BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12647
(410 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 84.7 bits (208), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 80/183 (43%), Gaps = 23/183 (12%)
Query: 215 ARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLR 274
A L G Y C +C F + L +H R HT E+P+ CP C ++F K
Sbjct: 13 AALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDK---------- 62
Query: 275 LFCLYFPQELISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCG 332
++L H H GE + Y C +C + F + L H TH + Y C CG
Sbjct: 63 -------KDLTRHQRTHTGE-KPYKC--PECGKSFSQRANLRAHQRTHTGEKPYACPECG 112
Query: 333 HMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTF 392
F+ L H R HTG Y C +C F L H R HT E+P+ CP C ++F
Sbjct: 113 KSFSQLAHLRAHQ-RTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSF 171
Query: 393 RRK 395
R+
Sbjct: 172 SRR 174
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 86/204 (42%), Gaps = 24/204 (11%)
Query: 180 SASLLARHVSTHAIQYTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAYEL 239
S+S+ + Y C CG F+ L +H R HTG Y C +C F +L
Sbjct: 7 SSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQ-RTHTGEKPYKCPECGKSFSDKKDL 65
Query: 240 RQHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYV 299
+H R HT E+P+ CP C ++F ++ L +H H GE + Y
Sbjct: 66 TRHQRTHTGEKPYKCPECGKSFSQRA-----------------NLRAHQRTHTGE-KPYA 107
Query: 300 CNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPC 357
C +C + F + L H TH + Y C CG F+ + L H R HTG Y C
Sbjct: 108 C--PECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQ-RTHTGEKPYKC 164
Query: 358 TQCPGKFYSAYELRQHVRQHTDER 381
+C F L H R HT ++
Sbjct: 165 PECGKSFSRRDALNVHQRTHTGKK 188
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 73/177 (41%), Gaps = 26/177 (14%)
Query: 153 LISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRL 210
L H H GE + Y C +C + F L RH TH + Y C CG F+ + L
Sbjct: 37 LAEHQRTHTGE-KPYKC--PECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANL 93
Query: 211 TQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRKGLESFT 270
H R HTG Y C +C F LR H R HT E+P+ CP C ++F R+
Sbjct: 94 RAHQ-RTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSRE------ 146
Query: 271 FSLRLFCLYFPQELISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTHAIQYT 327
L +H H G E+ Y C +C + F L H TH + T
Sbjct: 147 -----------DNLHTHQRTHTG-EKPYKC--PECGKSFSRRDALNVHQRTHTGKKT 189
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 79/207 (38%), Gaps = 29/207 (14%)
Query: 47 SLLVYPVLILFRFIFVCTQ-GSADSHKHHLKDHVNKIHLHPKTFSCNSCGQTWLGYTSWK 105
S + L + C + G + S HL +H + H K + C CG+++
Sbjct: 8 SSVAQAALEPGEKPYACPECGKSFSRSDHLAEH-QRTHTGEKPYKCPECGKSFSDKKDLT 66
Query: 106 QHVAACREKRRKETFPCKRCDERFSTRDGLESFTFSLRLFCLYFPQELISHSSYHGGEER 165
+H R ++ + C C + FS R L + H H GE +
Sbjct: 67 RHQ---RTHTGEKPYKCPECGKSFSQRANLRA------------------HQRTHTGE-K 104
Query: 166 RYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLS 223
Y C +C + F + L H TH + Y C CG F+ + L H R HTG
Sbjct: 105 PYAC--PECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQ-RTHTGEKP 161
Query: 224 YPCTQCPGKFYSAYELRQHVRQHTDER 250
Y C +C F L H R HT ++
Sbjct: 162 YKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 71/197 (36%), Gaps = 47/197 (23%)
Query: 26 DFIQVHLRLHSGERRFPCEYCSLLVYPVLILFRFIFVCTQGSADSHKHHLKDHVNKIHLH 85
D + H R H+GE+ + C C G + S K L H + H
Sbjct: 35 DHLAEHQRTHTGEKPYKCPEC-------------------GKSFSDKKDLTRH-QRTHTG 74
Query: 86 PKTFSCNSCGQTWLGYTSWKQHVAACREKRRKETFPCKRCDERFSTRDGLESFTFSLRLF 145
K + C CG+++ + + H R ++ + C C + FS
Sbjct: 75 EKPYKCPECGKSFSQRANLRAHQ---RTHTGEKPYACPECGKSFSQL------------- 118
Query: 146 CLYFPQELISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHM 203
L +H H G E+ Y C +C + F L H TH + Y C CG
Sbjct: 119 -----AHLRAHQRTHTG-EKPYKC--PECGKSFSREDNLHTHQRTHTGEKPYKCPECGKS 170
Query: 204 FTCKRRLTQHLARLHTG 220
F+ + L H R HTG
Sbjct: 171 FSRRDALNVHQ-RTHTG 186
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 163 EERRYVCNHMQCTRRFHSASLLARHVSTHAIQ-YTCHMCGHMFTCKRRLTQHLARLHTGS 221
E R C H CT+ F S + +H+ TH + + C CG F +L +H +HTG
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQL-VHTGE 60
Query: 222 LSYPCT--QCPGKFYSAYELRQHVRQHTDERPFPCPV--CQRTF 261
+ CT C +F + LR HVR HT +RP+ CP C + F
Sbjct: 61 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKF 104
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 294 EERRYVCNHMQCTRRFHSASLLARHVSTHAIQ-YTCHMCGHMFTCKRRLTQHLARLHTGS 352
E R C H CT+ F S + +H+ TH + + C CG F +L +H +HTG
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQL-VHTGE 60
Query: 353 LSYPCT--QCPGKFYSAYELRQHVRQHTDERPFPCPV--CQRTF 392
+ CT C +F + LR HVR HT +RP+ CP C + F
Sbjct: 61 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKF 104
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 25/114 (21%)
Query: 83 HLH---PKTFSCNSCGQTWLGYTSWKQH-VAACREKRRKETFPCKRCDERFSTRDGLESF 138
HLH P+ C CG+ ++ + K+H + EK + TF + C +RFS
Sbjct: 26 HLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTF--EGCGKRFS-------L 76
Query: 139 TFSLRLFCLYFPQELISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTHA 192
F+LR +H H G+ R YVC C ++F ++ L H+ THA
Sbjct: 77 DFNLR-----------THVRIHTGD-RPYVCPFDGCNKKFAQSTNLKSHILTHA 118
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
Y C CG F+ L +H R HTG Y C +C F + +L++H R HT E+P+ C
Sbjct: 5 YKCPECGKSFSQSSNLQKH-QRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKC 63
Query: 255 PVCQRTFRR 263
P C ++F R
Sbjct: 64 PECGKSFSR 72
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
Y C CG F+ L +H R HTG Y C +C F + +L++H R HT E+P+ C
Sbjct: 5 YKCPECGKSFSQSSNLQKH-QRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKC 63
Query: 386 PVCQRTFRR 394
P C ++F R
Sbjct: 64 PECGKSFSR 72
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 164 ERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGS 221
E+ Y C +C + F +S L +H TH + Y C CG F+ L +H R HTG
Sbjct: 2 EKPYKC--PECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKH-QRTHTGE 58
Query: 222 LSYPCTQCPGKFYSAYELRQHVRQHTDER 250
Y C +C F + L +H R H +++
Sbjct: 59 KPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 295 ERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGS 352
E+ Y C +C + F +S L +H TH + Y C CG F+ L +H R HTG
Sbjct: 2 EKPYKC--PECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKH-QRTHTGE 58
Query: 353 LSYPCTQCPGKFYSAYELRQHVRQHTDER 381
Y C +C F + L +H R H +++
Sbjct: 59 KPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 22/98 (22%)
Query: 249 ERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVCNHMQCTRR 308
E+P+ CP C ++F + L H H G E+ Y C +C +
Sbjct: 2 EKPYKCPECGKSFSQSS-----------------NLQKHQRTHTG-EKPYKC--PECGKS 41
Query: 309 FHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQH 344
F +S L +H TH + Y C CG F+ L++H
Sbjct: 42 FSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRH 79
