWLE-----KTS------TCPLC 107
E C IC L G S C FH C+ WL + S TCP C
Sbjct: 2 EIECGICYAYRLDGGEIPDISCDNPKCGLPFHIACLYEWLRTLRDSRQSFNVSFGTCPYC 61
Query: 108 RHEFKTDDA 116
+ + +
Sbjct: 62 KAKISVKFS 70
>gnl|CDD|193542 cd05666, M20_Acy1_like1, M20 Peptidase Aminoacylase 1 subfamily.
Peptidase M20 family, Uncharacterized subfamily of
bacterial proteins predicted as putative amidohydrolases
or hippurate hydrolases. These are a class of zinc
binding homodimeric enzymes involved in hydrolysis of
N-acetylated proteins. N-terminal acetylation of
proteins is a widespread and highly conserved process
that is involved in protection and stability of
proteins. Several types of aminoacylases can be
distinguished on the basis of substrate specificity.
Aminoacylase 1 (ACY1) breaks down cytosolic aliphatic
N-acyl-alpha-amino acids (except L-aspartate),
especially N-acetyl-methionine and acetyl-glutamate into
L-amino acids and an acyl group. However, ACY1 can also
catalyze the reverse reaction, the synthesis of
acetylated amino acids. ACY1 may also play a role in
xenobiotic bioactivation as well as the inter-organ
processing of amino acid-conjugated xenobiotic
derivatives (S-substituted-N-acetyl-L-cysteine).
Length = 373
Score = 27.8 bits (63), Expect = 1.8
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 12/43 (27%)
Query: 13 LGPGE-TPNHMLHLARLLRDFGMNP-YEFNDELPPPASKAFVK 53
LG G+ MLH NP Y+FND + P + +V
Sbjct: 337 LGNGDGAGGAMLH----------NPGYDFNDAILPIGASYWVA 369
>gnl|CDD|235957 PRK07193, fliF, flagellar MS-ring protein; Reviewed.
Length = 552
Score = 28.0 bits (63), Expect = 2.2
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 16 GETPNHMLHLARLLRDFGMNPYEFNDELPPPASKAFVKS--LQEVTSHEPE 64
G + R F + +D+LP P S VK LQ + + EPE
Sbjct: 486 GVAQDAAAAAPRAENAFSASSLLGSDDLPEPGSGLEVKIEHLQLLANSEPE 536
>gnl|CDD|177301 PHA00733, PHA00733, hypothetical protein.
Length = 128
Score = 27.1 bits (60), Expect = 2.5
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 11/50 (22%)
Query: 67 CPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTDDA 116
CP+CL F S K+ H + + E + CP+C EF+ D+
Sbjct: 76 CPLCLMPFSSSVSLKQ-------H----IRYTEHSKVCPVCGKEFRNTDS 114
>gnl|CDD|217788 pfam03914, CBF, CBF/Mak21 family.
Length = 151
Score = 27.2 bits (61), Expect = 2.6
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 40 NDELPPPASKAFVKSLQEVTSHEPESSCPICLKLFLVGESAKK 82
+D LP AFVK L ++ H P S L L+ K+
Sbjct: 55 SDHLPAQRVAAFVKRLLQLALHAPPSF--ALGILPLIRNLLKR 95
>gnl|CDD|220669 pfam10272, Tmpp129, Putative transmembrane protein precursor. This
is a family of proteins conserved from worms to humans.
The proteins are purported to be transmembrane
protein-precursors but the function is unknown.
Length = 356
Score = 27.4 bits (61), Expect = 2.7
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 97 WLEKTSTCPLCRHEF 111
WL CP CR +F
Sbjct: 334 WLSSKCPCPTCRAKF 348
>gnl|CDD|227481 COG5152, COG5152, Uncharacterized conserved protein, contains RING
and CCCH-type Zn-fingers [General function prediction
only].
Length = 259
Score = 27.0 bits (59), Expect = 4.3
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 67 CPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFK 112
C IC K + ES +C H+F S C + +K C +C
Sbjct: 199 CGICKKDY---ESPVVTECGHSFCSLCAIRKYQKGDECGVCGKATY 241
>gnl|CDD|215749 pfam00148, Oxidored_nitro, Nitrogenase component 1 type
Oxidoreductase.
Length = 397
Score = 26.8 bits (60), Expect = 5.1
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 19 PNHMLHLARLLRDFGMNP 36
P+ LAR L + GM
Sbjct: 281 PDLAWGLARFLEELGMEV 298
>gnl|CDD|150637 pfam09986, DUF2225, Uncharacterized protein conserved in bacteria
(DUF2225). This domain, found in various hypothetical
bacterial proteins, has no known function.
