RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12647
(410 letters)
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 34.2 bits (79), Expect = 0.001
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPC 226
Y C CG F+ L H+ ++HT + C
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37
Score = 34.2 bits (79), Expect = 0.001
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPC 357
Y C CG F+ L H+ ++HT + C
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37
Score = 32.3 bits (74), Expect = 0.006
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 224 YPCTQCPGKFYSAYELRQHVRQ-HTDERPFPCPV 256
Y C C F L H++Q HT ERP C V
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39
Score = 32.3 bits (74), Expect = 0.006
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 355 YPCTQCPGKFYSAYELRQHVRQ-HTDERPFPCPV 387
Y C C F L H++Q HT ERP C V
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 32.0 bits (73), Expect = 0.007
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDE 249
R HTG Y C+ C F L H +++ D
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP 34
Score = 32.0 bits (73), Expect = 0.007
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDE 380
R HTG Y C+ C F L H +++ D
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP 34
Score = 28.1 bits (63), Expect = 0.19
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 244 RQHTDERPFPCPVCQRTFRRKG 265
R HT E+P+ C C +TFR+K
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQ 22
Score = 27.7 bits (62), Expect = 0.24
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 375 RQHTDERPFPCPVCQRTFRRK 395
R HT E+P+ C C +TFR+K
Sbjct: 1 RTHTGEKPYACSHCDKTFRQK 21
Score = 24.6 bits (54), Expect = 3.0
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTG 220
Y C C F K+ L H + +
Sbjct: 9 YACSHCDKTFRQKQLLDMHF-KRYHD 33
Score = 24.6 bits (54), Expect = 3.0
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTG 351
Y C C F K+ L H + +
Sbjct: 9 YACSHCDKTFRQKQLLDMHF-KRYHD 33
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 30.5 bits (69), Expect = 0.023
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 223 SYPCTQ--CPGKFYSAYELRQHVRQHTDERPFPC 254
S+ C + C F L++H++ H+D R + C
Sbjct: 1 SFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 34
Score = 30.5 bits (69), Expect = 0.023
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 354 SYPCTQ--CPGKFYSAYELRQHVRQHTDERPFPC 385
S+ C + C F L++H++ H+D R + C
Sbjct: 1 SFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 34
Score = 25.8 bits (57), Expect = 1.1
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 167 YVCNHMQCTRRFHSASLLARHVSTH 191
+ C C + F+ L H+ H
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLH 26
Score = 25.8 bits (57), Expect = 1.1
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 298 YVCNHMQCTRRFHSASLLARHVSTH 322
+ C C + F+ L H+ H
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLH 26
Score = 25.1 bits (55), Expect = 1.7
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 195 YTCH--MCGHMFTCKRRLTQHLARLHTGSLSYPC 226
++C CG F K+ L +H+ +LH+ + Y C
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHM-KLHSDTRDYIC 34
Score = 25.1 bits (55), Expect = 1.7
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 326 YTCH--MCGHMFTCKRRLTQHLARLHTGSLSYPC 357
++C CG F K+ L +H+ +LH+ + Y C
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHM-KLHSDTRDYIC 34
Score = 25.1 bits (55), Expect = 2.3
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 29 QVHLRLHSGERRFPCEY 45
+ H++LHS R + CE+
Sbjct: 20 KEHMKLHSDTRDYICEF 36
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 30.3 bits (69), Expect = 0.027
