RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy12645
         (218 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 29.9 bits (66), Expect = 0.34
 Identities = 6/30 (20%), Positives = 13/30 (43%), Gaps = 12/30 (40%)

Query: 9  DSSFK---PGRDSSFKLGRDRPSYSLQAII 35
           +S K      DS+       P+ +++A +
Sbjct: 26 QASLKLYAD--DSA-------PALAIKATM 46


>3fmg_A Glycoprotein VP7; antibody-antigen complex, calcium dependent
           trimer, antipara beta-sandwich, jelly roll,
           alpha-beta-alpha sandwich; 3.40A {Simian rotavirus} PDB:
           3iyu_A* 3gzt_B* 2kvl_A
          Length = 276

 Score = 28.1 bits (62), Expect = 2.4
 Identities = 9/40 (22%), Positives = 16/40 (40%)

Query: 63  EPVDYSTTPKAMRVARGCWWYFFSKFTEFFDTFFFVMRKK 102
           +P     T + MR+    WW  F    ++ +     M K+
Sbjct: 224 DPTTAPQTERMMRINWKKWWQVFYTVVDYVNQIIQAMSKR 263


>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure
           initiati nysgrc, NEW YORK structural genomics research
           consortium; 2.80A {Sinorhizobium meliloti}
          Length = 417

 Score = 27.9 bits (62), Expect = 2.9
 Identities = 6/31 (19%), Positives = 9/31 (29%)

Query: 159 ECDYPKAFAWWIGGHAVMFYFLFSNFYKETY 189
                   +    GH   +   F+N Y E  
Sbjct: 340 ASPAAARVSRIPSGHPEGYLEGFANIYSEAA 370


>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat
           repeat, translation; 2.24A {Homo sapiens} SCOP:
           a.118.1.14 a.118.1.14
          Length = 339

 Score = 27.1 bits (59), Expect = 5.3
 Identities = 10/63 (15%), Positives = 18/63 (28%), Gaps = 13/63 (20%)

Query: 133 STFFGLLNTFIQFV---CILIHAFQLFFIECDYPKAFAWWIGGHAVMFYFLFSNFYKETY 189
                LL  ++         ++A Q   +  + P            +    F   Y E  
Sbjct: 273 KARAKLLQKYLCDEQKELQALYALQALVVTLEQPPN----------LLRMFFDALYDEDV 322

Query: 190 VKK 192
           VK+
Sbjct: 323 VKE 325


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.327    0.140    0.472 

Gapped
Lambda     K      H
   0.267   0.0616    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,443,572
Number of extensions: 194139
Number of successful extensions: 445
Number of sequences better than 10.0: 1
Number of HSP's gapped: 445
Number of HSP's successfully gapped: 12
Length of query: 218
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 128
Effective length of database: 4,188,903
Effective search space: 536179584
Effective search space used: 536179584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.2 bits)