RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12647
(410 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 98.3 bits (246), Expect = 2e-24
Identities = 64/211 (30%), Positives = 89/211 (42%), Gaps = 30/211 (14%)
Query: 178 FHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGK-FY 234
+S + + Y C CG F+ L +H R HTG Y C +C GK F
Sbjct: 3 EFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQ-RTHTGEKPYKCPEC-GKSFS 60
Query: 235 SAYELRQHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGE 294
+L +H R HT E+P+ CP C ++F ++ L +H H G
Sbjct: 61 DKKDLTRHQRTHTGEKPYKCPECGKSFSQRA-----------------NLRAHQRTHTG- 102
Query: 295 ERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGS 352
E+ Y C +C + F + L H TH + Y C CG F+ + L H R HTG
Sbjct: 103 EKPYACP--ECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQ-RTHTGE 159
Query: 353 LSYPCTQCPGK-FYSAYELRQHVRQHTDERP 382
Y C +C GK F L H R HT ++
Sbjct: 160 KPYKCPEC-GKSFSRRDALNVHQRTHTGKKT 189
Score = 97.1 bits (243), Expect = 6e-24
Identities = 60/195 (30%), Positives = 80/195 (41%), Gaps = 26/195 (13%)
Query: 204 FTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRR 263
L G Y C +C F + L +H R HT E+P+ CP C ++F
Sbjct: 3 EFGSSSSVAQA-ALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSD 61
Query: 264 KGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTHA 323
K +L H H GE + Y C +C + F + L H TH
Sbjct: 62 KK-----------------DLTRHQRTHTGE-KPYKCP--ECGKSFSQRANLRAHQRTHT 101
Query: 324 IQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGK-FYSAYELRQHVRQHTDE 380
+ Y C CG F+ L H R HTG Y C +C GK F L H R HT E
Sbjct: 102 GEKPYACPECGKSFSQLAHLRAHQ-RTHTGEKPYKCPEC-GKSFSREDNLHTHQRTHTGE 159
Query: 381 RPFPCPVCQRTFRRK 395
+P+ CP C ++F R+
Sbjct: 160 KPYKCPECGKSFSRR 174
Score = 65.2 bits (160), Expect = 1e-12
Identities = 59/240 (24%), Positives = 80/240 (33%), Gaps = 77/240 (32%)
Query: 29 QVHLRLHSGERRFPCEYCSLLVYPVLILFRFIFVCTQGSADSHKHHLKDHVNKIHLHPKT 88
L GE+ + C C G + S HL +H + H K
Sbjct: 10 VAQAALEPGEKPYACPEC-------------------GKSFSRSDHLAEH-QRTHTGEKP 49
Query: 89 FSCNSCGQTWLGYTSWKQHVAACREKRRKETFPCKRCDERFSTRDGLESFTFSLRLFCLY 148
+ C CG++ FS +
Sbjct: 50 YKCPECGKS-------------------------------FSDKKD-------------- 64
Query: 149 FPQELISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTC 206
L H H G E+ Y C +C + F + L H TH + Y C CG F+
Sbjct: 65 ----LTRHQRTHTG-EKPYKCP--ECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQ 117
Query: 207 KRRLTQHLARLHTGSLSYPCTQCPGK-FYSAYELRQHVRQHTDERPFPCPVCQRTFRRKG 265
L H R HTG Y C +C GK F L H R HT E+P+ CP C ++F R+
Sbjct: 118 LAHLRAHQ-RTHTGEKPYKCPEC-GKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRD 175
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 80.7 bits (200), Expect = 4e-18
Identities = 52/237 (21%), Positives = 78/237 (32%), Gaps = 58/237 (24%)
Query: 154 ISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTHAIQYTCHMCGHMFTCKRRLTQH 213
+ + +RY+C+ CG + +L H
Sbjct: 1 MGEKALPVVY-KRYICSFAD--------------------------CGAAYNKNWKLQAH 33
Query: 214 LARLHTGSLSYPCTQCP-GK-FYSAYELRQHVRQHTDERPFPC--PVCQRTFRRKGLESF 269
L HTG +PC + K F S + L +H HT E+ F C C F K
Sbjct: 34 L-CKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKA---- 88
Query: 270 TFSLRLFCLYFPQELISHSSYHGGEERR-YVCNHMQCTRRFHSASLLARHVSTHAIQ--Y 326
+ H + + YVC+ C + F + L H +H Q Y
Sbjct: 89 -------------NMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPY 135
Query: 327 TCH--MCGHMFTCKRRLTQHLARLHTGSLSYPCTQCP--GKFYSAYELRQHVRQHTD 379
C C F+ RL +H ++H G C GK ++ Y L+ H D
Sbjct: 136 ECPHEGCDKRFSLPSRLKRH-EKVHAGYPCKKDDSCSFVGKTWTLY-LKHVAECHQD 190
Score = 77.6 bits (192), Expect = 5e-17
Identities = 47/193 (24%), Positives = 72/193 (37%), Gaps = 36/193 (18%)
Query: 216 RLHTGSLSYPC--TQCPGK-FYSAYELRQHVRQHTDERPFPC--PVCQRTFRRKGLESFT 270
L Y C C G + ++L+ H+ +HT E+PFPC C++ F
Sbjct: 5 ALPVVYKRYICSFADC-GAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLH----- 58
Query: 271 FSLRLFCLYFPQELISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTH----AIQY 326
L HS H GE + + C+ C RF + + + +H + Y
Sbjct: 59 ------------HLTRHSLTHTGE-KNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVY 105
Query: 327 TCHM--CGHMFTCKRRLTQHLARLHTGSLSYPCTQCP-GK-FYSAYELRQHVRQHT---D 379
CH CG F +L H HT L Y C K F L++H + H
Sbjct: 106 VCHFENCGKAFKKHNQLKVHQ-FSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 164
Query: 380 ERPFPCPVCQRTF 392
++ C +T+
Sbjct: 165 KKDDSCSFVGKTW 177
Score = 66.1 bits (162), Expect = 6e-13
Identities = 37/168 (22%), Positives = 55/168 (32%), Gaps = 33/168 (19%)
Query: 241 QHVRQHTDERPFPC--PVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRY 298
+ + C C + + +L +H H GE + +
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNW-----------------KLQAHLCKHTGE-KPF 43
Query: 299 VCNHMQCTRRFHSASLLARHVSTHAIQ--YTC--HMCGHMFTCKRRLTQHLARLHTG--S 352
C C + F S L RH TH + +TC C FT K + +H
Sbjct: 44 PCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHF-NRFHNIKI 102
Query: 353 LSYPCT--QCPGK-FYSAYELRQHVRQHTDERPFPC--PVCQRTFRRK 395
Y C C GK F +L+ H HT + P+ C C + F
Sbjct: 103 CVYVCHFENC-GKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLP 149
Score = 53.4 bits (129), Expect = 1e-08
Identities = 46/242 (19%), Positives = 72/242 (29%), Gaps = 78/242 (32%)
Query: 31 HLRLHSGERRFPCEYCSLLVYPVLILFRFIFVCTQGSADSHKHHLKDHVNKIHLHPKTFS 90
L +R+ C + C G+A + L+ H H K F
Sbjct: 3 EKALPVVYKRYICSFAD---------------C--GAAYNKNWKLQAH-LCKHTGEKPFP 44
Query: 91 CNSCGQTWLGYTSWKQHVAACREKRRKETFPCKRCDERFSTRDGLESFTFSLRLFCLYFP 150
C G C++ F++
Sbjct: 45 CKEEG-----------------------------CEKGFTSLHH---------------- 59
Query: 151 QELISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTH----AIQYTCHM--CGHMF 204
L HS H G E+ + C+ C RF + + + +H + Y CH CG F
Sbjct: 60 --LTRHSLTHTG-EKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAF 116
Query: 205 TCKRRLTQHLARLHTGSLSYPCTQCP-GK-FYSAYELRQHVRQHT---DERPFPCPVCQR 259
+L H HT L Y C K F L++H + H ++ C +
Sbjct: 117 KKHNQLKVHQ-FSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGK 175
Query: 260 TF 261
T+
Sbjct: 176 TW 177
Score = 49.9 bits (120), Expect = 2e-07
Identities = 51/227 (22%), Positives = 73/227 (32%), Gaps = 74/227 (32%)
Query: 29 QVHLRLHSGERRFPCEYCSLLVYPVLILFRFIFVCTQGSADSHKHHLKDHVNKIHLHPKT 88
Q HL H+GE+ FPC+ C + HHL H H K
Sbjct: 31 QAHLCKHTGEKPFPCKEEG---------------C--EKGFTSLHHLTRHS-LTHTGEKN 72
Query: 89 FSCNSCGQTWLGYTSWKQHVAACREKRRKETFPCKRCDERFSTRDGLESFTFSLRLFCLY 148
F+C+S G CD RF+T+
Sbjct: 73 FTCDSDG-----------------------------CDLRFTTK---------------- 87
Query: 149 FPQELISHSSYHGGEERR-YVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCH--MCGHM 203
+ H + + YVC+ C + F + L H +H Q Y C C
Sbjct: 88 --ANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKR 145
Query: 204 FTCKRRLTQHLARLHTGSLSYPCTQCP--GKFYSAYELRQHVRQHTD 248
F+ RL +H ++H G C GK ++ Y L+ H D
Sbjct: 146 FSLPSRLKRH-EKVHAGYPCKKDDSCSFVGKTWTLY-LKHVAECHQD 190
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 73.8 bits (182), Expect = 5e-16
Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 33/171 (19%)
Query: 195 YTCHMCGHMFTCKRRLTQHLA--RLHTGSLSYPCTQC----PGK-FYSAYELRQHVRQHT 247
C F + +L H+ +H + C + F + Y L H+R+HT
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63
Query: 248 DERPFPCPV--CQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVCNHMQC 305
E+P C C++++ R L +H H G E+ Y+C H C
Sbjct: 64 GEKPHKCTFEGCRKSYSRLE-----------------NLKTHLRSHTG-EKPYMCEHEGC 105
Query: 306 TRRFHSASLLARHVS-THAIQ--YTCHM--CGHMFTCKRRLTQHLARLHTG 351
++ F +AS A+H + TH+ + Y C + C +T L +H+ + G
Sbjct: 106 SKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHV-KTVHG 155
Score = 56.1 bits (136), Expect = 8e-10
Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 19/115 (16%)
Query: 295 ERRYVCNHMQCTRRFHSASLLARHVSTHAIQ-----YTCHMCGHM-----FTCKRRLTQH 344
E + C++ F S L H+++ I + CH G F + L H
Sbjct: 1 ETDCRWD--GCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVH 58
Query: 345 LARLHTGSLSYPCT--QCPGKFYSAYE-LRQHVRQHTDERPFPC--PVCQRTFRR 394
+ R HTG + CT C K YS E L+ H+R HT E+P+ C C + F
Sbjct: 59 M-RRHTGEKPHKCTFEGC-RKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSN 111
Score = 51.4 bits (124), Expect = 3e-08
Identities = 34/179 (18%), Positives = 58/179 (32%), Gaps = 48/179 (26%)
Query: 224 YPCTQCPGKFYSAYELRQHVRQ---HTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYF 280
C +F S +L H+ H + + F C + + F +
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELR-----PFKAQ------ 52
Query: 281 PQELISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTHAIQYTCHMCGHMFTCKRR 340
L+ H H GE + + C C + + L H+
Sbjct: 53 -YMLVVHMRRHTGE-KPHKCTFEGCRKSYSRLENLKTHL--------------------- 89
Query: 341 LTQHLARLHTGSLSYPCTQ--CPGKFYSAYELRQH-VRQHTDERPFPCPV--CQRTFRR 394
R HTG Y C C F +A + +H R H++E+P+ C + C + +
Sbjct: 90 ------RSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTD 142
Score = 50.7 bits (122), Expect = 7e-08
Identities = 48/209 (22%), Positives = 71/209 (33%), Gaps = 65/209 (31%)
Query: 120 FPCKRCDERFSTRDGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVCNHMQCTRRFH 179
C + F +++ L S + HG + +VC+ C+R
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHI---------------HGE-RKEFVCHWGGCSR--- 44
Query: 180 SASLLARHVSTHAIQYTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT--QCPGKFYSAY 237
F + L H+ R HTG + CT C K YS
Sbjct: 45 --------------------ELRPFKAQYMLVVHM-RRHTGEKPHKCTFEGC-RKSYSRL 82
Query: 238 E-LRQHVRQHTDERPFPC--PVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSY-HGG 293
E L+ H+R HT E+P+ C C + F + H + H
Sbjct: 83 ENLKTHLRSHTGEKPYMCEHEGCSKAFSNAS-----------------DRAKHQNRTHSN 125
Query: 294 EERRYVCNHMQCTRRFHSASLLARHVSTH 322
E+ YVC CT+R+ S L +HV T
Sbjct: 126 -EKPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 41.0 bits (97), Expect = 1e-04
Identities = 36/166 (21%), Positives = 60/166 (36%), Gaps = 39/166 (23%)
Query: 70 SHKHHLKDHVNKIHLHP--KTFSCNSCGQTWLGYTSWKQHVAACREKRRKET------FP 121
+ L H+N H+H K F C+ G + + A
Sbjct: 14 DSQEQLVHHINSEHIHGERKEFVCHWGGCSREL----RPFKAQYMLVVHMRRHTGEKPHK 69
Query: 122 CKR--CDERFSTRDGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVCNHMQCTRRFH 179
C C + +S + L +H H GE + Y+C H C++ F
Sbjct: 70 CTFEGCRKSYSRLENL------------------KTHLRSHTGE-KPYMCEHEGCSKAFS 110
Query: 180 SASLLARHVS-THAIQ--YTCHM--CGHMFTCKRRLTQHLARLHTG 220
+AS A+H + TH+ + Y C + C +T L +H+ + G
Sbjct: 111 NASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHV-KTVHG 155
Score = 32.2 bits (74), Expect = 0.14
Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 3/44 (6%)
Query: 355 YPCTQCPGKFYSAYELRQHVRQ---HTDERPFPCPVCQRTFRRK 395
C +F S +L H+ H + + F C + +
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELR 47
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 71.8 bits (177), Expect = 1e-15
Identities = 40/139 (28%), Positives = 59/139 (42%), Gaps = 25/139 (17%)
Query: 218 HTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFC 277
+GS C C KF S Y L+ H R+HT E+PF CP C + + RK
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKE------------ 49
Query: 278 LYFPQELISH---SSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCG 332
L+ H + + E+ + C+ C F L H+ +H + Y C C
Sbjct: 50 -----NLLEHEARNCMNRS-EQVFTCS--VCQETFRRRMELRLHMVSHTGEMPYKCSSCS 101
Query: 333 HMFTCKRRLTQHLARLHTG 351
F K+ L H+ +LH+G
Sbjct: 102 QQFMQKKDLQSHMIKLHSG 120
Score = 64.8 bits (159), Expect = 4e-13
Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 6/106 (5%)
Query: 164 ERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQH--LARLHT 219
C C ++F S L H H + + C CG + K L +H ++
Sbjct: 5 SSGVECP--TCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 220 GSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRKG 265
+ C+ C F ELR H+ HT E P+ C C + F +K
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKK 108
Score = 64.4 bits (158), Expect = 5e-13
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 6/105 (5%)
Query: 295 ERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQH--LARLHT 350
C C ++F S L H H + + C CG + K L +H ++
Sbjct: 5 SSGVECP--TCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 351 GSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRK 395
+ C+ C F ELR H+ HT E P+ C C + F +K
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQK 107
Score = 50.2 bits (121), Expect = 6e-08
Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 10/104 (9%)
Query: 153 LISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTHAIQ-----YTCHMCGHMFTCK 207
L H+ H GE + + C +C + + L H + + + +TC +C F +
Sbjct: 23 LKVHNRKHTGE-KPFECP--KCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRR 79
Query: 208 RRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQH-VRQHTDER 250
L H+ HTG + Y C+ C +F +L+ H ++ H+
Sbjct: 80 MELRLHM-VSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
Score = 45.6 bits (109), Expect = 2e-06
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 349 HTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRK 395
+GS C C KF S Y L+ H R+HT E+PF CP C + + RK
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRK 48
Score = 41.7 bits (99), Expect = 5e-05
Identities = 30/143 (20%), Positives = 51/143 (35%), Gaps = 37/143 (25%)
Query: 87 KTFSCNSCGQTWLGYTSWKQHVAACREKRRKET----FPCKRCDERFSTRDGLESFTFSL 142
C +C + +L K H RK T F C +C + + ++ L
Sbjct: 6 SGVECPTCHKKFLSKYYLKVH-------NRKHTGEKPFECPKCGKCYFRKENL------- 51
Query: 143 RLFCLYFPQELISH---SSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTC 197
+ H + + E + + C+ C F L H+ +H + Y C
Sbjct: 52 -----------LEHEARNCMNRSE-QVFTCS--VCQETFRRRMELRLHMVSHTGEMPYKC 97
Query: 198 HMCGHMFTCKRRLTQHLARLHTG 220
C F K+ L H+ +LH+G
Sbjct: 98 SSCSQQFMQKKDLQSHMIKLHSG 120
Score = 28.2 bits (64), Expect = 1.9
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 21/70 (30%)
Query: 30 VHLRLHSGERRFPCEYCSLLVYPVLILFRFIFVCTQGSADSHKHHLKDH--VNKIHLHPK 87
VH R H+GE+ F C C G K +L +H N ++ +
Sbjct: 25 VHNRKHTGEKPFECPKC-------------------GKCYFRKENLLEHEARNCMNRSEQ 65
Query: 88 TFSCNSCGQT 97
F+C+ C +T
Sbjct: 66 VFTCSVCQET 75
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 67.5 bits (166), Expect = 4e-14
Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 6/108 (5%)
Query: 163 EERRYVCNHMQCTRRFHSASLLARHVSTHAIQ-YTCHMCGHMFTCKRRLTQHLARLHTGS 221
E R C H CT+ F S + +H+ TH + + C CG F +L +H +HTG
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQ-LVHTGE 60
Query: 222 LSYPCT--QCPGKFYSAYELRQHVRQHTDERPFPCPV--CQRTFRRKG 265
+ CT C +F + LR HVR HT +RP+ CP C + F +
Sbjct: 61 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQST 108
Score = 67.2 bits (165), Expect = 6e-14
Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 6/107 (5%)
Query: 294 EERRYVCNHMQCTRRFHSASLLARHVSTHAIQ-YTCHMCGHMFTCKRRLTQHLARLHTGS 352
E R C H CT+ F S + +H+ TH + + C CG F +L +H +HTG
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQ-LVHTGE 60
Query: 353 LSYPCT--QCPGKFYSAYELRQHVRQHTDERPFPCPV--CQRTFRRK 395
+ CT C +F + LR HVR HT +RP+ CP C + F +
Sbjct: 61 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQS 107
Score = 56.4 bits (137), Expect = 4e-10
Identities = 37/144 (25%), Positives = 53/144 (36%), Gaps = 30/144 (20%)
Query: 248 DERPFPCPV--CQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVCNHMQC 305
+ R CP C + FR + H HG R +VC +C
Sbjct: 2 EPRTIACPHKGCTKMFRDNS-----------------AMRKHLHTHG--PRVHVCA--EC 40
Query: 306 TRRFHSASLLARHVSTHAIQ--YTCHM--CGHMFTCKRRLTQHLARLHTGSLSYPC--TQ 359
+ F +S L RH H + + C CG F+ L H+ R+HTG Y C
Sbjct: 41 GKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHV-RIHTGDRPYVCPFDG 99
Query: 360 CPGKFYSAYELRQHVRQHTDERPF 383
C KF + L+ H+ H +
Sbjct: 100 CNKKFAQSTNLKSHILTHAKAKNN 123
Score = 52.1 bits (126), Expect = 1e-08
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 11/106 (10%)
Query: 153 LISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHM--CGHMFTCKR 208
+ H HG R +VC +C + F +S L RH H + + C CG F+
Sbjct: 23 MRKHLHTHG--PRVHVCA--ECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDF 78
Query: 209 RLTQHLARLHTGSLSYPC--TQCPGKFYSAYELRQHVRQHTDERPF 252
L H+ R+HTG Y C C KF + L+ H+ H +
Sbjct: 79 NLRTHV-RIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 68.1 bits (167), Expect = 6e-14
Identities = 38/198 (19%), Positives = 65/198 (32%), Gaps = 58/198 (29%)
Query: 201 GHMFTCKRRLTQHLA--RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPF------ 252
G + + + Q L+ + LS P C F + +EL HV P
Sbjct: 1 GSSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC 60
Query: 253 ---PCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVCNHMQCTRRF 309
CP ++F+ K +L++H H G E+ + C C + F
Sbjct: 61 YWEECPREGKSFKAKY-----------------KLVNHIRVHTG-EKPFPCPFPGCGKIF 102
Query: 310 HSASLLARHVSTHAIQYTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT--QCPGKFYSA 367
+ L H R HTG + C C +F ++
Sbjct: 103 ARSENLKIHK---------------------------RTHTGEKPFKCEFEGCDRRFANS 135
Query: 368 YELRQHVRQHTDERPFPC 385
+ ++H+ HT ++ P
Sbjct: 136 SDRKKHMHVHTSDKSGPS 153
Score = 66.9 bits (164), Expect = 2e-13
Identities = 37/161 (22%), Positives = 55/161 (34%), Gaps = 35/161 (21%)
Query: 178 FHSASLLARHVSTHAI-----QYTCHMCGHMFTCKRRLTQHLARLHTG---------SLS 223
S + + +S I C F+ L H+ +
Sbjct: 4 GSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHV-TMEHVGGPEQNNHVCYW 62
Query: 224 YPCTQCPGKFYSAYELRQHVRQHTDERPFPCPV--CQRTFRRKGLESFTFSLRLFCLYFP 281
C + F + Y+L H+R HT E+PFPCP C + F R
Sbjct: 63 EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSE---------------- 106
Query: 282 QELISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTH 322
L H H G E+ + C C RRF ++S +H+ H
Sbjct: 107 -NLKIHKRTHTG-EKPFKCEFEGCDRRFANSSDRKKHMHVH 145
Score = 51.5 bits (124), Expect = 3e-08
Identities = 24/102 (23%), Positives = 36/102 (35%), Gaps = 17/102 (16%)
Query: 309 FHSASLLARHVSTHAI-----QYTCHMCGHMFTCKRRLTQHLARLHTG---------SLS 354
S + + +S I C F+ L H+ +
Sbjct: 4 GSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHV-TMEHVGGPEQNNHVCYW 62
Query: 355 YPCTQCPGKFYSAYELRQHVRQHTDERPFPCPV--CQRTFRR 394
C + F + Y+L H+R HT E+PFPCP C + F R
Sbjct: 63 EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFAR 104
Score = 51.1 bits (123), Expect = 4e-08
Identities = 37/162 (22%), Positives = 62/162 (38%), Gaps = 31/162 (19%)
Query: 105 KQHVAACREKRRKETFPCKRCDERFSTRDGLESFTFSLRLFCLYFPQELISHSSYHGGE- 163
KQ ++ + + P K CD FST EL++H +
Sbjct: 11 KQELSCKWIDEAQLSRPKKSCDRTFSTMH------------------ELVTHVTMEHVGG 52
Query: 164 --ERRYVCNHMQCTRR---FHSASLLARHVSTHAIQ--YTCHM--CGHMFTCKRRLTQHL 214
+ +VC +C R F + L H+ H + + C CG +F L H
Sbjct: 53 PEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHK 112
Query: 215 ARLHTGSLSYPCT--QCPGKFYSAYELRQHVRQHTDERPFPC 254
R HTG + C C +F ++ + ++H+ HT ++ P
Sbjct: 113 -RTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153
Score = 46.1 bits (110), Expect = 2e-06
Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 11/75 (14%)
Query: 332 GHMFTCKRRLTQHLA--RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPF------ 383
G + + + Q L+ + LS P C F + +EL HV P
Sbjct: 1 GSSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC 60
Query: 384 ---PCPVCQRTFRRK 395
CP ++F+ K
Sbjct: 61 YWEECPREGKSFKAK 75
Score = 32.6 bits (75), Expect = 0.089
Identities = 31/176 (17%), Positives = 47/176 (26%), Gaps = 59/176 (33%)
Query: 30 VHLRLHSGERRFPCEYCSLLVYPVLILFRFIFVCTQGSADSHKHHLKDHVNKIH------ 83
+ + P + C S H L HV H
Sbjct: 15 SCKWIDEAQLSRPKKSC-------------------DRTFSTMHELVTHVTMEHVGGPEQ 55
Query: 84 --LHPKTFSCNSCGQTWLGYTSWKQHVAACREKRRKET----FPCKR--CDERFSTRDGL 135
C G+++ H+ R T FPC C + F+
Sbjct: 56 NNHVCYWEECPREGKSFKAKYKLVNHI-------RVHTGEKPFPCPFPGCGKIFARS--- 105
Query: 136 ESFTFSLRLFCLYFPQELISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTH 191
+ L H H GE + + C C RRF ++S +H+ H
Sbjct: 106 ---------------ENLKIHKRTHTGE-KPFKCEFEGCDRRFANSSDRKKHMHVH 145
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 64.8 bits (159), Expect = 4e-13
Identities = 36/108 (33%), Positives = 51/108 (47%), Gaps = 7/108 (6%)
Query: 164 ERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHM--CGHMFTCKRRLTQHLARLHT 219
+R ++C + C +R+ S L H H + Y C C F+ +L +H R HT
Sbjct: 4 KRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQ-RRHT 62
Query: 220 GSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC--PVCQRTFRRKG 265
G + C C KF + L+ H R HT E+PF C P CQ+ F R
Sbjct: 63 GVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSD 110
Score = 64.1 bits (157), Expect = 7e-13
Identities = 36/107 (33%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 295 ERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHM--CGHMFTCKRRLTQHLARLHT 350
+R ++C + C +R+ S L H H + Y C C F+ +L +H R HT
Sbjct: 4 KRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQ-RRHT 62
Query: 351 GSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC--PVCQRTFRRK 395
G + C C KF + L+ H R HT E+PF C P CQ+ F R
Sbjct: 63 GVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARS 109
Score = 63.7 bits (156), Expect = 1e-12
Identities = 37/132 (28%), Positives = 54/132 (40%), Gaps = 23/132 (17%)
Query: 195 YTC--HMCGHMFTCKRRLTQHLARLHTGSLSYPCT--QCPGKFYSAYELRQHVRQHTDER 250
+ C C + L H R HTG Y C C +F + +L++H R+HT +
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHS-RKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVK 65
Query: 251 PFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVCNHMQCTRRFH 310
PF C CQR F R L +H+ H G E+ + C C ++F
Sbjct: 66 PFQCKTCQRKFSRSD-----------------HLKTHTRTHTG-EKPFSCRWPSCQKKFA 107
Query: 311 SASLLARHVSTH 322
+ L RH + H
Sbjct: 108 RSDELVRHHNMH 119
Score = 56.8 bits (138), Expect = 2e-10
Identities = 39/137 (28%), Positives = 53/137 (38%), Gaps = 25/137 (18%)
Query: 247 TDERPFPC--PVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVCNHMQ 304
+++RPF C P C + + + L HS H GE + Y C+
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLS-----------------HLQMHSRKHTGE-KPYQCDFKD 43
Query: 305 CTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPC--TQC 360
C RRF + L RH H + C C F+ L H R HTG + C C
Sbjct: 44 CERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHT-RTHTGEKPFSCRWPSC 102
Query: 361 PGKFYSAYELRQHVRQH 377
KF + EL +H H
Sbjct: 103 QKKFARSDELVRHHNMH 119
Score = 52.9 bits (128), Expect = 5e-09
Identities = 33/98 (33%), Positives = 41/98 (41%), Gaps = 6/98 (6%)
Query: 153 LISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRL 210
L HS H GE + Y C+ C RRF + L RH H + C C F+ L
Sbjct: 24 LQMHSRKHTGE-KPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHL 82
Query: 211 TQHLARLHTGSLSYPC--TQCPGKFYSAYELRQHVRQH 246
H R HTG + C C KF + EL +H H
Sbjct: 83 KTHT-RTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 58.7 bits (143), Expect = 2e-11
Identities = 29/71 (40%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT--QCPGKFYSAYELRQHVRQHTDERPF 252
CG +T L HL R HTG Y C C KF + EL +H R+HT RPF
Sbjct: 8 CDYAGCGKTYTKSSHLKAHL-RTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPF 66
Query: 253 PCPVCQRTFRR 263
C C R F R
Sbjct: 67 QCQKCDRAFSR 77
Score = 58.7 bits (143), Expect = 2e-11
Identities = 29/71 (40%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT--QCPGKFYSAYELRQHVRQHTDERPF 383
CG +T L HL R HTG Y C C KF + EL +H R+HT RPF
Sbjct: 8 CDYAGCGKTYTKSSHLKAHL-RTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPF 66
Query: 384 PCPVCQRTFRR 394
C C R F R
Sbjct: 67 QCQKCDRAFSR 77
Score = 46.8 bits (112), Expect = 4e-07
Identities = 21/102 (20%), Positives = 32/102 (31%), Gaps = 20/102 (19%)
Query: 245 QHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVCNHMQ 304
+ T C +T+ + L +H H GE + Y C+
Sbjct: 1 KRTATHTCDYAGCGKTYTKSS-----------------HLKAHLRTHTGE-KPYHCDWDG 42
Query: 305 CTRRFHSASLLARHVSTH--AIQYTCHMCGHMFTCKRRLTQH 344
C +F + L RH H + C C F+ L H
Sbjct: 43 CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALH 84
Score = 41.4 bits (98), Expect = 3e-05
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 153 LISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTH--AIQYTCHMCGHMFTCKRRL 210
L +H H GE + Y C+ C +F + L RH H + C C F+ L
Sbjct: 23 LKAHLRTHTGE-KPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHL 81
Query: 211 TQH 213
H
Sbjct: 82 ALH 84
Score = 27.5 bits (62), Expect = 2.4
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 29 QVHLRLHSGERRFPCEYC 46
H R H+G R F C+ C
Sbjct: 54 TRHYRKHTGHRPFQCQKC 71
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 58.2 bits (142), Expect = 4e-11
Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 6/97 (6%)
Query: 291 HGGEERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARL 348
G + C C + F L H+ H Y C C + L +HL R+
Sbjct: 3 SGSS-GPHKCE--VCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHL-RI 58
Query: 349 HTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
H+ + C CP ++ +L H+R HT +
Sbjct: 59 HSDERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 57.0 bits (139), Expect = 1e-10
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
+ C +CG F+ K +L H+ R HTG Y C C + L +H+R H+DERPF C
Sbjct: 9 HKCEVCGKCFSRKDKLKTHM-RCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 255 PVCQRTFRRK 264
+C R
Sbjct: 68 QICPYASRNS 77
Score = 57.0 bits (139), Expect = 1e-10
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
+ C +CG F+ K +L H+ R HTG Y C C + L +H+R H+DERPF C
Sbjct: 9 HKCEVCGKCFSRKDKLKTHM-RCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 386 PVCQRTFRRK 395
+C R
Sbjct: 68 QICPYASRNS 77
Score = 46.3 bits (111), Expect = 7e-07
Identities = 25/106 (23%), Positives = 36/106 (33%), Gaps = 22/106 (20%)
Query: 218 HTGSLSYPCTQCPGK-FYSAYELRQHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLF 276
S + C C GK F +L+ H+R HT +P+ C C
Sbjct: 3 SGSSGPHKCEVC-GKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSS----------- 50
Query: 277 CLYFPQELISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTH 322
L H H ER + C C ++S L H+ +H
Sbjct: 51 ------SLNKHLRIHSD-ERPFKCQ--ICPYASRNSSQLTVHLRSH 87
Score = 39.7 bits (94), Expect = 1e-04
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 153 LISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRL 210
L +H H G + Y C C +S L +H+ H+ + + C +C + +L
Sbjct: 24 LKTHMRCHTGV-KPYKCK--TCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQL 80
Query: 211 TQHLARLHTGSLSYPC 226
T HL R HTG
Sbjct: 81 TVHL-RSHTGDSGPSS 95
Score = 27.0 bits (61), Expect = 3.8
Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 20/67 (29%)
Query: 29 QVHLRLHSGERRFPCEYCSLLVYPVLILFRFIFVCTQGSADSHKHHLKDHVNKIHLHPKT 88
+ H+R H+G + + C+ C A + L H +IH +
Sbjct: 25 KTHMRCHTGVKPYKCKTC-------------------DYAAADSSSLNKH-LRIHSDERP 64
Query: 89 FSCNSCG 95
F C C
Sbjct: 65 FKCQICP 71
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 57.9 bits (141), Expect = 4e-11
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 164 ERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGS 221
ER Y C C RRF + L RH+ H Q + C +C F+ LT H+ R HTG
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTGE 60
Query: 222 LSYPCTQCPGKFYSAYELRQHVRQHTDER 250
+ C C KF + E ++H + H ++
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 57.9 bits (141), Expect = 4e-11
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 295 ERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGS 352
ER Y C C RRF + L RH+ H Q + C +C F+ LT H+ R HTG
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTGE 60
Query: 353 LSYPCTQCPGKFYSAYELRQHVRQHTDER 381
+ C C KF + E ++H + H ++
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 54.0 bits (131), Expect = 1e-09
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 326 YTCHM--CGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPF 383
Y C + C F+ LT+H+ R+HTG + C C F + L H+R HT E+PF
Sbjct: 5 YACPVESCDRRFSQSGSLTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 384 PCPVCQRTFRR 394
C +C R F R
Sbjct: 64 ACDICGRKFAR 74
Score = 44.0 bits (105), Expect = 4e-06
Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 22/101 (21%)
Query: 224 YPC--TQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFP 281
Y C C +F + L +H+R HT ++PF C +C R F R
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSD---------------- 48
Query: 282 QELISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTH 322
L +H H G E+ + C+ C R+F + RH H
Sbjct: 49 -HLTTHIRTHTG-EKPFACD--ICGRKFARSDERKRHTKIH 85
Score = 27.8 bits (63), Expect = 1.6
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 20/65 (30%)
Query: 31 HLRLHSGERRFPCEYCSLLVYPVLILFRFIFVCTQGSADSHKHHLKDHVNKIHLHPKTFS 90
H+R+H+G++ F C C S HL H+ + H K F+
Sbjct: 25 HIRIHTGQKPFQCRIC-------------------MRNFSRSDHLTTHI-RTHTGEKPFA 64
Query: 91 CNSCG 95
C+ CG
