Query psy12645
Match_columns 218
No_of_seqs 156 out of 1136
Neff 6.6
Searched_HMMs 13730
Date Fri Aug 16 15:55:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12645.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12645hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtl1 f.23.31.1 (L:1-37) Pho 42.7 20 0.0014 19.7 3.9 26 161-186 11-36 (37)
2 d1vf5c3 f.23.23.1 (C:250-286) 24.5 3.7 0.00027 23.1 -1.3 14 91-106 17-30 (37)
3 d1q90a3 f.23.23.1 (A:248-292) 18.3 3.7 0.00027 24.0 -2.3 14 91-106 16-29 (45)
4 d1d4ba_ d.15.2.1 (A:) Cell dea 11.4 25 0.0019 24.6 0.2 20 13-32 22-41 (122)
5 d2e74e1 f.23.24.1 (E:1-32) Pet 5.8 2.1E+02 0.015 14.5 2.4 12 170-181 4-15 (32)
6 d2glia2 g.37.1.1 (A:135-167) F 5.2 1.9E+02 0.014 15.2 1.9 15 24-38 12-26 (33)
7 d3cx5c2 f.21.1.2 (C:1-261) Mit 4.8 2.6E+02 0.019 21.3 3.5 24 170-193 87-110 (261)
8 d1gsaa1 c.30.1.3 (A:1-122) Pro 4.5 1.6E+02 0.012 19.7 1.7 19 20-38 82-100 (122)
9 d1q90b_ f.21.1.2 (B:) Cytochro 4.2 2.5E+02 0.018 20.7 2.8 23 170-192 88-110 (212)
10 d1k8kf_ d.198.2.1 (F:) ARPC4 ( 4.2 1.2E+02 0.0088 22.0 0.8 22 95-116 99-123 (167)
No 1
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=42.66 E-value=20 Score=19.71 Aligned_cols=26 Identities=12% Similarity=0.190 Sum_probs=21.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHH
Q psy12645 161 DYPKAFAWWIGGHAVMFYFLFSNFYK 186 (218)
Q Consensus 161 ~~~~~~~~~~~~~~~s~l~LF~nFy~ 186 (218)
+..+...+++.......-+||+++|.
T Consensus 11 eLNrtsLy~GlLlifvl~vLFssYfF 36 (37)
T d2axtl1 11 ELNRTSLYLGLLLILVLALLFSSYFF 36 (37)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHhc
Confidence 44577788898888889999999875
No 2
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=24.50 E-value=3.7 Score=23.08 Aligned_cols=14 Identities=29% Similarity=0.714 Sum_probs=10.3
Q ss_pred hhhheeeeeecCCCce
Q psy12645 91 FFDTFFFVMRKKYDQV 106 (218)
Q Consensus 91 l~DTvf~VLRKK~~ql 106 (218)
++--+++||+|| |+
T Consensus 17 ~laQi~lVlKKK--Q~ 30 (37)
T d1vf5c3 17 MLAQLMLILKKK--QV 30 (37)
T ss_dssp HHHHHHHHHHTG--GG
T ss_pred HHHHHHHHHHHH--HH
Confidence 345678899999 64
No 3
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=18.35 E-value=3.7 Score=24.03 Aligned_cols=14 Identities=29% Similarity=0.624 Sum_probs=10.6
Q ss_pred hhhheeeeeecCCCce
Q psy12645 91 FFDTFFFVMRKKYDQV 106 (218)
Q Consensus 91 l~DTvf~VLRKK~~ql 106 (218)
++--+|+||+|| |+
T Consensus 16 ~laQi~LVLKKK--Qf 29 (45)
T d1q90a3 16 LLTQVLLVLKKK--QF 29 (45)
T ss_dssp HHHHHHHHHHHH--HH
T ss_pred HHHHHHHHHHHH--HH
Confidence 455678999999 64
No 4
>d1d4ba_ d.15.2.1 (A:) Cell death-inducing effector B (CIDE-B), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.43 E-value=25 Score=24.64 Aligned_cols=20 Identities=10% Similarity=0.051 Sum_probs=13.5
Q ss_pred cccccccccccCCCCCccch
Q psy12645 13 KPGRDSSFKLGRDRPSYSLQ 32 (218)
Q Consensus 13 ~~~~~~~~~~Mk~Rkp~~Lk 32 (218)
-+..+++...|...+||.++
T Consensus 22 ~~~~~~~~~~~~~~RPfKV~ 41 (122)
T d1d4ba_ 22 EFGRRVWTSAPPPQRPFRVC 41 (122)
T ss_dssp CSCSSCCCCSSCCCEEEEEE
T ss_pred eEEEEEccCCCCCCCCeEEe