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 218 HTGSLSYPCTQCPGKFYSAYELRQHVRQHTDE 249
H+G Y C +C F + L QH R HT E
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQRVHTGE 33
Score = 30.3 bits (69), Expect = 0.027
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 349 HTGSLSYPCTQCPGKFYSAYELRQHVRQHTDE 380
H+G Y C +C F + L QH R HT E
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQRVHTGE 33
Score = 29.1 bits (66), Expect = 0.076
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTG 220
Y C CG F+ L QH R+HTG
Sbjct: 8 YGCVECGKAFSRSSILVQHQ-RVHTG 32
Score = 29.1 bits (66), Expect = 0.076
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTG 351
Y C CG F+ L QH R+HTG
Sbjct: 8 YGCVECGKAFSRSSILVQHQ-RVHTG 32
Score = 27.6 bits (62), Expect = 0.26
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 246 HTDERPFPCPVCQRTFRRKG 265
H+ E+P+ C C + F R
Sbjct: 2 HSGEKPYGCVECGKAFSRSS 21
Score = 27.2 bits (61), Expect = 0.29
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 377 HTDERPFPCPVCQRTFRRK 395
H+ E+P+ C C + F R
Sbjct: 2 HSGEKPYGCVECGKAFSRS 20
Score = 23.7 bits (52), Expect = 4.8
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 164 ERRYVCNHMQCTRRFHSASLLARHVSTH 191
E+ Y C +C + F +S+L +H H
Sbjct: 5 EKPYGCV--ECGKAFSRSSILVQHQRVH 30
Score = 23.7 bits (52), Expect = 4.8
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 295 ERRYVCNHMQCTRRFHSASLLARHVSTH 322
E+ Y C +C + F +S+L +H H
Sbjct: 5 EKPYGCV--ECGKAFSRSSILVQHQRVH 30
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 30.3 bits (69), Expect = 0.029
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSL 222
Y C++C FT + H+ + HT ++
Sbjct: 9 YECYICHARFTQSGTMKMHILQKHTENV 36
Score = 30.3 bits (69), Expect = 0.029
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSL 353
Y C++C FT + H+ + HT ++
Sbjct: 9 YECYICHARFTQSGTMKMHILQKHTENV 36
Score = 29.2 bits (66), Expect = 0.058
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 244 RQHTDERPFPCPVCQRTFRRKG 265
R H+ E+P+ C +C F + G
Sbjct: 1 RTHSGEKPYECYICHARFTQSG 22
Score = 29.2 bits (66), Expect = 0.078
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 375 RQHTDERPFPCPVCQRTFRRK 395
R H+ E+P+ C +C F +
Sbjct: 1 RTHSGEKPYECYICHARFTQS 21
Score = 28.4 bits (64), Expect = 0.12
Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHV-RQHTDE 249
R H+G Y C C +F + ++ H+ ++HT+
Sbjct: 1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTEN 35
Score = 28.4 bits (64), Expect = 0.12
Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHV-RQHTDE 380
R H+G Y C C +F + ++ H+ ++HT+
Sbjct: 1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTEN 35
Score = 24.9 bits (55), Expect = 1.9
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 19/51 (37%)
Query: 33 RLHSGERRFPCEYCSLLVYPVLILFRFIFVCTQGSADSHKHHLKDHVNKIH 83
R HSGE+ + C C + + +K H+ + H
Sbjct: 1 RTHSGEKPYECYIC-------------------HARFTQSGTMKMHILQKH 32
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 29.6 bits (67), Expect = 0.037
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 164 ERRYVCNHMQCTRRFHSASLLARHVSTH 191
+R Y C+H C + F L RH +H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSH 28
Score = 29.6 bits (67), Expect = 0.037
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 295 ERRYVCNHMQCTRRFHSASLLARHVSTH 322
+R Y C+H C + F L RH +H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSH 28
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 35
Score = 29.3 bits (66), Expect = 0.066
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 218 HTGSLSYPCTQCPGKFYSAYELRQHVRQHTDE 249
+G + C C F + +H++ HTD
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT 33