Sbjct: 65 CDICG 69
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 58.2 bits (142), Expect = 7e-11
Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 8/103 (7%)
Query: 164 ERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGS 221
++ Y C QC + F S RH+S H Y C +CG F K L H+ ++HTG
Sbjct: 8 DKLYPC---QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM-KIHTGI 63
Query: 222 LSYPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRK 264
Y C C +F +HV + + + ++
Sbjct: 64 KPYECNICAKRFMWRDSFHRHV--TSCTKSYEAAKAEQNTTEA 104
Score = 58.2 bits (142), Expect = 7e-11
Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 8/103 (7%)
Query: 295 ERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGS 352
++ Y C QC + F S RH+S H Y C +CG F K L H+ ++HTG
Sbjct: 8 DKLYPC---QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM-KIHTGI 63
Query: 353 LSYPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRK 395
Y C C +F +HV + + + ++
Sbjct: 64 KPYECNICAKRFMWRDSFHRHV--TSCTKSYEAAKAEQNTTEA 104
Score = 54.8 bits (133), Expect = 9e-10
Identities = 33/128 (25%), Positives = 46/128 (35%), Gaps = 23/128 (17%)
Query: 216 RLHTGSLSYPCTQCPGK-FYSAYELRQHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLR 274
+G YPC QC GK F + +H+ H RP+ C VC + F+ K
Sbjct: 3 SGSSGDKLYPC-QC-GKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKH--------- 51
Query: 275 LFCLYFPQELISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTHAIQYTCHMCGHM 334
L+ H H G + Y CN C +RF RHV++ Y
Sbjct: 52 --------HLVGHMKIHTGI-KPYECN--ICAKRFMWRDSFHRHVTSCTKSYEAAKAEQN 100
Query: 335 FTCKRRLT 342
T +
Sbjct: 101 TTEASGPS 108
Score = 30.1 bits (69), Expect = 0.38
Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 25/108 (23%)
Query: 30 VHLRLHSGERRFPCEYCSLLVYPVLILFRFIFVCTQGSADSHKHHLKDHVNKIHLHPKTF 89
H+ +H G R + C C G KHHL H KIH K +
Sbjct: 27 RHMSMHLGLRPYGCGVC-------------------GKKFKMKHHLVGH-MKIHTGIKPY 66
Query: 90 SCNSCGQTWLGYTSWKQHVAACREKRRKETFPCKRCDERFSTRDGLES 137
CN C + ++ S+ +HV +C K ++ + ++ + G S
Sbjct: 67 ECNICAKRFMWRDSFHRHVTSC-TK----SYEAAKAEQNTTEASGPSS 109
Score = 26.6 bits (60), Expect = 5.8
Identities = 31/179 (17%), Positives = 48/179 (26%), Gaps = 73/179 (40%)
Query: 33 RLHSGERRFPCEYCSLLVYPVLILFRFIFVCTQGSADSHKHHLKDHVNKIHLHPKTFSCN 92
SG++ +PC+ C G + +HK H +HL + + C
Sbjct: 3 SGSSGDKLYPCQ-C-------------------GKSFTHKSQRDRH-MSMHLGLRPYGCG 41
Query: 93 SCGQTWLGYTSWKQHVAACREKRRKETFPCKRCDERFSTRDGLESFTFSLRLFCLYFPQE 152
CG+ + K H
Sbjct: 42 VCGKKF----KMKHH--------------------------------------------- 52
Query: 153 LISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTHAIQYTCHMCGHMFTCKRRLT 211
L+ H H G + Y CN C +RF RHV++ Y T +
Sbjct: 53 LVGHMKIHTG-IKPYECN--ICAKRFMWRDSFHRHVTSCTKSYEAAKAEQNTTEASGPS 108
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 57.1 bits (139), Expect = 1e-10
Identities = 24/105 (22%), Positives = 37/105 (35%), Gaps = 8/105 (7%)
Query: 284 LISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRL 341
+ + ++C C R F + L H TH + YTC +C F + L
Sbjct: 5 SSGGRLPSKTK-KEFICK--FCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHL 61
Query: 342 TQHLARLHTGSLSYPCTQCPGK-FYSAYELRQHVRQHTDERPFPC 385
H +H+ + C +C GK F + L H H
Sbjct: 62 RDHR-YIHSKEKPFKCQEC-GKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 54.7 bits (133), Expect = 8e-10
Identities = 26/86 (30%), Positives = 33/86 (38%), Gaps = 5/86 (5%)
Query: 182 SLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGK-FYSAYE 238
S + + + C CG FT L H R HT Y C C K F
Sbjct: 3 SGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHE-RTHTDERPYTCDIC-HKAFRRQDH 60
Query: 239 LRQHVRQHTDERPFPCPVCQRTFRRK 264
LR H H+ E+PF C C + F +
Sbjct: 61 LRDHRYIHSKEKPFKCQECGKGFCQS 86
Score = 54.7 bits (133), Expect = 8e-10
Identities = 26/86 (30%), Positives = 33/86 (38%), Gaps = 5/86 (5%)
Query: 313 SLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGK-FYSAYE 369
S + + + C CG FT L H R HT Y C C K F
Sbjct: 3 SGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHE-RTHTDERPYTCDIC-HKAFRRQDH 60
Query: 370 LRQHVRQHTDERPFPCPVCQRTFRRK 395
LR H H+ E+PF C C + F +
Sbjct: 61 LRDHRYIHSKEKPFKCQECGKGFCQS 86
Score = 53.2 bits (129), Expect = 3e-09
Identities = 33/150 (22%), Positives = 44/150 (29%), Gaps = 50/150 (33%)
Query: 210 LTQHLARLHTGSLSYPCTQCPGK-FYSAYELRQHVRQHTDERPFPCPVCQRTFRRKGLES 268
+ + C C G+ F +Y L H R HTDERP+ C +C + FRR+
Sbjct: 5 SSGGR-LPSKTKKEFICKFC-GRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQD--- 59
Query: 269 FTFSLRLFCLYFPQELISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTHAIQYTC 328
L H H E+ + C
Sbjct: 60 --------------HLRDHRYIHSKEK-----------------------------PFKC 76
Query: 329 HMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
CG F R L H LH + S
Sbjct: 77 QECGKGFCQSRTLAVH-KTLHMQTSSPTAA 105
Score = 40.1 bits (95), Expect = 1e-04
Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 6/77 (7%)
Query: 153 LISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRL 210
L+ H H E R Y C+ C + F L H H+ + + C CG F R L
Sbjct: 33 LLIHERTHTDE-RPYTCD--ICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTL 89
Query: 211 TQHLARLHTGSLSYPCT 227
H LH + S
Sbjct: 90 AVH-KTLHMQTSSPTAA 105
Score = 27.0 bits (61), Expect = 5.1
Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 20/68 (29%)
Query: 30 VHLRLHSGERRFPCEYCSLLVYPVLILFRFIFVCTQGSADSHKHHLKDHVNKIHLHPKTF 89
+H R H+ ER + C+ C A + HL+DH IH K F
Sbjct: 35 IHERTHTDERPYTCDIC-------------------HKAFRRQDHLRDH-RYIHSKEKPF 74
Query: 90 SCNSCGQT 97
C CG+
Sbjct: 75 KCQECGKG 82
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 56.5 bits (137), Expect = 2e-10
Identities = 29/84 (34%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 186 RHVSTHAIQYTCHM--CGHMFTCKRRLTQHLARLHTGSLSYPCT--QCPGKFYSAYELRQ 241
+ C C ++T L HL R HTG Y CT C +F + EL +
Sbjct: 7 GPDLEKRRIHYCDYPGCTKVYTKSSHLKAHL-RTHTGEKPYKCTWEGCDWRFARSDELTR 65
Query: 242 HVRQHTDERPFPCPVCQRTFRRKG 265
H R+HT +PF C VC R+F R
Sbjct: 66 HYRKHTGAKPFQCGVCNRSFSRSD 89
Score = 56.1 bits (136), Expect = 3e-10
Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 317 RHVSTHAIQYTCHM--CGHMFTCKRRLTQHLARLHTGSLSYPCT--QCPGKFYSAYELRQ 372
+ C C ++T L HL R HTG Y CT C +F + EL +
Sbjct: 7 GPDLEKRRIHYCDYPGCTKVYTKSSHLKAHL-RTHTGEKPYKCTWEGCDWRFARSDELTR 65
Query: 373 HVRQHTDERPFPCPVCQRTFRR 394
H R+HT +PF C VC R+F R
Sbjct: 66 HYRKHTGAKPFQCGVCNRSFSR 87
Score = 48.4 bits (116), Expect = 1e-07
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 286 SHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHM--CGHMFTCKRRL 341
S + R + C++ CT+ + +S L H+ TH + Y C C F L
Sbjct: 4 GSSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDEL 63
Query: 342 TQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTD 379
T+H R HTG+ + C C F + L H+++H +
Sbjct: 64 TRHY-RKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 43.8 bits (104), Expect = 6e-06
Identities = 27/122 (22%), Positives = 40/122 (32%), Gaps = 25/122 (20%)
Query: 231 GKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSY 290
G S+ + R H P C + + + L +H
Sbjct: 1 GSSGSSGPDLEKRRIHY----CDYPGCTKVYTKSS-----------------HLKAHLRT 39
Query: 291 HGGEERRYVCNHMQCTRRFHSASLLARHVSTH--AIQYTCHMCGHMFTCKRRLTQHLARL 348
H GE + Y C C RF + L RH H A + C +C F+ L H+ +
Sbjct: 40 HTGE-KPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHM-KR 97
Query: 349 HT 350
H
Sbjct: 98 HQ 99
Score = 40.7 bits (96), Expect = 8e-05
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 153 LISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTH--AIQYTCHMCGHMFTCKRRL 210
L +H H GE + Y C C RF + L RH H A + C +C F+ L
Sbjct: 33 LKAHLRTHTGE-KPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHL 91
Query: 211 TQHLARLHT 219
H+ + H
Sbjct: 92 ALHM-KRHQ 99
Score = 28.4 bits (64), Expect = 1.6
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 29 QVHLRLHSGERRFPCEYCS 47
H R H+G + F C C+
Sbjct: 64 TRHYRKHTGAKPFQCGVCN 82
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 56.0 bits (136), Expect = 3e-10
Identities = 32/135 (23%), Positives = 45/135 (33%), Gaps = 46/135 (34%)
Query: 218 HTGSLSYPCTQCPGK-FYSAYELRQHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLF 276
+GS C C GK F Y L +H H+ E+P+ CPVC F+RK
Sbjct: 2 SSGSSGVACEIC-GKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKD----------- 49
Query: 277 CLYFPQELISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTHAIQYTCHMCGHMFT 336
+ H H G + Y C CG F+
Sbjct: 50 ------RMSYHVRSHDGSVGK---------------------------PYICQSCGKGFS 76
Query: 337 CKRRLTQHLARLHTG 351
L H+ ++H+G
Sbjct: 77 RPDHLNGHIKQVHSG 91
Score = 53.3 bits (129), Expect = 2e-09
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDE--RPF 252
C +CG +F L +H H+G Y C C +F + HVR H +P+
Sbjct: 8 VACEICGKIFRDVYHLNRHK-LSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPY 66
Query: 253 PCPVCQRTFRRK 264
C C + F R
Sbjct: 67 ICQSCGKGFSRP 78
Score = 53.3 bits (129), Expect = 2e-09
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDE--RPF 383
C +CG +F L +H H+G Y C C +F + HVR H +P+
Sbjct: 8 VACEICGKIFRDVYHLNRHK-LSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPY 66
Query: 384 PCPVCQRTFRRK 395
C C + F R
Sbjct: 67 ICQSCGKGFSRP 78
Score = 48.3 bits (116), Expect = 1e-07
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 10/93 (10%)
Query: 164 ERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGS 221
C C + F L RH +H+ + Y+C +CG F K R++ H+ R H GS
Sbjct: 5 SSGVACE--ICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHV-RSHDGS 61
Query: 222 LS--YPCTQCPGK-FYSAYELRQHVRQ-HTDER 250
+ Y C C GK F L H++Q H+
Sbjct: 62 VGKPYICQSC-GKGFSRPDHLNGHIKQVHSGPS 93
Score = 44.8 bits (107), Expect = 2e-06
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 349 HTGSLSYPCTQCPGK-FYSAYELRQHVRQHTDERPFPCPVCQRTFRRK 395
+GS C C GK F Y L +H H+ E+P+ CPVC F+RK
Sbjct: 2 SSGSSGVACEIC-GKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRK 48
Score = 44.0 bits (105), Expect = 4e-06
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 153 LISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTH----AIQYTCHMCGHMFTCKR 208
L H H GE + Y C C RF ++ HV +H Y C CG F+
Sbjct: 23 LNRHKLSHSGE-KPYSCP--VCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPD 79
Query: 209 RLTQHLARLHTG 220
L H+ ++H+G
Sbjct: 80 HLNGHIKQVHSG 91
Score = 27.5 bits (62), Expect = 2.7
Identities = 17/69 (24%), Positives = 22/69 (31%), Gaps = 22/69 (31%)
Query: 29 QVHLRLHSGERRFPCEYCSLLVYPVLILFRFIFVCTQGSADSHKHHLKDHVNKIHL--HP 86
H HSGE+ + C C G K + HV + H
Sbjct: 24 NRHKLSHSGEKPYSCPVC-------------------GLRFKRKDRMSYHV-RSHDGSVG 63
Query: 87 KTFSCNSCG 95
K + C SCG
Sbjct: 64 KPYICQSCG 72
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 55.1 bits (134), Expect = 3e-10
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGK-FYSAYELRQHVRQHTDERPFP 253
+ C +CG F L+ HL +H+ + YPC C GK F+ ++++H HT E+P
Sbjct: 2 FDCKICGKSFKRSSTLSTHL-LIHSDTRPYPCQYC-GKRFHQKSDMKKHTFIHTGEKPHK 59
Query: 254 CPVCQRTFRRK 264
C VC + F +
Sbjct: 60 CQVCGKAFSQS 70
Score = 55.1 bits (134), Expect = 3e-10
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGK-FYSAYELRQHVRQHTDERPFP 384
+ C +CG F L+ HL +H+ + YPC C GK F+ ++++H HT E+P
Sbjct: 2 FDCKICGKSFKRSSTLSTHL-LIHSDTRPYPCQYC-GKRFHQKSDMKKHTFIHTGEKPHK 59
Query: 385 CPVCQRTFRRK 395
C VC + F +
Sbjct: 60 CQVCGKAFSQS 70
Score = 45.5 bits (109), Expect = 1e-06
Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 22/101 (21%)
Query: 223 SYPCTQCPGK-FYSAYELRQHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFP 281
S+ C C GK F + L H+ H+D RP+PC C + F +K
Sbjct: 1 SFDCKIC-GKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKS---------------- 43
Query: 282 QELISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTH 322
++ H+ H G E+ + C C + F +S L H H
Sbjct: 44 -DMKKHTFIHTG-EKPHKCQ--VCGKAFSQSSNLITHSRKH 80
Score = 39.3 bits (93), Expect = 1e-04
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 354 SYPCTQCPGK-FYSAYELRQHVRQHTDERPFPCPVCQRTFRRK 395
S+ C C GK F + L H+ H+D RP+PC C + F +K
Sbjct: 1 SFDCKIC-GKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQK 42
Score = 38.9 bits (92), Expect = 2e-04
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 153 LISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRL 210
L +H H R Y C C +RFH S + +H H + + C +CG F+ L
Sbjct: 17 LSTHLLIHSDT-RPYPCQ--YCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNL 73
Query: 211 TQHLARLHTG 220
H R HTG
Sbjct: 74 ITHS-RKHTG 82
Score = 28.9 bits (66), Expect = 0.70
Identities = 19/68 (27%), Positives = 24/68 (35%), Gaps = 20/68 (29%)
Query: 30 VHLRLHSGERRFPCEYCSLLVYPVLILFRFIFVCTQGSADSHKHHLKDHVNKIHLHPKTF 89
HL +HS R +PC+YC G K +K H IH K
Sbjct: 19 THLLIHSDTRPYPCQYC-------------------GKRFHQKSDMKKH-TFIHTGEKPH 58
Query: 90 SCNSCGQT 97
C CG+
Sbjct: 59 KCQVCGKA 66
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 55.2 bits (134), Expect = 4e-10
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
+ C +C F+ LT H+ R HTG + C C KF + E ++H P
Sbjct: 4 FQCRICMRNFSRSDHLTTHI-RTHTGEKPFACDICGRKFARSDERKRHRDIQH-ILPILE 61
Query: 255 PVCQRTFRRKG 265
+ +
Sbjct: 62 DKVEELLSKNY 72
Score = 54.8 bits (133), Expect = 6e-10
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
+ C +C F+ LT H+ R HTG + C C KF + E ++H P
Sbjct: 4 FQCRICMRNFSRSDHLTTHI-RTHTGEKPFACDICGRKFARSDERKRHRDIQH-ILPILE 61
Query: 386 PVCQRTFRRK 395
+ +
Sbjct: 62 DKVEELLSKN 71
Score = 42.5 bits (101), Expect = 1e-05
Identities = 20/97 (20%), Positives = 29/97 (29%), Gaps = 21/97 (21%)
Query: 224 YPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQE 283
+ C C F + L H+R HT E+PF C +C R F R E
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSD-----------------E 46
Query: 284 LISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVS 320
H + + + L V+
Sbjct: 47 RKRHRDIQH--ILPILED--KVEELLSKNYHLENEVA 79
Score = 42.1 bits (100), Expect = 2e-05
Identities = 22/105 (20%), Positives = 34/105 (32%), Gaps = 23/105 (21%)
Query: 250 RPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVCNHMQCTRRF 309
+PF C +C R F R L +H H GE + + C+ C R+F
Sbjct: 2 KPFQCRICMRNFSRSD-----------------HLTTHIRTHTGE-KPFACD--ICGRKF 41
Query: 310 HSASLLARHVSTHAIQ-YTCHMCGHMFTCKRRLTQHLA--RLHTG 351
+ RH I + + L +A + G
Sbjct: 42 ARSDERKRHRDIQHILPILEDKVEELLSKNYHLENEVARLKKLVG 86
Score = 37.5 bits (88), Expect = 7e-04
Identities = 19/89 (21%), Positives = 30/89 (33%), Gaps = 9/89 (10%)
Query: 298 YVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSY 355
+ C C R F + L H+ TH + + C +CG F +H + L
Sbjct: 4 FQCR--ICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHR-DIQHI-LPI 59
Query: 356 PCTQCPGKFYSAYELRQHV---RQHTDER 381
+ Y L V ++ ER
Sbjct: 60 LEDKVEELLSKNYHLENEVARLKKLVGER 88
Score = 36.7 bits (86), Expect = 0.001
Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 6/71 (8%)
Query: 153 LISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTHAIQ-YTCHMCGHMFTCKRRLT 211
L +H H GE + + C+ C R+F + RH I + + L
Sbjct: 19 LTTHIRTHTGE-KPFACD--ICGRKFARSDERKRHRDIQHILPILEDKVEELLSKNYHLE 75
Query: 212 QHLA--RLHTG 220
+A + G
Sbjct: 76 NEVARLKKLVG 86
Score = 25.9 bits (58), Expect = 7.5
Identities = 13/69 (18%), Positives = 20/69 (28%), Gaps = 21/69 (30%)
Query: 29 QVHLRLHSGERRFPCEYCSLLVYPVLILFRFIFVCTQGSADSHKHHLKDHVNKIHLHPKT 88
H+R H+GE+ F C+ C G + K H I H
Sbjct: 20 TTHIRTHTGEKPFACDIC-------------------GRKFARSDERKRHR-DIQ-HILP 58
Query: 89 FSCNSCGQT 97
+ +
Sbjct: 59 ILEDKVEEL 67
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 53.7 bits (130), Expect = 9e-10
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 195 YTCHM--CGHMFTCKRRLTQHLARLHTGSLSYPCTQCP-GK-FYSAYELRQHVRQHTDER 250
C CG +F+ ++ L H H S+ C + GK F L++H++ H+D R
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTR 67
Query: 251 PFPCPVCQRTF 261
+ C +
Sbjct: 68 DYICEFSGPSS 78
Score = 53.7 bits (130), Expect = 9e-10
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 326 YTCHM--CGHMFTCKRRLTQHLARLHTGSLSYPCTQCP-GK-FYSAYELRQHVRQHTDER 381
C CG +F+ ++ L H H S+ C + GK F L++H++ H+D R
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTR 67
Query: 382 PFPCPVCQRTF 392
+ C +
Sbjct: 68 DYICEFSGPSS 78
Score = 40.2 bits (95), Expect = 6e-05
Identities = 18/95 (18%), Positives = 27/95 (28%), Gaps = 23/95 (24%)
Query: 246 HTDERPFPCPV--CQRTFRRKGLESFTFSLRLFCLYFPQELISHS-SYHGGEERRYVCNH 302
+ PC C R F + Q L H H + + + C
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNR-----------------QYLNHHKKYQHIHQ-KSFSCPE 43
Query: 303 MQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHMF 335
C + F+ L H+ H+ Y C G
Sbjct: 44 PACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78
Score = 32.1 bits (74), Expect = 0.037
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 164 ERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHMF 204
++ + C C + F+ L H+ H+ Y C G
Sbjct: 36 QKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78
Score = 25.6 bits (57), Expect = 7.9
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 29 QVHLRLHSGERRFPCEYC 46
+ H++LHS R + CE+
Sbjct: 57 KEHMKLHSDTRDYICEFS 74
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 51.0 bits (123), Expect = 1e-08
Identities = 11/71 (15%), Positives = 20/71 (28%), Gaps = 5/71 (7%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLS----YPCTQCPGKFYSAYELRQHVRQHTDER 250
Y C C F K+ L H + + + C++C F + +H
Sbjct: 16 YACSHCDKTFRQKQLLDMHF-KRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPD 74
Query: 251 PFPCPVCQRTF 261
+
Sbjct: 75 GVEGENSGPSS 85
Score = 51.0 bits (123), Expect = 1e-08
Identities = 11/71 (15%), Positives = 20/71 (28%), Gaps = 5/71 (7%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLS----YPCTQCPGKFYSAYELRQHVRQHTDER 381
Y C C F K+ L H + + + C++C F + +H
Sbjct: 16 YACSHCDKTFRQKQLLDMHF-KRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPD 74
Query: 382 PFPCPVCQRTF 392
+
Sbjct: 75 GVEGENSGPSS 85
Score = 47.1 bits (113), Expect = 3e-07
Identities = 23/102 (22%), Positives = 34/102 (33%), Gaps = 24/102 (23%)
Query: 239 LRQHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERR- 297
R HT E+P+ C C +TFR+K L L H +
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQL-----------------LDMHFKRYHDPNFVP 45
Query: 298 --YVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHMF 335
+VC+ +C + F + +ARH A G
Sbjct: 46 AAFVCS--KCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS 85
Score = 41.0 bits (97), Expect = 4e-05
Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 341 LTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDE----RPFPCPVCQRTFRRK 395
R HTG Y C+ C F L H +++ D F C C +TF R+
Sbjct: 3 SGSSG-RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRR 60
Score = 29.8 bits (68), Expect = 0.32
Identities = 11/57 (19%), Positives = 18/57 (31%), Gaps = 7/57 (12%)
Query: 153 LISHSSYHGGEERR---YVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHMF 204
L H + +VC+ +C + F + +ARH A G
Sbjct: 31 LDMHFKRYHDPNFVPAAFVCS--KCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS 85
Score = 27.1 bits (61), Expect = 2.6
Identities = 16/73 (21%), Positives = 23/73 (31%), Gaps = 24/73 (32%)
Query: 29 QVHLRLHSGERRFPCEYCSLLVYPVLILFRFIFVCTQGSADSHKHHLKDHVNKIH----L 84
R H+GE+ + C +C K L H K +
Sbjct: 4 GSSGRTHTGEKPYACSHC-------------------DKTFRQKQLLDMH-FKRYHDPNF 43
Query: 85 HPKTFSCNSCGQT 97
P F C+ CG+T
Sbjct: 44 VPAAFVCSKCGKT 56
Score = 26.3 bits (59), Expect = 6.0
Identities = 8/70 (11%), Positives = 20/70 (28%), Gaps = 18/70 (25%)
Query: 29 QVHLRLHSGERRFPCEYCSLLVYPVLILFRFIFVCTQ-GSADSHKHHLKDHVNKIHLHPK 87
+H + + P + VC++ G + ++ + H P
Sbjct: 32 DMHFKRYHDPNFVPAAF----------------VCSKCGKTFTRRNTMARH-ADNCAGPD 74
Query: 88 TFSCNSCGQT 97
+ G +
Sbjct: 75 GVEGENSGPS 84
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 49.2 bits (117), Expect = 7e-08
Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 8/77 (10%)
Query: 186 RHVSTHAIQYTCHMCGHMFTCKRRLTQHLARLHTGSLSYP--------CTQCPGKFYSAY 237
+ + + C F+ L H+ H G C + F + Y
Sbjct: 17 KWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKY 76
Query: 238 ELRQHVRQHTDERPFPC 254
+L H+R HT E+ P
Sbjct: 77 KLVNHIRVHTGEKSGPS 93
Score = 49.2 bits (117), Expect = 7e-08
Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 8/77 (10%)
Query: 317 RHVSTHAIQYTCHMCGHMFTCKRRLTQHLARLHTGSLSYP--------CTQCPGKFYSAY 368
+ + + C F+ L H+ H G C + F + Y
Sbjct: 17 KWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKY 76
Query: 369 ELRQHVRQHTDERPFPC 385
+L H+R HT E+ P
Sbjct: 77 KLVNHIRVHTGEKSGPS 93
Score = 28.4 bits (63), Expect = 1.3
Identities = 19/83 (22%), Positives = 28/83 (33%), Gaps = 23/83 (27%)
Query: 246 HTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISH-SSYH--GGEERRYVCNH 302
+ P C RTF EL++H + H G E+ +VC
Sbjct: 20 DEAQLSRPKKSCDRTFST-----------------MHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 303 MQCTRR---FHSASLLARHVSTH 322
+C R F + L H+ H
Sbjct: 63 EECPREGKSFKAKYKLVNHIRVH 85
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 47.5 bits (114), Expect = 2e-07
Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPF 252
Y C CG F+ L QH R+HTG Y C +C F L H R HT
Sbjct: 15 YGCVECGKAFSRSSILVQH-QRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71
Score = 47.5 bits (114), Expect = 2e-07
Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPF 383
Y C CG F+ L QH R+HTG Y C +C F L H R HT
Sbjct: 15 YGCVECGKAFSRSSILVQH-QRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71
Score = 44.8 bits (107), Expect = 1e-06
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 341 LTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRK 395
+ + +H+G Y C +C F + L QH R HT E+P+ C C + F +
Sbjct: 2 SSGS-SGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQN 55
Score = 37.1 bits (87), Expect = 6e-04
Identities = 20/84 (23%), Positives = 28/84 (33%), Gaps = 20/84 (23%)
Query: 239 LRQHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRY 298
H+ E+P+ C C + F R L+ H H G E+ Y
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSS-----------------ILVQHQRVHTG-EKPY 43
Query: 299 VCNHMQCTRRFHSASLLARHVSTH 322
C +C + F S L H H
Sbjct: 44 KCL--ECGKAFSQNSGLINHQRIH 65
Score = 25.9 bits (58), Expect = 5.3
Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 20/67 (29%)
Query: 31 HLRLHSGERRFPCEYCSLLVYPVLILFRFIFVCTQGSADSHKHHLKDHVNKIHLHPKTFS 90
+HSGE+ + C C G A S L H ++H K +
Sbjct: 5 SSGIHSGEKPYGCVEC-------------------GKAFSRSSILVQH-QRVHTGEKPYK 44
Query: 91 CNSCGQT 97
C CG+
Sbjct: 45 CLECGKA 51
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 47.1 bits (113), Expect = 2e-07
Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 210 LTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDE--RPFPCPVCQRTFRRKG 265
R H+G Y C C +F + ++ H+ Q E F CP C RK
Sbjct: 3 SGSSG-RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKS 59
Score = 46.4 bits (111), Expect = 4e-07
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 341 LTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDE--RPFPCPVCQRTFRRK 395
R H+G Y C C +F + ++ H+ Q E F CP C RK
Sbjct: 3 SGSSG-RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARK 58
Score = 43.7 bits (104), Expect = 3e-06
Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 6/74 (8%)
Query: 184 LARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLS--YPCTQCPGKFYSAYEL 239
TH+ + Y C++C FT + H+ + C C +L
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHI-LQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 240 RQHVR-QHTDERPF 252
H+R QH+ P
Sbjct: 62 GVHLRKQHSYSGPS 75
Score = 43.7 bits (104), Expect = 3e-06
Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 6/74 (8%)
Query: 315 LARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLS--YPCTQCPGKFYSAYEL 370
TH+ + Y C++C FT + H+ + C C +L
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHI-LQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 371 RQHVR-QHTDERPF 383
H+R QH+ P
Sbjct: 62 GVHLRKQHSYSGPS 75
Score = 41.0 bits (97), Expect = 3e-05
Identities = 16/85 (18%), Positives = 24/85 (28%), Gaps = 20/85 (23%)
Query: 239 LRQHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERR- 297
R H+ E+P+ C +C F + G + H E
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSG-----------------TMKMHILQKHTENVAK 45
Query: 298 YVCNHMQCTRRFHSASLLARHVSTH 322
+ C H C S L H+
Sbjct: 46 FHCPH--CDTVIARKSDLGVHLRKQ 68
Score = 39.0 bits (92), Expect = 1e-04
Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 7/72 (9%)
Query: 153 LISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTH----AIQYTCHMCGHMFTCKR 208
S H GE + Y C C RF + + H+ ++ C C + K
Sbjct: 3 SGSSGRTHSGE-KPYECY--ICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKS 59
Query: 209 RLTQHLARLHTG 220
L HL + H+
Sbjct: 60 DLGVHLRKQHSY 71
Score = 28.6 bits (65), Expect = 0.72
Identities = 12/71 (16%), Positives = 19/71 (26%), Gaps = 22/71 (30%)
Query: 29 QVHLRLHSGERRFPCEYCSLLVYPVLILFRFIFVCTQGSADSHKHHLKDHVNKIHL--HP 86
R HSGE+ + C C + + +K H+ +
Sbjct: 4 GSSGRTHSGEKPYECYIC-------------------HARFTQSGTMKMHI-LQKHTENV 43
Query: 87 KTFSCNSCGQT 97
F C C
Sbjct: 44 AKFHCPHCDTV 54
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 46.8 bits (112), Expect = 3e-07
Identities = 19/73 (26%), Positives = 25/73 (34%), Gaps = 5/73 (6%)
Query: 195 YTCHM--CGHMFTCKRRLTQHLARLHTGSLSYPCTQ--CPGKFYSAYELRQHVRQHTDER 250
Y CH CG F +L H HT L Y C C +F L++H + H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQ-FSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 60
Query: 251 PFPCPVCQRTFRR 263
C +
Sbjct: 61 CKKDDSCSFVGKT 73
Score = 46.8 bits (112), Expect = 3e-07
Identities = 19/73 (26%), Positives = 25/73 (34%), Gaps = 5/73 (6%)
Query: 326 YTCHM--CGHMFTCKRRLTQHLARLHTGSLSYPCTQ--CPGKFYSAYELRQHVRQHTDER 381
Y CH CG F +L H HT L Y C C +F L++H + H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQ-FSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 60
Query: 382 PFPCPVCQRTFRR 394
C +
Sbjct: 61 CKKDDSCSFVGKT 73
Score = 40.7 bits (96), Expect = 4e-05
Identities = 18/68 (26%), Positives = 23/68 (33%), Gaps = 3/68 (4%)
Query: 153 LISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTH--AIQYTCHMCGHMFTCKRRL 210
L H H + Y C H C +RF S L RH H C +
Sbjct: 19 LKVHQFSHTQQ-LPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLY 77
Query: 211 TQHLARLH 218
+H+A H
Sbjct: 78 LKHVAECH 85
Score = 40.7 bits (96), Expect = 4e-05
Identities = 18/68 (26%), Positives = 23/68 (33%), Gaps = 3/68 (4%)
Query: 284 LISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTH--AIQYTCHMCGHMFTCKRRL 341
L H H + Y C H C +RF S L RH H C +
Sbjct: 19 LKVHQFSHTQQ-LPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLY 77
Query: 342 TQHLARLH 349
+H+A H
Sbjct: 78 LKHVAECH 85
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 46.3 bits (111), Expect = 3e-07
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
C C + + K L H R+H + C C L +H+++ + P
Sbjct: 10 EKCSECSYSCSSKAALRIHE-RIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68
Query: 255 P 255
Sbjct: 69 S 69
Score = 46.3 bits (111), Expect = 3e-07
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
C C + + K L H R+H + C C L +H+++ + P
Sbjct: 10 EKCSECSYSCSSKAALRIHE-RIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68
Query: 386 P 386
Sbjct: 69 S 69
Score = 42.1 bits (100), Expect = 1e-05
Identities = 13/50 (26%), Positives = 19/50 (38%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRKG 265
+ C++C S LR H R H +RPF C C ++
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPS 51
Score = 42.1 bits (100), Expect = 1e-05
Identities = 13/49 (26%), Positives = 19/49 (38%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRK 395
+ C++C S LR H R H +RPF C C ++
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQP 50
Score = 39.8 bits (94), Expect = 6e-05
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 164 ERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGS 221
C+ +C+ S + L H H + C+ C L++H+ + G
Sbjct: 7 GHPEKCS--ECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHM-KKFHGD 63
Query: 222 LSYPCT 227
+S P +
Sbjct: 64 MSGPSS 69
Score = 39.8 bits (94), Expect = 6e-05
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 295 ERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGS 352
C+ +C+ S + L H H + C+ C L++H+ + G
Sbjct: 7 GHPEKCS--ECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHM-KKFHGD 63
Query: 353 LSYPCT 358
+S P +
Sbjct: 64 MSGPSS 69
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 45.9 bits (110), Expect = 6e-07
Identities = 24/74 (32%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Query: 182 SLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGK-FYSAYE 238
R + Y C CG F+ L++H R HTG Y C +C GK F
