RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy12645
         (218 letters)



>gnl|CDD|216332 pfam01151, ELO, GNS1/SUR4 family.  Members of this family are
           involved in long chain fatty acid elongation systems
           that produce the 26-carbon precursors for ceramide and
           sphingolipid synthesis. Predicted to be integral
           membrane proteins, in eukaryotes they are probably
           located on the endoplasmic reticulum. Yeast ELO3 affects
           plasma membrane H+-ATPase activity, and may act on a
           glucose-signaling pathway that controls the expression
           of several genes that are transcriptionally regulated by
           glucose such as PMA1.
          Length = 244

 Score =  145 bits (369), Expect = 2e-43
 Identities = 70/215 (32%), Positives = 94/215 (43%), Gaps = 43/215 (20%)

Query: 24  RDRPSYSLQAIIIIIN----VASSMPKIQAMDGAWYRDYSLRCEPVDYSTTPKAMRVARG 79
           R+R  + L+ ++I+ N    + S       + GA +         V YS  P A+R+   
Sbjct: 28  RNRKPFDLKRLLIVHNLFLVLLSLYGFYGLLAGAGWGRGLYLALCVCYSFDPGAIRMGLV 87

Query: 80  CWWY--FFSKFTEFFDTFFFVMRKKYDQVSTLHVIHHGVMPLSTWFGVKFTPGGHSTFFG 137
            +WY  F SKF E  DT F V+RKK  Q+S LHV HH  M L +W G+K+ PGGH  F  
Sbjct: 88  GFWYWLFLSKFLELLDTVFLVLRKKQRQLSFLHVYHHATMLLYSWLGLKYGPGGHFWFIA 147

Query: 138 LLNTF--------------------------------IQFVCILIHAFQLFFIE----CD 161
           LLN+F                                IQFV  L H     +      C 
Sbjct: 148 LLNSFVHVIMYFYYFLAALGARGLPVWWKKYITQLQIIQFVLGLAHVGYALYNYTKGGCG 207

Query: 162 YPKAFAWWIG-GHAVMFYFLFSNFYKETYVKKPKK 195
            P   A  +G  + V + FLF NFY ++Y K  KK
Sbjct: 208 GPFPKAVRLGLVYYVSYLFLFLNFYIKSYKKPKKK 242


>gnl|CDD|140278 PTZ00251, PTZ00251, fatty acid elongase; Provisional.
          Length = 272

 Score = 29.8 bits (67), Expect = 0.91
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)

Query: 86  SKFTEFFDTFFFVMRKKYDQVSTLHVIHHGVMPLSTWF 123
           SK  EF DTFF +M  K  ++  L   HH  + L  W 
Sbjct: 121 SKVPEFGDTFFLIMGGK--KLPFLSWFHHVTIFLYAWM 156


>gnl|CDD|219152 pfam06728, PIG-U, GPI transamidase subunit PIG-U.  Many eukaryotic
           proteins are anchored to the cell surface via
           glycosylphosphatidylinositol (GPI), which is
           posttranslationally attached to the carboxyl-terminus by
           GPI transamidase. The mammalian GPI transamidase is a
           complex of at least four subunits, GPI8, GAA1, PIG-S,
           and PIG-T. PIG-U is thought to represent a fifth subunit
           in this complex and may be involved in the recognition
           of either the GPI attachment signal or the lipid portion
           of GPI.
          Length = 373

 Score = 29.5 bits (67), Expect = 1.4
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 5/23 (21%)

Query: 79  GCWWYFFSKFTEFFDTF--FFVM 99
           G WWYFF+   E FD F  FF+ 
Sbjct: 251 GLWWYFFT---EMFDHFRLFFLF 270


>gnl|CDD|216766 pfam01889, DUF63, Membrane protein of unknown function DUF63.
           Proteins found in Archaebacteria of unknown function.
           These proteins are probably transmembrane proteins.
          Length = 272

 Score = 26.9 bits (60), Expect = 7.4
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 10/67 (14%)

Query: 118 PLSTWFGVKFTPGGHSTFFGLLNTFIQFVCILIHAFQLFFIECDYPKAFAWW-IGGHAVM 176
           PLS  F    TPG +   F     F+    +LI + +LF    DY K FA   +    + 
Sbjct: 80  PLSYLF---ITPGIYFLIF-----FVALPALLI-SGKLFKAGKDYYKLFAAVGLILALIN 130

Query: 177 FYFLFSN 183
              L  N
Sbjct: 131 LGLLLVN 137


>gnl|CDD|220636 pfam10222, DUF2152, Uncharacterized conserved protein (DUF2152).
           This is a family of proteins conserved from worms to
           humans. Its function is unknown.
          Length = 603

 Score = 27.1 bits (60), Expect = 8.8
 Identities = 16/49 (32%), Positives = 17/49 (34%), Gaps = 1/49 (2%)

Query: 108 TLHVIHHGVMPLSTWFGVKFTPGGHSTFFGLLNTFIQFVCILIHAFQLF 156
            LHV      P      +     GHS   GL   F   V  LI  F LF
Sbjct: 535 ALHVKEVLEAPAHEEHMIALHRHGHSLG-GLPTLFWVSVASLITLFHLF 582


>gnl|CDD|131433 TIGR02380, ECA_wecA, undecaprenyl-phosphate
           alpha-N-acetylglucosaminyl 1-phosphatetransferase.
           Members of this family are the WecA enzyme of
           enterobacterial common antigen biosynthesis,
           undecaprenyl-phosphate alpha-N-acetylglucosaminyl
           1-phosphatetransferase. This family represents one
           narrow clade, and closely related sequences outside this
           clade may represent enzymes that catalyze the same
           specific reaction, but in the context of different
           pathways. A His-rich motif in a cytosolic loop of this
           integral membrane protein, shown critical to enzymatic
           activity for WecA (see ref ) is variously present or
           absent in the clade that includes Bacillus subtilis TagO
           teichoic acid biosynthesis enzyme, which may catalyze
           the same reaction as WecA [Cell envelope, Biosynthesis
           and degradation of surface polysaccharides and
           lipopolysaccharides].
          Length = 346

 Score = 27.0 bits (60), Expect = 9.0
 Identities = 18/76 (23%), Positives = 22/76 (28%), Gaps = 20/76 (26%)

Query: 88  FTEFFDTFF------FVMRKKYDQVS-----TLHVIHHGVMPLSTWFGVKFTPGGHSTFF 136
           F E    F       F+MRK    V           H G +PL          GG S F 
Sbjct: 1   FLELIVIFLSSFAFLFLMRKVAKIVGLVDKPNARKRHQGFIPLV---------GGISIFL 51

Query: 137 GLLNTFIQFVCILIHA 152
            L         ++ H 
Sbjct: 52  TLCIYLFLHPALIPHY 67


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.327    0.140    0.472 

Gapped
Lambda     K      H
   0.267   0.0788    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,225,602
Number of extensions: 1037192
Number of successful extensions: 1029
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1024
Number of HSP's successfully gapped: 27
Length of query: 218
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 125
Effective length of database: 6,812,680
Effective search space: 851585000
Effective search space used: 851585000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (25.6 bits)