RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12643
(144 letters)
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 60.3 bits (146), Expect = 5e-14
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 60 SHEPESSCPICLKLFLVGESAKKL-DCKHTFHSTCILPWLEKTSTCPLCRHE 110
+ + C +CL GE A+ L C H FH+ C+ WL STCPLCR
Sbjct: 1 AMDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLT 52
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 60.3 bits (146), Expect = 6e-14
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 67 CPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKT------DDADYEA 120
CPICL+ + L C H F CI W+ + TCPLC+ ++ D+++
Sbjct: 8 CPICLEDP--SNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVVHTIESDSEFGD 65
Query: 121 YKV 123
+
Sbjct: 66 QLI 68
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 51.5 bits (123), Expect = 2e-10
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 67 CPICLKLFLVGESAKKLDCKHTFHSTCILPWLE-KTSTCPLCRHEFKTDD 115
C IC + + K C H ++C+ W E + CP CR E K +
Sbjct: 26 CKICAEND---KDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 72
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 50.1 bits (119), Expect = 8e-10
Identities = 15/65 (23%), Positives = 21/65 (32%), Gaps = 15/65 (23%)
Query: 63 PESSCPICLKLFL---------------VGESAKKLDCKHTFHSTCILPWLEKTSTCPLC 107
+C IC + + C H FH CI WL+ CPL
Sbjct: 20 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 79
Query: 108 RHEFK 112
E++
Sbjct: 80 NREWE 84
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1
(RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 47.2 bits (112), Expect = 1e-08
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 66 SCPICLKLFLVGESAKKLDCKHTFHSTCILPWLE-KTSTCPLCRHEFKTDD 115
SC IC + + CKH F CIL L+ S CP CR+ D
Sbjct: 25 SCQICEHIL---ADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72
Score = 23.3 bits (50), Expect = 8.2
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 5/34 (14%)
Query: 84 DCKHTFHSTCILP-----WLEKTSTCPLCRHEFK 112
+C ST +L K+ +C +C H
Sbjct: 1 NCSKIHLSTKLLAVDFPAHFVKSISCQICEHILA 34
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 46.7 bits (110), Expect = 1e-08
Identities = 12/55 (21%), Positives = 18/55 (32%), Gaps = 3/55 (5%)
Query: 64 ESSCPICLKLFLVGESAKKL--DCKHTFHSTCILPWLE-KTSTCPLCRHEFKTDD 115
+ CP C S K + C HT +C+ CP C + +
Sbjct: 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 45.1 bits (106), Expect = 4e-08
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 66 SCPICLKLFLVGESA-KKLDCKHTFHSTCILPWLE-KTSTCPLCRHEFKTD 114
CP+C++ + + C + C + CP CR + D
Sbjct: 2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 52
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 45.8 bits (108), Expect = 5e-08
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 52 VKSLQEVTSHEPES-SCPICLKLFLVGESAKKLDCKHTFHSTCILPWLE---KTSTCPLC 107
V+ +Q V + + CPICL+L + C H F C+L L S CPLC
Sbjct: 8 VEEVQNVINAMQKILECPICLELI---KEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLC 64
Query: 108 RHEFKTDD 115
+++
Sbjct: 65 KNDITKRS 72
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 43.7 bits (103), Expect = 1e-07
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 6/45 (13%)
Query: 67 CPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEF 111
C C + K L C HT S C+ CP+C+ +
Sbjct: 9 CQQCQAEA---KCPKLLPCLHTLCSGCLEAS---GMQCPICQAPW 47
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
{Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
[TaxId: 37296]}
Length = 60
Score = 41.4 bits (96), Expect = 1e-06
Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 4/56 (7%)