Sbjct: 4 GSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKH-RRTHTGEKPYKCDEC-GKAFIQRSH 61
Query: 239 LRQHVRQHTDERPF 252
L H R HT P
Sbjct: 62 LIGHHRVHTGSGPS 75
Score = 45.9 bits (110), Expect = 6e-07
Identities = 24/74 (32%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Query: 313 SLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGK-FYSAYE 369
R + Y C CG F+ L++H R HTG Y C +C GK F
Sbjct: 4 GSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKH-RRTHTGEKPYKCDEC-GKAFIQRSH 61
Query: 370 LRQHVRQHTDERPF 383
L H R HT P
Sbjct: 62 LIGHHRVHTGSGPS 75
Score = 42.0 bits (100), Expect = 1e-05
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 341 LTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRK 395
+ Y C +C F + +L +H R HT E+P+ C C + F ++
Sbjct: 6 SGRS-EWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQR 59
Score = 36.7 bits (86), Expect = 0.001
Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 20/84 (23%)
Query: 239 LRQHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRY 298
+ Q + R + C C ++F +L H H G E+ Y
Sbjct: 6 SGRSEWQQRERRRYKCDECGKSFSHSS-----------------DLSKHRRTHTG-EKPY 47
Query: 299 VCNHMQCTRRFHSASLLARHVSTH 322
C+ +C + F S L H H
Sbjct: 48 KCD--ECGKAFIQRSHLIGHHRVH 69
Score = 27.4 bits (62), Expect = 2.0
Identities = 14/67 (20%), Positives = 21/67 (31%), Gaps = 20/67 (29%)
Query: 31 HLRLHSGERRFPCEYCSLLVYPVLILFRFIFVCTQGSADSHKHHLKDHVNKIHLHPKTFS 90
RR+ C+ C G + SH L H + H K +
Sbjct: 9 SEWQQRERRRYKCDEC-------------------GKSFSHSSDLSKH-RRTHTGEKPYK 48
Query: 91 CNSCGQT 97
C+ CG+
Sbjct: 49 CDECGKA 55
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 44.9 bits (107), Expect = 1e-06
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVR--QHTDERPFPCPVCQRTFRRKG 265
G +Y C C + +H + + +PCP C + F RK
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKD 54
Score = 44.5 bits (106), Expect = 1e-06
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVR--QHTDERPFPCPVCQRTFRRK 395
G +Y C C + +H + + +PCP C + F RK
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRK 53
Score = 38.7 bits (91), Expect = 2e-04
Identities = 13/80 (16%), Positives = 19/80 (23%), Gaps = 20/80 (25%)
Query: 244 RQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHS-SYHGGEERRYVCNH 302
E + C VC R + H + H + Y C
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHIS-----------------NFCRHYVTSHKRNVKVYPCP- 44
Query: 303 MQCTRRFHSASLLARHVSTH 322
C + F + HV
Sbjct: 45 -FCFKEFTRKDNMTAHVKII 63
Score = 37.1 bits (87), Expect = 5e-04
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 195 YTCHMCGHMFTCKRRLTQHL-ARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHT 247
Y C +C ++T +H YPC C +F + HV+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 37.1 bits (87), Expect = 5e-04
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 326 YTCHMCGHMFTCKRRLTQHL-ARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHT 378
Y C +C ++T +H YPC C +F + HV+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 44.0 bits (105), Expect = 2e-06
Identities = 21/73 (28%), Positives = 27/73 (36%), Gaps = 3/73 (4%)
Query: 182 SLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAYEL 239
H Y C C F K L H +HTG Y C C +F L
Sbjct: 3 HHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANL 61
Query: 240 RQHVRQHTDERPF 252
+ H R H+ E+P+
Sbjct: 62 KTHTRIHSGEKPY 74
Score = 44.0 bits (105), Expect = 2e-06
Identities = 21/73 (28%), Positives = 27/73 (36%), Gaps = 3/73 (4%)
Query: 313 SLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAYEL 370
H Y C C F K L H +HTG Y C C +F L
Sbjct: 3 HHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANL 61
Query: 371 RQHVRQHTDERPF 383
+ H R H+ E+P+
Sbjct: 62 KTHTRIHSGEKPY 74
Score = 42.4 bits (101), Expect = 8e-06
Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 210 LTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRKG 265
H + + Y C +C F L H HT E+P+ C +C F R
Sbjct: 5 HHHH-SHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPA 59
Score = 42.4 bits (101), Expect = 9e-06
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 341 LTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRK 395
H + + Y C +C F L H HT E+P+ C +C F R
Sbjct: 5 HHHH-SHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRP 58
Score = 37.8 bits (89), Expect = 4e-04
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 153 LISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRL 210
HS + + Y C+ +C F LA H + H + Y C++CG F L
Sbjct: 5 HHHHSHMTHSD-KPYKCD--RCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANL 61
Query: 211 TQHLARLHTG 220
H R+H+G
Sbjct: 62 KTHT-RIHSG 70
Score = 37.8 bits (89), Expect = 4e-04
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 284 LISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRL 341
HS + + Y C+ +C F LA H + H + Y C++CG F L
Sbjct: 5 HHHHSHMTHSD-KPYKCD--RCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANL 61
Query: 342 TQHLARLHTG 351
H R+H+G
Sbjct: 62 KTHT-RIHSG 70
Score = 37.0 bits (87), Expect = 8e-04
Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 20/84 (23%)
Query: 239 LRQHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRY 298
H ++P+ C CQ +FR KG L SH + H G E+ Y
Sbjct: 5 HHHHSHMTHSDKPYKCDRCQASFRYKG-----------------NLASHKTVHTG-EKPY 46
Query: 299 VCNHMQCTRRFHSASLLARHVSTH 322
CN C +F+ + L H H
Sbjct: 47 RCN--ICGAQFNRPANLKTHTRIH 68
Score = 26.6 bits (60), Expect = 3.6
Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 20/69 (28%)
Query: 29 QVHLRLHSGERRFPCEYCSLLVYPVLILFRFIFVCTQGSADSHKHHLKDHVNKIHLHPKT 88
H + ++ + C+ C ++ +K +L H +H K
Sbjct: 6 HHHSHMTHSDKPYKCDRC-------------------QASFRYKGNLASH-KTVHTGEKP 45
Query: 89 FSCNSCGQT 97
+ CN CG
Sbjct: 46 YRCNICGAQ 54
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 43.4 bits (103), Expect = 4e-06
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 215 ARLHTGSLSYPCT--QCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRR 263
+ Y C C +F + EL +H+R HT ++PF C +C R F R
Sbjct: 11 NYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSR 61
Score = 43.4 bits (103), Expect = 4e-06
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 346 ARLHTGSLSYPCT--QCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRR 394
+ Y C C +F + EL +H+R HT ++PF C +C R F R
Sbjct: 11 NYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSR 61
Score = 38.1 bits (89), Expect = 3e-04
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 177 RFHSASLLARHVSTHAIQYTCHM--CGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFY 234
H + L +V Y C + C F+ LT+H+ R+HTG + C C F
Sbjct: 2 EPHPMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHI-RIHTGQKPFQCRICMRNFS 60
Query: 235 SAYELRQHVRQHT 247
+ L H+R HT
Sbjct: 61 RSDHLTTHIRTHT 73
Score = 38.1 bits (89), Expect = 3e-04
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 308 RFHSASLLARHVSTHAIQYTCHM--CGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFY 365
H + L +V Y C + C F+ LT+H+ R+HTG + C C F
Sbjct: 2 EPHPMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHI-RIHTGQKPFQCRICMRNFS 60
Query: 366 SAYELRQHVRQHT 378
+ L H+R HT
Sbjct: 61 RSDHLTTHIRTHT 73
Score = 37.7 bits (88), Expect = 4e-04
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 164 ERRYVCNHMQCTRRFHSASLLARHVSTH--AIQYTCHMCGHMFTCKRRLTQHLARLHT 219
R Y C C RRF + L RH+ H + C +C F+ LT H+ R HT
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI-RTHT 73
Score = 37.7 bits (88), Expect = 4e-04
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 295 ERRYVCNHMQCTRRFHSASLLARHVSTH--AIQYTCHMCGHMFTCKRRLTQHLARLHT 350
R Y C C RRF + L RH+ H + C +C F+ LT H+ R HT
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI-RTHT 73
Score = 28.4 bits (64), Expect = 0.79
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 31 HLRLHSGERRFPCEYCS 47
H+R+H+G++ F C C
Sbjct: 40 HIRIHTGQKPFQCRICM 56
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 43.5 bits (103), Expect = 5e-06
Identities = 14/66 (21%), Positives = 20/66 (30%), Gaps = 4/66 (6%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHT---GSLSYPCTQCPGKFYSAYELRQHVRQHTDERP 251
C +CG K L H R H +L +PC C +F + H +
Sbjct: 8 LQCEICGFTCRQKASLNWHQ-RKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALL 66
Query: 252 FPCPVC 257
Sbjct: 67 LAPQES 72
Score = 43.5 bits (103), Expect = 5e-06
Identities = 14/66 (21%), Positives = 20/66 (30%), Gaps = 4/66 (6%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHT---GSLSYPCTQCPGKFYSAYELRQHVRQHTDERP 382
C +CG K L H R H +L +PC C +F + H +
Sbjct: 8 LQCEICGFTCRQKASLNWHQ-RKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALL 66
Query: 383 FPCPVC 388
Sbjct: 67 LAPQES 72
Score = 42.4 bits (100), Expect = 1e-05
Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 349 HTGSLSYPCTQCPGKFYSAYELRQHVRQHTD---ERPFPCPVCQRTFRRK 395
+GS C C L H R+H + FPC C + F +
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKP 51
Score = 41.6 bits (98), Expect = 2e-05
Identities = 14/71 (19%), Positives = 19/71 (26%), Gaps = 7/71 (9%)
Query: 164 ERRYVCNHMQCTRRFHSASLLARHVSTHAIQ-----YTCHMCGHMFTCKRRLTQHLARLH 218
C C + L H HA + C CG F + H ++ H
Sbjct: 5 SSGLQCE--ICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
Query: 219 TGSLSYPCTQC 229
L P
Sbjct: 63 PALLLAPQESS 73
Score = 41.6 bits (98), Expect = 2e-05
Identities = 14/71 (19%), Positives = 19/71 (26%), Gaps = 7/71 (9%)
Query: 295 ERRYVCNHMQCTRRFHSASLLARHVSTHAIQ-----YTCHMCGHMFTCKRRLTQHLARLH 349
C C + L H HA + C CG F + H ++ H
Sbjct: 5 SSGLQCE--ICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
Query: 350 TGSLSYPCTQC 360
L P
Sbjct: 63 PALLLAPQESS 73
Score = 39.3 bits (92), Expect = 1e-04
Identities = 16/80 (20%), Positives = 22/80 (27%), Gaps = 21/80 (26%)
Query: 246 HTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGE--ERRYVCNHM 303
+ C +C T R+K L H H R+ C
Sbjct: 2 SSGSSGLQCEICGFTCRQKA-----------------SLNWHQRKHAETVAALRFPCE-- 42
Query: 304 QCTRRFHSASLLARHVSTHA 323
C +RF +A H S
Sbjct: 43 FCGKRFEKPDSVAAHRSKSH 62
Score = 28.9 bits (65), Expect = 0.53
Identities = 16/72 (22%), Positives = 21/72 (29%), Gaps = 22/72 (30%)
Query: 29 QVHLRLHS---GERRFPCEYCSLLVYPVLILFRFIFVCTQGSADSHKHHLKDHVNKIHLH 85
H R H+ RFPCE+C RF + H +K H
Sbjct: 24 NWHQRKHAETVAALRFPCEFCG---------KRF----------EKPDSVAAHRSKSHPA 64
Query: 86 PKTFSCNSCGQT 97
S G +
Sbjct: 65 LLLAPQESSGPS 76
Score = 26.2 bits (58), Expect = 6.1
Identities = 13/75 (17%), Positives = 18/75 (24%), Gaps = 22/75 (29%)
Query: 120 FPCKRCDERFSTRDGLESFTFSLRLFCLYFPQELISHSSYHGGE--ERRYVCNHMQCTRR 177
C+ C + L H H R+ C C +R
Sbjct: 8 LQCEICGFTCRQKASLN------------------WHQRKHAETVAALRFPCE--FCGKR 47
Query: 178 FHSASLLARHVSTHA 192
F +A H S
Sbjct: 48 FEKPDSVAAHRSKSH 62
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 40.9 bits (97), Expect = 2e-05
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 167 YVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTG 220
+VC CTR F L RH +H + Y C +C FT + L +H ++H+G
Sbjct: 3 FVCE--VCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 40.9 bits (97), Expect = 2e-05
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 298 YVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTG 351
+VC CTR F L RH +H + Y C +C FT + L +H ++H+G
Sbjct: 3 FVCE--VCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 39.8 bits (94), Expect = 6e-05
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 224 YPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRK 264
+ C C F L++H R HT+E+P+PC +C R F R+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRR 43
Score = 39.8 bits (94), Expect = 6e-05
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 355 YPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRK 395
+ C C F L++H R HT+E+P+PC +C R F R+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRR 43
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 40.9 bits (95), Expect = 2e-05
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 194 QYTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDER 250
+Y C CG L +H+ R HT Y CT C F + L +H++ +
Sbjct: 1 KYICEECGIRXKKPSMLKKHI-RTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 40.9 bits (95), Expect = 2e-05
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 325 QYTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDER 381
+Y C CG L +H+ R HT Y CT C F + L +H++ +
Sbjct: 1 KYICEECGIRXKKPSMLKKHI-RTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 34.7 bits (79), Expect = 0.004
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 224 YPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRKG 265
Y C +C + L++H+R HTD RP+ C C +F+ KG
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKG 43
Score = 33.9 bits (77), Expect = 0.007
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 355 YPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRK 395
Y C +C + L++H+R HTD RP+ C C +F+ K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTK 42
Score = 33.5 bits (76), Expect = 0.008
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 166 RYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTG 220
+Y+C +C R S+L +H+ TH Y C C F K LT+H+ +
Sbjct: 1 KYICE--ECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM-KSKAH 54
Score = 33.5 bits (76), Expect = 0.008
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 297 RYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTG 351
+Y+C +C R S+L +H+ TH Y C C F K LT+H+ +
Sbjct: 1 KYICE--ECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM-KSKAH 54
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 41.8 bits (97), Expect = 5e-05
Identities = 22/105 (20%), Positives = 34/105 (32%), Gaps = 7/105 (6%)
Query: 165 RRYVCNHMQCTRRFHSASLLARHVSTHAIQYTCHMCGHMFTCKRRLTQHLARL-----HT 219
++Y+ NH L H T + +L + L
Sbjct: 11 KKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASK 70
Query: 220 GSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRK 264
+ C C F S+ L+QH+R E CPVC++ F
Sbjct: 71 AISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTST 113
Score = 41.8 bits (97), Expect = 5e-05
Identities = 22/105 (20%), Positives = 34/105 (32%), Gaps = 7/105 (6%)
Query: 296 RRYVCNHMQCTRRFHSASLLARHVSTHAIQYTCHMCGHMFTCKRRLTQHLARL-----HT 350
++Y+ NH L H T + +L + L
Sbjct: 11 KKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASK 70
Query: 351 GSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRK 395
+ C C F S+ L+QH+R E CPVC++ F
Sbjct: 71 AISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTST 113
Score = 38.8 bits (89), Expect = 6e-04
Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 4/77 (5%)
Query: 147 LYFPQELISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTHAIQYTCHMCGHMFTC 206
L L + ++VC C F S+ L +H+ C +C FT
Sbjct: 57 LDESSYLYRLLASKAI--SQFVCPL--CLMPFSSSVSLKQHIRYTEHTKVCPVCKKEFTS 112
Query: 207 KRRLTQHLARLHTGSLS 223
H+ + H +S
Sbjct: 113 TDSALDHVCKKHNICVS 129
Score = 38.8 bits (89), Expect = 6e-04
Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 4/77 (5%)
Query: 278 LYFPQELISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTHAIQYTCHMCGHMFTC 337
L L + ++VC C F S+ L +H+ C +C FT
Sbjct: 57 LDESSYLYRLLASKAI--SQFVCPL--CLMPFSSSVSLKQHIRYTEHTKVCPVCKKEFTS 112
Query: 338 KRRLTQHLARLHTGSLS 354
H+ + H +S
Sbjct: 113 TDSALDHVCKKHNICVS 129
Score = 31.8 bits (71), Expect = 0.14
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 179 HSASLLARHVSTHAIQ-YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAY 237
+S L R +++ AI + C +C F+ L QH+ R + C C +F S
Sbjct: 58 DESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHI-RYTEHT--KVCPVCKKEFTSTD 114
Query: 238 ELRQHVRQH 246
HV +
Sbjct: 115 SALDHVCKK 123
Score = 31.8 bits (71), Expect = 0.14
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 310 HSASLLARHVSTHAIQ-YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAY 368
+S L R +++ AI + C +C F+ L QH+ R + C C +F S
Sbjct: 58 DESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHI-RYTEHT--KVCPVCKKEFTSTD 114
Query: 369 ELRQHVRQH 377
HV +
Sbjct: 115 SALDHVCKK 123
Score = 26.8 bits (58), Expect = 7.4
Identities = 14/84 (16%), Positives = 23/84 (27%), Gaps = 3/84 (3%)
Query: 313 SLLARHVSTHAIQYTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQ 372
S +++S H H+ +LT RL + +
Sbjct: 8 SGSKKYLSNHK-GIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLI--HNPQLLDESSYLY 64
Query: 373 HVRQHTDERPFPCPVCQRTFRRKV 396
+ F CP+C F V
Sbjct: 65 RLLASKAISQFVCPLCLMPFSSSV 88
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 40.1 bits (93), Expect = 1e-04
Identities = 19/119 (15%), Positives = 30/119 (25%), Gaps = 21/119 (17%)
Query: 235 SAYELRQHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISH--SSYHG 292
S + + T F C C + EL H + H
Sbjct: 3 SGSSGKLYGSIFTGASKFRCKDCSAAYDTLV-----------------ELTVHMNETGHY 45
Query: 293 GEERRYVCNHMQCTRRFHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLH 349
++ N+ L Q C CGH F + L+ H+ +
Sbjct: 46 RDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 38.6 bits (89), Expect = 6e-04
Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 6/91 (6%)
Query: 311 SASLLARHVSTH--AIQYTCHMCGHMFTCKRRLTQHLARL-HTGSLSYPCTQCPGKFYSA 367
S S + S A ++ C C + LT H+ H ++ K +S
Sbjct: 3 SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSK 62
Query: 368 YE---LRQHVRQHTDERPFPCPVCQRTFRRK 395
L + + ++ C C +F
Sbjct: 63 PRKRSLLEMEGKEDAQKVLKCMYCGHSFESL 93
Score = 35.5 bits (81), Expect = 0.007
Identities = 14/103 (13%), Positives = 29/103 (28%), Gaps = 9/103 (8%)
Query: 151 QELISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHV-STHAIQYTCHMCGHMFTCKRR 209
+ S G ++ C C+ + + L H+ T + H + +
Sbjct: 5 SSGKLYGSIFTGA-SKFRC--KDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWS 61
Query: 210 LTQH-----LARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHT 247
+ + C C F S +L H+ +
Sbjct: 62 KPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 35.5 bits (81), Expect = 0.007
Identities = 14/103 (13%), Positives = 29/103 (28%), Gaps = 9/103 (8%)
Query: 282 QELISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHV-STHAIQYTCHMCGHMFTCKRR 340
+ S G ++ C C+ + + L H+ T + H + +
Sbjct: 5 SSGKLYGSIFTGA-SKFRC--KDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWS 61
Query: 341 LTQH-----LARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHT 378
+ + C C F S +L H+ +
Sbjct: 62 KPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 34.7 bits (79), Expect = 0.011
Identities = 18/103 (17%), Positives = 28/103 (27%), Gaps = 15/103 (14%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRL 275
+ TG+ + C C + + EL H+ T
Sbjct: 12 SIFTGASKFRCKDCSAAYDTLVELTVHM-NETGHYRDDNHETDNNN-------------- 56
Query: 276 FCLYFPQELISHSSYHGGEERRYVCNHMQCTRRFHSASLLARH 318
+ S G E+ + V M C F S L+ H
Sbjct: 57 PKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 31.7 bits (71), Expect = 0.12
Identities = 13/110 (11%), Positives = 32/110 (29%), Gaps = 20/110 (18%)
Query: 28 IQVHLRLHSGERRFPCEYCSLLVYPVLILFRFIFVCTQGSADSHKHHLKDHVNKI-HLHP 86
+++ + +G +F C+ C +A L H+N+ H
Sbjct: 7 GKLYGSIFTGASKFRCKDC-------------------SAAYDTLVELTVHMNETGHYRD 47
Query: 87 KTFSCNSCGQTWLGYTSWKQHVAACREKRRKETFPCKRCDERFSTRDGLE 136
++ + + ++ ++ C C F + L
Sbjct: 48 DNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLS 97
Score = 30.5 bits (68), Expect = 0.37
Identities = 6/31 (19%), Positives = 9/31 (29%)
Query: 366 SAYELRQHVRQHTDERPFPCPVCQRTFRRKV 396
S + + T F C C + V
Sbjct: 3 SGSSGKLYGSIFTGASKFRCKDCSAAYDTLV 33
Score = 26.3 bits (57), Expect = 9.8
Identities = 19/103 (18%), Positives = 28/103 (27%), Gaps = 22/103 (21%)
Query: 120 FPCKRCDERFSTRDGLESFTFSLRLFCLYFPQELISH--SSYHGGEERRYVCNHMQCTRR 177
F CK C + T EL H + H ++ N+
Sbjct: 20 FRCKDCSAAYDTLV------------------ELTVHMNETGHYRDDNHETDNNNPKRWS 61
Query: 178 FHSASLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLH 218
L Q C CGH F + L+ H+ +
Sbjct: 62 KPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 38.3 bits (90), Expect = 1e-04
Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 216 RLHTGSLSYPCTQCPGK-FYSAYELRQHVRQ-HTDERPFPCPVCQRTF 261
+ Y C C GK F L H++Q HT ERP C V
Sbjct: 5 SSGSVGKPYICQSC-GKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 38.3 bits (90), Expect = 1e-04
Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 347 RLHTGSLSYPCTQCPGK-FYSAYELRQHVRQ-HTDERPFPCPVCQRTF 392
+ Y C C GK F L H++Q HT ERP C V
Sbjct: 5 SSGSVGKPYICQSC-GKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 37.9 bits (89), Expect = 2e-04
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 187 HVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYS 235
S+ ++ Y C CG F+ L H+ ++HT + C S
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW-VSGPS 52
Score = 37.9 bits (89), Expect = 2e-04
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 318 HVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYS 366
S+ ++ Y C CG F+ L H+ ++HT + C S
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW-VSGPS 52
Score = 32.2 bits (74), Expect = 0.025
Identities = 10/65 (15%), Positives = 17/65 (26%), Gaps = 19/65 (29%)
Query: 31 HLRLHSGERRFPCEYCSLLVYPVLILFRFIFVCTQGSADSHKHHLKDHVNKIHLHPKTFS 90
S + + C+ C G S HL H+ ++H +
Sbjct: 3 SGSSGSVGKPYICQSC-------------------GKGFSRPDHLNGHIKQVHTSERPHK 43
Query: 91 CNSCG 95
C
Sbjct: 44 CQVWV 48
Score = 27.2 bits (61), Expect = 1.7
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 242 HVRQHTDERPFPCPVCQRTFRRK 264
+ +P+ C C + F R
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRP 25
Score = 27.2 bits (61), Expect = 1.7
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 373 HVRQHTDERPFPCPVCQRTFRRK 395
+ +P+ C C + F R
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRP 25
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 37.7 bits (88), Expect = 3e-04
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 216 RLHTGSLSYPCTQ--CPGKFYSAYELRQHVRQHTDERPFPC 254
TG + CT C +F + EL +H R H+ +P
Sbjct: 5 SSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 37.7 bits (88), Expect = 3e-04
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 347 RLHTGSLSYPCTQ--CPGKFYSAYELRQHVRQHTDERPFPC 385
TG + CT C +F + EL +H R H+ +P
Sbjct: 5 SSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 32.3 bits (74), Expect = 0.018
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 155 SHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTH 191
S S GE + + C C RF + L+RH +H
Sbjct: 2 SSGSSGTGE-KPFACTWPGCGWRFSRSDELSRHRRSH 37
Score = 32.3 bits (74), Expect = 0.018
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 286 SHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTH 322
S S GE + + C C RF + L+RH +H
Sbjct: 2 SSGSSGTGE-KPFACTWPGCGWRFSRSDELSRHRRSH 37
Score = 31.1 bits (71), Expect = 0.045
Identities = 14/62 (22%), Positives = 17/62 (27%), Gaps = 20/62 (32%)
Query: 242 HVRQHTDERPFPC--PVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYV 299
T E+PF C P C F R EL H H G +
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSD-----------------ELSRHRRSHSG-VKPSG 44
Query: 300 CN 301
+
Sbjct: 45 PS 46
Score = 29.6 bits (67), Expect = 0.15
Identities = 9/24 (37%), Positives = 10/24 (41%), Gaps = 2/24 (8%)
Query: 373 HVRQHTDERPFPC--PVCQRTFRR 394
T E+PF C P C F R
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSR 26
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 37.5 bits (88), Expect = 3e-04
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG + CT C F + L H R HT E+ P
Sbjct: 5 SSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 37.5 bits (88), Expect = 3e-04
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG + CT C F + L H R HT E+ P
Sbjct: 5 SSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 32.5 bits (75), Expect = 0.013
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
+ C CG F K L H R+HTG S P +
Sbjct: 13 FECTHCGKSFRAKGNLVTH-QRIHTGEKSGPSS 44
Score = 32.5 bits (75), Expect = 0.013
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
+ C CG F K L H R+HTG S P +
Sbjct: 13 FECTHCGKSFRAKGNLVTH-QRIHTGEKSGPSS 44
Score = 30.2 bits (69), Expect = 0.094
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 18/60 (30%)
Query: 242 HVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVCN 301
T ++PF C C ++FR KG L++H H G E+ +
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKG-----------------NLVTHQRIHTG-EKSGPSS 44
Score = 28.3 bits (64), Expect = 0.42
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 373 HVRQHTDERPFPCPVCQRTFRRK 395
T ++PF C C ++FR K
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAK 25
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 38.1 bits (89), Expect = 3e-04
Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 20/86 (23%)
Query: 239 LRQHVRQHTDERPFPCPV--CQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEER 296
+ R C C +T+ + L +H+ H GE +
Sbjct: 5 SSGPQIDSSRIRSHICSHPGCGKTYFKSS-----------------HLKAHTRTHTGE-K 46
Query: 297 RYVCNHMQCTRRFHSASLLARHVSTH 322
+ C+ C RRF + L+RH TH
Sbjct: 47 PFSCSWKGCERRFARSDELSRHRRTH 72
Score = 35.1 bits (81), Expect = 0.003
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 216 RLHTGSLSYPCTQ--CPGKFYSAYELRQHVRQHTDERPFPC--PVCQRTFRR 263
+ S+ C+ C ++ + L+ H R HT E+PF C C+R F R
Sbjct: 10 IDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Score = 35.1 bits (81), Expect = 0.003
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 347 RLHTGSLSYPCTQ--CPGKFYSAYELRQHVRQHTDERPFPC--PVCQRTFRR 394
+ S+ C+ C ++ + L+ H R HT E+PF C C+R F R
Sbjct: 10 IDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Score = 32.4 bits (74), Expect = 0.028
Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 29/87 (33%)
Query: 162 GEERRYVCNHMQCTRRFHSASLLARHVSTHAIQYTCHMCGHMFTCKRRLTQHLARLHTGS 221
R ++C+H C + + +S L H R HTG
Sbjct: 13 SRIRSHICSHPGCGKTYFKSSHLKAHT---------------------------RTHTGE 45
Query: 222 LSYPCTQ--CPGKFYSAYELRQHVRQH 246
+ C+ C +F + EL +H R H
Sbjct: 46 KPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 32.4 bits (74), Expect = 0.028
Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 29/87 (33%)
Query: 293 GEERRYVCNHMQCTRRFHSASLLARHVSTHAIQYTCHMCGHMFTCKRRLTQHLARLHTGS 352
R ++C+H C + + +S L H R HTG
Sbjct: 13 SRIRSHICSHPGCGKTYFKSSHLKAHT---------------------------RTHTGE 45
Query: 353 LSYPCTQ--CPGKFYSAYELRQHVRQH 377
+ C+ C +F + EL +H R H
Sbjct: 46 KPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 31.6 bits (72), Expect = 0.051
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 153 LISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTH 191
L +H+ H GE + + C+ C RRF + L+RH TH
Sbjct: 35 LKAHTRTHTGE-KPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 25.4 bits (56), Expect = 9.9
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 29 QVHLRLHSGERRFPCEY 45
+ H R H+GE+ F C +
Sbjct: 36 KAHTRTHTGEKPFSCSW 52
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 37.2 bits (86), Expect = 4e-04
Identities = 9/44 (20%), Positives = 13/44 (29%)
Query: 214 LARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVC 257
C C F Y L +H H+ E+P+
Sbjct: 3 SGSSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 37.2 bits (86), Expect = 4e-04
Identities = 9/44 (20%), Positives = 13/44 (29%)
Query: 345 LARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVC 388
C C F Y L +H H+ E+P+
Sbjct: 3 SGSSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 29.9 bits (67), Expect = 0.12
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 194 QYTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPG 231
Q C +CG +F L +H H+G Y G
Sbjct: 12 QVACEICGKIFRDVYHLNRH-KLSHSGEKPYSSGPSSG 48
Score = 29.9 bits (67), Expect = 0.12
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 325 QYTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPG 362
Q C +CG +F L +H H+G Y G
Sbjct: 12 QVACEICGKIFRDVYHLNRH-KLSHSGEKPYSSGPSSG 48
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 4e-04
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG Y C +C F A L +H R H+ E+P
Sbjct: 5 SSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 37.1 bits (87), Expect = 4e-04
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG Y C +C F A L +H R H+ E+P
Sbjct: 5 SSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.095
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
Y C CG F+ L +H RLH+G +
Sbjct: 13 YNCKECGKSFSRAPCLLKH-ERLHSGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.095
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
Y C CG F+ L +H RLH+G +
Sbjct: 13 YNCKECGKSFSRAPCLLKH-ERLHSGEKPSGPS 44
Score = 27.5 bits (62), Expect = 0.96
Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 18/60 (30%)
Query: 242 HVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVCN 301