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 57/138 (41%), Gaps = 19/138 (13%)
Query: 219 TGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCL 278
+GS C C KF S Y L+ H R+HT E+PF CP C + + RK
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRK-------------- 48
Query: 279 YFPQELISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTHA--IQYTCHMCGHMFT 336
+ L+ H + + V C F L H+ +H + Y C C F
Sbjct: 49 ---ENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFM 105
Query: 337 CKRRLTQHLARLHTGSLS 354
K+ L H+ +LH+G S
Sbjct: 106 QKKDLQSHMIKLHSGPSS 123
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 350 TGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRK 395
+GS C C KF S Y L+ H R+HT E+PF CP C + + RK
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRK 48
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Query: 305 CTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLAR--LHTGSLSYPCTQC 360
C ++F S L H H + + C CG + K L +H AR ++ + C+ C
Sbjct: 13 CHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVC 72
Query: 361 PGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRK 395
F ELR H+ HT E P+ C C + F +K
Sbjct: 73 QETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQK 107
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 53/152 (34%), Gaps = 48/152 (31%)
Query: 72 KHHLKDHVNKIHLHPKTFSCNSCGQTWLGYTSWKQHVAACREKRRKETFPCKRCDERFST 131
K++LK H N+ H K F C CG+ + + +H A R ++ F C C E F
Sbjct: 20 KYYLKVH-NRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRR 78
Query: 132 RDGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTH 191
R LRL ++SH T
Sbjct: 79 R-------MELRL-------HMVSH---------------------------------TG 91
Query: 192 AIQYTCHMCGHMFTCKRRLTQHLARLHTGSLS 223
+ Y C C F K+ L H+ +LH+G S
Sbjct: 92 EMPYKCSSCSQQFMQKKDLQSHMIKLHSGPSS 123
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 178 FHSASLL---ARHVSTHAIQ-YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKF 233
F +LL AR+ + Q +TC +C F + L H+ HTG + Y C+ C +F
Sbjct: 46 FRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVS-HTGEMPYKCSSCSQQF 104
Query: 234 YSAYELRQHV 243
+L+ H+
Sbjct: 105 MQKKDLQSHM 114
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 7/109 (6%)
Query: 161 GGEERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHM--CGHMFTCKRRLTQHLAR 216
E+R ++C + C +R+ S L H H + Y C C F+ +L +H R
Sbjct: 1 ASEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRH-QR 59
Query: 217 LHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC--PVCQRTFRR 263
HTG + C C KF + L+ H R HT E+PF C P CQ+ F R
Sbjct: 60 RHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFAR 108
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 7/109 (6%)
Query: 292 GGEERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHM--CGHMFTCKRRLTQHLAR 347
E+R ++C + C +R+ S L H H + Y C C F+ +L +H R
Sbjct: 1 ASEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRH-QR 59
Query: 348 LHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC--PVCQRTFRR 394
HTG + C C KF + L+ H R HT E+PF C P CQ+ F R
Sbjct: 60 RHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFAR 108
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 164 ERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGS 221
ER Y C C RRF +S L RH+ H Q + C +C F+ LT H+ R HTG
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTGE 60
Query: 222 LSYPCTQCPGKFYSAYELRQHVRQH 246
+ C C KF + E ++H + H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 295 ERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGS 352
ER Y C C RRF +S L RH+ H Q + C +C F+ LT H+ R HTG
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTGE 60
Query: 353 LSYPCTQCPGKFYSAYELRQHVRQH 377
+ C C KF + E ++H + H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 2 IRIHIGPSVILMLMIMTRYSLPCVDFIQVHLRLHSGERRFPCEYCS 47
IRIH G + M +S D + H+R H+GE+ F C+ C
Sbjct: 26 IRIHTGQKPFQCRICMRNFSRS--DHLTTHIRTHTGEKPFACDICG 69
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 20/78 (25%)
Query: 31 HLRLHSGERRFPCEYCSLLVYPVLILFRFIFVCTQGSADSHKHHLKDHVNKIHLHPKTFS 90
H+R+H+G++ F C C + F S HL H+ + H K F+
Sbjct: 25 HIRIHTGQKPFQCRIC---------MRNF----------SRSDHLTTHI-RTHTGEKPFA 64
Query: 91 CNSCGQTWLGYTSWKQHV 108
C+ CG+ + K+H
Sbjct: 65 CDICGRKFARSDERKRHT 82
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
+ C +CG F+ K +L H+ R HTG Y C C + L +H+R H+DERPF C
Sbjct: 9 HKCEVCGKCFSRKDKLKTHM-RCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 255 PVCQRTFRR 263
+C R
Sbjct: 68 QICPYASRN 76
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
+ C +CG F+ K +L H+ R HTG Y C C + L +H+R H+DERPF C
Sbjct: 9 HKCEVCGKCFSRKDKLKTHM-RCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 386 PVCQRTFRR 394
+C R
Sbjct: 68 QICPYASRN 76
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 174 CTRRFHSASLLARHVSTH--AIQYTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPG 231
C + F L H+ H Y C C + L +HL R+H+ + C CP
Sbjct: 14 CGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHL-RIHSDERPFKCQICPY 72
Query: 232 KFYSAYELRQHVRQHTDE 249
++ +L H+R HT +
Sbjct: 73 ASRNSSQLTVHLRSHTGD 90
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 305 CTRRFHSASLLARHVSTH--AIQYTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPG 362
C + F L H+ H Y C C + L +HL R+H+ + C CP
Sbjct: 14 CGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHL-RIHSDERPFKCQICPY 72
Query: 363 KFYSAYELRQHVRQHTDE 380
++ +L H+R HT +
Sbjct: 73 ASRNSSQLTVHLRSHTGD 90
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 164 ERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGS 221
ER Y C C RRF ++ L RH+ H Q + C +C F+ LT H+ R HTG
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTGE 60
Query: 222 LSYPCTQCPGKFYSAYELRQHVRQH 246
+ C C KF + E ++H + H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 295 ERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGS 352
ER Y C C RRF ++ L RH+ H Q + C +C F+ LT H+ R HTG
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTGE 60
Query: 353 LSYPCTQCPGKFYSAYELRQHVRQH 377
+ C C KF + E ++H + H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 2 IRIHIGPSVILMLMIMTRYSLPCVDFIQVHLRLHSGERRFPCEYCS 47
IRIH G + M +S D + H+R H+GE+ F C+ C
Sbjct: 26 IRIHTGQKPFQCRICMRNFSRS--DHLTTHIRTHTGEKPFACDICG 69
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 20/78 (25%)
Query: 31 HLRLHSGERRFPCEYCSLLVYPVLILFRFIFVCTQGSADSHKHHLKDHVNKIHLHPKTFS 90
H+R+H+G++ F C C + F S HL H+ + H K F+
Sbjct: 25 HIRIHTGQKPFQCRIC---------MRNF----------SRSDHLTTHI-RTHTGEKPFA 64
Query: 91 CNSCGQTWLGYTSWKQHV 108
C+ CG+ + K+H
Sbjct: 65 CDICGRKFARSDERKRHT 82
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 164 ERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGS 221
ER Y C C RRF ++ L RH+ H Q + C +C F+ LT H+ R HTG
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTGE 60
Query: 222 LSYPCTQCPGKFYSAYELRQHVRQH 246
