RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12643
(144 letters)
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural
genomics, PSI-2, protein struc initiative; NMR {Homo
sapiens}
Length = 91
Score = 93.2 bits (232), Expect = 4e-26
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 44 PPPASKAFVKSLQEVT------SHEPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPW 97
PPASK + +L E+ + E CPIC ++ G+ A +L C H FH C+ W
Sbjct: 14 NPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIW 73
Query: 98 LEKTSTCPLCRHEF 111
L+K+ TCP+CR F
Sbjct: 74 LQKSGTCPVCRCMF 87
>2ect_A Ring finger protein 126; metal binding protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 78
Score = 83.2 bits (206), Expect = 3e-22
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 64 ESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTDDADYEA 120
CP+C + + +GES ++L C H FH +CI+PWLE+ +CP+CR +
Sbjct: 15 GLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATNP 71
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid
herpesvirus 1} SCOP: g.44.1.1
Length = 68
Score = 70.5 bits (173), Expect = 2e-17
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 62 EPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKT------DD 115
CPICL+ + L C H F CI W+ + TCPLC+ ++ D
Sbjct: 3 TVAERCPICLEDP--SNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVVHTIESD 60
Query: 116 ADYEAYKV 123
+++ +
Sbjct: 61 SEFGDQLI 68
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn
binding domain, metal zinc, zinc-finger, metal binding
protein; NMR {Homo sapiens}
Length = 69
Score = 70.5 bits (173), Expect = 2e-17
Identities = 21/59 (35%), Positives = 29/59 (49%)
Query: 57 EVTSHEPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTDD 115
E T + E C ICL + GE ++L C H FH C+ WL CP+CR + +
Sbjct: 7 EGTEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 74
Score = 71.0 bits (174), Expect = 2e-17
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 57 EVTSHEPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHE 110
+V C +CL+ F + CKH FH C++ WLE CPLC
Sbjct: 8 KVKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMP 61
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 75
Score = 70.4 bits (173), Expect = 2e-17
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 47 ASKAFVKSL-----QEVTSHEPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKT 101
S L ++ C +C+ F + + L C H FH+ C+ WL+
Sbjct: 1 GSSGSSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN 60
Query: 102 STCPLCRHE 110
TCP+CR +
Sbjct: 61 RTCPICRAD 69
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1;
RCHY1, ring domain, zinc-binding domain, structural
genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Length = 55
Score = 65.4 bits (160), Expect = 1e-15
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 64 ESSCPICL-KLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCR 108
S CPICL + A L C H H TC L++ CPLC
Sbjct: 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCS 50
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 64.7 bits (158), Expect = 4e-15
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
Query: 47 ASKAFVKSLQEVTSHEPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPL 106
S ++++T E C IC+ G + L C H+F CI W ++ CP+
Sbjct: 1 GSSGSSGRVKQLTD---EEECCICMD----GRADLILPCAHSFCQKCIDKWSDRHRNCPI 53
Query: 107 CRHEFKTDD 115
CR + +
Sbjct: 54 CRLQMTGAN 62
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR
{Oryza sativa} SCOP: g.44.1.1
Length = 55
Score = 63.0 bits (154), Expect = 1e-14
Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 67 CPICLKLFLVGESAKKL-DCKHTFHSTCILPWLEKTSTCPLCRH 109
C +CL GE A+ L C H FH+ C+ WL STCPLCR
Sbjct: 8 CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRL 51
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 69
Score = 61.1 bits (148), Expect = 1e-13
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 62 EPESSCPICLKLF----LVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFK 112
SCPIC+ + G +C H F S C+ L+ +TCP CR +
Sbjct: 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase,
ubiquitylation, sumoylation, zinc-FI metal binding
protein; 1.80A {Rattus norvegicus}
Length = 71
Score = 59.9 bits (145), Expect = 3e-13
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 62 EPESSCPICLKLF----LVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTDD 115
SCPIC+ + G +C H F S C+ L+ +TCP CR +
Sbjct: 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 59.1 bits (143), Expect = 6e-13
Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 64 ESSCPICLKLFLVGESAKKL-DCKHTFHSTCILPWLEKTSTCPLCRHEFK 112
+C C + +C H+FH+ C+ W+++ + CPLC+ ++
Sbjct: 26 MDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding;
HET: SUC; 1.50A {Homo sapiens}
Length = 64
Score = 58.6 bits (142), Expect = 7e-13