Query: 62 EPESSCPICLKLFLVGE--SAKKLDCKHTFHSTCILPWLEKT--STCPLCRHEFKT 113
E C IC + + H +C+ WL + + C +C + T
Sbjct: 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 41.7 bits (97), Expect = 2e-06
Identities = 15/73 (20%), Positives = 23/73 (31%), Gaps = 4/73 (5%)
Query: 43 LPPPASKAFVKSLQEVTSHEPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTS 102
+ P A+ S + E C C + C+H F S C+ +
Sbjct: 1 MEPDGRGAWAHSRAALDRLEKLLRCSRCTNILREPVCL--GGCEHIFCSNCVSDCIGT-- 56
Query: 103 TCPLCRHEFKTDD 115
CP+C D
Sbjct: 57 GCPVCYTPAWIQD 69
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 41.6 bits (96), Expect = 3e-06
Identities = 16/80 (20%), Positives = 25/80 (31%), Gaps = 20/80 (25%)
Query: 52 VKSLQEVTSHEPESSCPICLKLFLVGESA---------------KKLDCKHTFHSTCILP 96
++ E PE C IC++ V + C H FH C+L
Sbjct: 13 IRKYTEELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLA 72
Query: 97 WLEK-----TSTCPLCRHEF 111
+ CP C+ +
Sbjct: 73 MYCNGNKDGSLQCPSCKTIY 92
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 56
Score = 37.4 bits (86), Expect = 3e-05
Identities = 6/49 (12%), Positives = 16/49 (32%), Gaps = 2/49 (4%)
Query: 67 CPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTDD 115
C I K+ + F + + +++ T P+ ++
Sbjct: 3 CAISGKVPR--RPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEE 49
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 37.8 bits (87), Expect = 5e-05
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 8/55 (14%)
Query: 62 EPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLE--------KTSTCPLCR 108
S C +CL + V + C+ F + C+ ++E +CP
Sbjct: 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA 57
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 33.1 bits (75), Expect = 0.002
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 67 CPICLKLFLVGESAKKLDCKHTFHSTCILPWLE-KTSTCPLCRHEFKTDD 115
CPI L+L + + T+ + I WL+ TCP +
Sbjct: 11 CPISLELM---KDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAG 57
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 70
Score = 27.3 bits (60), Expect = 0.24
Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 4/62 (6%)
Query: 62 EPESSCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTST----CPLCRHEFKTDDAD 117
+ S IC G+ C+ FH C LP L+ C LC + D
Sbjct: 2 TLDDSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLKEED 61
Query: 118 YE 119
+
Sbjct: 62 VD 63
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing
protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 27.5 bits (60), Expect = 0.26
Identities = 6/61 (9%), Positives = 14/61 (22%), Gaps = 3/61 (4%)
Query: 66 SCPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTSTCPLCRHEFKTDDADYEAYKVQK 125
I +L T+ I L++ T + +++
Sbjct: 9 CGKISFELM---REPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKE 65
Query: 126 K 126
Sbjct: 66 V 66
>d2idga1 a.184.1.1 (A:1-160) Hypothetical protein AF0160
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 160
Score = 26.1 bits (57), Expect = 1.4
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 78 ESAKKLDCKHTFHSTCILPWLEKTSTCPLCR--HEFKTDDADY 118
E K +H F + P ++ + PL +F +DA Y
Sbjct: 116 ELYKIRAAQHRFIKAHLQPLVKNLPSAPLLNFVRDFVREDAKY 158
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 25.5 bits (55), Expect = 1.9
Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 6/65 (9%)
Query: 52 VKSLQEVTSHEPESSCPICLKLF--LVGESAKKLDCKHTFHSTC----ILPWLEKTSTCP 105
++++++ + + + C +C + L S DCK + C C
Sbjct: 36 LETMRKNVAGDGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCK 95
Query: 106 LCRHE 110
+C +
Sbjct: 96 ICLEQ 100
>d1v7ra_ c.51.4.1 (A:) XTP pyrophosphatase {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 186