+ C C KF + E ++H + H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 295 ERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGS 352
ER Y C C RRF ++ L RH+ H Q + C +C F+ LT H+ R HTG
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTGE 60
Query: 353 LSYPCTQCPGKFYSAYELRQHVRQH 377
+ C C KF + E ++H + H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 2 IRIHIGPSVILMLMIMTRYSLPCVDFIQVHLRLHSGERRFPCEYCS 47
IRIH G + M +S D + H+R H+GE+ F C+ C
Sbjct: 26 IRIHTGQKPFQCRICMRNFSRS--DHLTTHIRTHTGEKPFACDICG 69
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 20/78 (25%)
Query: 31 HLRLHSGERRFPCEYCSLLVYPVLILFRFIFVCTQGSADSHKHHLKDHVNKIHLHPKTFS 90
H+R+H+G++ F C C + F S HL H+ + H K F+
Sbjct: 25 HIRIHTGQKPFQCRIC---------MRNF----------SRSDHLTTHI-RTHTGEKPFA 64
Query: 91 CNSCGQTWLGYTSWKQHV 108
C+ CG+ + K+H
Sbjct: 65 CDICGRKFARSDERKRHT 82
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 188 VSTHAIQYTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT--QCPGKFYSAYELRQHVRQ 245
+TH Y CG +T L HL R HTG Y C C KF + EL +H R+
Sbjct: 4 TATHTCDYA--GCGKTYTKSSHLKAHL-RTHTGEKPYHCDWDGCGWKFARSDELTRHYRK 60
Query: 246 HTDERPFPCPVCQRTFRR 263
HT RPF C C R F R
Sbjct: 61 HTGHRPFQCQKCDRAFSR 78
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 319 VSTHAIQYTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT--QCPGKFYSAYELRQHVRQ 376
+TH Y CG +T L HL R HTG Y C C KF + EL +H R+
Sbjct: 4 TATHTCDYA--GCGKTYTKSSHLKAHL-RTHTGEKPYHCDWDGCGWKFARSDELTRHYRK 60
Query: 377 HTDERPFPCPVCQRTFRR 394
HT RPF C C R F R
Sbjct: 61 HTGHRPFQCQKCDRAFSR 78
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Query: 161 GGEERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHM--CGHMFTCKRRLTQHLAR 216
G + C++ C + + +S L H+ TH + Y C CG F LT+H R
Sbjct: 1 GSRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHY-R 59
Query: 217 LHTGSLSYPCTQCPGKFYSAYELRQHVRQH 246
HTG + C +C F + L H+++H
Sbjct: 60 KHTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Query: 292 GGEERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHM--CGHMFTCKRRLTQHLAR 347
G + C++ C + + +S L H+ TH + Y C CG F LT+H R
Sbjct: 1 GSRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHY-R 59
Query: 348 LHTGSLSYPCTQCPGKFYSAYELRQHVRQH 377
HTG + C +C F + L H+++H
Sbjct: 60 KHTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 164 ERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGS 221
ER Y C C RRF + L RH+ H Q + C +C F+ LT H+ R HTG
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTGE 60
Query: 222 LSYPCTQCPGKFYSAYELRQHVRQH 246
+ C C KF + E ++H + H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 295 ERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGS 352
ER Y C C RRF + L RH+ H Q + C +C F+ LT H+ R HTG
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTGE 60
Query: 353 LSYPCTQCPGKFYSAYELRQHVRQH 377
+ C C KF + E ++H + H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 2 IRIHIGPSVILMLMIMTRYSLPCVDFIQVHLRLHSGERRFPCEYCS 47
IRIH G + M +S D + H+R H+GE+ F C+ C
Sbjct: 26 IRIHTGQKPFQCRICMRNFSRS--DHLTTHIRTHTGEKPFACDICG 69
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 20/83 (24%)
Query: 26 DFIQVHLRLHSGERRFPCEYCSLLVYPVLILFRFIFVCTQGSADSHKHHLKDHVNKIHLH 85
D + H+R+H+G++ F C C + F S HL H+ + H
Sbjct: 20 DELTRHIRIHTGQKPFQCRIC---------MRNF----------SRSDHLTTHI-RTHTG 59
Query: 86 PKTFSCNSCGQTWLGYTSWKQHV 108
K F+C+ CG+ + K+H
Sbjct: 60 EKPFACDICGRKFARSDERKRHT 82
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 188 VSTHAIQYTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT--QCPGKFYSAYELRQHVRQ 245
+TH Y CG +T L HL R HTG Y C C KF + EL +H R+
Sbjct: 3 TATHTCDYA--GCGKTYTKSSHLKAHL-RTHTGEKPYHCDWDGCGWKFARSDELTRHYRK 59
Query: 246 HTDERPFPCPVCQRTFRR 263
HT RPF C C R F R
Sbjct: 60 HTGHRPFQCQKCDRAFSR 77
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 319 VSTHAIQYTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT--QCPGKFYSAYELRQHVRQ 376
+TH Y CG +T L HL R HTG Y C C KF + EL +H R+
Sbjct: 3 TATHTCDYA--GCGKTYTKSSHLKAHL-RTHTGEKPYHCDWDGCGWKFARSDELTRHYRK 59
Query: 377 HTDERPFPCPVCQRTFRR 394
HT RPF C C R F R
Sbjct: 60 HTGHRPFQCQKCDRAFSR 77
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 167 YVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHM--CGHMFTCKRRLTQHLARLHTGSL 222
+ C++ C + + +S L H+ TH + Y C CG F LT+H R HTG
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHY-RKHTGHR 64
Query: 223 SYPCTQCPGKFYSAYELRQHVRQH 246
+ C +C F + L H+++H
Sbjct: 65 PFQCQKCDRAFSRSDHLALHMKRH 88
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 298 YVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHM--CGHMFTCKRRLTQHLARLHTGSL 353
+ C++ C + + +S L H+ TH + Y C CG F LT+H R HTG
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHY-RKHTGHR 64
Query: 354 SYPCTQCPGKFYSAYELRQHVRQH 377
+ C +C F + L H+++H
Sbjct: 65 PFQCQKCDRAFSRSDHLALHMKRH 88
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 164 ERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGS 221
ER Y C C RRF + L RH+ H Q + C +C F+ LT H+ R HTG
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTGE 60
Query: 222 LSYPCTQCPGKFYSAYELRQHVRQH 246
+ C C KF + E ++H + H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 295 ERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGS 352
ER Y C C RRF + L RH+ H Q + C +C F+ LT H+ R HTG
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTGE 60
Query: 353 LSYPCTQCPGKFYSAYELRQHVRQH 377
+ C C KF + E ++H + H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 2 IRIHIGPSVILMLMIMTRYSLPCVDFIQVHLRLHSGERRFPCEYCS 47
IRIH G + M +S D + H+R H+GE+ F C+ C
Sbjct: 26 IRIHTGQKPFQCRICMRNFSRS--DHLTTHIRTHTGEKPFACDICG 69
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 20/78 (25%)
Query: 31 HLRLHSGERRFPCEYCSLLVYPVLILFRFIFVCTQGSADSHKHHLKDHVNKIHLHPKTFS 90
H+R+H+G++ F C C + F S HL H+ + H K F+
Sbjct: 25 HIRIHTGQKPFQCRIC---------MRNF----------SRSDHLTTHI-RTHTGEKPFA 64
Query: 91 CNSCGQTWLGYTSWKQHV 108
C+ CG+ + K+H
Sbjct: 65 CDICGRKFARSDERKRHT 82
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 164 ERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGS 221
ER Y C C RRF + L RH+ H Q + C +C F+ LT H+ R HTG
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTGE 59
Query: 222 LSYPCTQCPGKFYSAYELRQHVRQH 246
+ C C KF + E ++H + H
Sbjct: 60 KPFACDICGRKFARSDERKRHTKIH 84
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 295 ERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGS 352
ER Y C C RRF + L RH+ H Q + C +C F+ LT H+ R HTG
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTGE 59
Query: 353 LSYPCTQCPGKFYSAYELRQHVRQH 377
+ C C KF + E ++H + H
Sbjct: 60 KPFACDICGRKFARSDERKRHTKIH 84
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 2 IRIHIGPSVILMLMIMTRYSLPCVDFIQVHLRLHSGERRFPCEYCS 47
IRIH G + M +S D + H+R H+GE+ F C+ C
Sbjct: 25 IRIHTGQKPFQCRICMRNFSRS--DHLTTHIRTHTGEKPFACDICG 68
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 20/83 (24%)