Confidence 55666666677777888653
No 5
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=5.80 E-value=2.1e+02 Score=14.46 Aligned_cols=12 Identities=25% Similarity=0.282 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHH
Q psy12645 170 IGGHAVMFYFLF 181 (218)
Q Consensus 170 ~~~~~~s~l~LF 181 (218)
+.+.++.|+.||
T Consensus 4 gavfyivfialf 15 (32)
T d2e74e1 4 GAVFYIVFIALF 15 (32)
T ss_dssp HHHHHHHHHHHH
T ss_pred eeeHHHHHHHHH
Confidence 344455666665
No 6
>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.18 E-value=1.9e+02 Score=15.22 Aligned_cols=15 Identities=13% Similarity=0.412 Sum_probs=11.1
Q ss_pred CCCCCccchhHHHHH
Q psy12645 24 RDRPSYSLQAIIIII 38 (218)
Q Consensus 24 k~Rkp~~Lk~~l~~y 38 (218)
|+.+||+-+.-|+.|
T Consensus 12 R~~~pf~a~YkLv~H 26 (33)
T d2glia2 12 RELRPFKAQYMLVVH 26 (33)
T ss_dssp TTTCCCSSHHHHHHH
T ss_pred CCCCcchhHHHHHHH
Confidence 456799888877765
No 7
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.84 E-value=2.6e+02 Score=21.33 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCC
Q psy12645 170 IGGHAVMFYFLFSNFYKETYVKKP 193 (218)
Q Consensus 170 ~~~~~~s~l~LF~nFy~~sY~k~~ 193 (218)
.......++-++..+|..+|++++
T Consensus 87 ~~~~~~~~lH~~r~~~~gsy~~pr 110 (261)
T d3cx5c2 87 SFFFMVMFMHMAKGLYYGSYRSPR 110 (261)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSTTC
T ss_pred HHHHHHHHHHHHHHHHhccccCcc
Confidence 455667888899999999997753
No 8
>d1gsaa1 c.30.1.3 (A:1-122) Prokaryotic glutathione synthetase, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=4.49 E-value=1.6e+02 Score=19.66 Aligned_cols=19 Identities=21% Similarity=0.287 Sum_probs=14.6
Q ss_pred ccccCCCCCccchhHHHHH
Q psy12645 20 FKLGRDRPSYSLQAIIIII 38 (218)
Q Consensus 20 ~~~Mk~Rkp~~Lk~~l~~y 38 (218)
--+||.=|||+.+.+-..|
T Consensus 82 ~i~mRkDPPfd~~Yl~~T~ 100 (122)
T d1gsaa1 82 VILMRKDPPFDTEFIYATY 100 (122)
T ss_dssp EEEECCCCCCCHHHHHHHH
T ss_pred EEEEecCCCCcHHHHHHHH
Confidence 3479999999998765544
No 9
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.20 E-value=2.5e+02 Score=20.74 Aligned_cols=23 Identities=9% Similarity=0.134 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCC
Q psy12645 170 IGGHAVMFYFLFSNFYKETYVKK 192 (218)
Q Consensus 170 ~~~~~~s~l~LF~nFy~~sY~k~ 192 (218)
..+....++-++..||..+|+++
T Consensus 88 s~~~~~~~lHm~r~~~~gsyk~p 110 (212)
T d1q90b_ 88 SMMVLMMVLHVFRVYLTGGFKRP 110 (212)
T ss_dssp HHHHHHHHHHHHHHHTTTTTSSS
T ss_pred hHHHHHHHHHHHHHHHcCcccCc
Confidence 44566677888888999999664
No 10
>d1k8kf_ d.198.2.1 (F:) ARPC4 (20 kDa subunit) {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.17 E-value=1.2e+02 Score=21.99 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=15.7
Q ss_pred eeeeeecCCC---ceeEEeeeccch
Q psy12645 95 FFFVMRKKYD---QVSTLHVIHHGV 116 (218)
Q Consensus 95 vf~VLRKK~~---qlsFLHvYHH~~ 116 (218)
-|.|||+|+- .+|||=..+|+-
T Consensus 99 ~F~ILRrkPi~GYDISFLItn~h~e 123 (167)
T d1k8kf_ 99 NFFILRRKPVEGYDISFLITNFHTE 123 (167)
T ss_dssp TSTTBCSSCCTTCSEEEEEEHHHHH
T ss_pred hceeeeecCcCCCceeeeehhHHHH
Confidence 4889999932 267877777654
Done!