Score = 29.3 bits (66), Expect = 0.066
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 349 HTGSLSYPCTQCPGKFYSAYELRQHVRQHTDE 380
+G + C C F + +H++ HTD
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT 33
Score = 27.8 bits (62), Expect = 0.24
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLS 223
+ C +C FT K +HL ++HT +LS
Sbjct: 8 FVCRICLSAFTTKANCARHL-KVHTDTLS 35
Score = 27.8 bits (62), Expect = 0.24
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLS 354
+ C +C FT K +HL ++HT +LS
Sbjct: 8 FVCRICLSAFTTKANCARHL-KVHTDTLS 35
Score = 24.7 bits (54), Expect = 3.0
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 377 HTDERPFPCPVCQRTFRRKVC 397
+ +RPF C +C F K
Sbjct: 2 SSGKRPFVCRICLSAFTTKAN 22
Score = 24.3 bits (53), Expect = 3.2
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 246 HTDERPFPCPVCQRTFRRK 264
+ +RPF C +C F K
Sbjct: 2 SSGKRPFVCRICLSAFTTK 20
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 29.0 bits (65), Expect = 0.086
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDE 249
Y C +C F + +L +H R HT E
Sbjct: 5 WQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE 38
Score = 29.0 bits (65), Expect = 0.086
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDE 380
Y C +C F + +L +H R HT E
Sbjct: 5 WQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE 38
Score = 28.6 bits (64), Expect = 0.12
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 185 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTG 220
R + Y C CG F+ L++H R HTG
Sbjct: 1 GRSEWQQRERRRYKCDECGKSFSHSSDLSKHR-RTHTG 37
Score = 28.6 bits (64), Expect = 0.12
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 316 ARHVSTHAIQ--YTCHMCGHMFTCKRRLTQHLARLHTG 351
R + Y C CG F+ L++H R HTG
Sbjct: 1 GRSEWQQRERRRYKCDECGKSFSHSSDLSKHR-RTHTG 37
Score = 27.8 bits (62), Expect = 0.21
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 241 QHVRQHTDERPFPCPVCQRTFRRKG 265
+ Q + R + C C ++F
Sbjct: 2 RSEWQQRERRRYKCDECGKSFSHSS 26
Score = 27.8 bits (62), Expect = 0.23
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 372 QHVRQHTDERPFPCPVCQRTFRRK 395
+ Q + R + C C ++F
Sbjct: 2 RSEWQQRERRRYKCDECGKSFSHS 25
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 28.5 bits (64), Expect = 0.099
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 165 RRYVCNHMQCTRRFHSASLLARHVSTHA 192
R YVC C ++F ++ L H+ THA
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTHA 28
Score = 28.5 bits (64), Expect = 0.099
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 296 RRYVCNHMQCTRRFHSASLLARHVSTHA 323
R YVC C ++F ++ L H+ THA
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTHA 28
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 28.4 bits (64), Expect = 0.12
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTG 220
+ C +C F + L +H R HT
Sbjct: 3 FVCEVCTRAFARQEHLKRHY-RSHTN 27
Score = 28.4 bits (64), Expect = 0.12
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTG 351
+ C +C F + L +H R HT
Sbjct: 3 FVCEVCTRAFARQEHLKRHY-RSHTN 27
Score = 26.4 bits (59), Expect = 0.63
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 224 YPCTQCPGKFYSAYELRQHVRQHTDER 250
+ C C F L++H R HT+E+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 26.4 bits (59), Expect = 0.63
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 355 YPCTQCPGKFYSAYELRQHVRQHTDER 381
+ C C F L++H R HT+E+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 28.5 bits (64), Expect = 0.12
Identities = 6/26 (23%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTG 220
+ C C F L++H+ + H
Sbjct: 3 FACPECPKRFMRSDHLSKHI-KTHQN 27
Score = 28.5 bits (64), Expect = 0.12