Query: 26 DFIQVHLRLHSGERRFPCEYCSLLVYPVLILFRFIFVCTQGSADSHKHHLKDHVNKIHLH 85
D + H+R+H+G++ F C C + F S HL H+ + H
Sbjct: 19 DELTRHIRIHTGQKPFQCRIC---------MRNF----------SRSDHLTTHI-RTHTG 58
Query: 86 PKTFSCNSCGQTWLGYTSWKQHV 108
K F+C+ CG+ + K+H
Sbjct: 59 EKPFACDICGRKFARSDERKRHT 81
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 200 CGHMFTCKRRLTQHLARLHTGSLSYPCT--QCPGKFYSAYELRQHVRQHTDERPFPCPVC 257
C ++T L HL R HTG Y CT C +F + EL +H R+HT +PF C VC
Sbjct: 23 CTKVYTKSSHLKAHL-RTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVC 81
Query: 258 QRTFRR 263
R+F R
Sbjct: 82 NRSFSR 87
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 331 CGHMFTCKRRLTQHLARLHTGSLSYPCT--QCPGKFYSAYELRQHVRQHTDERPFPCPVC 388
C ++T L HL R HTG Y CT C +F + EL +H R+HT +PF C VC
Sbjct: 23 CTKVYTKSSHLKAHL-RTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVC 81
Query: 389 QRTFRR 394
R+F R
Sbjct: 82 NRSFSR 87
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 163 EERR-YVCNHMQCTRRFHSASLLARHVSTHAIQ--YTC--HMCGHMFTCKRRLTQHLARL 217
E+RR + C++ CT+ + +S L H+ TH + Y C C F LT+H R
Sbjct: 11 EKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHY-RK 69
Query: 218 HTGSLSYPCTQCPGKFYSAYELRQHVRQHTD 248
HTG+ + C C F + L H+++H +
Sbjct: 70 HTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 294 EERR-YVCNHMQCTRRFHSASLLARHVSTHAIQ--YTC--HMCGHMFTCKRRLTQHLARL 348
E+RR + C++ CT+ + +S L H+ TH + Y C C F LT+H R
Sbjct: 11 EKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHY-RK 69
Query: 349 HTGSLSYPCTQCPGKFYSAYELRQHVRQHTD 379
HTG+ + C C F + L H+++H +
Sbjct: 70 HTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 164 ERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGS 221
ER Y C C RRF + L RH+ H Q + C +C F+ LT H+ R HTG
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTGE 60
Query: 222 LSYPCTQCPGKFYSAYELRQHVRQH 246
+ C C KF + E ++H + H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 295 ERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGS 352
ER Y C C RRF + L RH+ H Q + C +C F+ LT H+ R HTG
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTGE 60
Query: 353 LSYPCTQCPGKFYSAYELRQHVRQH 377
+ C C KF + E ++H + H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 2 IRIHIGPSVILMLMIMTRYSLPCVDFIQVHLRLHSGERRFPCEYCS 47
IRIH G + M +S D + H+R H+GE+ F C+ C
Sbjct: 26 IRIHTGQKPFQCRICMRNFSRS--DHLTTHIRTHTGEKPFACDICG 69
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 20/83 (24%)
Query: 26 DFIQVHLRLHSGERRFPCEYCSLLVYPVLILFRFIFVCTQGSADSHKHHLKDHVNKIHLH 85
D + H+R+H+G++ F C C + F S HL H+ + H
Sbjct: 20 DELTRHIRIHTGQKPFQCRIC---------MRNF----------SRSDHLTTHI-RTHTG 59
Query: 86 PKTFSCNSCGQTWLGYTSWKQHV 108
K F+C+ CG+ + K+H
Sbjct: 60 EKPFACDICGRKFARSDERKRHT 82
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 200 CGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQR 259
C F+ K L H+ R+HTG + C C F L QH+R HT E+PF C +C R
Sbjct: 12 CDRRFSQKTNLDTHI-RIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGR 70
Query: 260 TF 261
F
Sbjct: 71 KF 72
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 331 CGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQR 390
C F+ K L H+ R+HTG + C C F L QH+R HT E+PF C +C R
Sbjct: 12 CDRRFSQKTNLDTHI-RIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGR 70
Query: 391 TF 392
F
Sbjct: 71 KF 72
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 61 FVCTQGSAD---SHKHHLKDHVNKIHLHPKTFSCNSCGQTWLGYTSWKQHVAACREKRRK 117
+ C S D S K +L H+ +IH K F C C + + +T QH+ R +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHI-RIHTGQKPFQCRICMRNFSQHTGLNQHI---RTHTGE 60
Query: 118 ETFPCKRCDERFST 131
+ F C C +F+T
Sbjct: 61 KPFACDICGRKFAT 74
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 71/167 (42%), Gaps = 28/167 (16%)
Query: 227 TQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELIS 286
C + ++L+ H+ +HT E+PFPC + +G E SL L
Sbjct: 18 ADCGAAYNKNWKLQAHLCKHTGEKPFPC-------KEEGCEKGFTSL--------HHLTR 62
Query: 287 HSSYHGGEERRYVCNHMQCTRRFHSASLLARHVST-HAIQ---YTCHM--CGHMFTCKRR 340
HS H G E+ + C+ C RF + + + +H + H I+ Y CH CG F +
Sbjct: 63 HSLTHTG-EKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQ 121
Query: 341 LTQHLARLHTGSLSYPC--TQCPGKFYSAYELRQHVRQHTDERPFPC 385
L H HT L Y C C +F L++H + H +PC
Sbjct: 122 LKVHQFS-HTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPC 164
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 72/203 (35%), Gaps = 55/203 (27%)
Query: 165 RRYVCNHMQCTRRFHSASLLARHVSTHAIQYTCHMCGHMFTCKRRLTQHLARLHTGSLSY 224
+RY+C+ CG + +L HL + HTG +
Sbjct: 11 KRYICSFAD--------------------------CGAAYNKNWKLQAHLCK-HTGEKPF 43
Query: 225 PCTQ--CPGKFYSAYELRQHVRQHTDERPFPCPV--CQRTFRRKGLESFTFSLRLFCLYF 280
PC + C F S + L +H HT E+ F C C F K F
Sbjct: 44 PCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHF--------- 94
Query: 281 PQELISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTC--HMCGHMFT 336
+ +H + YVC+ C + F + L H +H Q Y C C F+
Sbjct: 95 -------NRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFS 147
Query: 337 CKRRLTQHLARLHTGSLSYPCTQ 359
RL +H ++H G YPC +
Sbjct: 148 LPSRLKRH-EKVHAG---YPCKK 166
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 200 CGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQR 259
C F+ K L H+ R+HTG + C C F L H+R HT E+PF C +C R
Sbjct: 12 CDRRFSQKTNLDTHI-RIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGR 70
Query: 260 TF 261
F
Sbjct: 71 KF 72
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 331 CGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQR 390
C F+ K L H+ R+HTG + C C F L H+R HT E+PF C +C R
Sbjct: 12 CDRRFSQKTNLDTHI-RIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGR 70
Query: 391 TF 392
F
Sbjct: 71 KF 72
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 20/101 (19%)
Query: 225 PCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQEL 284
P C +F L H+R HT ++PF C +C R F ++ L
Sbjct: 8 PVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQA-----------------SL 50
Query: 285 ISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTHAIQ 325
+H H G E+ + C+ C R+F + RH H Q
Sbjct: 51 NAHIRTHTG-EKPFACD--ICGRKFATLHTRTRHTKIHLRQ 88
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 356 PCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRKV 396
P C +F L H+R HT ++PF C +C R F ++
Sbjct: 8 PVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQA 48
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 2 IRIHIGPSVILMLMIMTRYSLPCVDFIQVHLRLHSGERRFPCEYCS 47
IRIH G + M +S + H+R H+GE+ F C+ C
Sbjct: 26 IRIHTGQKPFQCRICMRNFSQQAS--LNAHIRTHTGEKPFACDICG 69
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
+ C +CG F L+ HL +H+ + YPC C +F+ ++++H HT E+P C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLL-IHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 255 PVCQRTF 261
VC + F
Sbjct: 61 QVCGKAF 67
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