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 66 SCPICLKLF----LVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTDD 115
SCPIC+ + G +C H F S C+ L+ +TCP CR +
Sbjct: 5 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 72
Score = 55.9 bits (135), Expect = 9e-12
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 62 EPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHE 110
P C IC + ++ +C HTF +CI+ ++ CP C
Sbjct: 13 TPYILCSICKGYLI--DATTITECLHTFCKSCIVRHFYYSNRCPKCNIV 59
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 55.6 bits (134), Expect = 2e-11
Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 5/69 (7%)
Query: 66 SCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTDDADYEAYKVQK 125
C IC + F ++ C+H F +C L T C +C T A ++
Sbjct: 17 RCFICRQAF---QNPVVTKCRHYFCESCALEHFRATPRCYICDQP--TGGIFNPAKELMA 71
Query: 126 KREKEREGE 134
K +K
Sbjct: 72 KLQKSGPSS 80
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb,
E3-ligase, nuclear protein, chromosomal protein,
transcription regulation; 2.0A {Mus musculus} PDB:
3rpg_B 2h0d_A
Length = 108
Score = 54.4 bits (131), Expect = 8e-11
Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 15/91 (16%)
Query: 62 EPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKT-------- 113
P C +C F+ ++ ++C H+F TCI+ +LE + CP+C +
Sbjct: 13 NPHLMCVLCGGYFI--DATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIR 70
Query: 114 -----DDADYEAYKVQKKREKEREGEIENLH 139
D Y+ K E +R + H
Sbjct: 71 SDKTLQDIVYKLVPGLFKNEMKRRRDFYAAH 101
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 52.9 bits (127), Expect = 1e-10
Identities = 17/61 (27%), Positives = 19/61 (31%), Gaps = 3/61 (4%)
Query: 54 SLQEVTSHEPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKT 113
S C ICL+ L CKH F C+ C LCR E
Sbjct: 5 SSGNTAPSLTVPECAICLQTC---VHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61
Query: 114 D 114
D
Sbjct: 62 D 62
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch
signaling, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.44.1.1
Length = 114
Score = 52.5 bits (125), Expect = 6e-10
Identities = 16/88 (18%), Positives = 26/88 (29%), Gaps = 20/88 (22%)
Query: 44 PPPASKAFVKSLQEVTSHEPESSCPICLKLFLVGESA---------------KKLDCKHT 88
+ ++ E PE C IC++ V + C H
Sbjct: 5 SSGEPEQVIRKYTEELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHA 64
Query: 89 FHSTCILPWLEKTS-----TCPLCRHEF 111
FH C+L + CP C+ +
Sbjct: 65 FHLLCLLAMYCNGNKDGSLQCPSCKTIY 92
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding,
translesion synthesis, UB conjugation pathway; 1.80A
{Homo sapiens}
Length = 99
Score = 50.9 bits (122), Expect = 2e-09
Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 2/71 (2%)
Query: 45 PPASKAFVKSLQEVTSHEPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTC 104
A + L + + + C IC + F + C H + S CI +L + C
Sbjct: 3 SLAESRWPPGLAVMKTIDDLLRCGICFEYFN--IAMIIPQCSHNYCSLCIRKFLSYKTQC 60
Query: 105 PLCRHEFKTDD 115
P C D
Sbjct: 61 PTCCVTVTEPD 71
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 74
Score = 50.3 bits (120), Expect = 2e-09
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 59 TSHEPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLE--KTSTCPLCRHEFKTD 114
T + C IC L + G+S + C H C+ + + CP C + +
Sbjct: 10 TYPDAVKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65
>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase,
protein binding complex; 4.80A {Homo sapiens}
Length = 149
Score = 51.6 bits (123), Expect = 2e-09
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 62 EPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTDDADY 118
E E C IC + F A L+C H+F S CI W+++ CP+CR + K+
Sbjct: 62 ENELQCIICSEYF---IEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKTYSL 115
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 49.3 bits (118), Expect = 4e-09
Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 12/72 (16%)
Query: 47 ASKAFVKSLQEVTSHEPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEK---TST 103
AS FV LQE E CPICL + + +DC H F CI E
Sbjct: 9 ASGQFVNKLQE------EVICPICLDIL---QKPVTIDCGHNFCLKCITQIGETSCGFFK 59
Query: 104 CPLCRHEFKTDD 115
CPLC+ + +
Sbjct: 60 CPLCKTSVRKNA 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila
melanogaster}
Length = 381
Score = 50.6 bits (120), Expect = 2e-08
Identities = 15/88 (17%), Positives = 23/88 (26%), Gaps = 16/88 (18%)
Query: 42 ELPPPASKAFVKSLQEVTSHEPESSCPICLKLFLVGESAKK-----LDCKHTFHSTCILP 96
+L + + E C IC L G C H+ C+
Sbjct: 286 DLCYFPMPDWSDGPKLDEEDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEE 345
Query: 97 WLEKTS-----------TCPLCRHEFKT 113
W + CP C+ + T
Sbjct: 346 WFKTLMDGKTFLEVSFGQCPFCKAKLST 373
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; HET: MSE; 2.29A {Homo
sapiens}
Length = 100
Score = 47.6 bits (113), Expect = 3e-08