Identities = 6/26 (23%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTG 351
+ C C F L++H+ + H
Sbjct: 3 FACPECPKRFMRSDHLSKHI-KTHQN 27
Score = 25.8 bits (57), Expect = 1.0
Identities = 7/27 (25%), Positives = 17/27 (62%)
Query: 224 YPCTQCPGKFYSAYELRQHVRQHTDER 250
+ C +CP +F + L +H++ H +++
Sbjct: 3 FACPECPKRFMRSDHLSKHIKTHQNKK 29
Score = 25.8 bits (57), Expect = 1.0
Identities = 7/27 (25%), Positives = 17/27 (62%)
Query: 355 YPCTQCPGKFYSAYELRQHVRQHTDER 381
+ C +CP +F + L +H++ H +++
Sbjct: 3 FACPECPKRFMRSDHLSKHIKTHQNKK 29
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 28.1 bits (63), Expect = 0.13
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 165 RRYVCNHMQCTRRFHSASLLARHVSTH 191
R ++C C +RF + L RH TH
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
Score = 28.1 bits (63), Expect = 0.13
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 296 RRYVCNHMQCTRRFHSASLLARHVSTH 322
R ++C C +RF + L RH TH
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
Score = 23.8 bits (52), Expect = 5.4
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 195 YTCHM--CGHMFTCKRRLTQHLARLHTG 220
+ C CG FT L +H R HTG
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHK-RTHTG 29
Score = 23.8 bits (52), Expect = 5.4
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 326 YTCHM--CGHMFTCKRRLTQHLARLHTG 351
+ C CG FT L +H R HTG
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHK-RTHTG 29
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 28.9 bits (64), Expect = 0.14
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 164 ERRYVCNHMQCTRRFHSASLLARHV--STHAIQYTCHMCGHMFTCKRRLTQHL 214
++ Y C QC + F S RH+ Y C +CG F K L H+
Sbjct: 1 DKLYPC---QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM 50
Score = 28.9 bits (64), Expect = 0.14
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 295 ERRYVCNHMQCTRRFHSASLLARHV--STHAIQYTCHMCGHMFTCKRRLTQHL 345
++ Y C QC + F S RH+ Y C +CG F K L H+
Sbjct: 1 DKLYPC---QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM 50
Score = 28.9 bits (64), Expect = 0.14
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQH 246
Y C CG FT K + +H+ +H G Y C C KF + L H++ H
Sbjct: 4 YPCQ-CGKSFTHKSQRDRHM-SMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 28.9 bits (64), Expect = 0.14
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQH 377
Y C CG FT K + +H+ +H G Y C C KF + L H++ H
Sbjct: 4 YPCQ-CGKSFTHKSQRDRHM-SMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 26.2 bits (57), Expect = 1.2
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 224 YPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRKG 265
YPC QC F + +H+ H RP+ C VC + F+ K
Sbjct: 4 YPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKH 44
Score = 26.2 bits (57), Expect = 1.3
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 355 YPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRK 395
YPC QC F + +H+ H RP+ C VC + F+ K
Sbjct: 4 YPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMK 43
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 28.0 bits (63), Expect = 0.14
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTG 220
+ C +C F+ LT H+ R HTG
Sbjct: 4 FQCRICMRNFSRSDHLTTHI-RTHTG 28
Score = 28.0 bits (63), Expect = 0.14
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTG 351
+ C +C F+ LT H+ R HTG
Sbjct: 4 FQCRICMRNFSRSDHLTTHI-RTHTG 28
Score = 23.7 bits (52), Expect = 5.6
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 164 ERRYVCNHMQCTRRFHSASLLARHVSTH 191
++ + C C R F + L H+ TH
Sbjct: 1 QKPFQCR--ICMRNFSRSDHLTTHIRTH 26
Score = 23.7 bits (52), Expect = 5.6
