Query psy12645
Match_columns 218
No_of_seqs 156 out of 1136
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 15:55:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12645.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12645hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_L Photosystem II reaction 41.2 47 0.0016 19.6 4.0 27 160-186 10-36 (37)
2 1d4b_A CIDE B, human cell deat 10.6 60 0.0021 24.4 0.2 23 92-114 95-121 (122)
3 3hi2_B Motility quorum-sensing 9.6 67 0.0023 23.3 0.1 19 22-40 3-22 (101)
4 2loo_A Transmembrane protein 1 10.9 83 0.0028 23.0 0.0 23 9-31 67-89 (108)
5 3ogl_Q JAZ1 incomplete degron 6.8 41 0.0014 17.6 -1.5 11 17-27 8-18 (21)
6 3ogk_Q JAZ1 incomplete degron 6.5 29 0.00098 18.4 -2.3 10 18-27 4-13 (22)
7 2los_A Transmembrane protein 1 7.7 1.3E+02 0.0045 22.4 0.0 24 8-31 75-98 (121)
8 2f8e_A VPG protein; RNA-depend 5.4 1.6E+02 0.0054 15.9 0.2 11 23-33 7-17 (26)
9 3h34_A Cytochrome C7, cytochro 5.0 1.7E+02 0.0058 19.3 0.3 23 93-117 2-24 (70)
10 1b4b_A Arginine repressor; cor 5.0 1.9E+02 0.0064 19.0 0.5 10 93-102 48-57 (71)
No 1
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=41.18 E-value=47 Score=19.61 Aligned_cols=27 Identities=11% Similarity=0.183 Sum_probs=22.4
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHH
Q psy12645 160 CDYPKAFAWWIGGHAVMFYFLFSNFYK 186 (218)
Q Consensus 160 C~~~~~~~~~~~~~~~s~l~LF~nFy~ 186 (218)
-+..+...+++........+||+++|.
T Consensus 10 VELNRTSLy~GLLlifvlavlFssyff 36 (37)
T 3arc_L 10 VELNRTSLYLGLLLILVLALLFSSYFF 36 (37)
T ss_dssp BCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceechhhHHHHHHHHHHHHHHhhhhcc
Confidence 345677889999999999999999875
No 2
>1d4b_A CIDE B, human cell death-inducing effector B; alpha/beta roll, apoptosis; NMR {Homo sapiens} SCOP: d.15.2.1
Probab=10.58 E-value=60 Score=24.39 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=16.4
Q ss_pred hhheeeeeecCC----CceeEEeeecc
Q psy12645 92 FDTFFFVMRKKY----DQVSTLHVIHH 114 (218)
Q Consensus 92 ~DTvf~VLRKK~----~qlsFLHvYHH 114 (218)
=+|+|+||++.+ .+..-||--||
T Consensus 95 ~nT~lmvL~~gq~W~p~~~~~~~~~~~ 121 (122)
T 1d4b_A 95 DDTCLMVLQSGQSWSPTRSGVLHHHHH 121 (122)
T ss_dssp SCCCCCEECSSCCCCCCCCSCCTTCCC
T ss_pred CCCEEEEecCCCcccCCCcceeeeccC
Confidence 589999999984 13555776555
No 3
>3hi2_B Motility quorum-sensing regulator MQSR; toxin-antitoxin system, Zn-binding protein, MQSA, YGIU B3022, B3021, stress response; 2.00A {Escherichia coli k-12}
Probab=9.56 E-value=67 Score=23.33 Aligned_cols=19 Identities=16% Similarity=0.200 Sum_probs=12.8
Q ss_pred ccCCCCC-ccchhHHHHHHH
Q psy12645 22 LGRDRPS-YSLQAIIIIINV 40 (218)
Q Consensus 22 ~Mk~Rkp-~~Lk~~l~~yN~ 40 (218)
-|++|+| ++|..+-.+=..