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 56 QEVTSHEPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKT-STCPLCRHEFKTD 114
Q V S C IC++ ++ C +CI WL + + CP CR +
Sbjct: 14 QSVESIAEVFRCFICMEKLR--DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71
Query: 115 D 115
+
Sbjct: 72 E 72
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex,
chimera; 2.21A {Rattus norvegicus}
Length = 133
Score = 47.9 bits (113), Expect = 4e-08
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 62 EPESSCPICLKLFLVGESAKK----LDCKHTFHSTCILPWLEKTSTCPLCRHEFKTDDAD 117
SCPIC+ + + +C H F S C+ L+ +TCP CR +
Sbjct: 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYH 64
Query: 118 Y 118
Sbjct: 65 P 65
Score = 37.8 bits (87), Expect = 2e-04
Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 4/76 (5%)
Query: 44 PPPASKAFVKSLQEVTSHEPESSCPICLKLF----LVGESAKKLDCKHTFHSTCILPWLE 99
P K K + SCPIC+ + G +C H F S C+ L+
Sbjct: 52 PTCRKKINHKRYHPIYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK 111
Query: 100 KTSTCPLCRHEFKTDD 115
+TCP CR +
Sbjct: 112 NANTCPTCRKKINHKR 127
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA
complex, DNA-binding protein- complex; HET: DNA 3DR;
5.93A {Mus musculus}
Length = 117
Score = 47.5 bits (112), Expect = 5e-08
Identities = 12/57 (21%), Positives = 17/57 (29%)
Query: 56 QEVTSHEPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFK 112
+ + C H FH CI WL+ CPL E++
Sbjct: 55 RNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus
interaction, receptor, UBL conjugation, UBL conjugation
pathway, acetylation, cytoplasm; 2.60A {Homo sapiens}
SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D
4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Length = 106
Score = 47.1 bits (111), Expect = 6e-08
Identities = 12/57 (21%), Positives = 17/57 (29%)
Query: 56 QEVTSHEPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFK 112
+ + C H FH CI WL+ CPL E++
Sbjct: 44 RNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 66
Score = 45.9 bits (109), Expect = 6e-08
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 10/70 (14%)
Query: 47 ASKAFVKSLQEVTSHEPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWL-EKTSTCP 105
S FVK++ E + C C + S K+ +C H F +C+ L + C
Sbjct: 4 GSSGFVKTV------EDKYKCEKCHLVL---CSPKQTECGHRFCESCMAALLSSSSPKCT 54
Query: 106 LCRHEFKTDD 115
C+ D
Sbjct: 55 ACQESIVKDK 64
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA
damage, chromatin regulator, chromosomal protein, DNA
repair, metal-binding; 2.12A {Homo sapiens}
Length = 115
Score = 46.8 bits (111), Expect = 8e-08
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 56 QEVTSHEPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTS-TCPLCRHEF 111
++ E C IC+++ + L C HT C +EK S CP CR
Sbjct: 7 KDAIPSLSECQCGICMEILV---EPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRV 60
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein
of testis, proliferation potential-related protein,
protein P2P-R; NMR {Homo sapiens}
Length = 74
Score = 45.5 bits (108), Expect = 9e-08
Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 6/58 (10%)
Query: 62 EPESSCPICLKLFLVGESAKKL-DCKHTFHSTCILPWLEK--TSTCPLCRHEFKTDDA 116
E C IC + A + C +++ CI L + TCP C + DA
Sbjct: 13 PDELLCLICKDIM---TDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDA 67
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite
motif protein 34, interferon- responsive finger protein
1; NMR {Homo sapiens}
Length = 79
Score = 45.3 bits (108), Expect = 1e-07
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 16/76 (21%)
Query: 47 ASKAFVKSLQEVTSHEPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTST--- 103
S ++QE E +CPICL+L LDC H+ CI ++ T
Sbjct: 1 GSSGSSGNVQE------EVTCPICLELL---TEPLSLDCGHSLCRACITVSNKEAVTSMG 51
Query: 104 ----CPLCRHEFKTDD 115
CP+C + +
Sbjct: 52 GKSSCPVCGISYSFEH 67
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin
ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB:
2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A
2ldr_A*
Length = 389
Score = 47.8 bits (113), Expect = 2e-07
Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 61 HEPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTS-TCPLCRHEFKTDD 115
C IC + + K C H ++C+ W E CP CR E K +
Sbjct: 329 GSTFQLCKICAEND---KDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc
binuclear cluster, zinc finger, DNA-binding protein;
2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Length = 116
Score = 46.1 bits (109), Expect = 2e-07
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 62 EPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLE-KTSTCPLCRHEFKTDD 115
SC IC + + CKH F CIL L+ S CP CR+ D
Sbjct: 21 VKSISCQICEHIL---ADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 117
Score = 45.7 bits (108), Expect = 2e-07
Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 4/73 (5%)