T E+ + C C ++F R L+ H H G E+ +
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAP-----------------CLLKHERLHSG-EKPSGPS 44
Score = 27.5 bits (62), Expect = 0.97
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 373 HVRQHTDERPFPCPVCQRTFRRKVC 397
T E+ + C C ++F R C
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPC 27
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 36.4 bits (85), Expect = 7e-04
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG Y C +C F A L +H R H+ E+P
Sbjct: 5 SSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 36.4 bits (85), Expect = 7e-04
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG Y C +C F A L +H R H+ E+P
Sbjct: 5 SSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.015
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 185 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQ 228
S+ + Y C CG F L +H R+H+G +
Sbjct: 1 GSSGSSGTGEKPYNCKECGKSFRWASCLLKH-QRVHSGEKPSGPSS 45
Score = 32.5 bits (75), Expect = 0.015
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 316 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQ 359
S+ + Y C CG F L +H R+H+G +
Sbjct: 1 GSSGSSGTGEKPYNCKECGKSFRWASCLLKH-QRVHSGEKPSGPSS 45
Score = 26.0 bits (58), Expect = 3.3
Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 18/60 (30%)
Query: 242 HVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVCN 301
T E+P+ C C ++FR L+ H H G E+ +
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWAS-----------------CLLKHQRVHSG-EKPSGPS 44
Score = 26.0 bits (58), Expect = 3.5
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 373 HVRQHTDERPFPCPVCQRTFRRK 395
T E+P+ C C ++FR
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWA 25
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.4 bits (85), Expect = 7e-04
Identities = 13/39 (33%), Positives = 15/39 (38%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG Y C +C F QH R HT +RP
Sbjct: 5 SSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 36.4 bits (85), Expect = 7e-04
Identities = 13/39 (33%), Positives = 15/39 (38%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG Y C +C F QH R HT +RP
Sbjct: 5 SSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 30.2 bits (69), Expect = 0.090
Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
Y C CG F TQH RLHTG +
Sbjct: 13 YKCMECGKAFGDNSSCTQH-QRLHTGQRPSGPS 44
Score = 30.2 bits (69), Expect = 0.090
Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
Y C CG F TQH RLHTG +
Sbjct: 13 YKCMECGKAFGDNSSCTQH-QRLHTGQRPSGPS 44
Score = 27.2 bits (61), Expect = 1.2
Identities = 10/61 (16%), Positives = 15/61 (24%), Gaps = 18/61 (29%)
Query: 242 HVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVCN 301
T E+P+ C C + F H H G +R +
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNS-----------------SCTQHQRLHTG-QRPSGPS 44
Query: 302 H 302
Sbjct: 45 S 45
Score = 25.6 bits (57), Expect = 4.7
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 373 HVRQHTDERPFPCPVCQRTFRRK 395
T E+P+ C C + F
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDN 25
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 36.3 bits (85), Expect = 7e-04
Identities = 13/39 (33%), Positives = 14/39 (35%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG Y C +C F S L H R HT E
Sbjct: 5 SSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 36.3 bits (85), Expect = 7e-04
Identities = 13/39 (33%), Positives = 14/39 (35%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG Y C +C F S L H R HT E
Sbjct: 5 SSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 30.5 bits (70), Expect = 0.072
Identities = 13/44 (29%), Positives = 15/44 (34%), Gaps = 3/44 (6%)
Query: 185 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPC 226
S+ Y C+ CG F K L H R HTG
Sbjct: 1 GSSGSSGTGMKPYVCNECGKAFRSKSYLIIH-TRTHTGESGPSS 43
Score = 30.5 bits (70), Expect = 0.072
Identities = 13/44 (29%), Positives = 15/44 (34%), Gaps = 3/44 (6%)
Query: 316 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPC 357
S+ Y C+ CG F K L H R HTG
Sbjct: 1 GSSGSSGTGMKPYVCNECGKAFRSKSYLIIH-TRTHTGESGPSS 43
Score = 27.1 bits (61), Expect = 1.2
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 242 HVRQHTDERPFPCPVCQRTFRRK 264
T +P+ C C + FR K
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSK 25
Score = 27.1 bits (61), Expect = 1.2
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 373 HVRQHTDERPFPCPVCQRTFRRK 395
T +P+ C C + FR K
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSK 25
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.9 bits (84), Expect = 8e-04
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG Y C +C F Y+L H R H E+P
Sbjct: 5 SSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 35.9 bits (84), Expect = 8e-04
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG Y C +C F Y+L H R H E+P
Sbjct: 5 SSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.010
Identities = 15/62 (24%), Positives = 20/62 (32%), Gaps = 18/62 (29%)
Query: 241 QHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVC 300
T E P+ C C + F RK +LISH H G E+
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKY-----------------QLISHQRTHAG-EKPSGP 43
Query: 301 NH 302
+
Sbjct: 44 SS 45
Score = 31.3 bits (72), Expect = 0.036
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 185 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
S+ + Y CH CG F+ K +L H R H G +
Sbjct: 1 GSSGSSGTGENPYECHECGKAFSRKYQLISH-QRTHAGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.036
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 316 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
S+ + Y CH CG F+ K +L H R H G +
Sbjct: 1 GSSGSSGTGENPYECHECGKAFSRKYQLISH-QRTHAGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.15
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 372 QHVRQHTDERPFPCPVCQRTFRRK 395
T E P+ C C + F RK
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRK 25
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 36.0 bits (84), Expect = 0.001
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG Y C +C F + L H R HT E+P
Sbjct: 5 SSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 36.0 bits (84), Expect = 0.001
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG Y C +C F + L H R HT E+P
Sbjct: 5 SSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 31.0 bits (71), Expect = 0.053
Identities = 14/45 (31%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 185 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
S+ Q Y C CG F K L H R HTG +
Sbjct: 1 GSSGSSGTGQRPYECIECGKAFKTKSSLICH-RRSHTGEKPSGPS 44
Score = 31.0 bits (71), Expect = 0.053
Identities = 14/45 (31%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 316 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
S+ Q Y C CG F K L H R HTG +
Sbjct: 1 GSSGSSGTGQRPYECIECGKAFKTKSSLICH-RRSHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.10
Identities = 13/61 (21%), Positives = 19/61 (31%), Gaps = 18/61 (29%)
Query: 241 QHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVC 300
T +RP+ C C + F+ K LI H H G E+
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKS-----------------SLICHRRSHTG-EKPSGP 43
Query: 301 N 301
+
Sbjct: 44 S 44
Score = 29.4 bits (67), Expect = 0.18
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 372 QHVRQHTDERPFPCPVCQRTFRRK 395
T +RP+ C C + F+ K
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTK 25
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 35.9 bits (84), Expect = 0.001
Identities = 12/39 (30%), Positives = 14/39 (35%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG Y C +C F + L H R HT E
Sbjct: 5 SSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 35.9 bits (84), Expect = 0.001
Identities = 12/39 (30%), Positives = 14/39 (35%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG Y C +C F + L H R HT E
Sbjct: 5 SSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 29.4 bits (67), Expect = 0.21
Identities = 11/32 (34%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPC 226
Y C+ C F K L H R HTG
Sbjct: 13 YECNECQKAFNTKSNLMVH-QRTHTGESGPSS 43
Score = 29.4 bits (67), Expect = 0.21
Identities = 11/32 (34%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPC 357
Y C+ C F K L H R HTG
Sbjct: 13 YECNECQKAFNTKSNLMVH-QRTHTGESGPSS 43
Score = 28.2 bits (64), Expect = 0.56
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 242 HVRQHTDERPFPCPVCQRTFRRK 264
T E+P+ C CQ+ F K
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTK 25
Score = 28.2 bits (64), Expect = 0.56
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 373 HVRQHTDERPFPCPVCQRTFRRK 395
T E+P+ C CQ+ F K
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTK 25
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 0.001
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG + CT+C F L H + HT E+P
Sbjct: 5 SSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 36.0 bits (84), Expect = 0.001
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG + CT+C F L H + HT E+P
Sbjct: 5 SSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.021
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 185 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQ 228
S+ + C CG FT K L+ H ++HTG +
Sbjct: 1 GSSGSSGTGGKHFECTECGKAFTRKSTLSMH-QKIHTGEKPSGPSS 45
Score = 32.1 bits (74), Expect = 0.021
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 316 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQ 359
S+ + C CG FT K L+ H ++HTG +
Sbjct: 1 GSSGSSGTGGKHFECTECGKAFTRKSTLSMH-QKIHTGEKPSGPSS 45
Score = 29.8 bits (68), Expect = 0.15
Identities = 12/62 (19%), Positives = 16/62 (25%), Gaps = 18/62 (29%)
Query: 241 QHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVC 300
T + F C C + F RK L H H G E+
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKS-----------------TLSMHQKIHTG-EKPSGP 43
Query: 301 NH 302
+
Sbjct: 44 SS 45
Score = 28.6 bits (65), Expect = 0.41
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 372 QHVRQHTDERPFPCPVCQRTFRRK 395
T + F C C + F RK
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRK 25
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 0.001
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
+G Y C +C F L H R HT E+P
Sbjct: 5 SSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 36.0 bits (84), Expect = 0.001
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
+G Y C +C F L H R HT E+P
Sbjct: 5 SSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.093
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQ 228
Y C+ CG F+ K L+ H R HTG +
Sbjct: 13 YGCNECGKTFSQKSILSAH-QRTHTGEKPSGPSS 45
Score = 30.2 bits (69), Expect = 0.093
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQ 359
Y C+ CG F+ K L+ H R HTG +
Sbjct: 13 YGCNECGKTFSQKSILSAH-QRTHTGEKPSGPSS 45
Score = 27.9 bits (63), Expect = 0.78
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 18/60 (30%)
Query: 242 HVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVCN 301
+ E+P+ C C +TF +K L +H H G E+ +
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKS-----------------ILSAHQRTHTG-EKPSGPS 44
Score = 26.7 bits (60), Expect = 1.5
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 373 HVRQHTDERPFPCPVCQRTFRRK 395
+ E+P+ C C +TF +K
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQK 25
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 37.6 bits (86), Expect = 0.001
Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 4/70 (5%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
Y C +C + H + C C +F+S ++H + + C
Sbjct: 17 YQCRLCNAKLSSLLEQGSHERLCRN---AAVCPYCSLRFFSPELKQEH-ESKCEYKKLTC 72
Query: 255 PVCQRTFRRK 264
C RTF+
Sbjct: 73 LECMRTFKSS 82
Score = 37.6 bits (86), Expect = 0.001
Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 4/70 (5%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
Y C +C + H + C C +F+S ++H + + C
Sbjct: 17 YQCRLCNAKLSSLLEQGSHERLCRN---AAVCPYCSLRFFSPELKQEH-ESKCEYKKLTC 72
Query: 386 PVCQRTFRRK 395
C RTF+
Sbjct: 73 LECMRTFKSS 82
Score = 36.0 bits (82), Expect = 0.004
Identities = 24/113 (21%), Positives = 37/113 (32%), Gaps = 24/113 (21%)
Query: 117 KETFPCKRCDERFSTRDGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVCNHMQCTR 176
KE + C+ C+ + S+ E SH VC + C+
Sbjct: 14 KEVYQCRLCNAKLSSL------------------LEQGSHERLC---RNAAVCPY--CSL 50
Query: 177 RFHSASLLARHVSTHAI-QYTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQ 228
RF S L H S + TC C F + +H +H + P +
Sbjct: 51 RFFSPELKQEHESKCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMAPTSG 103
Score = 35.6 bits (81), Expect = 0.005
Identities = 14/84 (16%), Positives = 22/84 (26%), Gaps = 4/84 (4%)
Query: 160 HGGEERRYVCNHMQCTRRFHSASLLARHVSTHAIQYTCHMCGHMFTCKRRLTQHLARLHT 219
+ Y C C + S H C C F +H
Sbjct: 10 PVENKEVYQCRL--CNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEH--ESKC 65
Query: 220 GSLSYPCTQCPGKFYSAYELRQHV 243
C +C F S++ + +H
Sbjct: 66 EYKKLTCLECMRTFKSSFSIWRHQ 89
Score = 35.6 bits (81), Expect = 0.005
Identities = 14/84 (16%), Positives = 22/84 (26%), Gaps = 4/84 (4%)
Query: 291 HGGEERRYVCNHMQCTRRFHSASLLARHVSTHAIQYTCHMCGHMFTCKRRLTQHLARLHT 350
+ Y C C + S H C C F +H
Sbjct: 10 PVENKEVYQCRL--CNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEH--ESKC 65
Query: 351 GSLSYPCTQCPGKFYSAYELRQHV 374
C +C F S++ + +H
Sbjct: 66 EYKKLTCLECMRTFKSSFSIWRHQ 89
Score = 35.3 bits (80), Expect = 0.006
Identities = 21/121 (17%), Positives = 33/121 (27%), Gaps = 23/121 (19%)
Query: 240 RQHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYV 299
++ + C +C E SH V
Sbjct: 5 SSGASPVENKEVYQCRLCNAKLSSL-----------------LEQGSHERLC---RNAAV 44
Query: 300 CNHMQCTRRFHSASLLARHVSTHAI-QYTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
C + C+ RF S L H S + TC C F + +H +H + P +
Sbjct: 45 CPY--CSLRFFSPELKQEHESKCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMAPTS 102
Query: 359 Q 359
Sbjct: 103 G 103
Score = 29.9 bits (66), Expect = 0.54
Identities = 12/42 (28%), Positives = 12/42 (28%), Gaps = 2/42 (4%)
Query: 355 YPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRKV 396
Y C C K S E H R CP C F
Sbjct: 17 YQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPE 56
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 35.6 bits (83), Expect = 0.001
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG Y C+QC F +L H R HT +P
Sbjct: 5 SSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 35.6 bits (83), Expect = 0.001
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG Y C+QC F +L H R HT +P
Sbjct: 5 SSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 31.3 bits (72), Expect = 0.034
Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 185 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
S+ Y C C F+ K +L H R HTG +
Sbjct: 1 GSSGSSGTGVKPYGCSQCAKTFSLKSQLIVH-QRSHTGVKPSGPS 44
Score = 31.3 bits (72), Expect = 0.034
Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 316 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
S+ Y C C F+ K +L H R HTG +
Sbjct: 1 GSSGSSGTGVKPYGCSQCAKTFSLKSQLIVH-QRSHTGVKPSGPS 44
Score = 29.0 bits (66), Expect = 0.23
Identities = 12/60 (20%), Positives = 18/60 (30%), Gaps = 18/60 (30%)
Query: 242 HVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVCN 301
T +P+ C C +TF K +LI H H G + +
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKS-----------------QLIVHQRSHTG-VKPSGPS 44
Score = 28.7 bits (65), Expect = 0.39
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 373 HVRQHTDERPFPCPVCQRTFRRK 395
T +P+ C C +TF K
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLK 25
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 0.001
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG Y C +C F +L +H R HT E+P
Sbjct: 5 SSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 0.001
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG Y C +C F +L +H R HT E+P
Sbjct: 5 SSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.14
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
Y C+ CG F+ +L +H R+HTG +
Sbjct: 13 YQCNECGKAFSQTSKLARH-QRVHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.14
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
Y C+ CG F+ +L +H R+HTG +
Sbjct: 13 YQCNECGKAFSQTSKLARH-QRVHTGEKPSGPS 44
Score = 27.1 bits (61), Expect = 1.2
Identities = 10/61 (16%), Positives = 17/61 (27%), Gaps = 18/61 (29%)
Query: 242 HVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVCN 301
T +P+ C C + F + +L H H G E+ +
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTS-----------------KLARHQRVHTG-EKPSGPS 44
Query: 302 H 302
Sbjct: 45 S 45
Score = 25.2 bits (56), Expect = 5.9
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 373 HVRQHTDERPFPCPVCQRTFRRK 395
T +P+ C C + F +
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQT 25
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 0.001
Identities = 13/39 (33%), Positives = 15/39 (38%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG Y C C F L QH + HT E+P
Sbjct: 5 SSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 0.001
Identities = 13/39 (33%), Positives = 15/39 (38%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG Y C C F L QH + HT E+P
Sbjct: 5 SSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.020
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 185 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
S+ + Y C +C FT K L QH + HTG +
Sbjct: 1 GSSGSSGTGEKPYECKVCSKAFTQKAHLAQH-QKTHTGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.020
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 316 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
S+ + Y C +C FT K L QH + HTG +
Sbjct: 1 GSSGSSGTGEKPYECKVCSKAFTQKAHLAQH-QKTHTGEKPSGPS 44
Score = 28.3 bits (64), Expect = 0.46
Identities = 13/61 (21%), Positives = 19/61 (31%), Gaps = 18/61 (29%)
Query: 241 QHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVC 300
T E+P+ C VC + F +K L H H G E+
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKA-----------------HLAQHQKTHTG-EKPSGP 43
Query: 301 N 301
+
Sbjct: 44 S 44
Score = 27.9 bits (63), Expect = 0.75
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 372 QHVRQHTDERPFPCPVCQRTFRRK 395
T E+P+ C VC + F +K
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQK 25
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 0.001
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG Y C +C F + L H H+ E+P
Sbjct: 5 SSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 35.6 bits (83), Expect = 0.001
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG Y C +C F + L H H+ E+P
Sbjct: 5 SSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 31.0 bits (71), Expect = 0.047
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 185 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
S+ + Y C+ CG F + L H H+G +
Sbjct: 1 GSSGSSGTGEKPYKCNECGKAFRARSSLAIH-QATHSGEKPSGPS 44
Score = 31.0 bits (71), Expect = 0.047
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 316 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
S+ + Y C+ CG F + L H H+G +
Sbjct: 1 GSSGSSGTGEKPYKCNECGKAFRARSSLAIH-QATHSGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.72
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 241 QHVRQHTDERPFPCPVCQRTFRRK 264
T E+P+ C C + FR +
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAR 25
Score = 27.9 bits (63), Expect = 0.72
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 372 QHVRQHTDERPFPCPVCQRTFRRK 395
T E+P+ C C + FR +
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAR 25
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 0.001
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
G Y C++C F S L H+R H+ E+P
Sbjct: 5 SSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 35.6 bits (83), Expect = 0.001
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
G Y C++C F S L H+R H+ E+P
Sbjct: 5 SSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 33.7 bits (78), Expect = 0.005
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 185 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
S+ A + Y C CG F+ K L H R H+G +
Sbjct: 1 GSSGSSGAGEKPYGCSECGKAFSSKSYLIIH-MRTHSGEKPSGPS 44
Score = 33.7 bits (78), Expect = 0.005
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 316 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
S+ A + Y C CG F+ K L H R H+G +
Sbjct: 1 GSSGSSGAGEKPYGCSECGKAFSSKSYLIIH-MRTHSGEKPSGPS 44
Score = 26.7 bits (60), Expect = 1.9
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 241 QHVRQHTDERPFPCPVCQRTFRRK 264
E+P+ C C + F K
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSK 25
Score = 26.7 bits (60), Expect = 1.9
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 372 QHVRQHTDERPFPCPVCQRTFRRK 395
E+P+ C C + F K
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSK 25
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.5 bits (83), Expect = 0.001
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG + C++C F + L H R HT E+P
Sbjct: 5 SSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 35.5 bits (83), Expect = 0.001
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG + C++C F + L H R HT E+P
Sbjct: 5 SSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 30.9 bits (71), Expect = 0.062
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
Query: 185 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
S+ + + C C F K L H R HTG +
Sbjct: 1 GSSGSSGTGEKPFECSECQKAFNTKSNLIVH-QRTHTGEKPSGPS 44
Score = 30.9 bits (71), Expect = 0.062
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
Query: 316 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
S+ + + C C F K L H R HTG +
Sbjct: 1 GSSGSSGTGEKPFECSECQKAFNTKSNLIVH-QRTHTGEKPSGPS 44
Score = 27.4 bits (62), Expect = 0.97
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 242 HVRQHTDERPFPCPVCQRTFRRK 264
T E+PF C CQ+ F K
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTK 25
Score = 27.4 bits (62), Expect = 0.97
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 373 HVRQHTDERPFPCPVCQRTFRRK 395
T E+PF C CQ+ F K
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTK 25
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 35.6 bits (83), Expect = 0.001
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
+G + C +C FY+ + H R H+ E+P
Sbjct: 5 SSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 35.6 bits (83), Expect = 0.001
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
+G + C +C FY+ + H R H+ E+P
Sbjct: 5 SSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.16
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
+ C CG F + H R H+G +
Sbjct: 13 FKCEECGKGFYTNSQCYSH-QRSHSGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.16
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
+ C CG F + H R H+G +
Sbjct: 13 FKCEECGKGFYTNSQCYSH-QRSHSGEKPSGPS 44
Score = 27.5 bits (62), Expect = 0.89
Identities = 11/61 (18%), Positives = 17/61 (27%), Gaps = 18/61 (29%)
Query: 241 QHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVC 300
+ E+PF C C + F + SH H G E+
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNS-----------------QCYSHQRSHSG-EKPSGP 43
Query: 301 N 301
+
Sbjct: 44 S 44
Score = 27.1 bits (61), Expect = 1.2
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 372 QHVRQHTDERPFPCPVCQRTFRRK 395
+ E+PF C C + F
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTN 25
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 0.001
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG Y C +C + S + L H + HT ERP
Sbjct: 5 SSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 35.6 bits (83), Expect = 0.001
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG Y C +C + S + L H + HT ERP
Sbjct: 5 SSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 30.2 bits (69), Expect = 0.094
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQ 228
Y C CG + K L H ++HTG +
Sbjct: 13 YKCEKCGKGYNSKFNLDMH-QKVHTGERPSGPSS 45
Score = 30.2 bits (69), Expect = 0.094
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQ 359
Y C CG + K L H ++HTG +
Sbjct: 13 YKCEKCGKGYNSKFNLDMH-QKVHTGERPSGPSS 45
Score = 27.1 bits (61), Expect = 1.2
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 242 HVRQHTDERPFPCPVCQRTFRRK 264
T E+P+ C C + + K
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSK 25
Score = 27.1 bits (61), Expect = 1.2
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 373 HVRQHTDERPFPCPVCQRTFRRK 395
T E+P+ C C + + K
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSK 25
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 0.001
Identities = 10/39 (25%), Positives = 15/39 (38%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG + C +C F + L +H+R H P
Sbjct: 5 SSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 35.6 bits (83), Expect = 0.001
Identities = 10/39 (25%), Positives = 15/39 (38%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG + C +C F + L +H+R H P
Sbjct: 5 SSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 27.9 bits (63), Expect = 0.58
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 185 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQ 228
S+ + + C CG F+ L +HL R H + +
Sbjct: 1 GSSGSSGTGEKPFQCKECGMNFSWSCSLFKHL-RSHERTDPSGPSS 45
Score = 27.9 bits (63), Expect = 0.58
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 316 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQ 359
S+ + + C CG F+ L +HL R H + +
Sbjct: 1 GSSGSSGTGEKPFQCKECGMNFSWSCSLFKHL-RSHERTDPSGPSS 45
Score = 26.8 bits (60), Expect = 1.6
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 155 SHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTH 191
S S GE + + C +C F + L +H+ +H
Sbjct: 2 SSGSSGTGE-KPFQCK--ECGMNFSWSCSLFKHLRSH 35
Score = 26.8 bits (60), Expect = 1.6
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 286 SHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTH 322
S S GE + + C +C F + L +H+ +H
Sbjct: 2 SSGSSGTGE-KPFQCK--ECGMNFSWSCSLFKHLRSH 35
Score = 26.4 bits (59), Expect = 2.2
Identities = 7/24 (29%), Positives = 8/24 (33%)
Query: 241 QHVRQHTDERPFPCPVCQRTFRRK 264
T E+PF C C F
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWS 25
Score = 26.4 bits (59), Expect = 2.2
Identities = 7/24 (29%), Positives = 8/24 (33%)
Query: 372 QHVRQHTDERPFPCPVCQRTFRRK 395
T E+PF C C F
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWS 25
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 0.001
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG Y C++C F L H R HT E+P
Sbjct: 5 SSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 0.001
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG Y C++C F L H R HT E+P
Sbjct: 5 SSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.023
Identities = 14/62 (22%), Positives = 18/62 (29%), Gaps = 18/62 (29%)
Query: 241 QHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVC 300
T ER + C C + F RK LI H H G E+
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKS-----------------TLIMHQRIHTG-EKPSGP 43
Query: 301 NH 302
+
Sbjct: 44 SS 45
Score = 30.2 bits (69), Expect = 0.096
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 185 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
S+ + Y C CG F K L H R+HTG +
Sbjct: 1 GSSGSSGTGERHYECSECGKAFARKSTLIMH-QRIHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.096
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 316 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
S+ + Y C CG F K L H R+HTG +
Sbjct: 1 GSSGSSGTGERHYECSECGKAFARKSTLIMH-QRIHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.16
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 372 QHVRQHTDERPFPCPVCQRTFRRK 395
T ER + C C + F RK
Sbjct: 2 SSGSSGTGERHYECSECGKAFARK 25
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 0.001
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG Y C+ C F L H R H+ ++P
Sbjct: 5 SSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 35.6 bits (83), Expect = 0.001
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG Y C+ C F L H R H+ ++P
Sbjct: 5 SSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 30.2 bits (69), Expect = 0.11
Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 185 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
S+ + Y C +CG F+ ++ L+ H R+H+G +
Sbjct: 1 GSSGSSGTGEKPYECSVCGKAFSHRQSLSVH-QRIHSGKKPSGPS 44
Score = 30.2 bits (69), Expect = 0.11
Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 316 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
S+ + Y C +CG F+ ++ L+ H R+H+G +
Sbjct: 1 GSSGSSGTGEKPYECSVCGKAFSHRQSLSVH-QRIHSGKKPSGPS 44