Length = 214
Score = 26.5 bits (59), Expect = 5.3
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 99 EKTSTCPLCRHEFKTDDADYEAYKVQKK 126
+K CP+C +EFKT ++ K+
Sbjct: 3 DKKIVCPVCNNEFKTKKVKSSGLRLIKR 30
>gnl|CDD|119334 cd06564, GH20_DspB_LnbB-like, Glycosyl hydrolase family 20 (GH20)
catalytic domain of dispersin B (DspB),
lacto-N-biosidase (LnbB) and related proteins. Dispersin
B is a soluble beta-N-acetylglucosamidase found in
bacteria that hydrolyzes the beta-1,6-linkages of PGA
(poly-beta-(1,6)-N-acetylglucosamine), a major component
of the extracellular polysaccharide matrix.
Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I
oligosaccharides at the nonreducing terminus to produce
lacto-N-biose as part of the GNB/LNB
(galacto-N-biose/lacto-N-biose I) degradation pathway.
The lacto-N-biosidase from Bifidobacterium bifidum has
this GH20 domain, a carbohydrate binding module 32, and
a bacterial immunoglobulin-like domain 2, as well as a
YSIRK signal peptide and a G5 membrane anchor at the N
and C termini, respectively. The GH20 hexosaminidases
are thought to act via a catalytic mechanism in which
the catalytic nucleophile is not provided by solvent or
the enzyme, but by the substrate itself.
Length = 326
Score = 26.5 bits (59), Expect = 5.5
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 17 ETPNHMLHLARLLRDFGM-NPYEFND----ELPPPASKAFVKSL 55
++P H L + + + G+ NP+ D ++ P + FVK+L
Sbjct: 103 DSPGHSLAFTKAMPELGLKNPFSKYDKDTLDISNPEAVKFVKAL 146
>gnl|CDD|234874 PRK00955, PRK00955, hypothetical protein; Provisional.
Length = 620
Score = 26.4 bits (59), Expect = 6.5
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 15 PGETPNHMLHLARLLRDFGMNPYEFNDELPPPAS 48
PG T + LA +D G P + D P P +
Sbjct: 489 PGSTLEDAIELAEYTKDLGYQPEQVQDFYPTPGT 522
>gnl|CDD|107351 cd06356, PBP1_Amide_Urea_BP_like, Periplasmic component (FmdD) of
an active transport system for short-chain amides and
urea (FmdDEF). This group includes the type I
periplasmic-binding proteins that are predicted to have
a function similar to that of an active transport system
for short chain amides and/or urea in bacteria and
Archaea, by sequence comparison and phylogenetic
analysis.
Length = 334
Score = 26.1 bits (58), Expect = 6.8
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 37 YEFNDELPPPASKAFVKSLQEVTSHEP 63
+ +EL PA+KAFV+ + P
Sbjct: 244 ANYIEELDTPANKAFVERFRAKFPDAP 270
>gnl|CDD|221325 pfam11934, DUF3452, Domain of unknown function (DUF3452). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria and eukaryotes. This domain
is typically between 124 to 150 amino acids in length.
This domain is found associated with pfam01858,
pfam01857. This domain has a single completely
conserved residue W that may be functionally important.
Length = 138
Score = 25.7 bits (57), Expect = 7.2
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 25 LARLLRDFGMNPYEFNDELP 44
L ++LR +N EF +L
Sbjct: 18 LTQILRACKLNLVEFFKKLK 37
>gnl|CDD|226082 COG3552, CoxE, Protein containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 395
Score = 26.3 bits (58), Expect = 7.3
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 15 PGETPNHMLHLARLLRDFGM 34
PG ++++ AR LR G+
Sbjct: 8 PGRLADNIVGFARALRGAGI 27
>gnl|CDD|219072 pfam06527, TniQ, TniQ. This family consists of several bacterial
TniQ proteins. TniQ along with TniA and B is involved
in the transposition of the mercury-resistance
transposon Tn5053 which carries the mer operon. It has
been suggested that the tni genes are involved in the
dissemination of integrons.
Length = 136
Score = 25.4 bits (56), Expect = 8.2
Identities = 11/35 (31%), Positives = 12/35 (34%), Gaps = 10/35 (28%)
Query: 12 PLGPGETP----------NHMLHLARLLRDFGMNP 36
P PGET N L LRD G+
Sbjct: 7 PPHPGETLTSYLSRLAAANGTSSLRTFLRDLGIRF 41
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.422
Gapped
Lambda K H
0.267 0.0768 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,218,292
Number of extensions: 600986
Number of successful extensions: 789
Number of sequences better than 10.0: 1
Number of HSP's gapped: 781
Number of HSP's successfully gapped: 57
Length of query: 144
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 56
Effective length of database: 7,034,450
Effective search space: 393929200
Effective search space used: 393929200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.5 bits)