Query: 43 LPPPASKAFVKSLQEVTSHEPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTS 102
+ P A+ S + E C C + E C+H F S C+ + +
Sbjct: 1 MEPDGRGAWAHSRAALDRLEKLLRCSRCTNIL--REPVCLGGCEHIFCSNCVSDCIG--T 56
Query: 103 TCPLCRHEFKTDD 115
CP+C D
Sbjct: 57 GCPVCYTPAWIQD 69
>1z6u_A NP95-like ring finger protein isoform B; structural genomics
consortium, ligase, ubiquitin-protein ligase, cell cycle
regulation, SGC; 2.10A {Homo sapiens}
Length = 150
Score = 45.8 bits (108), Expect = 3e-07
Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 10/72 (13%)
Query: 46 PASKAFVKSLQEVTSHEPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEK-TSTC 104
F+K L++ C C +L +C H C+ + +C
Sbjct: 66 VEGPNFLKKLEQ------SFMCVCCQELV---YQPVTTECFHNVCKDCLQRSFKAQVFSC 116
Query: 105 PLCRHEFKTDDA 116
P CRH+ +
Sbjct: 117 PACRHDLGQNYI 128
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase,
nuclear protein, chromosomal protein, transcription
regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Length = 165
Score = 45.7 bits (108), Expect = 5e-07
Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 13/89 (14%)
Query: 62 EPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEK-TSTCPLCRHEFKT------- 113
E CPICL + + +C H F + CI+ L CP CR + +
Sbjct: 52 HSELMCPICLDML--KNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPD 109
Query: 114 ---DDADYEAYKVQKKREKEREGEIENLH 139
D + Y + + E +E + ++
Sbjct: 110 PNFDALISKIYPSRDEYEAHQERVLARIN 138
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing,
mRNA splicing; NMR {Homo sapiens}
Length = 92
Score = 43.6 bits (103), Expect = 7e-07
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 6/57 (10%)
Query: 62 EPESSCPICLKLFLVGESAKKLD-CKHTFHSTCILPWLEK--TSTCPLCRHEFKTDD 115
E C IC + A + C +++ CI L + TCP C + D
Sbjct: 11 PDELLCLICKDIM---TDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 64
>2ecv_A Tripartite motif-containing protein 5; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 43.4 bits (103), Expect = 8e-07
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 15/78 (19%)
Query: 44 PPPASKAFVKSLQEVTSHEPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEK--- 100
+ + +++E E +CPICL+L LDC H+F C+ +K
Sbjct: 5 SSGMASGILVNVKE------EVTCPICLELL---TQPLSLDCGHSFCQACLTANHKKSML 55
Query: 101 ---TSTCPLCRHEFKTDD 115
S+CP+CR ++ ++
Sbjct: 56 DKGESSCPVCRISYQPEN 73
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA
repair, ring finger domain, metal binding, DNA
replication; 1.75A {Homo sapiens}
Length = 124
Score = 44.2 bits (104), Expect = 9e-07
Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 10/70 (14%)
Query: 44 PPPASKAFVKSLQEVTSHEPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTS- 102
+ F+ ++E C C +L C+H C+
Sbjct: 38 SGSPFQLFLSKVEE------TFQCICCQELV---FRPITTVCQHNVCKDCLDRSFRAQVF 88
Query: 103 TCPLCRHEFK 112
+CP CR++
Sbjct: 89 SCPACRYDLG 98
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.10A {Homo sapiens} PDB:
3hcu_A 2eci_A 2jmd_A
Length = 118
Score = 44.0 bits (104), Expect = 9e-07
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 62 EPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWL-EKTSTCPLCRHEFKTDD 115
E + CPICL A + C H F CI+ + + CP+ +
Sbjct: 16 ESKYECPICLMAL---REAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67
>2ecw_A Tripartite motif-containing protein 30; metal binding protein,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 85
Score = 43.1 bits (102), Expect = 1e-06
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 15/68 (22%)
Query: 50 AFVKSLQEVTSHEPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEK------TST 103
+ ++ ++E E +CPICL+L + DC H+F CI E
Sbjct: 11 SVLEMIKE------EVTCPICLELL---KEPVSADCNHSFCRACITLNYESNRNTDGKGN 61
Query: 104 CPLCRHEF 111
CP+CR +
Sbjct: 62 CPVCRVPY 69
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 112
Score = 42.8 bits (101), Expect = 2e-06
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 16/71 (22%)
Query: 50 AFVKSLQEVTSHEPESSCPICLKLFL--VGESAKKLDCKHTFHSTCILPWLEK---TSTC 104
+ ++Q+ CPICL+L V C H F C+L L + S C
Sbjct: 13 NVINAMQK------ILECPICLELIKEPV-----STKCDHIFCKFCMLKLLNQKKGPSQC 61
Query: 105 PLCRHEFKTDD 115
PLC+++
Sbjct: 62 PLCKNDITKRS 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3
ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Length = 238
Score = 44.3 bits (104), Expect = 3e-06
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 67 CPICLKLFLVGESAKKLDCKHTFHSTCILPWLEK--TSTCPLCRHEF 111
C IC L + G+S + C H C+ + + CP C +
Sbjct: 183 CNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 227
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 63
Score = 41.2 bits (97), Expect = 4e-06
Identities = 24/64 (37%), Positives = 27/64 (42%), Gaps = 12/64 (18%)
Query: 47 ASKAFVKSLQEVTSHEPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLE---KTST 103
AS FV LQE E CPICL + + +DC H F CI E