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 295 ERRYVCNHMQCTRRFHSASLLARHVSTH 322
++ + C C R F + L H+ TH
Sbjct: 1 QKPFQCR--ICMRNFSRSDHLTTHIRTH 26
Score = 23.3 bits (51), Expect = 8.1
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 224 YPCTQCPGKFYSAYELRQHVRQHT 247
+ C C F + L H+R HT
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHT 27
Score = 23.3 bits (51), Expect = 8.1
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 355 YPCTQCPGKFYSAYELRQHVRQHT 378
+ C C F + L H+R HT
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHT 27
Score = 23.0 bits (50), Expect = 8.9
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 249 ERPFPCPVCQRTFRRKG 265
++PF C +C R F R
Sbjct: 1 QKPFQCRICMRNFSRSD 17
Score = 23.0 bits (50), Expect = 9.3
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 380 ERPFPCPVCQRTFRRK 395
++PF C +C R F R
Sbjct: 1 QKPFQCRICMRNFSRS 16
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 27.8 bits (62), Expect = 0.20
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 242 HVRQHTDERPFPCPVCQRTFRRKG 265
R T +PF CP C R+F R
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSD 25
Score = 27.8 bits (62), Expect = 0.24
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 373 HVRQHTDERPFPCPVCQRTFRRK 395
R T +PF CP C R+F R
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRS 24
Score = 26.6 bits (59), Expect = 0.65
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 216 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHT 247
R TG + C C F + L H ++H
Sbjct: 4 RGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM 35
Score = 26.6 bits (59), Expect = 0.65
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 347 RLHTGSLSYPCTQCPGKFYSAYELRQHVRQHT 378
R TG + C C F + L H ++H
Sbjct: 4 RGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM 35
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 26.9 bits (60), Expect = 0.39
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 165 RRYVCNHMQCTRRFHSASLLARHVSTH 191
R Y C C RRF ++ L RH+ H
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIH 27
Score = 26.9 bits (60), Expect = 0.39
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 296 RRYVCNHMQCTRRFHSASLLARHVSTH 322
R Y C C RRF ++ L RH+ H
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIH 27
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 30
Score = 26.9 bits (60), Expect = 0.42
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 165 RRYVCNHMQCTRRFHSASLLARHVSTH 191
+ + C C + + L H+ +H
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSH 27
Score = 26.9 bits (60), Expect = 0.42
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 296 RRYVCNHMQCTRRFHSASLLARHVSTH 322
+ + C C + + L H+ +H
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSH 27
Score = 23.8 bits (52), Expect = 5.5
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 195 YTCH--MCGHMFTCKRRLTQHLARLHTG 220
+ C C ++ L HL R HTG
Sbjct: 3 HKCTFEGCRKSYSRLENLKTHL-RSHTG 29
Score = 23.8 bits (52), Expect = 5.5
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 326 YTCH--MCGHMFTCKRRLTQHLARLHTG 351
+ C C ++ L HL R HTG
Sbjct: 3 HKCTFEGCRKSYSRLENLKTHL-RSHTG 29
>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 53
Score = 27.3 bits (60), Expect = 0.50
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHTGSL 222
C +CG +FT RL QH A+ SL
Sbjct: 7 LPCGLCGKVFTDANRLRQHEAQHGVTSL 34
Score = 27.3 bits (60), Expect = 0.50
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHTGSL 353
C +CG +FT RL QH A+ SL
Sbjct: 7 LPCGLCGKVFTDANRLRQHEAQHGVTSL 34
Score = 26.1 bits (57), Expect = 1.3
Identities = 11/23 (47%), Positives = 11/23 (47%)