Score = 29.4 bits (67), Expect = 0.18
Identities = 11/62 (17%), Positives = 18/62 (29%), Gaps = 18/62 (29%)
Query: 241 QHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVC 300
T E+P+ C VC + F + L H H G ++
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQ-----------------SLSVHQRIHSG-KKPSGP 43
Query: 301 NH 302
+
Sbjct: 44 SS 45
Score = 27.1 bits (61), Expect = 1.4
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 372 QHVRQHTDERPFPCPVCQRTFRRK 395
T E+P+ C VC + F +
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHR 25
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 35.2 bits (82), Expect = 0.001
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG Y C +C F +L H HT E+P
Sbjct: 5 SSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 0.001
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG Y C +C F +L H HT E+P
Sbjct: 5 SSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 31.4 bits (72), Expect = 0.038
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
Y C CG F C+R L H +HTG +
Sbjct: 13 YKCEECGKGFICRRDLYTH-HMVHTGEKPSGPS 44
Score = 31.4 bits (72), Expect = 0.038
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
Y C CG F C+R L H +HTG +
Sbjct: 13 YKCEECGKGFICRRDLYTH-HMVHTGEKPSGPS 44
Score = 26.0 bits (58), Expect = 3.8
Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 18/60 (30%)
Query: 242 HVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVCN 301
T E+P+ C C + F + +L +H H G E+ +
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRR-----------------DLYTHHMVHTG-EKPSGPS 44
Score = 25.6 bits (57), Expect = 4.4
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 373 HVRQHTDERPFPCPVCQRTFRRK 395
T E+P+ C C + F +
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICR 25
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.001
Identities = 13/39 (33%), Positives = 15/39 (38%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG Y C C F L QH R H+ E+P
Sbjct: 5 SSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 35.2 bits (82), Expect = 0.001
Identities = 13/39 (33%), Positives = 15/39 (38%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG Y C C F L QH R H+ E+P
Sbjct: 5 SSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.10
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
Y C +C F+ LTQH R+H+G +
Sbjct: 13 YECDVCRKAFSHHASLTQH-QRVHSGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.10
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
Y C +C F+ LTQH R+H+G +
Sbjct: 13 YECDVCRKAFSHHASLTQH-QRVHSGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.16
Identities = 12/62 (19%), Positives = 18/62 (29%), Gaps = 18/62 (29%)
Query: 241 QHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVC 300
T E+P+ C VC++ F L H H G E+
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHA-----------------SLTQHQRVHSG-EKPSGP 43
Query: 301 NH 302
+
Sbjct: 44 SS 45
Score = 27.9 bits (63), Expect = 0.73
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 372 QHVRQHTDERPFPCPVCQRTFRRK 395
T E+P+ C VC++ F
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHH 25
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.001
Identities = 12/39 (30%), Positives = 14/39 (35%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG Y C+ C F L H + HT ER
Sbjct: 5 SSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 35.2 bits (82), Expect = 0.001
Identities = 12/39 (30%), Positives = 14/39 (35%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG Y C+ C F L H + HT ER
Sbjct: 5 SSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 31.3 bits (72), Expect = 0.046
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 185 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
S+ + Y C CG FT K L H + HTG +
Sbjct: 1 GSSGSSGTGEKPYKCSDCGKAFTRKSGLHIH-QQSHTGERHSGPS 44
Score = 31.3 bits (72), Expect = 0.046
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 316 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
S+ + Y C CG FT K L H + HTG +
Sbjct: 1 GSSGSSGTGEKPYKCSDCGKAFTRKSGLHIH-QQSHTGERHSGPS 44
Score = 29.0 bits (66), Expect = 0.28
Identities = 14/61 (22%), Positives = 18/61 (29%), Gaps = 18/61 (29%)
Query: 241 QHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVC 300
T E+P+ C C + F RK L H H G ER
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKS-----------------GLHIHQQSHTG-ERHSGP 43
Query: 301 N 301
+
Sbjct: 44 S 44
Score = 27.9 bits (63), Expect = 0.66
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 372 QHVRQHTDERPFPCPVCQRTFRRK 395
T E+P+ C C + F RK
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRK 25
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.002
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG Y C++C F L H R H E+P
Sbjct: 5 SSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 35.2 bits (82), Expect = 0.002
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG Y C++C F L H R H E+P
Sbjct: 5 SSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.083
Identities = 12/62 (19%), Positives = 17/62 (27%), Gaps = 18/62 (29%)
Query: 241 QHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVC 300
T ER + C C + F +K L H H G E+
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKS-----------------TLSMHQRIHRG-EKPSGP 43
Query: 301 NH 302
+
Sbjct: 44 SS 45
Score = 30.2 bits (69), Expect = 0.10
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
Y C CG F K L+ H R+H G +
Sbjct: 13 YECSECGKAFIQKSTLSMH-QRIHRGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.10
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
Y C CG F K L+ H R+H G +
Sbjct: 13 YECSECGKAFIQKSTLSMH-QRIHRGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.57
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 372 QHVRQHTDERPFPCPVCQRTFRRK 395
T ER + C C + F +K
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQK 25
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.002
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG Y C +C F +L++H R HT E+P
Sbjct: 5 SSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 0.002
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG Y C +C F +L++H R HT E+P
Sbjct: 5 SSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.19
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
Y C CG F +L +H R+HTG +
Sbjct: 13 YNCEECGKAFIHDSQLQEH-QRIHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.19
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
Y C CG F +L +H R+HTG +
Sbjct: 13 YNCEECGKAFIHDSQLQEH-QRIHTGEKPSGPS 44
Score = 25.6 bits (57), Expect = 4.5
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 242 HVRQHTDERPFPCPVCQRTFRRK 264
T E+P+ C C + F
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHD 25
Score = 25.6 bits (57), Expect = 4.5
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 373 HVRQHTDERPFPCPVCQRTFRRK 395
T E+P+ C C + F
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHD 25
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.002
Identities = 13/39 (33%), Positives = 15/39 (38%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG Y C+ C F +L H R HT E P
Sbjct: 5 SSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 35.2 bits (82), Expect = 0.002
Identities = 13/39 (33%), Positives = 15/39 (38%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG Y C+ C F +L H R HT E P
Sbjct: 5 SSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 30.2 bits (69), Expect = 0.10
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPC 226
Y C CG F K +L H R+HTG
Sbjct: 13 YECSDCGKSFIKKSQLHVH-QRIHTGENPSGP 43
Score = 30.2 bits (69), Expect = 0.10
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPC 357
Y C CG F K +L H R+HTG
Sbjct: 13 YECSDCGKSFIKKSQLHVH-QRIHTGENPSGP 43
Score = 29.4 bits (67), Expect = 0.21
Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 18/62 (29%)
Query: 241 QHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVC 300
T E+P+ C C ++F +K +L H H G E
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKS-----------------QLHVHQRIHTG-ENPSGP 43
Query: 301 NH 302
+
Sbjct: 44 SS 45
Score = 28.3 bits (64), Expect = 0.56
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 372 QHVRQHTDERPFPCPVCQRTFRRK 395
T E+P+ C C ++F +K
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKK 25
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.002
Identities = 13/39 (33%), Positives = 15/39 (38%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG + C C F L QH R HT E+P
Sbjct: 5 SSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 0.002
Identities = 13/39 (33%), Positives = 15/39 (38%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG + C C F L QH R HT E+P
Sbjct: 5 SSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.036
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 185 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
S+ + + C CG F+ L QH R+HTG +
Sbjct: 1 GSSGSSGTGEKPFDCIDCGKAFSDHIGLNQH-RRIHTGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.036
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 316 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
S+ + + C CG F+ L QH R+HTG +
Sbjct: 1 GSSGSSGTGEKPFDCIDCGKAFSDHIGLNQH-RRIHTGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.38
Identities = 12/62 (19%), Positives = 16/62 (25%), Gaps = 18/62 (29%)
Query: 241 QHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVC 300
T E+PF C C + F L H H G E+
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHI-----------------GLNQHRRIHTG-EKPSGP 43
Query: 301 NH 302
+
Sbjct: 44 SS 45
Score = 28.3 bits (64), Expect = 0.55
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 372 QHVRQHTDERPFPCPVCQRTFRRK 395
T E+PF C C + F
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDH 25
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.002
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
+G Y C +C F L +H+++H E+
Sbjct: 5 SSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 35.2 bits (82), Expect = 0.002
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
+G Y C +C F L +H+++H E+
Sbjct: 5 SSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 29.4 bits (67), Expect = 0.17
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
Y C+ CG F L +HL + H S +
Sbjct: 13 YGCNECGKNFGRHSHLIEHL-KRHFREKSSGPS 44
Score = 29.4 bits (67), Expect = 0.17
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
Y C+ CG F L +HL + H S +
Sbjct: 13 YGCNECGKNFGRHSHLIEHL-KRHFREKSSGPS 44
Score = 28.6 bits (65), Expect = 0.38
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 241 QHVRQHTDERPFPCPVCQRTFRRK 264
+ ERP+ C C + F R
Sbjct: 2 SSGSSGSGERPYGCNECGKNFGRH 25
Score = 28.6 bits (65), Expect = 0.38
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 372 QHVRQHTDERPFPCPVCQRTFRRK 395
+ ERP+ C C + F R
Sbjct: 2 SSGSSGSGERPYGCNECGKNFGRH 25
Score = 25.6 bits (57), Expect = 4.7
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 155 SHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTH 191
S S GE R Y CN +C + F S L H+ H
Sbjct: 2 SSGSSGSGE-RPYGCN--ECGKNFGRHSHLIEHLKRH 35
Score = 25.6 bits (57), Expect = 4.7
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 286 SHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTH 322
S S GE R Y CN +C + F S L H+ H
Sbjct: 2 SSGSSGSGE-RPYGCN--ECGKNFGRHSHLIEHLKRH 35
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 34.9 bits (81), Expect = 0.002
Identities = 12/37 (32%), Positives = 13/37 (35%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPF 252
G Y C QC F L H+R HT P
Sbjct: 4 GSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 34.9 bits (81), Expect = 0.002
Identities = 12/37 (32%), Positives = 13/37 (35%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPF 383
G Y C QC F L H+R HT P
Sbjct: 4 GSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 27.1 bits (61), Expect = 1.1
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSY 224
Y C CG F+ K L H R+HTGS
Sbjct: 12 YRCDQCGKAFSQKGSLIVH-IRVHTGSGPS 40
Score = 27.1 bits (61), Expect = 1.1
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSY 355
Y C CG F+ K L H R+HTGS
Sbjct: 12 YRCDQCGKAFSQKGSLIVH-IRVHTGSGPS 40
Score = 27.1 bits (61), Expect = 1.2
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 242 HVRQHTDERPFPCPVCQRTFRRKG 265
E+P+ C C + F +KG
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKG 25
Score = 26.4 bits (59), Expect = 2.4
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 373 HVRQHTDERPFPCPVCQRTFRRK 395
E+P+ C C + F +K
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQK 24
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.002
Identities = 13/39 (33%), Positives = 14/39 (35%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG Y C C F L H R HT E+P
Sbjct: 5 SSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 0.002
Identities = 13/39 (33%), Positives = 14/39 (35%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG Y C C F L H R HT E+P
Sbjct: 5 SSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.038
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
Y C +C F LT H R+HTG +
Sbjct: 13 YKCDVCHKSFRYGSSLTVH-QRIHTGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.038
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
Y C +C F LT H R+HTG +
Sbjct: 13 YKCDVCHKSFRYGSSLTVH-QRIHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.23
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 241 QHVRQHTDERPFPCPVCQRTFRRK 264
T E+P+ C VC ++FR
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRYG 25
Score = 29.0 bits (66), Expect = 0.23
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 372 QHVRQHTDERPFPCPVCQRTFRRK 395
T E+P+ C VC ++FR
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRYG 25
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 35.2 bits (82), Expect = 0.002
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG Y C +C F +L QH + HT E+P
Sbjct: 5 SSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 0.002
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG Y C +C F +L QH + HT E+P
Sbjct: 5 SSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 31.7 bits (73), Expect = 0.033
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 185 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
S+ + Y C+ CG +F+ +L+QH ++HTG +
Sbjct: 1 GSSGSSGTGEKRYKCNECGKVFSRNSQLSQH-QKIHTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.033
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 316 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
S+ + Y C+ CG +F+ +L+QH ++HTG +
Sbjct: 1 GSSGSSGTGEKRYKCNECGKVFSRNSQLSQH-QKIHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.16
Identities = 11/62 (17%), Positives = 17/62 (27%), Gaps = 18/62 (29%)
Query: 241 QHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVC 300
T E+ + C C + F R +L H H G E+
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNS-----------------QLSQHQKIHTG-EKPSGP 43
Query: 301 NH 302
+
Sbjct: 44 SS 45
Score = 28.6 bits (65), Expect = 0.38
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 372 QHVRQHTDERPFPCPVCQRTFRRK 395
T E+ + C C + F R
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRN 25
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.002
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG + C +C + L QH R HT E+P
Sbjct: 5 SSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 0.002
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG + C +C + L QH R HT E+P
Sbjct: 5 SSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.039
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 185 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
S+ + + C CG + + LTQH R+HTG +
Sbjct: 1 GSSGSSGTGEKPFKCGECGKSYNQRVHLTQH-QRVHTGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.039
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 316 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
S+ + + C CG + + LTQH R+HTG +
Sbjct: 1 GSSGSSGTGEKPFKCGECGKSYNQRVHLTQH-QRVHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.24
Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 18/61 (29%)
Query: 242 HVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVCN 301
T E+PF C C +++ ++ L H H G E+ +
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRV-----------------HLTQHQRVHTG-EKPSGPS 44
Query: 302 H 302
Sbjct: 45 S 45
Score = 28.3 bits (64), Expect = 0.55
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 373 HVRQHTDERPFPCPVCQRTFRRK 395
T E+PF C C +++ ++
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQR 25
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 34.8 bits (81), Expect = 0.002
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG + C +C F L H + HT E+P
Sbjct: 5 SSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.002
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG + C +C F L H + HT E+P
Sbjct: 5 SSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.067
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 185 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
S+ + + C CG F+ + L H +LHTG +
Sbjct: 1 GSSGSSGTGEKPFKCVECGKGFSRRSALNVH-HKLHTGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.067
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 316 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
S+ + + C CG F+ + L H +LHTG +
Sbjct: 1 GSSGSSGTGEKPFKCVECGKGFSRRSALNVH-HKLHTGEKPSGPS 44
Score = 26.7 bits (60), Expect = 2.0
Identities = 13/62 (20%), Positives = 18/62 (29%), Gaps = 18/62 (29%)
Query: 241 QHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVC 300
T E+PF C C + F R+ L H H G E+
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRS-----------------ALNVHHKLHTG-EKPSGP 43
Query: 301 NH 302
+
Sbjct: 44 SS 45
Score = 26.3 bits (59), Expect = 2.4
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 372 QHVRQHTDERPFPCPVCQRTFRRK 395
T E+PF C C + F R+
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRR 25
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 34.8 bits (81), Expect = 0.002
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG + C +C F + +L H R HT E+P
Sbjct: 5 SSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.002
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG + C +C F + +L H R HT E+P
Sbjct: 5 SSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.094
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 186 RHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
S+ + + C CG F+ +L H R+HTG +
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATH-QRIHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.094
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 317 RHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
S+ + + C CG F+ +L H R+HTG +
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATH-QRIHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 1.0
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 242 HVRQHTDERPFPCPVCQRTFRRK 264
T E+PF C C ++F
Sbjct: 3 SGSSGTGEKPFECAECGKSFSIS 25
Score = 27.5 bits (62), Expect = 1.0
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 373 HVRQHTDERPFPCPVCQRTFRRK 395
T E+PF C C ++F
Sbjct: 3 SGSSGTGEKPFECAECGKSFSIS 25
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.002
Identities = 12/39 (30%), Positives = 14/39 (35%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG Y C QC F L H HT ++P
Sbjct: 5 SSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 34.8 bits (81), Expect = 0.002
Identities = 12/39 (30%), Positives = 14/39 (35%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG Y C QC F L H HT ++P
Sbjct: 5 SSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 31.7 bits (73), Expect = 0.027
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 185 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
S+ + Y C+ CG F+ + LT H +HTG +
Sbjct: 1 GSSGSSGTGEKPYECNQCGKAFSVRSSLTTH-QAIHTGKKPSGPS 44
Score = 31.7 bits (73), Expect = 0.027
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 316 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
S+ + Y C+ CG F+ + LT H +HTG +
Sbjct: 1 GSSGSSGTGEKPYECNQCGKAFSVRSSLTTH-QAIHTGKKPSGPS 44
Score = 29.4 bits (67), Expect = 0.20
Identities = 10/62 (16%), Positives = 19/62 (30%), Gaps = 18/62 (29%)
Query: 241 QHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVC 300
T E+P+ C C + F + L +H + H G ++
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRS-----------------SLTTHQAIHTG-KKPSGP 43
Query: 301 NH 302
+
Sbjct: 44 SS 45
Score = 27.1 bits (61), Expect = 1.1
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 372 QHVRQHTDERPFPCPVCQRTFRRK 395
T E+P+ C C + F +
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVR 25
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.002
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG + C +C F + L QH R HT E+P
Sbjct: 5 SSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.002
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG + C +C F + L QH R HT E+P
Sbjct: 5 SSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 31.7 bits (73), Expect = 0.031
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 185 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
S+ + + C+ CG F L QH R+HTG +
Sbjct: 1 GSSGSSGTGERPHKCNECGKSFIQSAHLIQH-QRIHTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.031
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 316 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
S+ + + C+ CG F L QH R+HTG +
Sbjct: 1 GSSGSSGTGERPHKCNECGKSFIQSAHLIQH-QRIHTGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.38
Identities = 13/62 (20%), Positives = 18/62 (29%), Gaps = 18/62 (29%)
Query: 241 QHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVC 300
T ERP C C ++F + LI H H G E+
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSA-----------------HLIQHQRIHTG-EKPSGP 43
Query: 301 NH 302
+
Sbjct: 44 SS 45
Score = 27.1 bits (61), Expect = 1.2
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 372 QHVRQHTDERPFPCPVCQRTFRRK 395
T ERP C C ++F +
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQS 25
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 34.8 bits (81), Expect = 0.002
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 218 HTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPF 252
G YPC C +F L+ H+R HT P
Sbjct: 6 SGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 34.8 bits (81), Expect = 0.002
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 349 HTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPF 383
G YPC C +F L+ H+R HT P
Sbjct: 6 SGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 29.8 bits (68), Expect = 0.13
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 242 HVRQHTDERPFPCPVCQRTFRRKG 265
E+P+PC +C FR
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQ 25
Score = 29.0 bits (66), Expect = 0.27
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 373 HVRQHTDERPFPCPVCQRTFRRK 395
E+P+PC +C FR
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHL 24
Score = 27.1 bits (61), Expect = 1.2
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTG 220
Y C +CG F + L HL R+HTG
Sbjct: 12 YPCEICGTRFRHLQTLKSHL-RIHTG 36
Score = 27.1 bits (61), Expect = 1.2
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTG 351
Y C +CG F + L HL R+HTG
Sbjct: 12 YPCEICGTRFRHLQTLKSHL-RIHTG 36
Score = 25.5 bits (57), Expect = 4.1
Identities = 12/37 (32%), Positives = 14/37 (37%), Gaps = 3/37 (8%)
Query: 155 SHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTH 191
S GGE + Y C C RF L H+ H
Sbjct: 1 GSSGSSGGE-KPYPCE--ICGTRFRHLQTLKSHLRIH 34
Score = 25.5 bits (57), Expect = 4.1
Identities = 12/37 (32%), Positives = 14/37 (37%), Gaps = 3/37 (8%)
Query: 286 SHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTH 322
S GGE + Y C C RF L H+ H
Sbjct: 1 GSSGSSGGE-KPYPCE--ICGTRFRHLQTLKSHLRIH 34
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.002
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG Y C+ C F +L H + HT E+P
Sbjct: 5 SSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.002
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG Y C+ C F +L H + HT E+P
Sbjct: 5 SSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 31.4 bits (72), Expect = 0.038
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 185 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
S+ + Y C +CG FT K +L H ++HTG +
Sbjct: 1 GSSGSSGTGEKPYECSICGKSFTKKSQLHVH-QQIHTGEKPSGPS 44
Score = 31.4 bits (72), Expect = 0.038
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 316 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
S+ + Y C +CG FT K +L H ++HTG +
Sbjct: 1 GSSGSSGTGEKPYECSICGKSFTKKSQLHVH-QQIHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.10
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 18/62 (29%)
Query: 241 QHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVC 300
T E+P+ C +C ++F +K +L H H G E+
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKS-----------------QLHVHQQIHTG-EKPSGP 43
Query: 301 NH 302
+
Sbjct: 44 SS 45
Score = 27.9 bits (63), Expect = 0.64
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 372 QHVRQHTDERPFPCPVCQRTFRRK 395
T E+P+ C +C ++F +K
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKK 25
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.002
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG + C +C F +L H R HT E P
Sbjct: 5 SSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 34.8 bits (81), Expect = 0.002
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG + C +C F +L H R HT E P
Sbjct: 5 SSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 30.6 bits (70), Expect = 0.076
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
+ C CG F+ +L H R+HTG +
Sbjct: 13 HECRECGKSFSFNSQLIVH-QRIHTGENPSGPS 44
Score = 30.6 bits (70), Expect = 0.076
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
+ C CG F+ +L H R+HTG +
Sbjct: 13 HECRECGKSFSFNSQLIVH-QRIHTGENPSGPS 44
Score = 28.3 bits (64), Expect = 0.54
Identities = 12/61 (19%), Positives = 17/61 (27%), Gaps = 18/61 (29%)
Query: 242 HVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVCN 301
T E+P C C ++F +LI H H G E +
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNS-----------------QLIVHQRIHTG-ENPSGPS 44
Query: 302 H 302
Sbjct: 45 S 45
Score = 26.0 bits (58), Expect = 2.9
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 373 HVRQHTDERPFPCPVCQRTFRRK 395
T E+P C C ++F
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFN 25
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.002
Identities = 12/39 (30%), Positives = 14/39 (35%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG Y C +C F L H R HT +P
Sbjct: 5 SSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 34.8 bits (81), Expect = 0.002
Identities = 12/39 (30%), Positives = 14/39 (35%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG Y C +C F L H R HT +P
Sbjct: 5 SSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 29.0 bits (66), Expect = 0.27
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
Y C+ CG +FT L H R+HTG +
Sbjct: 13 YKCNECGKVFTQNSHLANH-QRIHTGVKPSGPS 44
Score = 29.0 bits (66), Expect = 0.27
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
Y C+ CG +FT L H R+HTG +
Sbjct: 13 YKCNECGKVFTQNSHLANH-QRIHTGVKPSGPS 44
Score = 26.3 bits (59), Expect = 2.7
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 242 HVRQHTDERPFPCPVCQRTFRRK 264
T E+P+ C C + F +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQN 25
Score = 26.3 bits (59), Expect = 2.7
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 373 HVRQHTDERPFPCPVCQRTFRRK 395
T E+P+ C C + F +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQN 25
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 34.8 bits (81), Expect = 0.003
Identities = 14/39 (35%), Positives = 16/39 (41%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG Y C +C F L QH R HT E+P
Sbjct: 5 SSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.003
Identities = 14/39 (35%), Positives = 16/39 (41%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG Y C +C F L QH R HT E+P
Sbjct: 5 SSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 30.9 bits (71), Expect = 0.062
Identities = 12/62 (19%), Positives = 18/62 (29%), Gaps = 18/62 (29%)
Query: 241 QHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVC 300
T E+P+ C C + F + LI H H G E+
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTT-----------------HLIQHQRVHTG-EKPSGP 43
Query: 301 NH 302
+
Sbjct: 44 SS 45
Score = 30.6 bits (70), Expect = 0.066