Sbjct: 9 ASGQFVNKLQE------EVICPICLDIL---QKPVTIDCGHNFCLKCITQIGETSCGFFK 59
Query: 104 CPLC 107
CPLC
Sbjct: 60 CPLC 63
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative
splicing, apoptosis, cytoplasm, metal-binding, UBL
conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Length = 141
Score = 42.8 bits (100), Expect = 4e-06
Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 4/73 (5%)
Query: 67 CPICLKLFLVGESAKKLDCKHTFHSTCILPWLEK-TSTCPLCRHEFKTDDADYEAYKVQK 125
C C + + C H + S C+ L C C HE ++
Sbjct: 34 CSACRNVL---RRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSA 90
Query: 126 KREKEREGEIENL 138
+ E+E+L
Sbjct: 91 FPDNAARREVESL 103
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 58
Score = 40.4 bits (95), Expect = 7e-06
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 12/66 (18%)
Query: 45 PPASKAFVKSLQEVTSHEPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLE---KT 101
S +++LQ E+SC +CL+ + ++C H F CI W E +
Sbjct: 2 SSGSSGALENLQV------EASCSVCLEYL---KEPVIIECGHNFCKACITRWWEDLERD 52
Query: 102 STCPLC 107
CP+C
Sbjct: 53 FPCPVC 58
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT-
interacting protein, ring domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 40.8 bits (96), Expect = 9e-06
Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 66 SCPICLKLF-LVGESAKKLDCKHTFHSTCILPWLEKTS---TCPLCRHEFKTDDAD 117
CPIC++ F K L C HT C+ L + CP C +
Sbjct: 17 ECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLT 72
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.3 bits (99), Expect = 2e-05
Identities = 29/138 (21%), Positives = 41/138 (29%), Gaps = 50/138 (36%)
Query: 4 YFDEFNIAPLGPGETPNHML------HLARLLRDFG----MNPYEFNDEL------PPPA 47
Y +A + N L A+L+ FG + Y F +EL
Sbjct: 126 YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY-F-EELRDLYQTYHVL 183
Query: 48 SKAFVKS----LQEVTSHEPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTST 103
+K L E+ ++ K+F G L+ IL WLE S
Sbjct: 184 VGDLIKFSAETLSELIRTTLDAE-----KVFTQG-----LN---------ILEWLENPSN 224
Query: 104 CPLCRHEFKTDDADYEAY 121
P D DY
Sbjct: 225 TP---------DKDYLLS 233
Score = 42.3 bits (99), Expect = 2e-05
Identities = 27/139 (19%), Positives = 44/139 (31%), Gaps = 51/139 (36%)
Query: 16 GE-TPNHMLHLARLLRDFGMNPY--EFNDELPPP---------ASKAFVKSLQEVTSHEP 63
E P+ ML ++ L ++ + Y + N LP +K V V+ P
Sbjct: 331 NEGVPSPMLSISNLTQEQ-VQDYVNKTNSHLPAGKQVEISLVNGAKNLV-----VSGP-P 383
Query: 64 ESSCPICLKL---------------FLVGESAKKLDCKHTF-------HSTCILPWLEKT 101
+S + L L F S +KL + F HS L
Sbjct: 384 QSLYGLNLTLRKAKAPSGLDQSRIPF----SERKLKFSNRFLPVASPFHS----HLLVPA 435
Query: 102 STCPLCRHEFKTDDADYEA 120
S L + ++ + A
Sbjct: 436 S--DLINKDLVKNNVSFNA 452
Score = 33.1 bits (75), Expect = 0.023
Identities = 20/92 (21%), Positives = 32/92 (34%), Gaps = 23/92 (25%)
Query: 12 PL----GPGET----PNHMLHLARLLRDFGMNPYEFNDELPPPASKAFVKSLQEVTSHEP 63
PL G E P +A L++ +FN LP P ++ F EP
Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIASQLQE------QFNKILPEP-TEGFAA------DDEP 54
Query: 64 ESSCPICLKLFLVGESAKKLDCKHTFHSTCIL 95
+ + K FL G + ++ +L
Sbjct: 55 TTPAELVGK-FL-GYVSSLVEPSKVGQFDQVL 84
Score = 27.7 bits (61), Expect = 1.8
Identities = 22/111 (19%), Positives = 36/111 (32%), Gaps = 23/111 (20%)
Query: 3 DYFDEFNIAPL-GPGETPNHMLHLARLLRDFGMNPYEFNDELPPPASKAFVKSLQEVT-- 59
DY P+ P + H + G P E L + + L VT
Sbjct: 229 DYLLS---IPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYL--KGATGHSQGL--VTAV 281
Query: 60 ----SHEPES---SCPICLK-LFLVGESAKKLDCKHTFHSTCILPWLEKTS 102
+ ES S + LF +G + C + +T + P + + S
Sbjct: 282 AIAETDSWESFFVSVRKAITVLFFIG-----VRCYEAYPNTSLPPSILEDS 327
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS),
leukemia, transcription regulation; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 56
Score = 39.3 bits (92), Expect = 2e-05
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 8/47 (17%)
Query: 66 SCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTS-TCPLCRHEF 111
C C + K L C HT S C LE + CP+C+ +
Sbjct: 8 RCQQCQAEA---KCPKLLPCLHTLCSGC----LEASGMQCPICQAPW 47
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional
control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Length = 78
Score = 39.7 bits (92), Expect = 2e-05
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 60 SHEPESSCPICL-KLFLVGESAKKLDCKHTFHSTCILPWL-EKTSTCPLCRHEFKTDDAD 117
+ E CP+C+ L + + C + C ++ CP CR + D A
Sbjct: 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAV 66
Query: 118 Y 118
Y
Sbjct: 67 Y 67
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 41.2 bits (96), Expect = 2e-05
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 4/55 (7%)
Query: 62 EPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLE-KTSTCPLCRHEFKTDD 115
E + CPICL A + C H F CI+ + CP+ +
Sbjct: 16 ESKYECPICLMAL---REAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring,