Query: 224 YPCTQCPGKFYSAYELRQHVRQH 246
PC C F A LRQH QH
Sbjct: 7 LPCGLCGKVFTDANRLRQHEAQH 29
Score = 26.1 bits (57), Expect = 1.3
Identities = 11/23 (47%), Positives = 11/23 (47%)
Query: 355 YPCTQCPGKFYSAYELRQHVRQH 377
PC C F A LRQH QH
Sbjct: 7 LPCGLCGKVFTDANRLRQHEAQH 29
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 26.5 bits (58), Expect = 0.51
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 249 ERPFPCPVCQRTFRRK 264
E+P+ CPVC F+RK
Sbjct: 1 EKPYSCPVCGLRFKRK 16
Score = 26.5 bits (58), Expect = 0.51
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 380 ERPFPCPVCQRTFRRK 395
E+P+ CPVC F+RK
Sbjct: 1 EKPYSCPVCGLRFKRK 16
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 25.4 bits (56), Expect = 1.2
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 165 RRYVCNHMQCTRRFHSASLLARHVSTH 191
+ + C C +RF L HV H
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIH 27
Score = 25.4 bits (56), Expect = 1.2
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 296 RRYVCNHMQCTRRFHSASLLARHVSTH 322
+ + C C +RF L HV H
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIH 27
>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 26.6 bits (58), Expect = 1.3
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 219 TGSLSYPCTQCPGKFYSAYELRQHVRQHTDE 249
+ +Y C C K S EL H+ H +E
Sbjct: 14 LQNSTYQCKHCDSKLQSTAELTSHLNIHNEE 44
Score = 26.6 bits (58), Expect = 1.3
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 350 TGSLSYPCTQCPGKFYSAYELRQHVRQHTDE 380
+ +Y C C K S EL H+ H +E
Sbjct: 14 LQNSTYQCKHCDSKLQSTAELTSHLNIHNEE 44
>d1ywsa1 g.41.17.1 (A:1-82) Diphthamide biosynthesis protein 3,
DPH3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 82
Score = 26.6 bits (59), Expect = 1.3
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 20 YSLPCVDFIQVHLR-LHSGERRFPCEYCSLLV 50
Y PC D Q++L + GE+ C CSL++
Sbjct: 23 YPCPCGDRFQIYLDDMFEGEKVAVCPSCSLMI 54
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 25.2 bits (56), Expect = 1.4
Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 195 YTCHMCGHMFTCKRRLTQHLARLHT 219
Y C CG F+ L H R+HT
Sbjct: 3 YKCLECGKAFSQNSGLINHQ-RIHT 26
Score = 25.2 bits (56), Expect = 1.4
Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 326 YTCHMCGHMFTCKRRLTQHLARLHT 350
Y C CG F+ L H R+HT
Sbjct: 3 YKCLECGKAFSQNSGLINHQ-RIHT 26
>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 29
Score = 24.7 bits (53), Expect = 2.6
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 167 YVCNHMQCTRRFHSASLLARHVSTHA 192
Y C H C +RF S L RH HA
Sbjct: 4 YECPHEGCDKRFSLPSRLKRHEKVHA 29
Score = 24.7 bits (53), Expect = 2.6
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 298 YVCNHMQCTRRFHSASLLARHVSTHA 323
Y C H C +RF S L RH HA
Sbjct: 4 YECPHEGCDKRFSLPSRLKRHEKVHA 29
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 24.6 bits (53), Expect = 2.7
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 226 CTQCPGKFYSAYELRQHVRQHTDERPF 252
C C F Y L +H H+ E+P+
Sbjct: 8 CEICGKIFRDVYHLNRHKLSHSGEKPY 34
Score = 24.6 bits (53), Expect = 2.7
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 357 CTQCPGKFYSAYELRQHVRQHTDERPF 383
C C F Y L +H H+ E+P+
Sbjct: 8 CEICGKIFRDVYHLNRHKLSHSGEKPY 34
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 24.9 bits (54), Expect = 2.9
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 149 FPQELISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTH 191
P+ I + + + C CT+ F + H+ TH
Sbjct: 2 LPRGSIDKYVKEMPD-KTFECLFPGCTKTFKRRYNIRSHIQTH 43
Score = 24.9 bits (54), Expect = 2.9
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 280 FPQELISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTH 322