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 185 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
S+ + Y C CG F+ L QH R+HTG +
Sbjct: 1 GSSGSSGTGEKPYECKECGKAFSQTTHLIQH-QRVHTGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.066
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 316 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
S+ + Y C CG F+ L QH R+HTG +
Sbjct: 1 GSSGSSGTGEKPYECKECGKAFSQTTHLIQH-QRVHTGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.65
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 372 QHVRQHTDERPFPCPVCQRTFRRK 395
T E+P+ C C + F +
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQT 25
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.003
Identities = 13/39 (33%), Positives = 15/39 (38%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG Y C C F + L QH+R HT E
Sbjct: 5 SSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 34.8 bits (81), Expect = 0.003
Identities = 13/39 (33%), Positives = 15/39 (38%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG Y C C F + L QH+R HT E
Sbjct: 5 SSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 31.3 bits (72), Expect = 0.045
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 185 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
S+ + Y+C++CG F L QHL R+HT +
Sbjct: 1 GSSGSSGTGEKPYSCNVCGKAFVLSAHLNQHL-RVHTQETLSGPS 44
Score = 31.3 bits (72), Expect = 0.045
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 316 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
S+ + Y+C++CG F L QHL R+HT +
Sbjct: 1 GSSGSSGTGEKPYSCNVCGKAFVLSAHLNQHL-RVHTQETLSGPS 44
Score = 30.2 bits (69), Expect = 0.11
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 241 QHVRQHTDERPFPCPVCQRTFRRK 264
T E+P+ C VC + F
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLS 25
Score = 30.2 bits (69), Expect = 0.11
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 372 QHVRQHTDERPFPCPVCQRTFRRK 395
T E+P+ C VC + F
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLS 25
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 0.003
Identities = 10/39 (25%), Positives = 15/39 (38%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
+G Y C +C + +L H R HT E+
Sbjct: 5 SSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 34.4 bits (80), Expect = 0.003
Identities = 10/39 (25%), Positives = 15/39 (38%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
+G Y C +C + +L H R HT E+
Sbjct: 5 SSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 29.8 bits (68), Expect = 0.14
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
Y C CG + + L H R+HTG +
Sbjct: 13 YKCVECGKGYKRRLDLDFH-QRVHTGEKLSGPS 44
Score = 29.8 bits (68), Expect = 0.14
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
Y C CG + + L H R+HTG +
Sbjct: 13 YKCVECGKGYKRRLDLDFH-QRVHTGEKLSGPS 44
Score = 27.5 bits (62), Expect = 0.82
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 18/60 (30%)
Query: 242 HVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVCN 301
+ E+P+ C C + ++R+ +L H H G E+ +
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRL-----------------DLDFHQRVHTG-EKLSGPS 44
Score = 27.5 bits (62), Expect = 0.98
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 373 HVRQHTDERPFPCPVCQRTFRRK 395
+ E+P+ C C + ++R+
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRR 25
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 0.003
Identities = 14/39 (35%), Positives = 16/39 (41%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG Y C +C F L QH R HT E+P
Sbjct: 5 SSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.003
Identities = 14/39 (35%), Positives = 16/39 (41%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG Y C +C F L QH R HT E+P
Sbjct: 5 SSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 31.7 bits (73), Expect = 0.032
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 185 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
S+ + Y C CG F K LTQH R+HTG +
Sbjct: 1 GSSGSSGTGEKPYRCGECGKAFAQKANLTQH-QRIHTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.032
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 316 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
S+ + Y C CG F K LTQH R+HTG +
Sbjct: 1 GSSGSSGTGEKPYRCGECGKAFAQKANLTQH-QRIHTGEKPSGPS 44
Score = 30.9 bits (71), Expect = 0.055
Identities = 12/62 (19%), Positives = 18/62 (29%), Gaps = 18/62 (29%)
Query: 241 QHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVC 300
T E+P+ C C + F +K L H H G E+
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKA-----------------NLTQHQRIHTG-EKPSGP 43
Query: 301 NH 302
+
Sbjct: 44 SS 45
Score = 29.0 bits (66), Expect = 0.27
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 372 QHVRQHTDERPFPCPVCQRTFRRK 395
T E+P+ C C + F +K
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQK 25
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 0.003
Identities = 13/39 (33%), Positives = 15/39 (38%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG Y C+ C F LR H + HT ER
Sbjct: 5 SSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 34.4 bits (80), Expect = 0.003
Identities = 13/39 (33%), Positives = 15/39 (38%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG Y C+ C F LR H + HT ER
Sbjct: 5 SSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 31.0 bits (71), Expect = 0.059
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
Y C CG FT K RL H + HTG +
Sbjct: 13 YKCSDCGKSFTWKSRLRIH-QKCHTGERHSGPS 44
Score = 31.0 bits (71), Expect = 0.059
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
Y C CG FT K RL H + HTG +
Sbjct: 13 YKCSDCGKSFTWKSRLRIH-QKCHTGERHSGPS 44
Score = 27.1 bits (61), Expect = 1.1
Identities = 13/60 (21%), Positives = 18/60 (30%), Gaps = 18/60 (30%)
Query: 242 HVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVCN 301
T E+P+ C C ++F K L H H G ER +
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKS-----------------RLRIHQKCHTG-ERHSGPS 44
Score = 26.3 bits (59), Expect = 2.3
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 373 HVRQHTDERPFPCPVCQRTFRRK 395
T E+P+ C C ++F K
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWK 25
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 0.003
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG Y C +C F L +H + HT ++P
Sbjct: 5 SSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 34.4 bits (80), Expect = 0.003
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG Y C +C F L +H + HT ++P
Sbjct: 5 SSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 30.2 bits (69), Expect = 0.093
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
Y C CG FT + L +H ++HT +
Sbjct: 13 YICAECGKAFTIRSNLIKH-QKIHTKQKPSGPS 44
Score = 30.2 bits (69), Expect = 0.093
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
Y C CG FT + L +H ++HT +
Sbjct: 13 YICAECGKAFTIRSNLIKH-QKIHTKQKPSGPS 44
Score = 28.6 bits (65), Expect = 0.36
Identities = 10/61 (16%), Positives = 17/61 (27%), Gaps = 18/61 (29%)
Query: 242 HVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVCN 301
T E+P+ C C + F + LI H H ++ +
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRS-----------------NLIKHQKIHTK-QKPSGPS 44
Query: 302 H 302
Sbjct: 45 S 45
Score = 26.3 bits (59), Expect = 2.3
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 373 HVRQHTDERPFPCPVCQRTFRRK 395
T E+P+ C C + F +
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIR 25
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 0.003
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
+G + C +C +F L H R HT E+P
Sbjct: 5 SSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.003
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
+G + C +C +F L H R HT E+P
Sbjct: 5 SSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.16
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 185 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
S+ + + + C CG FT L H R+HTG +
Sbjct: 1 GSSGSSGSGEKPFQCEECGKRFTQNSHLHSH-QRVHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.16
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 316 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
S+ + + + C CG FT L H R+HTG +
Sbjct: 1 GSSGSSGSGEKPFQCEECGKRFTQNSHLHSH-QRVHTGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.61
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 241 QHVRQHTDERPFPCPVCQRTFRRK 264
+ E+PF C C + F +
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQN 25
Score = 27.9 bits (63), Expect = 0.61
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 372 QHVRQHTDERPFPCPVCQRTFRRK 395
+ E+PF C C + F +
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQN 25
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 34.4 bits (80), Expect = 0.003
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 218 HTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
+G + C+ C F S L H + H +E+P
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 34.4 bits (80), Expect = 0.003
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 349 HTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
+G + C+ C F S L H + H +E+P
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 29.4 bits (67), Expect = 0.20
Identities = 7/33 (21%), Positives = 11/33 (33%), Gaps = 1/33 (3%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
+ C C F+ K L H + H +
Sbjct: 11 FGCSCCEKAFSSKSYLLVH-QQTHAEEKPSGPS 42
Score = 29.4 bits (67), Expect = 0.20
Identities = 7/33 (21%), Positives = 11/33 (33%), Gaps = 1/33 (3%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
+ C C F+ K L H + H +
Sbjct: 11 FGCSCCEKAFSSKSYLLVH-QQTHAEEKPSGPS 42
Score = 26.3 bits (59), Expect = 2.3
Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 18/56 (32%)
Query: 246 HTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVCN 301
+ E+PF C C++ F K L+ H H E+ +
Sbjct: 5 SSGEKPFGCSCCEKAFSSKS-----------------YLLVHQQTHAE-EKPSGPS 42
Score = 26.0 bits (58), Expect = 3.1
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 377 HTDERPFPCPVCQRTFRRK 395
+ E+PF C C++ F K
Sbjct: 5 SSGEKPFGCSCCEKAFSSK 23
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 0.003
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG Y C +C F L +H R HT E+P
Sbjct: 5 SSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.003
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG Y C +C F L +H R HT E+P
Sbjct: 5 SSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.080
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 185 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
S+ + Y C+ CG F K L +H R+HTG +
Sbjct: 1 GSSGSSGTGEKPYICNECGKSFIQKSHLNRH-RRIHTGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.080
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 316 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
S+ + Y C+ CG F K L +H R+HTG +
Sbjct: 1 GSSGSSGTGEKPYICNECGKSFIQKSHLNRH-RRIHTGEKPSGPS 44
Score = 27.1 bits (61), Expect = 1.1
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 241 QHVRQHTDERPFPCPVCQRTFRRK 264
T E+P+ C C ++F +K
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQK 25
Score = 27.1 bits (61), Expect = 1.1
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 372 QHVRQHTDERPFPCPVCQRTFRRK 395
T E+P+ C C ++F +K
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQK 25
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.1 bits (90), Expect = 0.003
Identities = 25/191 (13%), Positives = 54/191 (28%), Gaps = 43/191 (22%)
Query: 12 LMLMIMTRY---SLPCVDFIQVHLRLHSGERRFPCEYCSLLVYPVLILFRFIFVCTQGSA 68
LM I T S+ +I+ RL++ + F Y V S
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA-------KYNV-------------SR 133
Query: 69 DSHKHHLKDHVNKIHLHPKTFSC--NSCGQTWLGYTSWKQHVAACREKRRKETFPCK--- 123
L+ + ++ G+TW+ + C + + K
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA-------LDVCLSYKVQCKMDFKIFW 186
Query: 124 ----RCDERFSTRDGLESF-TFSLRLFCLYFPQELISHSSYHGGEERRYVCNHMQCTRRF 178
C+ S LE ++ + + S + + + ++ +
Sbjct: 187 LNLKNCN---SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 179 HSASLLARHVS 189
+ L+ +V
Sbjct: 244 ENCLLVLLNVQ 254
Score = 32.1 bits (72), Expect = 0.38
Identities = 16/79 (20%), Positives = 24/79 (30%), Gaps = 25/79 (31%)
Query: 71 HKHHLKDHV---NKIHLH---------PKTFSCNSCGQTW--------LGYTSWKQHVAA 110
+L+ V N+ LH PKTF + + +G+ H+
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH-----HLKN 483
Query: 111 CREKRRKETFPCKRCDERF 129
R F D RF
Sbjct: 484 IEHPERMTLFRMVFLDFRF 502
Score = 31.7 bits (71), Expect = 0.58
Identities = 44/304 (14%), Positives = 75/304 (24%), Gaps = 72/304 (23%)
Query: 5 HIGPSVILMLMIMTRYSLPCVDFIQVHLRLHSGERRFPCEYCSLLVY------------- 51
I P+ + L IQ LR + + LLV
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHS-IQAELRRLLKSKPYEN---CLLVLLNVQNAKAWNAFN 263
Query: 52 ---PVLILFRFIFVCTQGSADSHKHHLKDHVNKIHLHPKT---FSCNSCGQTWLGYTSWK 105
+L+ RF V SA + H DH + + +L
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL------KYLDCRPQD 317
Query: 106 QHVAACR---------------EKRRKETFPCKRCDERFSTRD-GLESFTFSL--RLF-- 145
+ + CD+ + + L + ++F
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 146 CLYFPQEL-ISH---SSYHGGEERRYVCNHMQCTRRFHSASLLARH-----VSTHAIQ-- 194
FP I S + V M + H SL+ + +S +I
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDV---MVVVNKLHKYSLVEKQPKESTISIPSIYLE 434
Query: 195 YTCHMCGHMFTCKRRLTQH---LARLHTGSLSYPCTQCPGKFYS--AYELRQHVRQHTDE 249
+ + R + H + L P FYS + L+ +
Sbjct: 435 LKVK-LENEYALHRSIVDHYNIPKTFDSDDLIPPYLD--QYFYSHIGHHLKN-IEHPERM 490
Query: 250 RPFP 253
F
Sbjct: 491 TLFR 494
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 0.003
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG Y CT C F L +H + HT E+P
Sbjct: 5 SSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.003
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG Y CT C F L +H + HT E+P
Sbjct: 5 SSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 30.9 bits (71), Expect = 0.052
Identities = 14/62 (22%), Positives = 19/62 (30%), Gaps = 18/62 (29%)
Query: 241 QHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVC 300
T ERP+ C VC + F + LI H H G E+
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRS-----------------NLIKHQKIHTG-EKPSGP 43
Query: 301 NH 302
+
Sbjct: 44 SS 45
Score = 29.8 bits (68), Expect = 0.14
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPC 226
Y C +CG FT + L +H ++HTG
Sbjct: 13 YICTVCGKAFTDRSNLIKH-QKIHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.14
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPC 357
Y C +CG FT + L +H ++HTG
Sbjct: 13 YICTVCGKAFTDRSNLIKH-QKIHTGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.32
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 372 QHVRQHTDERPFPCPVCQRTFRRK 395
T ERP+ C VC + F +
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDR 25
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 0.003
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG Y C +C F L +H R HT E+P
Sbjct: 5 SSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.003
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG Y C +C F L +H R HT E+P
Sbjct: 5 SSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.15
Identities = 12/62 (19%), Positives = 17/62 (27%), Gaps = 18/62 (29%)
Query: 241 QHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVC 300
T E+P+ C C + FR L H H G E+
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNS-----------------YLSRHQRIHTG-EKPSGP 43
Query: 301 NH 302
+
Sbjct: 44 SS 45
Score = 29.4 bits (67), Expect = 0.19
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 372 QHVRQHTDERPFPCPVCQRTFRRK 395
T E+P+ C C + FR
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHN 25
Score = 29.4 bits (67), Expect = 0.21
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
Y C+ CG +F L++H R+HTG +
Sbjct: 13 YKCNECGKVFRHNSYLSRH-QRIHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.21
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
Y C+ CG +F L++H R+HTG +
Sbjct: 13 YKCNECGKVFRHNSYLSRH-QRIHTGEKPSGPS 44
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 0.003
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG Y C +C F +L +H R HT E+P
Sbjct: 5 SSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.003
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG Y C +C F +L +H R HT E+P
Sbjct: 5 SSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.26
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
Y C+ CG F+ +L +H R+HTG +
Sbjct: 13 YKCNECGKAFSQTSKLARH-QRIHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.26
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
Y C+ CG F+ +L +H R+HTG +
Sbjct: 13 YKCNECGKAFSQTSKLARH-QRIHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 1.00
Identities = 11/61 (18%), Positives = 18/61 (29%), Gaps = 18/61 (29%)
Query: 242 HVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVCN 301
T E+P+ C C + F + +L H H G E+ +
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTS-----------------KLARHQRIHTG-EKPSGPS 44
Query: 302 H 302
Sbjct: 45 S 45
Score = 25.6 bits (57), Expect = 5.0
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 373 HVRQHTDERPFPCPVCQRTFRRK 395
T E+P+ C C + F +
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQT 25
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 0.003
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
+G Y C C F + EL +H R HT E+P
Sbjct: 5 SSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.003
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
+G Y C C F + EL +H R HT E+P
Sbjct: 5 SSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.024
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQ 228
Y C CG F L +H R+HTG +
Sbjct: 13 YVCDYCGKAFGLSAELVRH-QRIHTGEKPSGPSS 45
Score = 32.1 bits (74), Expect = 0.024
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQ 359
Y C CG F L +H R+HTG +
Sbjct: 13 YVCDYCGKAFGLSAELVRH-QRIHTGEKPSGPSS 45
Score = 29.8 bits (68), Expect = 0.15
Identities = 11/62 (17%), Positives = 18/62 (29%), Gaps = 18/62 (29%)
Query: 241 QHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVC 300
+ E+P+ C C + F EL+ H H G E+
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSA-----------------ELVRHQRIHTG-EKPSGP 43
Query: 301 NH 302
+
Sbjct: 44 SS 45
Score = 28.2 bits (64), Expect = 0.49
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 372 QHVRQHTDERPFPCPVCQRTFRRK 395
+ E+P+ C C + F
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLS 25
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 0.004
Identities = 13/39 (33%), Positives = 15/39 (38%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG Y C C F + L QH H+ ERP
Sbjct: 5 SSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 34.4 bits (80), Expect = 0.004
Identities = 13/39 (33%), Positives = 15/39 (38%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG Y C C F + L QH H+ ERP
Sbjct: 5 SSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 30.6 bits (70), Expect = 0.071
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 185 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
S+ + Y C +CG F L QH +H+G +
Sbjct: 1 GSSGSSGTGEKPYKCQVCGKAFRVSSHLVQH-HSVHSGERPSGPS 44
Score = 30.6 bits (70), Expect = 0.071
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 316 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
S+ + Y C +CG F L QH +H+G +
Sbjct: 1 GSSGSSGTGEKPYKCQVCGKAFRVSSHLVQH-HSVHSGERPSGPS 44
Score = 30.6 bits (70), Expect = 0.073
Identities = 15/61 (24%), Positives = 20/61 (32%), Gaps = 18/61 (29%)
Query: 241 QHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVC 300
T E+P+ C VC + FR L+ H S H G ER
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSS-----------------HLVQHHSVHSG-ERPSGP 43
Query: 301 N 301
+
Sbjct: 44 S 44
Score = 29.8 bits (68), Expect = 0.15
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 372 QHVRQHTDERPFPCPVCQRTFRRK 395
T E+P+ C VC + FR
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVS 25
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 0.004
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG Y C +C F + L H HT E+P
Sbjct: 5 SSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.004
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG Y C +C F + L H HT E+P
Sbjct: 5 SSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.12
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
Y C+ CG F LT H +HTG +
Sbjct: 13 YKCNECGKAFRAHSNLTTH-QVIHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.12
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
Y C+ CG F LT H +HTG +
Sbjct: 13 YKCNECGKAFRAHSNLTTH-QVIHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.20
Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 18/61 (29%)
Query: 241 QHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVC 300
T E+P+ C C + FR L +H H G E+
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHS-----------------NLTTHQVIHTG-EKPSGP 43
Query: 301 N 301
+
Sbjct: 44 S 44
Score = 29.0 bits (66), Expect = 0.26
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 372 QHVRQHTDERPFPCPVCQRTFRRK 395
T E+P+ C C + FR
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAH 25
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 0.004
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG + C++C F L H + HT ERP
Sbjct: 5 SSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 34.0 bits (79), Expect = 0.004
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG + C++C F L H + HT ERP
Sbjct: 5 SSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 29.8 bits (68), Expect = 0.13
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
+ C CG +FT K L H ++HTG +
Sbjct: 13 FICSECGKVFTHKTNLIIH-QKIHTGERPSGPS 44
Score = 29.8 bits (68), Expect = 0.13
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
+ C CG +FT K L H ++HTG +
Sbjct: 13 FICSECGKVFTHKTNLIIH-QKIHTGERPSGPS 44
Score = 29.0 bits (66), Expect = 0.26
Identities = 15/60 (25%), Positives = 17/60 (28%), Gaps = 18/60 (30%)
Query: 242 HVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVCN 301
T E PF C C + F K LI H H G ER +
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKT-----------------NLIIHQKIHTG-ERPSGPS 44
Score = 27.8 bits (63), Expect = 0.61
Identities = 8/23 (34%), Positives = 9/23 (39%)
Query: 373 HVRQHTDERPFPCPVCQRTFRRK 395
T E PF C C + F K
Sbjct: 3 SGSSGTGENPFICSECGKVFTHK 25
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 0.004
Identities = 11/39 (28%), Positives = 14/39 (35%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG + C C F L +H HT E+P
Sbjct: 5 SSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 34.0 bits (79), Expect = 0.004
Identities = 11/39 (28%), Positives = 14/39 (35%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG + C C F L +H HT E+P
Sbjct: 5 SSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 29.0 bits (66), Expect = 0.27
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
+ C +CG F + RL +H + +HT +
Sbjct: 13 FKCDICGKSFCGRSRLNRH-SMVHTAEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.27
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
+ C +CG F + RL +H + +HT +
Sbjct: 13 FKCDICGKSFCGRSRLNRH-SMVHTAEKPSGPS 44
Score = 27.8 bits (63), Expect = 0.62
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 242 HVRQHTDERPFPCPVCQRTFRRK 264
T E+PF C +C ++F +
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGR 25
Score = 27.8 bits (63), Expect = 0.62
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 373 HVRQHTDERPFPCPVCQRTFRRK 395
T E+PF C +C ++F +
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGR 25
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 0.004
Identities = 12/39 (30%), Positives = 14/39 (35%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG Y C +C F L H HT E+P
Sbjct: 5 SSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.004
Identities = 12/39 (30%), Positives = 14/39 (35%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG Y C +C F L H HT E+P
Sbjct: 5 SSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.037
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 185 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPC 226
S+ Y C+ CG F+ LT H +HTG
Sbjct: 1 GSSGSSGTGVKPYMCNECGKAFSVYSSLTTH-QVIHTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.037
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 316 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPC 357
S+ Y C+ CG F+ LT H +HTG
Sbjct: 1 GSSGSSGTGVKPYMCNECGKAFSVYSSLTTH-QVIHTGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.35
Identities = 10/62 (16%), Positives = 16/62 (25%), Gaps = 18/62 (29%)
Query: 241 QHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVC 300
T +P+ C C + F L +H H G E+
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYS-----------------SLTTHQVIHTG-EKPSGP 43
Query: 301 NH 302
+
Sbjct: 44 SS 45
Score = 26.7 bits (60), Expect = 2.0
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 372 QHVRQHTDERPFPCPVCQRTFRRK 395
T +P+ C C + F
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVY 25
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 0.004
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
+G + C +C F L H+R HT E+P
Sbjct: 5 SSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.004
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
+G + C +C F L H+R HT E+P
Sbjct: 5 SSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 30.5 bits (70), Expect = 0.074
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 185 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
S+ + + + C CG F L HL R+HTG +
Sbjct: 1 GSSGSSGSGEKPFKCKECGKAFRQNIHLASHL-RIHTGEKPSGPS 44
Score = 30.5 bits (70), Expect = 0.074
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 316 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
S+ + + + C CG F L HL R+HTG +
Sbjct: 1 GSSGSSGSGEKPFKCKECGKAFRQNIHLASHL-RIHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 0.98
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 241 QHVRQHTDERPFPCPVCQRTFRRK 264
+ E+PF C C + FR+
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQN 25
Score = 27.5 bits (62), Expect = 0.98
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 372 QHVRQHTDERPFPCPVCQRTFRRK 395
+ E+PF C C + FR+
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQN 25
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 0.004
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
G + C +C F + L H R HT E+P
Sbjct: 5 SSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.004
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
G + C +C F + L H R HT E+P
Sbjct: 5 SSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.082
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
+ C+ C FT LT H R+HTG +
Sbjct: 13 FKCNECKKTFTQSSSLTVH-QRIHTGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.082
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
+ C+ C FT LT H R+HTG +
Sbjct: 13 FKCNECKKTFTQSSSLTVH-QRIHTGEKPSGPS 44
Score = 26.3 bits (59), Expect = 2.1
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 242 HVRQHTDERPFPCPVCQRTFRRK 264
++ F C C++TF +
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQS 25
Score = 26.3 bits (59), Expect = 2.1
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 373 HVRQHTDERPFPCPVCQRTFRRK 395
++ F C C++TF +
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQS 25
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 0.005
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
+G Y C++C F+ L +H R HT RP
Sbjct: 5 SSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 34.0 bits (79), Expect = 0.005
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
+G Y C++C F+ L +H R HT RP
Sbjct: 5 SSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 31.7 bits (73), Expect = 0.032
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 185 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQ 228
S+ + + Y C CG F L +H R+HTG +
Sbjct: 1 GSSGSSGSGEKPYKCSECGKAFHRHTHLNEH-RRIHTGYRPSGPSS 45
Score = 31.7 bits (73), Expect = 0.032
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 316 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQ 359
S+ + + Y C CG F L +H R+HTG +
Sbjct: 1 GSSGSSGSGEKPYKCSECGKAFHRHTHLNEH-RRIHTGYRPSGPSS 45
Score = 27.8 bits (63), Expect = 0.79
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 241 QHVRQHTDERPFPCPVCQRTFRRK 264
+ E+P+ C C + F R
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRH 25
Score = 27.8 bits (63), Expect = 0.79
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 372 QHVRQHTDERPFPCPVCQRTFRRK 395
+ E+P+ C C + F R