Score = 25.6 bits (55), Expect = 2.2
Identities = 11/91 (12%), Positives = 27/91 (29%), Gaps = 4/91 (4%)
Query: 25 LARLLRDFGMNPYEFNDELPPPASKAFVKSLQEVTSHEPESSCPICLKLFLVGESAKKLD 84
+A L FG+ + E P ++ ++V + F++ +S ++
Sbjct: 16 VANFLGTFGIEIVQLKHEYPEIQAEKL----EDVVDFGISWLKGKVPEPFMIEDSGLFIE 71
Query: 85 CKHTFHSTCILPWLEKTSTCPLCRHEFKTDD 115
F + + +D
Sbjct: 72 SLKGFPGVYSSYVYRTIGLEGILKLMEGAED 102
>d1exta3 g.24.1.1 (A:116-172) Tumor necrosis factor (TNF) receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 57
Score = 24.2 bits (52), Expect = 2.2
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 84 DCKHTFHSTCILPWLEKTSTCPLCRHEF 111
+C + T L EK +T C F
Sbjct: 1 NCSLCLNGTVHLSCQEKQNTVCTCHAGF 28
>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 321
Score = 24.8 bits (54), Expect = 4.3
Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 2/85 (2%)
Query: 17 ETPNHMLHLARLLRDFGMNPYEFNDELPPPASKAFVKSLQEVTSHEPESSCPICLKLF-- 74
E P H + LL+ + + +PP K + S+ H + L++
Sbjct: 134 EYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFT 193
Query: 75 LVGESAKKLDCKHTFHSTCILPWLE 99
L+ A++ +F+ T L+
Sbjct: 194 LLQNVAQEEAAAQSFYQTYFCDILQ 218
>d1mioa_ c.92.2.3 (A:) Nitrogenase iron-molybdenum protein, alpha
chain {Clostridium pasteurianum [TaxId: 1501]}
Length = 525
Score = 24.7 bits (53), Expect = 5.6
Identities = 3/18 (16%), Positives = 8/18 (44%)
Query: 19 PNHMLHLARLLRDFGMNP 36
+ +L+ FG++
Sbjct: 344 GSRSHTYMNMLKSFGVDS 361
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription
factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 23.0 bits (49), Expect = 6.0
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 67 CPICLKLFLVGESAKKLDCKHTFHSTCILPWLEKTST----CPLCRH 109
C +C K + +C FH C+ P L + CP C+
Sbjct: 3 CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 64
Score = 23.1 bits (49), Expect = 7.3
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 6/52 (11%)
Query: 67 CPICLKLFLVGESAKKLD-CKHTFHSTCILPWLEKTST-----CPLCRHEFK 112
C C + + E D C+ FH C+ + CP C ++
Sbjct: 9 CGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSG 60
>d1m1na_ c.92.2.3 (A:) Nitrogenase iron-molybdenum protein, alpha
chain {Azotobacter vinelandii [TaxId: 354]}
Length = 477
Score = 24.2 bits (52), Expect = 8.8
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 19 PNHMLHLARLLRDFGMNP 36
H+ D GM
Sbjct: 354 GLRPRHVIGAYEDLGMEV 371
>d1ezwa_ c.1.16.3 (A:) Coenzyme F420 dependent
tetrahydromethanopterin reductase {Archaeon
Methanopyrus kandleri [TaxId: 2320]}
Length = 347
Score = 23.9 bits (50), Expect = 9.4
Identities = 10/49 (20%), Positives = 17/49 (34%)
Query: 13 LGPGETPNHMLHLARLLRDFGMNPYEFNDELPPPASKAFVKSLQEVTSH 61
L P + P + HL ++ D G D + + +TS
Sbjct: 9 LLPDDKPTKIAHLIKVAEDNGFEYAWICDHYNNYSYMGVLTLAAVITSK 57
>d1rtta_ c.23.5.4 (A:) Hypothetical protein PA1204 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 174
Score = 23.5 bits (50), Expect = 9.5
Identities = 9/38 (23%), Positives = 14/38 (36%)
Query: 14 GPGETPNHMLHLARLLRDFGMNPYEFNDELPPPASKAF 51
G T HL + L ++P + + A AF
Sbjct: 113 GRFGTARAQYHLRQTLVFLDVHPLNKPEVMISSAQNAF 150
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.422
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 554,762
Number of extensions: 24103
Number of successful extensions: 141
Number of sequences better than 10.0: 1
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 37
Length of query: 144
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 67
Effective length of database: 1,350,386
Effective search space: 90475862
Effective search space used: 90475862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.2 bits)