T Consensus 3 ~MEKrtPhy~L~~ik~l~~~ 22 (101)
T 3hi2_B 3 HMEKRTPHTRLSQVKKLVNA 22 (101)
T ss_dssp -CEESSCSSCHHHHHHHHHT
T ss_pred cCccCCCCCcHHHHHHHHHc
Confidence 4888888 788777655544
No 4
>2loo_A Transmembrane protein 14A; helical bundle; NMR {Homo sapiens} PDB: 2lop_A
Probab=10.87 E-value=83 Score=22.97 Aligned_cols=23 Identities=9% Similarity=0.049 Sum_probs=19.1
Q ss_pred eccccccccccccccCCCCCccc
Q psy12645 9 DSSFKPGRDSSFKLGRDRPSYSL 31 (218)
Q Consensus 9 ~~~~~~~~~~~~~~Mk~Rkp~~L 31 (218)
.+|.++....++|+.+.|||+.-
T Consensus 67 ~~S~~L~~~m~~R~~~t~K~mPa 89 (108)
T 2loo_A 67 FTAFFLATIMGVRFKRSKKIMPA 89 (108)
Confidence 35668888999999999999863
No 5
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=6.81 E-value=41 Score=17.56 Aligned_cols=11 Identities=18% Similarity=0.153 Sum_probs=8.2
Q ss_pred cccccccCCCC
Q psy12645 17 DSSFKLGRDRP 27 (218)
Q Consensus 17 ~~~~~~Mk~Rk 27 (218)
.+++|++++||
T Consensus 8 ~SLqRFleKRk 18 (21)
T 3ogl_Q 8 ASLHRFLEKRK 18 (26)
T ss_pred HHHHHHHHHhh
Confidence 35788888876
No 6
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=6.54 E-value=29 Score=18.36 Aligned_cols=10 Identities=20% Similarity=0.178 Sum_probs=5.9
Q ss_pred ccccccCCCC
Q psy12645 18 SSFKLGRDRP 27 (218)
Q Consensus 18 ~~~~~Mk~Rk 27 (218)
+++++|++||
T Consensus 4 SLqRFleKRk 13 (22)
T 3ogk_Q 4 SLHRFLEKRK 13 (26)
T ss_pred hHHHHHHHHH
Confidence 4566666654
No 7
>2los_A Transmembrane protein 14C; paramagnetic relaxation enhancement, helic; NMR {Homo sapiens}
Probab=7.68 E-value=1.3e+02 Score=22.35 Aligned_cols=24 Identities=4% Similarity=-0.184 Sum_probs=19.9
Q ss_pred eeccccccccccccccCCCCCccc
Q psy12645 8 RDSSFKPGRDSSFKLGRDRPSYSL 31 (218)
Q Consensus 8 ~~~~~~~~~~~~~~~Mk~Rkp~~L 31 (218)
..+|.++....++|+.+.|||+.-
T Consensus 75 l~~S~~L~~~mg~R~~~t~K~mPa 98 (121)
T 2los_A 75 LATSGTLAGIMGMRFYHSGKFMPA 98 (121)
Confidence 346678888999999999999864
No 8
>2f8e_A VPG protein; RNA-dependent RNA polymerase , protein primer, transferase; HET: U5P; 2.90A {Foot-and-mouth disease virus - type C} PDB: 2d7s_B
Probab=5.36 E-value=1.6e+02 Score=15.85 Aligned_cols=11 Identities=9% Similarity=0.078 Sum_probs=7.5
Q ss_pred cCCCCCccchh
Q psy12645 23 GRDRPSYSLQA 33 (218)
Q Consensus 23 Mk~Rkp~~Lk~ 33 (218)
|++.+|.++|.
T Consensus 7 lerq~plkvka 17 (26)
T 2f8e_A 7 LERQRPLKVKA 17 (26)
T ss_pred hhhcCcceeee
Confidence 67777777653
No 9
>3h34_A Cytochrome C7, cytochrome C3; multiheme cytochrome, geobacter sulfurreducen electron transport; HET: HEM; 1.60A {Geobacter sulfurreducens} SCOP: a.138.1.1
Probab=5.01 E-value=1.7e+02 Score=19.31 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=17.0
Q ss_pred hheeeeeecCCCceeEEeeeccchh
Q psy12645 93 DTFFFVMRKKYDQVSTLHVIHHGVM 117 (218)
Q Consensus 93 DTvf~VLRKK~~qlsFLHvYHH~~~ 117 (218)
|| +++..|..+|.|-|-.|....
T Consensus 2 d~--~~~~~~~~~V~F~H~~H~~~~ 24 (70)
T 3h34_A 2 DV--ILFPSKNGAVTFTHKRHSEFV 24 (70)
T ss_dssp CS--EEECCTTCCEEECHHHHTTTC
T ss_pred Ce--eEecCCCCceecCHHHHHhhc
Confidence 55 355556679999999998753
No 10
>1b4b_A Arginine repressor; core, oligomerization domain, helix TUR; HET: ARG; 2.20A {Geobacillus stearothermophilus} SCOP: d.74.2.1
Probab=4.97 E-value=1.9e+02 Score=19.01 Aligned_cols=10 Identities=30% Similarity=0.527 Sum_probs=7.3
Q ss_pred hheeeeeecC
Q psy12645 93 DTFFFVMRKK 102 (218)
Q Consensus 93 DTvf~VLRKK 102 (218)
||+|++.|..
T Consensus 48 DTIlvi~r~~ 57 (71)
T 1b4b_A 48 DTCLIICRTP 57 (71)
T ss_dssp SEEEEEESSH
T ss_pred CEEEEEECCH
Confidence 7788887754
Done!