ATP-binding, chromosomal protein, coiled coil, DNA
damage; 2.31A {Saccharomyces cerevisiae}
Length = 267
Score = 41.1 bits (95), Expect = 3e-05
Identities = 22/118 (18%), Positives = 37/118 (31%), Gaps = 7/118 (5%)
Query: 2 SDYFDEFNIAPLGPGETPNHMLHLARLLRDFGMNPYEFNDELPPPASKAFVKSLQEVTSH 61
+ + P T + ++L+ + +P + A LQ +
Sbjct: 120 PKLSELYLNMPTPEPATMVNNTDTLKILKVLPYIWNDPTCVIPDLQNPADEDDLQ-IEGG 178
Query: 62 EPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEK--TSTCPL--CRHEFKTDD 115
+ E +CPI K + C H F I +L+ T CP C D
Sbjct: 179 KIELTCPITCKPYE--APLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRD 234
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase;
1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB:
1n87_A
Length = 61
Score = 36.9 bits (86), Expect = 1e-04
Identities = 7/49 (14%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 67 CPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTDD 115
C I K+ + K + F + + +++ T P+ ++
Sbjct: 6 CAISGKVPRRPVLSPK--SRTIFEKSLLEQYVKDTGNDPITNEPLSIEE 52
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 35.3 bits (81), Expect = 0.001
Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 12/69 (17%)
Query: 54 SLQEVTSHEPESSCPICLKLFLVGESAKKL----DCK---HTFHSTCILPWLE--KTSTC 104
S + + C IC G+ L C H H C+ W++ T C
Sbjct: 5 SSGTSITPSSQDICRIC---HCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCC 61
Query: 105 PLCRHEFKT 113
LC++EF
Sbjct: 62 ELCKYEFIM 70
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 31.5 bits (71), Expect = 0.024
Identities = 18/83 (21%), Positives = 26/83 (31%), Gaps = 19/83 (22%)
Query: 67 CPICLKLFLVGESAKKLDCKHTFHSTCILPWLE------KTSTCPL--CRHEFKTDDA-- 116
CPI + K C HT+ I+ +E K + CP C H
Sbjct: 10 CPITKEEMKKPVKNKV--CGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLI 67
Query: 117 -DY------EAYKVQKKREKERE 132
D E + ++ R E
Sbjct: 68 QDEALRRAIENHNKKRHRHSESG 90
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace
motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Length = 60
Score = 30.5 bits (69), Expect = 0.038
Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 14/61 (22%)
Query: 62 EPESSCPICLKLFLVGESAKKL----DCKHTF---HSTCILPWLE--KTSTCPLCRHEFK 112
E C IC E + C H +C+ WL + + C +C +
Sbjct: 4 EDVPVCWICN-----EELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58
Query: 113 T 113
T
Sbjct: 59 T 59
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein
4, UIP4, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: g.44.1.1
Length = 94
Score = 30.2 bits (68), Expect = 0.067
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 62 EPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLE 99
S C +CL + V + C+ F + C+ ++E
Sbjct: 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVE 40
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL
conjugation pathway, DNA damage, nucleus,
phosphoprotein; HET: 1PE; 2.40A {Saccharomyces
cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Length = 968
Score = 31.7 bits (71), Expect = 0.067
Identities = 21/95 (22%), Positives = 31/95 (32%), Gaps = 8/95 (8%)
Query: 27 RLLRDFGMNPYEFNDELPPPASKA------FVKSLQEVTSHEPESSCPICLKLFLVGESA 80
L R G+ EF ++L A+KA + E E P+ + +
Sbjct: 848 ILGRKTGLASPEFIEKLLNFANKAEEQRKADEEEDLEYGDVPDEFLDPLMYTIMK--DPV 905
Query: 81 KKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTDD 115
K + I L ST P R K +D
Sbjct: 906 ILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLED 940
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4),
metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 65
Score = 29.9 bits (67), Expect = 0.068
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 64 ESSCPICLKLFLVGESAKKL--DCKHTFHSTCILPWLEKTS-TCPLCRHEFK 112
+ CP C S K + C HT +C+ + + CP C +
Sbjct: 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding
domain; 1.90A {Mus musculus}
Length = 101
Score = 29.8 bits (66), Expect = 0.12
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 67 CPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKT-STCPLCR 108
C C V + + CKH F C + +K CP C
Sbjct: 4 CDKCGLPIKVY--GRMIPCKHVFCYDCAILHEKKGDKMCPGCS 44
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase,
UBL conjugation pathway; NMR {Mus musculus}
Length = 85
Score = 28.1 bits (63), Expect = 0.45
Identities = 9/49 (18%), Positives = 13/49 (26%), Gaps = 3/49 (6%)
Query: 67 CPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTDD 115
P+ L +L + IL L + T P R
Sbjct: 17 DPLMDTLM---TDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESM 62
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL
protein transport, transport, cytoplasm, GTPase
activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
PDB: 2l1l_B
Length = 1049
Score = 29.1 bits (64), Expect = 0.52
Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 4/89 (4%)
Query: 17 ETPNHMLHLARLLRDFGMNPYEFNDELPPPASKAFVKSLQEVTSHE----PESSCPICLK 72