+ C +CG F L+ HL +H+ + YPC C +F+ ++++H HT E+P C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLL-IHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 386 PVCQRTF 392
VC + F
Sbjct: 61 QVCGKAF 67
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 305 CTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPG 362
C + F +S L+ H+ H+ Y C CG F K + +H +HTG + C C
Sbjct: 7 CGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTF-IHTGEKPHKCQVCGK 65
Query: 363 KFYSAYELRQHVRQHT 378
F + L H R+HT
Sbjct: 66 AFSQSSNLITHSRKHT 81
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 223 SYPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRK 264
S+ C C F + L H+ H+D RP+PC C + F +K
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQK 42
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 354 SYPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRK 395
S+ C C F + L H+ H+D RP+PC C + F +K
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQK 42
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 59/143 (41%), Gaps = 28/143 (19%)
Query: 200 CGHMFTCKRRLTQHLARLHTGS---LSYPC--TQCP--GK-FYSAYELRQHVRQHTDERP 251
C F+ L H+ H G ++ C +CP GK F + Y+L H+R HT E+P
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 252 FPCPV--CQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVCNHMQCTRRF 309
FPCP C + F R + L H H G E+ + C C RRF
Sbjct: 91 FPCPFPGCGKIFARS-----------------ENLKIHKRTHTG-EKPFKCEFEGCDRRF 132
Query: 310 HSASLLARHVSTHAIQYTCHMCG 332
++S +H+ H + G
Sbjct: 133 ANSSDRKKHMHVHTSDKSGPSSG 155
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 16/103 (15%)
Query: 305 CTRRFHSASLLARHVSTHAI---QYTCHMC--------GHMFTCKRRLTQHLARLHTGSL 353
C R F + L HV+ + + H+C G F K +L H+ R+HTG
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI-RVHTGEK 89
Query: 354 SYPCT--QCPGKFYSAYELRQHVRQHTDERPFPCPV--CQRTF 392
+PC C F + L+ H R HT E+PF C C R F
Sbjct: 90 PFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRF 132
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 331 CGHMFTCKRRLTQHLARLHTGS---LSYPC--TQCP--GK-FYSAYELRQHVRQHTDERP 382
C F+ L H+ H G ++ C +CP GK F + Y+L H+R HT E+P
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 383 FPCPV--CQRTFRR 394
FPCP C + F R
Sbjct: 91 FPCPFPGCGKIFAR 104
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 58/145 (40%), Gaps = 31/145 (21%)
Query: 121 PCKRCDERFSTRDGLESFTFSLRLFCLYFPQELISHSSYH---GGEERRYVCNHMQCTRR 177
P K CD FST EL++H + G E+ +VC +C R
Sbjct: 27 PKKSCDRTFSTM------------------HELVTHVTMEHVGGPEQNNHVCYWEECPRE 68
Query: 178 ---FHSASLLARHVSTHAIQ--YTCHM--CGHMFTCKRRLTQHLARLHTGSLSYPCT--Q 228
F + L H+ H + + C CG +F L H R HTG + C
Sbjct: 69 GKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIH-KRTHTGEKPFKCEFEG 127
Query: 229 CPGKFYSAYELRQHVRQHTDERPFP 253
C +F ++ + ++H+ HT ++ P
Sbjct: 128 CDRRFANSSDRKKHMHVHTSDKSGP 152
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 13/114 (11%)
Query: 283 ELISHSSYH---GGEERRYVCNHMQCTRR---FHSASLLARHVSTHAIQ--YTCHM--CG 332
EL++H + G E+ +VC +C R F + L H+ H + + C CG
Sbjct: 40 ELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCG 99
Query: 333 HMFTCKRRLTQHLARLHTGSLSYPCT--QCPGKFYSAYELRQHVRQHTDERPFP 384
+F L H R HTG + C C +F ++ + ++H+ HT ++ P
Sbjct: 100 KIFARSENLKIH-KRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGP 152
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 65/167 (38%), Gaps = 32/167 (19%)
Query: 169 CNHMQCTRRFHSASLLARHVSTHAI-----QYTCHMCG-----HMFTCKRRLTQHLARLH 218
C C++ F S L H+++ I ++ CH G F + L H+ R H
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR-H 62
Query: 219 TGSLSYPCT--QCPGKFYSAYELRQHVRQHTDERPFPCP--VCQRTFRRKGLESFTFSLR 274
TG + CT C + L+ H+R HT E+P+ C C + F
Sbjct: 63 TGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSN----------- 111
Query: 275 LFCLYFPQELISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVST 321
+ H + E+ YVC CT+R+ S L +HV T
Sbjct: 112 ------ASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 15/107 (14%)
Query: 300 CNHMQCTRRFHSASLLARHVSTHAI-----QYTCHMCG-----HMFTCKRRLTQHLARLH 349
C C++ F S L H+++ I ++ CH G F + L H+ R H
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR-H 62
Query: 350 TGSLSYPCT--QCPGKFYSAYELRQHVRQHTDERPFPC--PVCQRTF 392
TG + CT C + L+ H+R HT E+P+ C C + F
Sbjct: 63 TGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAF 109
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 223 SYPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRKGL 266
S+ C C F L++H R HT+E+P+PC +C R F R+ L
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDL 45
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 354 SYPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRK 395
S+ C C F L++H R HT+E+P+PC +C R F R+
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRR 43
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 174 CTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLS 223
CTR F L RH +H + Y C +C FT + L +H ++H+G+L
Sbjct: 8 CTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNLG 59
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 305 CTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLS 354
CTR F L RH +H + Y C +C FT + L +H ++H+G+L
Sbjct: 8 CTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNLG 59
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 223 SYPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRKG 265
+ C C F +Y L H R HTDERP+ C +C + FRR+
Sbjct: 17 EFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQD 59
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 354 SYPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRK 395
+ C C F +Y L H R HTDERP+ C +C + FRR+
Sbjct: 17 EFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQ 58
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 194 QYTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFP 253
++ C CG FT L H R HT Y C C F LR H H+ E+PF
Sbjct: 17 EFICKFCGRHFTKSYNLLIH-ERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK 75
Query: 254 CPVCQRTF 261
C C + F
Sbjct: 76 CQECGKGF 83
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 325 QYTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFP 384
++ C CG FT L H R HT Y C C F LR H H+ E+PF
Sbjct: 17 EFICKFCGRHFTKSYNLLIH-ERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK 75
Query: 385 CPVCQRTF 392
C C + F
Sbjct: 76 CQECGKGF 83
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%)
Query: 219 TGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRKGLESF 269
+GS C C F Y L +H H+ E+P+ CPVC F+RK S+
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSY 53
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 350 TGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRK 395
+GS C C F Y L +H H+ E+P+ CPVC F+RK
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRK 48
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 18/94 (19%)