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRH 25
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 34.0 bits (79), Expect = 0.005
Identities = 9/39 (23%), Positives = 11/39 (28%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
+G Y C +C F L H R H
Sbjct: 5 SSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 34.0 bits (79), Expect = 0.005
Identities = 9/39 (23%), Positives = 11/39 (28%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
+G Y C +C F L H R H
Sbjct: 5 SSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 29.8 bits (68), Expect = 0.12
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 185 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPC 226
S+ + + Y C+ CG F K L H R H G
Sbjct: 1 GSSGSSGSGEKPYECNECGKAFIWKSLLIVH-ERTHAGVSGPSS 43
Score = 29.8 bits (68), Expect = 0.12
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 316 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPC 357
S+ + + Y C+ CG F K L H R H G
Sbjct: 1 GSSGSSGSGEKPYECNECGKAFIWKSLLIVH-ERTHAGVSGPSS 43
Score = 25.6 bits (57), Expect = 4.3
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 242 HVRQHTDERPFPCPVCQRTFRRK 264
+ E+P+ C C + F K
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWK 25
Score = 25.6 bits (57), Expect = 4.3
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 373 HVRQHTDERPFPCPVCQRTFRRK 395
+ E+P+ C C + F K
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWK 25
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 33.8 bits (78), Expect = 0.005
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 242 HVRQHTDERPFPCPVCQRTFRR 263
R T +PF CP C R+F R
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSR 23
Score = 33.8 bits (78), Expect = 0.005
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 373 HVRQHTDERPFPCPVCQRTFRR 394
R T +PF CP C R+F R
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSR 23
Score = 26.9 bits (60), Expect = 1.3
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQH 246
R TG + C C F + L H ++H
Sbjct: 4 RGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 26.9 bits (60), Expect = 1.3
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQH 377
R TG + C C F + L H ++H
Sbjct: 4 RGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 26.1 bits (58), Expect = 2.3
Identities = 5/17 (29%), Positives = 7/17 (41%)
Query: 31 HLRLHSGERRFPCEYCS 47
R +G + F C C
Sbjct: 2 STRGSTGIKPFQCPDCD 18
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 0.005
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG Y C +C F L +H R HT +P
Sbjct: 5 SSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 34.0 bits (79), Expect = 0.005
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG Y C +C F L +H R HT +P
Sbjct: 5 SSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 28.3 bits (64), Expect = 0.47
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
Y C+ CG +FT L +H R+HTG +
Sbjct: 13 YKCNECGKVFTQNSHLARH-RRVHTGGKPSGPS 44
Score = 28.3 bits (64), Expect = 0.47
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
Y C+ CG +FT L +H R+HTG +
Sbjct: 13 YKCNECGKVFTQNSHLARH-RRVHTGGKPSGPS 44
Score = 26.7 bits (60), Expect = 1.6
Identities = 10/61 (16%), Positives = 16/61 (26%), Gaps = 18/61 (29%)
Query: 242 HVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVCN 301
T E+P+ C C + F + L H H G + +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNS-----------------HLARHRRVHTG-GKPSGPS 44
Query: 302 H 302
Sbjct: 45 S 45
Score = 25.6 bits (57), Expect = 5.2
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 373 HVRQHTDERPFPCPVCQRTFRRK 395
T E+P+ C C + F +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQN 25
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 0.005
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
+G + C +C +F +L H R HT E+P
Sbjct: 5 SSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.005
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
+G + C +C +F +L H R HT E+P
Sbjct: 5 SSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.041
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 185 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQ 228
S+ + + + C CG FT +L H R+HTG +
Sbjct: 1 GSSGSSGSGEKPFKCEECGKRFTQNSQLHSH-QRVHTGEKPSGPSS 45
Score = 31.3 bits (72), Expect = 0.041
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 316 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQ 359
S+ + + + C CG FT +L H R+HTG +
Sbjct: 1 GSSGSSGSGEKPFKCEECGKRFTQNSQLHSH-QRVHTGEKPSGPSS 45
Score = 26.7 bits (60), Expect = 1.8
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 242 HVRQHTDERPFPCPVCQRTFRRK 264
+ E+PF C C + F +
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQN 25
Score = 26.7 bits (60), Expect = 1.8
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 373 HVRQHTDERPFPCPVCQRTFRRK 395
+ E+PF C C + F +
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQN 25
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 33.7 bits (78), Expect = 0.005
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
T S SY C +C F + L +H + HT +
Sbjct: 5 SSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 33.7 bits (78), Expect = 0.005
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
T S SY C +C F + L +H + HT +
Sbjct: 5 SSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 29.5 bits (67), Expect = 0.17
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 241 QHVRQHTDERPFPCPVCQRTFRRK 264
TD + + C C + F R
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRI 25
Score = 29.5 bits (67), Expect = 0.17
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 372 QHVRQHTDERPFPCPVCQRTFRRK 395
TD + + C C + F R
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRI 25
Score = 27.2 bits (61), Expect = 1.1
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 185 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPC 226
S+ Y C+ CG FT LT+H ++HT
Sbjct: 1 GSSGSSGTDSKSYNCNECGKAFTRIFHLTRHQ-KIHTRKSGPSS 43
Score = 27.2 bits (61), Expect = 1.1
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 316 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPC 357
S+ Y C+ CG FT LT+H ++HT
Sbjct: 1 GSSGSSGTDSKSYNCNECGKAFTRIFHLTRHQ-KIHTRKSGPSS 43
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 0.005
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
G Y C C +F + L+ H R HT E+P
Sbjct: 5 SSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.005
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
G Y C C +F + L+ H R HT E+P
Sbjct: 5 SSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.16
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
Y C +CG F+ L H R+HTG +
Sbjct: 13 YKCDVCGKEFSQSSHLQTH-QRVHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.16
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
Y C +CG F+ L H R+HTG +
Sbjct: 13 YKCDVCGKEFSQSSHLQTH-QRVHTGEKPSGPS 44
Score = 26.3 bits (59), Expect = 2.3
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 242 HVRQHTDERPFPCPVCQRTFRRK 264
E+ + C VC + F +
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQS 25
Score = 26.3 bits (59), Expect = 2.3
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 373 HVRQHTDERPFPCPVCQRTFRRK 395
E+ + C VC + F +
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQS 25
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.7 bits (78), Expect = 0.005
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
G Y C++C F +Y L QH HT E+P
Sbjct: 5 SSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 33.7 bits (78), Expect = 0.005
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
G Y C++C F +Y L QH HT E+P
Sbjct: 5 SSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 31.0 bits (71), Expect = 0.054
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 185 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
S+ + Y C CG F+ RLTQH HT +
Sbjct: 1 GSSGSSGEGEKPYQCSECGKSFSGSYRLTQH-WITHTREKPSGPS 44
Score = 31.0 bits (71), Expect = 0.054
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 316 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
S+ + Y C CG F+ RLTQH HT +
Sbjct: 1 GSSGSSGEGEKPYQCSECGKSFSGSYRLTQH-WITHTREKPSGPS 44
Score = 27.1 bits (61), Expect = 1.1
Identities = 9/61 (14%), Positives = 15/61 (24%), Gaps = 18/61 (29%)
Query: 241 QHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVC 300
E+P+ C C ++F L H H E+
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSY-----------------RLTQHWITHTR-EKPSGP 43
Query: 301 N 301
+
Sbjct: 44 S 44
Score = 26.7 bits (60), Expect = 1.8
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 372 QHVRQHTDERPFPCPVCQRTFRRK 395
E+P+ C C ++F
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGS 25
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.6 bits (78), Expect = 0.005
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG Y C +C F L +H HT E+P
Sbjct: 5 SSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.005
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG Y C +C F L +H HT E+P
Sbjct: 5 SSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 1.2
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
Y C+ CG +FT L +H +HTG +
Sbjct: 13 YKCNECGKVFTQNSHLARH-RGIHTGEKPSGPS 44
Score = 27.1 bits (61), Expect = 1.2
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
Y C+ CG +FT L +H +HTG +
Sbjct: 13 YKCNECGKVFTQNSHLARH-RGIHTGEKPSGPS 44
Score = 26.3 bits (59), Expect = 2.1
Identities = 10/61 (16%), Positives = 17/61 (27%), Gaps = 18/61 (29%)
Query: 242 HVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVCN 301
T ++P+ C C + F + L H H G E+ +
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNS-----------------HLARHRGIHTG-EKPSGPS 44
Query: 302 H 302
Sbjct: 45 S 45
Score = 25.2 bits (56), Expect = 5.6
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 373 HVRQHTDERPFPCPVCQRTFRRK 395
T ++P+ C C + F +
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQN 25
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.6 bits (78), Expect = 0.005
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG Y C +C F L H + HT E+P
Sbjct: 5 SSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.005
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG Y C +C F L H + HT E+P
Sbjct: 5 SSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.18
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 185 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPC 226
S+ + Y C CG FT + L H ++HTG
Sbjct: 1 GSSGSSGTGEKPYRCAECGKAFTDRSNLFTH-QKIHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.18
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 316 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPC 357
S+ + Y C CG FT + L H ++HTG
Sbjct: 1 GSSGSSGTGEKPYRCAECGKAFTDRSNLFTH-QKIHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 1.4
Identities = 11/62 (17%), Positives = 18/62 (29%), Gaps = 18/62 (29%)
Query: 241 QHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVC 300
T E+P+ C C + F + L +H H G E+
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRS-----------------NLFTHQKIHTG-EKPSGP 43
Query: 301 NH 302
+
Sbjct: 44 SS 45
Score = 26.3 bits (59), Expect = 2.2
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 372 QHVRQHTDERPFPCPVCQRTFRRK 395
T E+P+ C C + F +
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDR 25
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 33.6 bits (78), Expect = 0.005
Identities = 8/39 (20%), Positives = 11/39 (28%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
+ Y C C + L H R H E+
Sbjct: 5 SSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 33.6 bits (78), Expect = 0.005
Identities = 8/39 (20%), Positives = 11/39 (28%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
+ Y C C + L H R H E+
Sbjct: 5 SSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 29.8 bits (68), Expect = 0.16
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
Y C CG + + L H R+H G + +
Sbjct: 13 YKCEDCGKGYNRRLNLDMH-QRVHMGEKTSGPS 44
Score = 29.8 bits (68), Expect = 0.16
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
Y C CG + + L H R+H G + +
Sbjct: 13 YKCEDCGKGYNRRLNLDMH-QRVHMGEKTSGPS 44
Score = 29.0 bits (66), Expect = 0.23
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 241 QHVRQHTDERPFPCPVCQRTFRRK 264
+ E+P+ C C + + R+
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRR 25
Score = 29.0 bits (66), Expect = 0.23
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 372 QHVRQHTDERPFPCPVCQRTFRRK 395
+ E+P+ C C + + R+
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRR 25
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 33.6 bits (78), Expect = 0.005
Identities = 10/39 (25%), Positives = 14/39 (35%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
+G Y C++C F +L H R H E
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 33.6 bits (78), Expect = 0.005
Identities = 10/39 (25%), Positives = 14/39 (35%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
+G Y C++C F +L H R H E
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 29.8 bits (68), Expect = 0.14
Identities = 11/32 (34%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPC 226
Y C CG F K +L H R H G
Sbjct: 11 YECSECGKAFNRKDQLISH-QRTHAGESGPSS 41
Score = 29.8 bits (68), Expect = 0.14
Identities = 11/32 (34%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPC 357
Y C CG F K +L H R H G
Sbjct: 11 YECSECGKAFNRKDQLISH-QRTHAGESGPSS 41
Score = 24.4 bits (54), Expect = 9.5
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 244 RQHTDERPFPCPVCQRTFRRK 264
+ E P+ C C + F RK
Sbjct: 3 SGSSGENPYECSECGKAFNRK 23
Score = 24.4 bits (54), Expect = 9.5
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 375 RQHTDERPFPCPVCQRTFRRK 395
+ E P+ C C + F RK
Sbjct: 3 SGSSGENPYECSECGKAFNRK 23
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.7 bits (78), Expect = 0.005
Identities = 13/39 (33%), Positives = 15/39 (38%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
+G Y C +C F L QH R HT ER
Sbjct: 5 SSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 33.7 bits (78), Expect = 0.005
Identities = 13/39 (33%), Positives = 15/39 (38%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
+G Y C +C F L QH R HT ER
Sbjct: 5 SSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 31.7 bits (73), Expect = 0.026
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 185 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQ 228
S+ + + Y C C F L QH R+HTG S +
Sbjct: 1 GSSGSSGSGKKPYECKECRKTFIQIGHLNQHK-RVHTGERSSGPSS 45
Score = 31.7 bits (73), Expect = 0.026
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 316 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQ 359
S+ + + Y C C F L QH R+HTG S +
Sbjct: 1 GSSGSSGSGKKPYECKECRKTFIQIGHLNQHK-RVHTGERSSGPSS 45
Score = 28.3 bits (64), Expect = 0.51
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 18/60 (30%)
Query: 242 HVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVCN 301
+ ++P+ C C++TF + G L H H G ER +
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIG-----------------HLNQHKRVHTG-ERSSGPS 44
Score = 27.1 bits (61), Expect = 1.2
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 373 HVRQHTDERPFPCPVCQRTFRRK 395
+ ++P+ C C++TF +
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQI 25
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.6 bits (78), Expect = 0.006
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
+G Y C +C F L H R HT E+P
Sbjct: 5 SSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.006
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
+G Y C +C F L H R HT E+P
Sbjct: 5 SSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 30.5 bits (70), Expect = 0.073
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 185 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
S+ + + Y C+ CG +FT LT H R+HTG +
Sbjct: 1 GSSGSSGSGEKPYKCNECGKVFTQNSHLTNHW-RIHTGEKPSGPS 44
Score = 30.5 bits (70), Expect = 0.073
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 316 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
S+ + + Y C+ CG +FT LT H R+HTG +
Sbjct: 1 GSSGSSGSGEKPYKCNECGKVFTQNSHLTNHW-RIHTGEKPSGPS 44
Score = 25.5 bits (57), Expect = 4.7
Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 18/61 (29%)
Query: 242 HVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVCN 301
+ E+P+ C C + F + L +H H G E+ +
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNS-----------------HLTNHWRIHTG-EKPSGPS 44
Query: 302 H 302
Sbjct: 45 S 45
Score = 25.5 bits (57), Expect = 5.0
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 373 HVRQHTDERPFPCPVCQRTFRRK 395
+ E+P+ C C + F +
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQN 25
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.6 bits (78), Expect = 0.006
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG Y C +C F L +H HT E+P
Sbjct: 5 SSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.006
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG Y C +C F L +H HT E+P
Sbjct: 5 SSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.13
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 185 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQ 228
S+ + Y CH CG +F L +H +HTG +
Sbjct: 1 GSSGSSGTGEKPYKCHECGKVFRRNSHLARH-QLIHTGEKPSGPSS 45
Score = 29.8 bits (68), Expect = 0.13
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 316 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQ 359
S+ + Y CH CG +F L +H +HTG +
Sbjct: 1 GSSGSSGTGEKPYKCHECGKVFRRNSHLARH-QLIHTGEKPSGPSS 45
Score = 27.4 bits (62), Expect = 0.91
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 241 QHVRQHTDERPFPCPVCQRTFRRK 264
T E+P+ C C + FRR
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRN 25
Score = 27.4 bits (62), Expect = 0.91
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 372 QHVRQHTDERPFPCPVCQRTFRRK 395
T E+P+ C C + FRR
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRN 25
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 33.3 bits (77), Expect = 0.007
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG CT+C F +L H R H D++
Sbjct: 5 SSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 33.3 bits (77), Expect = 0.007
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG CT+C F +L H R H D++
Sbjct: 5 SSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 29.4 bits (67), Expect = 0.18
Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 3/44 (6%)
Query: 186 RHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
S+ + C CG F K +L H R H +
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMH-QRTHVDDKHSGPS 44
Score = 29.4 bits (67), Expect = 0.18
Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 3/44 (6%)
Query: 317 RHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
S+ + C CG F K +L H R H +
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMH-QRTHVDDKHSGPS 44
Score = 27.1 bits (61), Expect = 1.1
Identities = 11/60 (18%), Positives = 17/60 (28%), Gaps = 18/60 (30%)
Query: 242 HVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVCN 301
T E+P C C + F K +LI H H ++ +
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKS-----------------QLIMHQRTHVD-DKHSGPS 44
Score = 26.4 bits (59), Expect = 2.1
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 373 HVRQHTDERPFPCPVCQRTFRRK 395
T E+P C C + F K
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWK 25
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 33.3 bits (77), Expect = 0.008
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
G ++ C +C F A LR H H E+P
Sbjct: 5 SSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.008
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
G ++ C +C F A LR H H E+P
Sbjct: 5 SSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.14
Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 3/44 (6%)
Query: 187 HVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQ 228
S+ + + C C F+ L H +H G +
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLH-QNVHVGEKPSGPSS 45
Score = 29.8 bits (68), Expect = 0.14
Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 3/44 (6%)
Query: 318 HVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQ 359
S+ + + C C F+ L H +H G +
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLH-QNVHVGEKPSGPSS 45
Score = 26.0 bits (58), Expect = 3.5
Identities = 4/24 (16%), Positives = 7/24 (29%)
Query: 242 HVRQHTDERPFPCPVCQRTFRRKG 265
E+ + C C F +
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQAS 26
Score = 25.6 bits (57), Expect = 4.3
Identities = 4/23 (17%), Positives = 7/23 (30%)
Query: 373 HVRQHTDERPFPCPVCQRTFRRK 395
E+ + C C F +
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQA 25
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.2 bits (77), Expect = 0.008
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG Y C +C F L +H HT E+P
Sbjct: 5 SSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 33.2 bits (77), Expect = 0.008
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG Y C +C F L +H HT E+P
Sbjct: 5 SSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 28.2 bits (64), Expect = 0.53
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
Y C+ CG +FT L +H +HTG +
Sbjct: 13 YKCNECGKVFTQNSHLARH-RGIHTGEKPSGPS 44
Score = 28.2 bits (64), Expect = 0.53
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
Y C+ CG +FT L +H +HTG +
Sbjct: 13 YKCNECGKVFTQNSHLARH-RGIHTGEKPSGPS 44
Score = 27.1 bits (61), Expect = 1.5
Identities = 11/61 (18%), Positives = 17/61 (27%), Gaps = 18/61 (29%)
Query: 242 HVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVCN 301
T E+P+ C C + F + L H H G E+ +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNS-----------------HLARHRGIHTG-EKPSGPS 44
Query: 302 H 302
Sbjct: 45 S 45
Score = 25.5 bits (57), Expect = 4.0
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 373 HVRQHTDERPFPCPVCQRTFRRK 395
T E+P+ C C + F +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQN 25
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 33.3 bits (77), Expect = 0.009
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
G + C+ C F A QH R HT E+P
Sbjct: 5 SSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.009
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
G + C+ C F A QH R HT E+P
Sbjct: 5 SSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 28.3 bits (64), Expect = 0.46
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 185 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
S+ + + C CG F QH R+HTG +
Sbjct: 1 GSSGSSGHGERGHRCSDCGKFFLQASNFIQH-RRIHTGEKPSGPS 44
Score = 28.3 bits (64), Expect = 0.46
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 316 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
S+ + + C CG F QH R+HTG +
Sbjct: 1 GSSGSSGHGERGHRCSDCGKFFLQASNFIQH-RRIHTGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.65
Identities = 5/24 (20%), Positives = 7/24 (29%)
Query: 241 QHVRQHTDERPFPCPVCQRTFRRK 264
ER C C + F +
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQA 25
Score = 27.9 bits (63), Expect = 0.65
Identities = 5/24 (20%), Positives = 7/24 (29%)
Query: 372 QHVRQHTDERPFPCPVCQRTFRRK 395
ER C C + F +
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQA 25
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 32.9 bits (76), Expect = 0.011
Identities = 13/39 (33%), Positives = 15/39 (38%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
G Y C+QC F L H R HT E+P
Sbjct: 5 SSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 32.9 bits (76), Expect = 0.011
Identities = 13/39 (33%), Positives = 15/39 (38%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
G Y C+QC F L H R HT E+P
Sbjct: 5 SSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 31.4 bits (72), Expect = 0.044
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 187 HVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQ 228
S+ A Y C C F+ K RL H R+HT +
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVH-QRMHTREKPSGPSS 45
Score = 31.4 bits (72), Expect = 0.044
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 318 HVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQ 359
S+ A Y C C F+ K RL H R+HT +
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVH-QRMHTREKPSGPSS 45
Score = 26.3 bits (59), Expect = 2.4
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 242 HVRQHTDERPFPCPVCQRTFRRK 264
P+ C C+++F K
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGK 25
Score = 26.3 bits (59), Expect = 2.4
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 373 HVRQHTDERPFPCPVCQRTFRRK 395
P+ C C+++F K
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGK 25
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 33.0 bits (74), Expect = 0.011
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 246 HTDERPFPCPVCQRTFRRK 264
+ E+P+ CPVC F+RK
Sbjct: 5 SSGEKPYSCPVCGLRFKRK 23
Score = 33.0 bits (74), Expect = 0.011
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 377 HTDERPFPCPVCQRTFRRK 395
+ E+P+ CPVC F+RK
Sbjct: 5 SSGEKPYSCPVCGLRFKRK 23
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 32.9 bits (76), Expect = 0.013
Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQ-HTDERPFPCP 255
TG Y C +C F L +H R HT E+P
Sbjct: 5 SSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 32.9 bits (76), Expect = 0.013
Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQ-HTDERPFPCP 386
TG Y C +C F L +H R HT E+P
Sbjct: 5 SSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 31.4 bits (72), Expect = 0.042
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
Y C CG F L +H HTG +
Sbjct: 13 YECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 31.4 bits (72), Expect = 0.042
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
Y C CG F L +H HTG +
Sbjct: 13 YECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 27.1 bits (61), Expect = 1.1
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 241 QHVRQHTDERPFPCPVCQRTFRRK 264
T ++P+ C C + F +
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQN 25
Score = 27.1 bits (61), Expect = 1.1
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 372 QHVRQHTDERPFPCPVCQRTFRRK 395
T ++P+ C C + F +
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQN 25
Score = 25.2 bits (56), Expect = 5.3
Identities = 10/63 (15%), Positives = 15/63 (23%), Gaps = 19/63 (30%)
Query: 31 HLRLHSGERRFPCEYCSLLVYPVLILFRFIFVCTQGSADSHKHHLKDHVNKIHLHPKTFS 90
+G++ + C C G A L H H K
Sbjct: 3 SGSSGTGKKPYECIEC-------------------GKAFIQNTSLIRHWRYYHTGEKPSG 43
Query: 91 CNS 93
+S
Sbjct: 44 PSS 46
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 32.5 bits (75), Expect = 0.014
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 216 RLHTGSLSYPCTQCPGK-FYSAYELRQHVRQHTDERPFPC 254
TG Y C +C GK F +L H + H+ +
Sbjct: 5 SSGTGENPYECCEC-GKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 32.5 bits (75), Expect = 0.014
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 347 RLHTGSLSYPCTQCPGK-FYSAYELRQHVRQHTDERPFPC 385
TG Y C +C GK F +L H + H+ +
Sbjct: 5 SSGTGENPYECCEC-GKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 26.7 bits (60), Expect = 1.8
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 241 QHVRQHTDERPFPCPVCQRTFRRK 264
T E P+ C C + F RK
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRK 25
Score = 26.7 bits (60), Expect = 1.8
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 372 QHVRQHTDERPFPCPVCQRTFRRK 395
T E P+ C C + F RK
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRK 25
Score = 26.7 bits (60), Expect = 1.9
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 187 HVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPC 226
S+ + Y C CG +F+ K +L H + H+G
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSH-QKTHSGQSGPSS 43
Score = 26.7 bits (60), Expect = 1.9
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 318 HVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPC 357
S+ + Y C CG +F+ K +L H + H+G
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSH-QKTHSGQSGPSS 43
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.5 bits (75), Expect = 0.015
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
TG Y C +C F L +H HT E+P
Sbjct: 5 SSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.015
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
TG Y C +C F L +H HT E+P
Sbjct: 5 SSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 27.8 bits (63), Expect = 0.68
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
Y C+ CG +FT L +H +HTG +
Sbjct: 13 YKCNECGKVFTQNSHLVRH-RGIHTGEKPSGPS 44