E P H + +LL+ + ELPP A K FV ++ H + I L
Sbjct: 816 EYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALD 875
Query: 73 LFLVGESAKKLDCKHTFHSTCILPWLEKT 101
L E + + FH ++ +T
Sbjct: 876 LVKNIERMGNVPFANEFHKNYFFIFVSET 904
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin
ligase, E4 polyubiquitin chain EL factor,
phosphoprotein, UBL conjugation pathway; NMR {Homo
sapiens} PDB: 3l1x_A 3l1z_B
Length = 100
Score = 27.0 bits (60), Expect = 1.1
Identities = 9/49 (18%), Positives = 13/49 (26%), Gaps = 3/49 (6%)
Query: 67 CPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTDD 115
P+ L +L + IL L + T P R
Sbjct: 32 DPLMDTLM---TDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESM 77
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex;
2.3A {Homo sapiens} SCOP: a.118.1.19
Length = 321
Score = 27.6 bits (61), Expect = 1.4
Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 2/85 (2%)
Query: 17 ETPNHMLHLARLLRDFGMNPYEFNDELPPPASKAFVKSLQEVTSHEPESSCPICLKLF-- 74
E P H + LL+ + + +PP K + S+ H + L++
Sbjct: 134 EYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFT 193
Query: 75 LVGESAKKLDCKHTFHSTCILPWLE 99
L+ A++ +F+ T L+
Sbjct: 194 LLQNVAQEEAAAQSFYQTYFCDILQ 218
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative
splicing, HOST-virus interaction, UBL conjugation
pathway, zinc-finger, polymorphism; HET: FLC; 2.20A
{Homo sapiens} PDB: 2vjf_B*
Length = 63
Score = 26.0 bits (57), Expect = 1.4
Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 12/60 (20%)
Query: 59 TSHEPESSCPICLK-----LFLVGESAKKLDCKHTFH-STCILPWLEKTSTCPLCRHEFK 112
C +C K + G H C + ++CP+C+ E +
Sbjct: 2 DCQNLLKPCSLCEKRPRDGNIIHGR------TGHLVTCFHCARRLKKAGASCPICKKEIQ 55
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate,
PLP, lyase; HET: PLP; 2.50A {Mycobacterium
tuberculosis}
Length = 360
Score = 27.3 bits (61), Expect = 1.9
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 6 DEFNIAPLGPGETPNHMLHLARLLRDFGMNPY 37
D++ L G TP ++ L + G +
Sbjct: 27 DDWTPVTLLEGGTP--LIAATNLSKQTGCTIH 56
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: g.50.1.1
Length = 134
Score = 26.4 bits (57), Expect = 2.5
Identities = 10/63 (15%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 52 VKSLQEVTSHEPESSCPICLKLFLVGESAKKL--DCKHTFHSTCILPWL----EKTSTCP 105
++++++ + + + C +C + + SA + DCK + C + C
Sbjct: 43 LETMRKNVAGDGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCK 102
Query: 106 LCR 108
+C
Sbjct: 103 ICL 105
>3ltx_A Estrogen receptor; constitutive, nuclear receptor, DNA-binding,
metal-binding, nucleus, transcription, transcription
regulation, zinc-finger; 2.60A {Crassostrea gigas}
Length = 243
Score = 26.6 bits (59), Expect = 2.9
Identities = 8/62 (12%), Positives = 22/62 (35%), Gaps = 9/62 (14%)
Query: 5 FDEFNIAPLGPGETPNHMLHLARLLRDFGMNPYE---------FNDELPPPASKAFVKSL 55
D + + + E + ++ + ++ E N E+ AS + ++
Sbjct: 106 LDRSSWSTVEMTEIFEQVAAVSEQMMQNHLHKDELLLLQAMVLVNAEVRRLASYNQIFNM 165
Query: 56 QE 57
Q+
Sbjct: 166 QQ 167
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger,
transferase-structural protein; 1.47A {Homo sapiens}
PDB: 2ln0_A
Length = 112
Score = 25.8 bits (56), Expect = 3.8
Identities = 12/51 (23%), Positives = 16/51 (31%), Gaps = 6/51 (11%)
Query: 61 HEPESSCPICLKLFLVGESAKK------LDCKHTFHSTCILPWLEKTSTCP 105
EP C CL K DC ++ H +C+ E T
Sbjct: 2 MEPIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVK 52
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 56
Score = 24.6 bits (54), Expect = 3.9
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 85 CKHTFHSTCILPWLEKTST----CPLCRHE 110
C +H C+ P L+ CP C+ +
Sbjct: 27 CSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 56
>3oql_A TENA homolog; transcriptional activator, structural genomics, joint
center structural genomics, JCSG, protein structure
initiative; 2.54A {Pseudomonas syringae PV}
Length = 262
Score = 26.3 bits (57), Expect = 4.1
Identities = 6/44 (13%), Positives = 14/44 (31%)
Query: 20 NHMLHLARLLRDFGMNPYEFNDELPPPASKAFVKSLQEVTSHEP 63
NH + + + +D+ P A + +S +
Sbjct: 104 NHADYWVNWCAAHDVTLEDLHDQRVAPELHALSHWCWQTSSSDS 147
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid
decarboxylase, X-RAY diffraction, structural genomics,
NPPSFA; 2.15A {Aquifex aeolicus}
Length = 189
Score = 26.0 bits (57), Expect = 4.1
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 9/58 (15%)
Query: 7 EFNIAPLGPGETPNHMLHLARL--LRDFGMNPYEFNDELPP-PASKAFVKSLQEVTSH 61
E L E P + +HL + + G +P PA +S+ ++ +
Sbjct: 117 ERVPLVLLVREAPYNEIHLENMLKITRMG------GVVVPASPAFYHKPQSIDDMINF 168
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP;
3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Length = 458
Score = 26.2 bits (58), Expect = 4.6
Identities = 4/18 (22%), Positives = 11/18 (61%)
Query: 19 PNHMLHLARLLRDFGMNP 36
P+ ++ L++ + + G P