Query: 320 STHAIQYTCHMCGHMFTCKRRLTQHLAR---LHTGSLSYPCTQCPGKFYSAYELRQHVRQ 376
S+ + C +CG +F R HL R H+G Y C C +F + HVR
Sbjct: 2 SSGSSGVACEICGKIF----RDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRS 57
Query: 377 HTDE--RPFPCPVCQRTFRRKVCTTPSPQPQHLD 408
H +P+ C C + F R P HL+
Sbjct: 58 HDGSVGKPYICQSCGKGFSR---------PDHLN 82
Score = 35.0 bits (79), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 9/80 (11%)
Query: 189 STHAIQYTCHMCGHMFTCKRRLTQHLAR---LHTGSLSYPCTQCPGKFYSAYELRQHVRQ 245
S+ + C +CG +F R HL R H+G Y C C +F + HVR
Sbjct: 2 SSGSSGVACEICGKIF----RDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRS 57
Query: 246 HTDE--RPFPCPVCQRTFRR 263
H +P+ C C + F R
Sbjct: 58 HDGSVGKPYICQSCGKGFSR 77
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 164 ERRYVCNHMQCTRRFHSASLLARHVSTH----AIQYTCHMCGHMFTCKRRLTQHLARLHT 219
E+ Y C C RF ++ HV +H Y C CG F+ L H+ ++H+
Sbjct: 33 EKPYSC--PVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHS 90
Query: 220 GSLS 223
G S
Sbjct: 91 GPSS 94
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 200 CGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQR 259
CG FT K + +H++ +H G Y C C KF + L H++ HT +P+ C +C +
Sbjct: 15 CGKSFTHKSQRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAK 73
Query: 260 TF 261
F
Sbjct: 74 RF 75
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 331 CGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQR 390
CG FT K + +H++ +H G Y C C KF + L H++ HT +P+ C +C +
Sbjct: 15 CGKSFTHKSQRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAK 73
Query: 391 TF 392
F
Sbjct: 74 RF 75
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 173 QCTRRFHSASLLARHVSTHAI--QYTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCP 230
QC + F S RH+S H Y C +CG F K L H+ ++HTG Y C C
Sbjct: 14 QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM-KIHTGIKPYECNICA 72
Query: 231 GKFYSAYELRQHV 243
+F +HV
Sbjct: 73 KRFMWRDSFHRHV 85
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 304 QCTRRFHSASLLARHVSTHAI--QYTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCP 361
QC + F S RH+S H Y C +CG F K L H+ ++HTG Y C C
Sbjct: 14 QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM-KIHTGIKPYECNICA 72
Query: 362 GKFYSAYELRQHV 374
+F +HV
Sbjct: 73 KRFMWRDSFHRHV 85
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 21/103 (20%)
Query: 219 TGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCL 278
+G YPC QC F + +H+ H RP+ C VC + F+ K
Sbjct: 6 SGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMK-------------- 50
Query: 279 YFPQELISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVST 321
L+ H H G + Y CN C +RF RHV++
Sbjct: 51 ---HHLVGHMKIHTG-IKPYECN--ICAKRFMWRDSFHRHVTS 87
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 350 TGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRK 395
+G YPC QC F + +H+ H RP+ C VC + F+ K
Sbjct: 6 SGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMK 50
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 20/81 (24%)
Query: 31 HLRLHSGERRFPCEYCSLLVYPVLILFRFIFVCTQGSADSHKHHLKDHVNKIHLHPKTFS 90
H+ +H G R + C C G KHHL H+ KIH K +
Sbjct: 28 HMSMHLGLRPYGCGVC-------------------GKKFKMKHHLVGHM-KIHTGIKPYE 67
Query: 91 CNSCGQTWLGYTSWKQHVAAC 111
CN C + ++ S+ +HV +C
Sbjct: 68 CNICAKRFMWRDSFHRHVTSC 88
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 16/94 (17%)
Query: 227 TQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELIS 286
C + ++L+ H+ +HT E+PFPC + +G E SL L
Sbjct: 9 ADCGAAYNKNWKLQAHLSKHTGEKPFPC-------KEEGCEKGFTSL--------HHLTR 53
Query: 287 HSSYHGGEERRYVCNHMQCTRRFHSASLLARHVS 320
HS H G E+ + C+ C RF + + + +H +
Sbjct: 54 HSLTHTG-EKNFTCDSDGCDLRFTTKANMKKHFN 86
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 331 CGHMFTCKRRLTQHLARLHTGSLSYPCTQ--CPGKFYSAYELRQHVRQHTDERPFPCP 386
CG + +L HL++ HTG +PC + C F S + L +H HT E+ F C
Sbjct: 11 CGAAYNKNWKLQAHLSK-HTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCD 67
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 358 TQCPGKFYSAYELRQHVRQHTDERPFPCPV--CQRTF 392
C + ++L+ H+ +HT E+PFPC C++ F
Sbjct: 9 ADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGF 45
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 152 ELISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHM--CGHMFTCK 207
+L +H S H GE + + C C + F S L RH TH + +TC C FT K
Sbjct: 20 KLQAHLSKHTGE-KPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTK 78
Query: 208 RRLTQHLARLHT 219
+ +H R H
Sbjct: 79 ANMKKHFNRFHN 90
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 283 ELISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHM--CGHMFTCK 338
+L +H S H GE + + C C + F S L RH TH + +TC C FT K
Sbjct: 20 KLQAHLSKHTGE-KPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTK 78
Query: 339 RRLTQHLARLHT 350
+ +H R H
Sbjct: 79 ANMKKHFNRFHN 90
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 29/93 (31%)
Query: 165 RRYVCNHMQCTRRFHSASLLARHVSTHAIQYTCHMCGHMFTCKRRLTQHLARLHTGSLSY 224
+RY+C+ CG + +L HL++ HTG +
Sbjct: 2 KRYICSFAD--------------------------CGAAYNKNWKLQAHLSK-HTGEKPF 34
Query: 225 PCTQ--CPGKFYSAYELRQHVRQHTDERPFPCP 255
PC + C F S + L +H HT E+ F C
Sbjct: 35 PCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCD 67
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 225 PCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRKG 265
P C +F + EL +H+R HT ++PF C +C R F R
Sbjct: 23 PVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSD 63
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 356 PCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRR 394
P C +F + EL +H+R HT ++PF C +C R F R
Sbjct: 23 PVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSR 61
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 150 PQELISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTCK 207
P + + +Y + R Y C C RRF + L RH+ H Q + C +C F+
Sbjct: 3 PHPMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRS 62
Query: 208 RRLTQHLARLHT 219
LT H+ R HT
Sbjct: 63 DHLTTHI-RTHT 73
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 281 PQELISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTCK 338
P + + +Y + R Y C C RRF + L RH+ H Q + C +C F+
Sbjct: 3 PHPMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRS 62
Query: 339 RRLTQHLARLHT 350
LT H+ R HT
Sbjct: 63 DHLTTHI-RTHT 73
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 179 HSASLLARHVSTHAIQYTCHM--CGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSA 236
H + L +V Y C + C F+ LT+H+ R+HTG + C C F +
Sbjct: 4 HPMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHI-RIHTGQKPFQCRICMRNFSRS 62
Query: 237 YELRQHVRQHT 247
L H+R HT
Sbjct: 63 DHLTTHIRTHT 73
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 310 HSASLLARHVSTHAIQYTCHM--CGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSA 367
H + L +V Y C + C F+ LT+H+ R+HTG + C C F +
Sbjct: 4 HPMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHI-RIHTGQKPFQCRICMRNFSRS 62