Score = 27.8 bits (63), Expect = 0.68
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
Y C+ CG +FT L +H +HTG +
Sbjct: 13 YKCNECGKVFTQNSHLVRH-RGIHTGEKPSGPS 44
Score = 26.7 bits (60), Expect = 1.7
Identities = 11/61 (18%), Positives = 18/61 (29%), Gaps = 18/61 (29%)
Query: 242 HVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVCN 301
T E+P+ C C + F + L+ H H G E+ +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNS-----------------HLVRHRGIHTG-EKPSGPS 44
Query: 302 H 302
Sbjct: 45 S 45
Score = 25.1 bits (56), Expect = 5.6
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 373 HVRQHTDERPFPCPVCQRTFRRK 395
T E+P+ C C + F +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQN 25
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 32.5 bits (75), Expect = 0.017
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
+G + C +C F L H+R H+ E+
Sbjct: 5 SSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 32.5 bits (75), Expect = 0.017
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
+G + C +C F L H+R H+ E+
Sbjct: 5 SSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 29.8 bits (68), Expect = 0.15
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 185 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 227
S+ + + + C+ CG F + L HL RLH+ S +
Sbjct: 1 GSSGSSGSGERPFKCNECGKGFGRRSHLAGHL-RLHSREKSSGPS 44
Score = 29.8 bits (68), Expect = 0.15
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 316 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCT 358
S+ + + + C+ CG F + L HL RLH+ S +
Sbjct: 1 GSSGSSGSGERPFKCNECGKGFGRRSHLAGHL-RLHSREKSSGPS 44
Score = 27.1 bits (61), Expect = 1.3
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 242 HVRQHTDERPFPCPVCQRTFRRK 264
+ ERPF C C + F R+
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRR 25
Score = 27.1 bits (61), Expect = 1.3
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 373 HVRQHTDERPFPCPVCQRTFRRK 395
+ ERPF C C + F R+
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRR 25
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 32.1 bits (74), Expect = 0.021
Identities = 12/37 (32%), Positives = 13/37 (35%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPF 252
G Y C C +F LR HV HT P
Sbjct: 4 GSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 32.1 bits (74), Expect = 0.021
Identities = 12/37 (32%), Positives = 13/37 (35%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPF 383
G Y C C +F LR HV HT P
Sbjct: 4 GSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 26.7 bits (60), Expect = 1.5
Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTG 220
Y C CG F L H+ +HTG
Sbjct: 12 YKCETCGARFVQVAHLRAHV-LIHTG 36
Score = 26.7 bits (60), Expect = 1.5
Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTG 351
Y C CG F L H+ +HTG
Sbjct: 12 YKCETCGARFVQVAHLRAHV-LIHTG 36
Score = 26.7 bits (60), Expect = 1.5
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 242 HVRQHTDERPFPCPVCQRTFRRKG 265
E+P+ C C F +
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVA 25
Score = 25.9 bits (58), Expect = 2.7
Identities = 5/23 (21%), Positives = 8/23 (34%)
Query: 373 HVRQHTDERPFPCPVCQRTFRRK 395
E+P+ C C F +
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQV 24
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 31.8 bits (73), Expect = 0.024
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
+G S+ C +C F LR H R H E+
Sbjct: 5 SSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 31.8 bits (73), Expect = 0.024
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
+G S+ C +C F LR H R H E+
Sbjct: 5 SSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 26.4 bits (59), Expect = 2.1
Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTG 220
+TC CG F L H R+H G
Sbjct: 13 HTCDECGKNFCYISALRIH-QRVHMG 37
Score = 26.4 bits (59), Expect = 2.1
Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTG 351
+TC CG F L H R+H G
Sbjct: 13 HTCDECGKNFCYISALRIH-QRVHMG 37
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 32.7 bits (74), Expect = 0.024
Identities = 10/75 (13%), Positives = 22/75 (29%), Gaps = 10/75 (13%)
Query: 180 SASLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAY 237
S+ + H C CG +F + L++ + C +C
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRK--------TPMCEKCRKDSCQEA 53
Query: 238 ELRQHVRQHTDERPF 252
L + + ++
Sbjct: 54 ALNKDEGNESGKKTS 68
Score = 32.7 bits (74), Expect = 0.024
Identities = 10/75 (13%), Positives = 22/75 (29%), Gaps = 10/75 (13%)
Query: 311 SASLLARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAY 368
S+ + H C CG +F + L++ + C +C
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRK--------TPMCEKCRKDSCQEA 53
Query: 369 ELRQHVRQHTDERPF 383
L + + ++
Sbjct: 54 ALNKDEGNESGKKTS 68
Score = 30.8 bits (69), Expect = 0.11
Identities = 8/55 (14%), Positives = 19/55 (34%), Gaps = 8/55 (14%)
Query: 341 LTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRK 395
+ ++H G S C++C F + + C C++ ++
Sbjct: 6 SGKR-QKIHLGDRSQKCSKCGIIF-------IRRSTLSRRKTPMCEKCRKDSCQE 52
Score = 28.1 bits (62), Expect = 1.3
Identities = 10/88 (11%), Positives = 20/88 (22%), Gaps = 27/88 (30%)
Query: 235 SAYELRQHVRQHTDERPFPCPVCQRTFRRKGLESFTFSLRLFCLYFPQELISHSSYHGGE 294
S+ + + H +R C C F S
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIF------------------------IRRSTL-SR 36
Query: 295 ERRYVCNHMQCTRRFHSASLLARHVSTH 322
+ +C +C + + L +
Sbjct: 37 RKTPMCE--KCRKDSCQEAALNKDEGNE 62
Score = 25.4 bits (55), Expect = 9.6
Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 10/55 (18%)
Query: 81 KIHLHPKTFSCNSCGQTWLGYTSWKQHVAACREKRRKETFPCKRCDERFSTRDGL 135
KIHL ++ C+ CG ++ ++ + +T C++C + L
Sbjct: 11 KIHLGDRSQKCSKCGIIFIRRSTLSRR----------KTPMCEKCRKDSCQEAAL 55
Score = 25.4 bits (55), Expect = 9.7
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 366 SAYELRQHVRQHTDERPFPCPVCQRTFRRK 395
S+ + + H +R C C F R+
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRR 31
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 31.7 bits (73), Expect = 0.030
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
+ + S+ C +C F L QH R HT E+P
Sbjct: 5 SSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 31.7 bits (73), Expect = 0.030
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
+ + S+ C +C F L QH R HT E+P
Sbjct: 5 SSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.093
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 185 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTG 220
S+ + + CH CG FT K L QH R+HTG
Sbjct: 1 GSSGSSGSSTKSHQCHECGRGFTLKSHLNQHQ-RIHTG 37
Score = 30.2 bits (69), Expect = 0.093
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 316 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTG 351
S+ + + CH CG FT K L QH R+HTG
Sbjct: 1 GSSGSSGSSTKSHQCHECGRGFTLKSHLNQHQ-RIHTG 37
Score = 26.7 bits (60), Expect = 1.5
Identities = 5/24 (20%), Positives = 7/24 (29%)
Query: 241 QHVRQHTDERPFPCPVCQRTFRRK 264
+ + C C R F K
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLK 25
Score = 26.7 bits (60), Expect = 1.5
Identities = 5/24 (20%), Positives = 7/24 (29%)
Query: 372 QHVRQHTDERPFPCPVCQRTFRRK 395
+ + C C R F K
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLK 25
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 31.5 bits (72), Expect = 0.032
Identities = 10/35 (28%), Positives = 11/35 (31%)
Query: 218 HTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPF 252
G Y C QC F L H R + P
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 31.5 bits (72), Expect = 0.032
Identities = 10/35 (28%), Positives = 11/35 (31%)
Query: 349 HTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPF 383
G Y C QC F L H R + P
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 27.6 bits (62), Expect = 0.85
Identities = 9/26 (34%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTG 220
Y C CG FT + L H R +
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQ-RSCSQ 36
Score = 27.6 bits (62), Expect = 0.85
Identities = 9/26 (34%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTG 351
Y C CG FT + L H R +
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQ-RSCSQ 36
Score = 26.1 bits (58), Expect = 2.7
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 242 HVRQHTDERPFPCPVCQRTFRRKG 265
E P+ C C ++F ++G
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRG 25
Score = 24.5 bits (54), Expect = 9.7
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 373 HVRQHTDERPFPCPVCQRTFRRK 395
E P+ C C ++F ++
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQR 24
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 31.4 bits (72), Expect = 0.036
Identities = 11/38 (28%), Positives = 14/38 (36%)
Query: 215 ARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPF 252
+ +G Y C +C F L H R HT P
Sbjct: 2 SSGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 31.4 bits (72), Expect = 0.036
Identities = 11/38 (28%), Positives = 14/38 (36%)
Query: 346 ARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPF 383
+ +G Y C +C F L H R HT P
Sbjct: 2 SSGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 29.5 bits (67), Expect = 0.15
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTG 220
Y C CG F K LT H R+HTG
Sbjct: 11 YECQECGKSFRQKGSLTLH-ERIHTG 35
Score = 29.5 bits (67), Expect = 0.15
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTG 351
Y C CG F K LT H R+HTG
Sbjct: 11 YECQECGKSFRQKGSLTLH-ERIHTG 35
Score = 25.6 bits (57), Expect = 3.8
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 244 RQHTDERPFPCPVCQRTFRRKG 265
+ +R + C C ++FR+KG
Sbjct: 3 SGSSGQRVYECQECGKSFRQKG 24
Score = 25.2 bits (56), Expect = 6.1
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 375 RQHTDERPFPCPVCQRTFRRK 395
+ +R + C C ++FR+K
Sbjct: 3 SGSSGQRVYECQECGKSFRQK 23
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 34.8 bits (79), Expect = 0.052
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 162 GEERRYVCNHMQCTRRFHSASLLARHVSTHAI 193
Y C+ C+ S L HV++H +
Sbjct: 176 SSGHGYQCH--VCSAVLFSPLDLDAHVASHGL 205
Score = 34.8 bits (79), Expect = 0.052
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 293 GEERRYVCNHMQCTRRFHSASLLARHVSTHAI 324
Y C+ C+ S L HV++H +
Sbjct: 176 SSGHGYQCH--VCSAVLFSPLDLDAHVASHGL 205
Score = 34.4 bits (78), Expect = 0.083
Identities = 10/43 (23%), Positives = 13/43 (30%)
Query: 207 KRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDE 249
K L + Y C C +S +L HV H
Sbjct: 164 KHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLH 206
Score = 34.4 bits (78), Expect = 0.083
Identities = 10/43 (23%), Positives = 13/43 (30%)
Query: 338 KRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDE 380
K L + Y C C +S +L HV H
Sbjct: 164 KHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLH 206
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 30.8 bits (70), Expect = 0.055
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 218 HTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 254
+G Y C +C F L QH + HT +
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 30.8 bits (70), Expect = 0.055
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 349 HTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPC 385
+G Y C +C F L QH + HT +
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 30.0 bits (68), Expect = 0.099
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 189 STHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPC 226
S + + Y+C C F+ RL QH ++HT
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQH-QKMHTVKSGPSS 41
Score = 30.0 bits (68), Expect = 0.099
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 320 STHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPC 357
S + + Y+C C F+ RL QH ++HT
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQH-QKMHTVKSGPSS 41
Score = 26.5 bits (59), Expect = 2.2
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 246 HTDERPFPCPVCQRTFRRK 264
+ E+P+ C C+ TF
Sbjct: 5 SSGEKPYSCAECKETFSDN 23
Score = 26.5 bits (59), Expect = 2.2
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 377 HTDERPFPCPVCQRTFRRK 395
+ E+P+ C C+ TF
Sbjct: 5 SSGEKPYSCAECKETFSDN 23
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces
cerevisiae} SCOP: c.31.1.5
Length = 361
Score = 33.8 bits (77), Expect = 0.081
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 348 LHTGSLSYP-CTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRKVCT 398
H GS ++ C C GK Y + + +H + C VC + +
Sbjct: 138 AH-GSFAHCHCIGC-GKVYPPQVFKSKLAEHPIKDFVKCDVCGELVKPAIVF 187
Score = 32.7 bits (74), Expect = 0.22
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 217 LHTGSLSYP-CTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFR 262
H GS ++ C C GK Y + + +H + C VC +
Sbjct: 138 AH-GSFAHCHCIGC-GKVYPPQVFKSKLAEHPIKDFVKCDVCGELVK 182
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP
ribose,, gene regulation; HET: ALY OAD; 1.50A
{Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A*
1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Length = 289
Score = 33.9 bits (78), Expect = 0.082
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 348 LHTGSLSYP-CTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRKVCT 398
H GS ++ C C GK Y + + +H + C VC + +
Sbjct: 130 AH-GSFAHCHCIGC-GKVYPPQVFKSKLAEHPIKDFVKCDVCGELVKPAIVF 179
Score = 32.4 bits (74), Expect = 0.23
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 217 LHTGSLSYP-CTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFR 262
H GS ++ C C GK Y + + +H + C VC +
Sbjct: 130 AH-GSFAHCHCIGC-GKVYPPQVFKSKLAEHPIKDFVKCDVCGELVK 174
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 31.3 bits (70), Expect = 0.14
Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 4/86 (4%)
Query: 178 FHSASLLARHVSTHAIQYTCHMCGHMFTCKRRLTQHLARLHTG---SLSYPCTQCPGKFY 234
H + Y C C T H+ H + SY C +C
Sbjct: 2 AHHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTK 61
Query: 235 SAYELRQHV-RQHTDERPFPCPVCQR 259
L +H + H E F + +R
Sbjct: 62 RYDALSEHNLKYHPGEENFKLTMVKR 87
Score = 31.3 bits (70), Expect = 0.14
Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 4/86 (4%)
Query: 309 FHSASLLARHVSTHAIQYTCHMCGHMFTCKRRLTQHLARLHTG---SLSYPCTQCPGKFY 365
H + Y C C T H+ H + SY C +C
Sbjct: 2 AHHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTK 61
Query: 366 SAYELRQHV-RQHTDERPFPCPVCQR 390
L +H + H E F + +R
Sbjct: 62 RYDALSEHNLKYHPGEENFKLTMVKR 87
Score = 28.6 bits (63), Expect = 1.2
Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 8/71 (11%)
Query: 163 EERRYVCNHMQCTRRFHSASLLARHVSTHAIQ------YTCHMCGHMFTCKRRLTQHLAR 216
E Y C + CT + ++ HV + Y C C + L++H +
Sbjct: 15 VEGGYECKY--CTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLK 72
Query: 217 LHTGSLSYPCT 227
H G ++ T
Sbjct: 73 YHPGEENFKLT 83
Score = 28.6 bits (63), Expect = 1.2
Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 8/71 (11%)
Query: 294 EERRYVCNHMQCTRRFHSASLLARHVSTHAIQ------YTCHMCGHMFTCKRRLTQHLAR 347
E Y C + CT + ++ HV + Y C C + L++H +
Sbjct: 15 VEGGYECKY--CTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLK 72
Query: 348 LHTGSLSYPCT 358
H G ++ T
Sbjct: 73 YHPGEENFKLT 83
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.23
Identities = 22/134 (16%), Positives = 39/134 (29%), Gaps = 34/134 (25%)
Query: 117 KETFPCKRCDERFSTRDGLESFTFSLRLFCLYFPQELISHSSYHGGEERRYVCNHMQ-CT 175
++ + R D F +++ FS+ + P L H G+ R N+
Sbjct: 1643 QDVW--NRADNHF-----KDTYGFSILDIVINNPVNLTIHFGGEKGKRIRE--NYSAMIF 1693
Query: 176 RRFHSASLLARHVSTHAIQYTCHMCGHMFTCKR---RLTQHLARLHTGSLSYPCTQCPGK 232
L + H + F ++ TQ TQ P
Sbjct: 1694 ETIVDGKLKTEKIFKEI---NEHSTSYTFRSEKGLLSATQF-------------TQ-PAL 1736
Query: 233 F---YSAYE-LRQH 242
+A+E L+
Sbjct: 1737 TLMEKAAFEDLKSK 1750
Score = 31.2 bits (70), Expect = 0.83
Identities = 26/168 (15%), Positives = 41/168 (24%), Gaps = 56/168 (33%)
Query: 220 GSLSYPCTQCPG---KFYSAYELRQHVRQHTDERPFPCPVCQRTFRR---KGLESFTFSL 273
GS Q G Y Q + R +++ FS+
Sbjct: 1625 GS------QEQGMGMDLYKTS-----------------KAAQDVWNRADNHFKDTYGFSI 1661
Query: 274 RLFCLYFPQELISHSSYHGGEERRYVCNHMQ-CTRRFHSASLLARHVSTHAIQYTCHMCG 332
+ P L H G+ R N+ L + H
Sbjct: 1662 LDIVINNPVNLTIHFGGEKGKRIRE--NYSAMIFETIVDGKLKTEKIFKEI---NEHSTS 1716
Query: 333 HMFTCKR---RLTQHLARLHTGSLSYPCTQCPGKF---YSAYE-LRQH 373
+ F ++ TQ TQ P +A+E L+
Sbjct: 1717 YTFRSEKGLLSATQF-------------TQ-PALTLMEKAAFEDLKSK 1750
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila
melanogaster}
Length = 381
Score = 31.7 bits (71), Expect = 0.39
Identities = 9/55 (16%), Positives = 17/55 (30%), Gaps = 7/55 (12%)
Query: 160 HGGEERRYVCNHMQCTRRFHSA-------SLLARHVSTHAIQYTCHMCGHMFTCK 207
GGE C++ +C + H+ +L+ C C +
Sbjct: 320 DGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374
Score = 31.7 bits (71), Expect = 0.39
Identities = 9/55 (16%), Positives = 17/55 (30%), Gaps = 7/55 (12%)
Query: 291 HGGEERRYVCNHMQCTRRFHSA-------SLLARHVSTHAIQYTCHMCGHMFTCK 338
GGE C++ +C + H+ +L+ C C +
Sbjct: 320 DGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 35
Score = 27.9 bits (61), Expect = 0.51
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 219 TGSLSYPCTQCPGKFYSAYELRQHVRQ 245
+GS Y C C KF S+ LR H+R+
Sbjct: 3 SGSSGYVCALCLKKFVSSIRLRSHIRE 29
Score = 27.9 bits (61), Expect = 0.51
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 350 TGSLSYPCTQCPGKFYSAYELRQHVRQ 376
+GS Y C C KF S+ LR H+R+
Sbjct: 3 SGSSGYVCALCLKKFVSSIRLRSHIRE 29
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 27.6 bits (62), Expect = 0.58
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 165 RRYVCNHMQCTRRFHSASLLARHVSTH 191
R ++C C +RF + L RH TH
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
Score = 27.6 bits (62), Expect = 0.58
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 296 RRYVCNHMQCTRRFHSASLLARHVSTH 322
R ++C C +RF + L RH TH
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 27.9 bits (62), Expect = 0.68
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 218 HTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERP 251
G + C++C F L QH R H +
Sbjct: 7 GAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 27.9 bits (62), Expect = 0.68
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 349 HTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERP 382
G + C++C F L QH R H +
Sbjct: 7 GAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 25.6 bits (56), Expect = 4.9
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 241 QHVRQHTDERPFPCPVCQRTFRRK 264
E PF C C R F ++
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQR 25
Score = 25.6 bits (56), Expect = 4.9
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 372 QHVRQHTDERPFPCPVCQRTFRRK 395
E PF C C R F ++
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQR 25
Score = 25.6 bits (56), Expect = 4.9
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 185 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTG 220
S+ A + + C C +FT + L QH R H
Sbjct: 1 GSSGSSGAGENPFKCSKCDRVFTQRNYLVQHE-RTHAR 37
Score = 25.6 bits (56), Expect = 4.9
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 316 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTG 351
S+ A + + C C +FT + L QH R H
Sbjct: 1 GSSGSSGAGENPFKCSKCDRVFTQRNYLVQHE-RTHAR 37
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 28.8 bits (63), Expect = 1.0
Identities = 9/44 (20%), Positives = 14/44 (31%)
Query: 210 LTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFP 253
L +H+ + C C +F S L H +P
Sbjct: 41 LKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSD 84
Score = 28.8 bits (63), Expect = 1.0
Identities = 9/44 (20%), Positives = 14/44 (31%)
Query: 341 LTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFP 384
L +H+ + C C +F S L H +P
Sbjct: 41 LKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSD 84
Score = 27.6 bits (60), Expect = 2.8
Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 87 KTFSCNSCGQ-TWLGYTSWKQHVAACREKRRKETFPCKRCDERFSTRDGLE 136
C +C T K+H+ C+ + ++ C+ C ++F ++ GL
Sbjct: 23 GEAVCPTCNVVTRKTLVGLKKHMEVCQ--KLQDALKCQHCRKQFKSKAGLN 71
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 1.4
Identities = 6/18 (33%), Positives = 9/18 (50%), Gaps = 6/18 (33%)
Query: 264 KGLESFTFSLRLFCLYFP 281
K L++ SL+ LY
Sbjct: 23 KKLQA---SLK---LYAD 34
>2ecv_A Tripartite motif-containing protein 5; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 28.0 bits (63), Expect = 1.6
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 244 RQHTDERPFPCPVCQRTFRRKGL 266
+ D+ CPVC+ +++ + +
Sbjct: 52 KSMLDKGESSCPVCRISYQPENI 74
Score = 26.8 bits (60), Expect = 4.0
Identities = 5/21 (23%), Positives = 12/21 (57%)
Query: 375 RQHTDERPFPCPVCQRTFRRK 395
+ D+ CPVC+ +++ +
Sbjct: 52 KSMLDKGESSCPVCRISYQPE 72
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 26.5 bits (59), Expect = 1.7
Identities = 7/30 (23%), Positives = 17/30 (56%)
Query: 162 GEERRYVCNHMQCTRRFHSASLLARHVSTH 191
G++++++C+ C + + S L H+ H
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWH 33
Score = 26.5 bits (59), Expect = 1.7
Identities = 7/30 (23%), Positives = 17/30 (56%)
Query: 293 GEERRYVCNHMQCTRRFHSASLLARHVSTH 322
G++++++C+ C + + S L H+ H
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWH 33
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 30.2 bits (67), Expect = 1.8
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 189 STHAIQYTCHMCGHMFTCKRRLTQHLARLH 218
+ Y C++C F+ L++HL H
Sbjct: 111 IVNPSSYVCNVCNARFSTMSALSEHLRSDH 140
Score = 30.2 bits (67), Expect = 1.8
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 320 STHAIQYTCHMCGHMFTCKRRLTQHLARLH 349
+ Y C++C F+ L++HL H
Sbjct: 111 IVNPSSYVCNVCNARFSTMSALSEHLRSDH 140
Score = 28.6 bits (63), Expect = 5.4
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 223 SYPCTQCPGKFYSAYELRQHVRQ 245
SY C C +F + L +H+R
Sbjct: 116 SYVCNVCNARFSTMSALSEHLRS 138
Score = 28.6 bits (63), Expect = 5.4
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 354 SYPCTQCPGKFYSAYELRQHVRQ 376
SY C C +F + L +H+R
Sbjct: 116 SYVCNVCNARFSTMSALSEHLRS 138
>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1
Length = 88
Score = 27.9 bits (61), Expect = 2.1
Identities = 12/43 (27%), Positives = 16/43 (37%)
Query: 207 KRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDE 249
KR + +Y C C K S EL H+ H +E
Sbjct: 9 KRDFIILGNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEE 51
Score = 27.9 bits (61), Expect = 2.1
Identities = 12/43 (27%), Positives = 16/43 (37%)
Query: 338 KRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDE 380
KR + +Y C C K S EL H+ H +E
Sbjct: 9 KRDFIILGNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEE 51
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein,
phosphorylation, transcriptional corepresso
transcription repressor; HET: NAD; 1.95A {Homo sapiens}
SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A*
3ga0_A 2ome_A*
Length = 347
Score = 28.8 bits (65), Expect = 3.1
Identities = 9/43 (20%), Positives = 12/43 (27%)
Query: 198 HMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELR 240
H+ RR T L G+ Q A +R
Sbjct: 125 STLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIR 167
Score = 28.8 bits (65), Expect = 3.1
Identities = 9/43 (20%), Positives = 12/43 (27%)
Query: 329 HMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELR 371
H+ RR T L G+ Q A +R
Sbjct: 125 STLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIR 167
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 25.7 bits (56), Expect = 3.2
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 164 ERRYVCNHMQCTRRFHSASLLARHVSTHA 192
+R Y C+H C + F L RH +H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
Score = 25.7 bits (56), Expect = 3.2
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 295 ERRYVCNHMQCTRRFHSASLLARHVSTHA 323
+R Y C+H C + F L RH +H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
>2ecw_A Tripartite motif-containing protein 30; metal binding protein,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 85
Score = 27.0 bits (60), Expect = 3.2
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 245 QHTDERPFPCPVCQRTFRRKGL 266
+ CPVC+ + L
Sbjct: 53 NRNTDGKGNCPVCRVPYPFGNL 74
Score = 25.8 bits (57), Expect = 8.4
Identities = 4/20 (20%), Positives = 7/20 (35%)
Query: 376 QHTDERPFPCPVCQRTFRRK 395
+ CPVC+ +
Sbjct: 53 NRNTDGKGNCPVCRVPYPFG 72
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 28.6 bits (63), Expect = 3.5
Identities = 4/35 (11%), Positives = 9/35 (25%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDER 250
L G + + +LR + +
Sbjct: 201 NLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
Score = 28.6 bits (63), Expect = 3.5
Identities = 4/35 (11%), Positives = 9/35 (25%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDER 381
L G + + +LR + +
Sbjct: 201 NLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 26.0 bits (57), Expect = 3.8
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 162 GEERRYVCNHMQCTRRFHSASLLARHVSTH 191
++ + C CT+ F + H+ TH
Sbjct: 14 MPDKTFECLFPGCTKTFKRRYNIRSHIQTH 43
Score = 26.0 bits (57), Expect = 3.8
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 293 GEERRYVCNHMQCTRRFHSASLLARHVSTH 322
++ + C CT+ F + H+ TH
Sbjct: 14 MPDKTFECLFPGCTKTFKRRYNIRSHIQTH 43
Score = 25.2 bits (55), Expect = 7.0
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 224 YPCT--QCPGKFYSAYELRQHVRQHTDER 250
+ C C F Y +R H++ H ++R
Sbjct: 19 FECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 25.2 bits (55), Expect = 7.0
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 355 YPCT--QCPGKFYSAYELRQHVRQHTDER 381
+ C C F Y +R H++ H ++R
Sbjct: 19 FECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 25.4 bits (56), Expect = 4.2
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 250 RPFPCPVCQRTFRRK 264
R F C VC R F R+
Sbjct: 1 RSFVCEVCTRAFARQ 15
Score = 25.4 bits (56), Expect = 4.2
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 381 RPFPCPVCQRTFRRK 395
R F C VC R F R+
Sbjct: 1 RSFVCEVCTRAFARQ 15
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 25.9 bits (56), Expect = 4.3
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 194 QYTCHMCGHMFTCKRRLTQHLARLHT 219
+ C+ C F+C + LTQH R+HT
Sbjct: 12 CFKCNKCEKTFSCSKYLTQH-ERIHT 36
Score = 25.9 bits (56), Expect = 4.3
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 325 QYTCHMCGHMFTCKRRLTQHLARLHT 350
+ C+ C F+C + LTQH R+HT
Sbjct: 12 CFKCNKCEKTFSCSKYLTQH-ERIHT 36
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 25.5 bits (56), Expect = 4.3
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 223 SYPCTQCPGKFYSAYELRQHVRQHTDER 250
SY C+ C +F SA L H+ H +R
Sbjct: 6 SYTCSFCKREFRSAQALGGHMNVHRRDR 33
Score = 25.5 bits (56), Expect = 4.3
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 354 SYPCTQCPGKFYSAYELRQHVRQHTDER 381
SY C+ C +F SA L H+ H +R
Sbjct: 6 SYTCSFCKREFRSAQALGGHMNVHRRDR 33
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger,
transcription activator; 3.00A {Escherichia coli} SCOP:
e.64.1.1
Length = 192
Score = 27.7 bits (61), Expect = 4.9
Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 16/71 (22%)
Query: 344 HLAR-LHTGSLSY-PCTQCPGKF-YSAYELRQHVRQHTDERPFPCPVCQRTFR----RKV 396
L R + +G L C C G F A++ F C +CQ R RK+
Sbjct: 122 TLVRFVESGLLQLSSCNCCGGNFITHAHQPVGS---------FACSLCQPPSRAVKRRKL 172
Query: 397 CTTPSPQPQHL 407
P+ L
Sbjct: 173 SQNPADIIPQL 183
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite
motif protein 34, interferon- responsive finger protein
1; NMR {Homo sapiens}
Length = 79
Score = 26.1 bits (58), Expect = 6.6
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 249 ERPFPCPVCQRTFRRKGL 266
CPVC ++ + L
Sbjct: 51 GGKSSCPVCGISYSFEHL 68
>1lns_A X-prolyl dipeptidyl aminopetidase; alpha beta hydrolase fold; 2.20A
{Lactococcus lactis} SCOP: a.40.2.1 b.18.1.13 c.69.1.21
Length = 763
Score = 27.8 bits (61), Expect = 7.6
Identities = 8/32 (25%), Positives = 11/32 (34%)
Query: 73 HHLKDHVNKIHLHPKTFSCNSCGQTWLGYTSW 104
L D ++L P NS Q W +
Sbjct: 519 AKLLDRDLNLNLPPVILQENSKDQVWTMMNDF 550
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.331 0.139 0.476
Gapped
Lambda K H
0.267 0.0557 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,458,787
Number of extensions: 379671
Number of successful extensions: 3566
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2869
Number of HSP's successfully gapped: 1166
Length of query: 410
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 314
Effective length of database: 4,021,377
Effective search space: 1262712378
Effective search space used: 1262712378
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 58 (26.5 bits)