Sbjct: 321 PDEIIALSKFIIELGAIP 338
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase
cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A
{Azotobacter vinelandii}
Length = 483
Score = 26.3 bits (58), Expect = 4.7
Identities = 4/18 (22%), Positives = 6/18 (33%)
Query: 19 PNHMLHLARLLRDFGMNP 36
+ L+D GM
Sbjct: 341 GVKSWSVVSALQDLGMKV 358
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.44.1.2
Length = 98
Score = 25.1 bits (55), Expect = 4.7
Identities = 7/32 (21%), Positives = 9/32 (28%)
Query: 84 DCKHTFHSTCILPWLEKTSTCPLCRHEFKTDD 115
+ T + I L T P R D
Sbjct: 40 SSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQ 71
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 25.7 bits (55), Expect = 5.2
Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 12/71 (16%)
Query: 46 PASKAFVKSLQEVTSHEPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCP 105
+++ L + CP+CL F S K+ E T CP
Sbjct: 57 LDESSYLYRLLASKAISQ-FVCPLCLMPFSSSVSLKQHIRYT-----------EHTKVCP 104
Query: 106 LCRHEFKTDDA 116
+C+ EF + D+
Sbjct: 105 VCKKEFTSTDS 115
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 25.8 bits (56), Expect = 5.3
Identities = 6/25 (24%), Positives = 8/25 (32%)
Query: 96 PWLEKTSTCPLCRHEFKTDDADYEA 120
P L TCP C+ +
Sbjct: 16 PNLNIVLTCPECKVYPPKIVERFSE 40
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen
fixation, nitrogen metabolism, molybdoenzymes, electron
transfer; HET: HCA CFM CLF; 1.60A {Klebsiella
pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Length = 519
Score = 25.9 bits (57), Expect = 6.2
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 19 PNHMLHLARLLRDFGMNP 36
P+ ++ L R L + G P
Sbjct: 369 PDFVMGLTRFLLELGCEP 386
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta,
PHD, protein binding, peptide binding metal binding
protein; NMR {Homo sapiens}
Length = 61
Score = 24.3 bits (53), Expect = 6.7
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 85 CKHTFHSTCILPWLEKTST----CPLCRHE 110
C +H C+ P +EK CP C E
Sbjct: 29 CPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD
domain, histone-lysine N-methyltransferase, H3 lysine-4
specific MLL3; NMR {Homo sapiens}
Length = 111
Score = 24.9 bits (54), Expect = 6.9
Identities = 7/45 (15%), Positives = 16/45 (35%), Gaps = 6/45 (13%)
Query: 59 TSHEPESSCPICLKLFLVGESAKKL---DCKHTFHSTCILPWLEK 100
+S ++C +C G+ + C +H C+ +
Sbjct: 2 SSGSSGANCAVCDS---PGDLLDQFFCTTCGQHYHGMCLDIAVTP 43
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann
fold domains, reductase, nitrogen fixing,
oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter
vinelandii} PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B*
1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B*
3k1a_B* 3min_B*
Length = 523
Score = 25.9 bits (57), Expect = 7.1
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 19 PNHMLHLARLLRDFGMNP 36
P+ ++ L + L + G P
Sbjct: 373 PDFVMGLVKFLLELGCEP 390
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann
fold domains, reductase, nitrogen fixing,
oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter
vinelandii} PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A*
1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A*
3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Length = 492
Score = 25.6 bits (56), Expect = 7.7
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 19 PNHMLHLARLLRDFGMNP 36
H+ D GM
Sbjct: 357 GLRPRHVIGAYEDLGMEV 374
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation,
alternative splicing, HOST-virus interaction, UBL
conjugation pathway, zinc-finger, polymorphism; HET:
FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Length = 64
Score = 24.0 bits (52), Expect = 7.9
Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 15/62 (24%)
Query: 60 SHEPESS---CPICLK-----LFLVGESAKKLDCKHTFH-STCILPWLEKTSTCPLCRHE 110
S P ++ C IC + G H TC ++ CP+CR
Sbjct: 1 SSLPLNAIEPCVICQGRPKNGCIVHG------KTGHLMACFTCAKKLKKRNKPCPVCRQP 54
Query: 111 FK 112
+
Sbjct: 55 IQ 56
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor
protein, phosphorylation, cell; HET: TPO; 2.70A {Homo
sapiens}
Length = 656
Score = 25.5 bits (55), Expect = 7.9
Identities = 3/22 (13%), Positives = 10/22 (45%)
Query: 23 LHLARLLRDFGMNPYEFNDELP 44
L ++ ++ ++F + L
Sbjct: 66 FTFTELQKNIEISVHKFFNLLK 87
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.422
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,190,751
Number of extensions: 115062
Number of successful extensions: 596
Number of sequences better than 10.0: 1
Number of HSP's gapped: 501
Number of HSP's successfully gapped: 121
Length of query: 144
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 59
Effective length of database: 4,328,508
Effective search space: 255381972
Effective search space used: 255381972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.2 bits)