Query: 368 YELRQHVRQHT 378
L H+R HT
Sbjct: 63 DHLTTHIRTHT 73
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 188 VSTHAIQYTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQ 245
+S A + C +CG F K +HL LH + +PC CP FYS+ L +H+ +
Sbjct: 22 LSASAECHLCPVCGESFASKGAQERHLRLLHAAQV-FPCKYCPATFYSSPGLTRHINK 78
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 319 VSTHAIQYTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQ 376
+S A + C +CG F K +HL LH + +PC CP FYS+ L +H+ +
Sbjct: 22 LSASAECHLCPVCGESFASKGAQERHLRLLHAAQV-FPCKYCPATFYSSPGLTRHINK 78
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 224 YPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRKG 265
Y C +C + L++H+R HTD RP+ C C +F+ KG
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKG 43
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 355 YPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRK 395
Y C +C + L++H+R HTD RP+ C C +F+ K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTK 42
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 166 RYVCNHMQCTRRFHSASLLARHVSTHAI--QYTCHMCGHMFTCKRRLTQHL 214
+Y+C +C R S+L +H+ TH Y C C F K LT+H+
Sbjct: 1 KYICE--ECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 297 RYVCNHMQCTRRFHSASLLARHVSTHAI--QYTCHMCGHMFTCKRRLTQHL 345
+Y+C +C R S+L +H+ TH Y C C F K LT+H+
Sbjct: 1 KYICE--ECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 193 IQYTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPF 252
+ Y C +C + C L +H +H+ YPC C F A +H HT ER +
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHF-NIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRY 79
Query: 253 PCPVCQRTF 261
C C ++F
Sbjct: 80 QCLACGKSF 88
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 324 IQYTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPF 383
+ Y C +C + C L +H +H+ YPC C F A +H HT ER +
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHF-NIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRY 79
Query: 384 PCPVCQRTF 392
C C ++F
Sbjct: 80 QCLACGKSF 88
Score = 34.7 bits (78), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 20/115 (17%)
Query: 207 KRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRKGL 266
K + H + G + Y C C + LR+H H+ E+ +PC C++ F
Sbjct: 6 KVKHDDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFP---- 61
Query: 267 ESFTFSLRLFCLYFPQELISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVST 321
+ H +H G ERRY C + C + F + ++ H+ +
Sbjct: 62 -------------LAEYRTKHEIHHTG-ERRYQC--LACGKSFINYQFMSSHIKS 100
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 20/105 (19%)
Query: 6 IGPSVILMLMIMTRYSLPCVDFIQVHLRLHSGERRFPCEYCSLLVYPVLILFRFIFVCTQ 65
I + + I+ + S C+ ++ H +HS E+++PC YC V+P L +R
Sbjct: 16 IVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCE-KVFP-LAEYRT------ 67
Query: 66 GSADSHKHHLKDHVNKIHLHPKTFSCNSCGQTWLGYTSWKQHVAA 110
KH + H + + C +CG++++ Y H+ +
Sbjct: 68 ------KHEIH------HTGERRYQCLACGKSFINYQFMSSHIKS 100
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 25/55 (45%)
Query: 338 KRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTF 392
K + H + G + Y C C + LR+H H+ E+ +PC C++ F
Sbjct: 6 KVKHDDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVF 60
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Query: 167 YVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSY 224
Y+C + C R + + L RH + H+ + Y C C +F T+H HTG Y
Sbjct: 23 YIC--IVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIH-HTGERRY 79
Query: 225 PCTQCPGKFYSAYELRQHVRQHTDERP 251
C C F + + H++ + P
Sbjct: 80 QCLACGKSFINYQFMSSHIKSVHSQDP 106
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Query: 298 YVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSY 355
Y+C + C R + + L RH + H+ + Y C C +F T+H HTG Y
Sbjct: 23 YIC--IVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIH-HTGERRY 79
Query: 356 PCTQCPGKFYSAYELRQHVRQHTDERP 382
C C F + + H++ + P
Sbjct: 80 QCLACGKSFINYQFMSSHIKSVHSQDP 106
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 351 GSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRKV 396
GS S C+ C F S Y L H+R HT E+P+ C C+ +K
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKT 46
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 220 GSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQ 258
GS S C+ C F S Y L H+R HT E+P+ C C+
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCE 39
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 27 FIQVHLRLHSGERRFPCEYCSLLV 50
++ +HLR H+GE+ + CE+C
Sbjct: 19 YLNIHLRTHTGEKPYKCEFCEYAA 42
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 224 YPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRR 263
+ C C F + L H+R HT E+PF C +C R F R
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 43
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 355 YPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRR 394
+ C C F + L H+R HT E+PF C +C R F R
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 43
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQH 242
+ C +C F+ LT H+ R HTG + C C KF + E ++H
Sbjct: 4 FQCRICMRNFSRSDHLTTHI-RTHTGEKPFACDICGRKFARSDERKRH 50
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQH 373
+ C +C F+ LT H+ R HTG + C C KF + E ++H
Sbjct: 4 FQCRICMRNFSRSDHLTTHI-RTHTGEKPFACDICGRKFARSDERKRH 50
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 224 YPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTF 261
Y C +C F + +L +H R HT E+P+ C C + F
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAF 56
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 355 YPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTF 392
Y C +C F + +L +H R HT E+P+ C C + F
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAF 56
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 194 QYTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERP 251
+Y C CG F+ L++H R HTG Y C +C F L H R HT P
Sbjct: 18 RYKCDECGKSFSHSSDLSKHR-RTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 325 QYTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERP 382
+Y C CG F+ L++H R HTG Y C +C F L H R HT P
Sbjct: 18 RYKCDECGKSFSHSSDLSKHR-RTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERP 251
Y C C F K L H +HTG Y C C +F L+ H R H+ E+P
Sbjct: 18 YKCDRCQASFRYKGNLASHKT-VHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERP 382
Y C C F K L H +HTG Y C C +F L+ H R H+ E+P
Sbjct: 18 YKCDRCQASFRYKGNLASHKT-VHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 17/72 (23%)
Query: 224 YPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQE 283
Y C +C F L H HT E+P+ C +C F R P
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNR-----------------PAN 60
Query: 284 LISHSSYHGGEE 295
L +H+ H GE+
Sbjct: 61 LKTHTRIHSGEK 72
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 355 YPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRR 394