P+ I + + + C CT+ F + H+ TH
Sbjct: 2 LPRGSIDKYVKEMPD-KTFECLFPGCTKTFKRRYNIRSHIQTH 43
Score = 23.7 bits (51), Expect = 7.2
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 218 HTGSLSYPCTQCPG--KFYSAYELRQHVRQHTDER 250
++ C F Y +R H++ H ++R
Sbjct: 13 EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 23.7 bits (51), Expect = 7.2
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 349 HTGSLSYPCTQCPG--KFYSAYELRQHVRQHTDER 381
++ C F Y +R H++ H ++R
Sbjct: 13 EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 27
Score = 23.9 bits (51), Expect = 4.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 226 CTQCPGKFYSAYELRQHVRQHTDER 250
C C KF S Y L+ H R+HT E+
Sbjct: 3 CPTCHKKFLSKYYLKVHNRKHTGEK 27
Score = 23.9 bits (51), Expect = 4.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 357 CTQCPGKFYSAYELRQHVRQHTDER 381
C C KF S Y L+ H R+HT E+
Sbjct: 3 CPTCHKKFLSKYYLKVHNRKHTGEK 27
>d1xsoa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {African
clawed frog (Xenopus laevis) [TaxId: 8355]}
Length = 150
Score = 26.6 bits (58), Expect = 4.1
Identities = 18/88 (20%), Positives = 27/88 (30%), Gaps = 11/88 (12%)
Query: 73 HHLKDHVNKIHLHPK---TFSCNSCGQTWLGYTSWKQHVAACREKRRKETFPCKRCDERF 129
L D ++ H+H T C S G + K H A R
Sbjct: 34 EGLTDGLHGFHIHVFGDNTNGCMSAGSHFNPEN--KNHGAPGDTDRHVGDLG------NV 85
Query: 130 STRDGLESFTFSLRLFCLYFPQELISHS 157
+ G+ F + L L P +I +
Sbjct: 86 TAEGGVAQFKITDSLISLKGPNSIIGRT 113
>d1wgea1 g.41.17.1 (A:8-77) DelGEF-interacting protein 1, DelGIP1
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 70
Score = 25.0 bits (55), Expect = 4.1
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 20 YSLPCVDFIQVHLR-LHSGERRFPCEYCSLLV 50
Y PC D + L +GE C CSL++
Sbjct: 24 YPCPCGDNFAITKEDLENGEDVATCPSCSLII 55
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 31
Score = 23.6 bits (51), Expect = 5.5
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 251 PFPCPVCQRTFRRKGL 266
P+PC +C R F R+ L
Sbjct: 1 PYPCGLCNRAFTRRDL 16
>d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase
PepX, middle domain {Lactococcus lactis [TaxId: 1358]}
Length = 405
Score = 26.8 bits (58), Expect = 5.7
Identities = 8/32 (25%), Positives = 11/32 (34%)
Query: 73 HHLKDHVNKIHLHPKTFSCNSCGQTWLGYTSW 104
L D ++L P NS Q W +
Sbjct: 374 AKLLDRDLNLNLPPVILQENSKDQVWTMMNDF 405
>d1iv0a_ c.55.3.8 (A:) Hypothetical protein, YqgF homologue {Thermus
thermophilus [TaxId: 274]}
Length = 98
Score = 25.3 bits (55), Expect = 6.1
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 106 QHVAACREKRRKETFPCKRCDERFSTR 132
V E R + DERF+T+
Sbjct: 72 GKVLPLVEALRARGVEVELWDERFTTK 98
>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 31
Score = 23.3 bits (50), Expect = 8.8
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 165 RRYVCNHMQCTRRFHSASLLARHVS-TH 191
+ Y+C H C++ F +AS A+H + TH
Sbjct: 1 KPYMCEHEGCSKAFSNASDRAKHQNRTH 28
Score = 23.3 bits (50), Expect = 8.8
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 296 RRYVCNHMQCTRRFHSASLLARHVS-TH 322
+ Y+C H C++ F +AS A+H + TH
Sbjct: 1 KPYMCEHEGCSKAFSNASDRAKHQNRTH 28
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.331 0.139 0.476
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,651,704
Number of extensions: 82032
Number of successful extensions: 701
Number of sequences better than 10.0: 1
Number of HSP's gapped: 687
Number of HSP's successfully gapped: 234
Length of query: 410
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 323
Effective length of database: 1,213,086
Effective search space: 391826778
Effective search space used: 391826778
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 54 (25.0 bits)