Y C +C F L H HT E+P+ C +C F R
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNR 57
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTD 248
Y C CG F+ L QH R+HTG Y C +C F L H R HT
Sbjct: 15 YGCVECGKAFSRSSILVQH-QRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS 67
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTD 379
Y C CG F+ L QH R+HTG Y C +C F L H R HT
Sbjct: 15 YGCVECGKAFSRSSILVQH-QRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS 67
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 224 YPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRK 264
Y C +C F + L QH R HT E+P+ C C + F +
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQN 55
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 355 YPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRK 395
Y C +C F + L QH R HT E+P+ C C + F +
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQN 55
>pdb|3P1V|A Chain A, Crystal Structure Of A Metallo-Endopeptidases
(Bacova_00663) From Bacteroides Ovatus At 1.93 A
Resolution
pdb|3P1V|B Chain B, Crystal Structure Of A Metallo-Endopeptidases
(Bacova_00663) From Bacteroides Ovatus At 1.93 A
Resolution
Length = 407
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 355 YPCTQCPGKFYSA---YELRQHVRQHTDERPFPCPVCQRTFRRKV 396
YP G YSA Y R T+E P CPVCQR RR +
Sbjct: 358 YPVGVYEGGGYSAKGIYRPAYDCRXKTNEYPEFCPVCQRAIRRXI 402
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 224 YPCTQCPGKFYSA---YELRQHVRQHTDERPFPCPVCQRTFRR 263
YP G YSA Y R T+E P CPVCQR RR
Sbjct: 358 YPVGVYEGGGYSAKGIYRPAYDCRXKTNEYPEFCPVCQRAIRR 400
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 229 CPGKFYSAYELRQHVRQHTDERPFPCP--VCQRTFRR 263
C ++ + L+ H R HT E+PF C C+R F R
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 360 CPGKFYSAYELRQHVRQHTDERPFPCP--VCQRTFRR 394
C ++ + L+ H R HT E+PF C C+R F R
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 200 CGHMFTCKRRLTQH--LARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
CG +F+ ++ L H +H S S P C F L++H++ H+D R + C
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 71
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 331 CGHMFTCKRRLTQH--LARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
CG +F+ ++ L H +H S S P C F L++H++ H+D R + C
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 71
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 16/78 (20%)
Query: 244 RQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVCNHM 303
R HT E+P+ C C +TFR+K L F + P +VC+
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAA--------------FVCS-- 51
Query: 304 QCTRRFHSASLLARHVST 321
+C + F + +ARH
Sbjct: 52 KCGKTFTRRNTMARHADN 69
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 375 RQHTDERPFPCPVCQRTFRRK 395
R HT E+P+ C C +TFR+K
Sbjct: 8 RTHTGEKPYACSHCDKTFRQK 28
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 215 ARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDER----PFPCPVCQRTFRRK 264
R HTG Y C+ C F L H +++ D F C C +TF R+
Sbjct: 7 GRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRR 60
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 346 ARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDER----PFPCPVCQRTFRRK 395
R HTG Y C+ C F L H +++ D F C C +TF R+
Sbjct: 7 GRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRR 60
>pdb|4DF9|A Chain A, Crystal Structure Of A Putative Peptidase (Bf3526) From
Bacteroides Fragilis Nctc 9343 At 2.17 A Resolution
pdb|4DF9|B Chain B, Crystal Structure Of A Putative Peptidase (Bf3526) From
Bacteroides Fragilis Nctc 9343 At 2.17 A Resolution
pdb|4DF9|C Chain C, Crystal Structure Of A Putative Peptidase (Bf3526) From
Bacteroides Fragilis Nctc 9343 At 2.17 A Resolution
pdb|4DF9|D Chain D, Crystal Structure Of A Putative Peptidase (Bf3526) From
Bacteroides Fragilis Nctc 9343 At 2.17 A Resolution
pdb|4DF9|E Chain E, Crystal Structure Of A Putative Peptidase (Bf3526) From
Bacteroides Fragilis Nctc 9343 At 2.17 A Resolution
pdb|4DF9|F Chain F, Crystal Structure Of A Putative Peptidase (Bf3526) From
Bacteroides Fragilis Nctc 9343 At 2.17 A Resolution
Length = 409
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 355 YPCTQCPGKFYSAYELRQHV---RQHTDERPFPCPVCQRTFRRKV 396
YP G YSA + + R T+E P CPVCQR +R +
Sbjct: 359 YPIGVYEGGGYSAKGIYRPAFDCRXRTNEYPTFCPVCQRAIQRII 403
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 224 YPCTQCPGKFYSAYELRQHV---RQHTDERPFPCPVCQRTFRR 263
YP G YSA + + R T+E P CPVCQR +R
Sbjct: 359 YPIGVYEGGGYSAKGIYRPAFDCRXRTNEYPTFCPVCQRAIQR 401
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 215 ARLHTGSLSYPCTQCPGKFYSAYELRQHVRQ-HTDE-RPFPCPVCQRTFRRK 264
R H+G Y C C +F + ++ H+ Q HT+ F CP C RK
Sbjct: 7 GRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARK 58
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 346 ARLHTGSLSYPCTQCPGKFYSAYELRQHVRQ-HTDE-RPFPCPVCQRTFRRK 395
R H+G Y C C +F + ++ H+ Q HT+ F CP C RK
Sbjct: 7 GRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARK 58
>pdb|2ELX|A Chain A, Solution Structure Of The 8th C2h2 Zinc Finger Of Mouse
Zinc Finger Protein 406
Length = 35
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 219 TGSLSYPCTQCPGKFYSAYELRQHVRQ 245
+GS Y C C KF S+ LR H+R+
Sbjct: 3 SGSSGYVCALCLKKFVSSIRLRSHIRE 29
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 350 TGSLSYPCTQCPGKFYSAYELRQHVRQ 376
+GS Y C C KF S+ LR H+R+
Sbjct: 3 SGSSGYVCALCLKKFVSSIRLRSHIRE 29
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTG 220
Y C CG F K LTQH R+HTG
Sbjct: 13 YRCGECGKAFAQKANLTQHQ-RIHTG 37
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTG 351
Y C CG F K LTQH R+HTG
Sbjct: 13 YRCGECGKAFAQKANLTQHQ-RIHTG 37
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTG 220
Y C+ CG +FT LT H R+HTG
Sbjct: 13 YKCNECGKVFTQNSHLTNHW-RIHTG 37
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTG 351
Y C+ CG +FT LT H R+HTG
Sbjct: 13 YKCNECGKVFTQNSHLTNHW-RIHTG 37
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTG 220
+ CH CG FT K L QH R+HTG
Sbjct: 13 HQCHECGRGFTLKSHLNQH-QRIHTG 37
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTG 351
+ CH CG FT K L QH R+HTG
Sbjct: 13 HQCHECGRGFTLKSHLNQH-QRIHTG 37
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.331 0.139 0.476
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,750,374
Number of Sequences: 62578
Number of extensions: 510949
Number of successful extensions: 2282
Number of sequences better than 100.0: 105
Number of HSP's better than 100.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1551
Number of HSP's gapped (non-prelim): 586
length of query: 410
length of database: 14,973,337
effective HSP length: 101
effective length of query: 309
effective length of database: 8,652,959
effective search space: 2673764331
effective search space used: 2673764331
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (25.0 bits)