BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1265
(384 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2TBS2|RM21_BOVIN 39S ribosomal protein L21, mitochondrial OS=Bos taurus GN=MRPL21
PE=1 SV=1
Length = 209
Score = 100 bits (248), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/123 (45%), Positives = 73/123 (59%), Gaps = 1/123 (0%)
Query: 197 VNNQIERNEQGRLFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADF 256
VN I + GRLFA++H Q KVT D+I+++ N G++I+ EKVLLVG DF
Sbjct: 87 VNELIAGGQYGRLFAVVHFASHQWKVTSEDLILIE-NKLDIACGERIRMEKVLLVGADDF 145
Query: 257 TLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEIEII 316
TL+GRPLL LV V T+IEK S R N R RK + R R T++RIN IEI
Sbjct: 146 TLLGRPLLGKDLVRVEATVIEKTESWPRVNMRFQKRKNYKRKRIIVNPQTVLRINTIEIA 205
Query: 317 EKV 319
++
Sbjct: 206 PRL 208
>sp|Q7Z2W9|RM21_HUMAN 39S ribosomal protein L21, mitochondrial OS=Homo sapiens GN=MRPL21
PE=1 SV=2
Length = 205
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 70/119 (58%), Gaps = 1/119 (0%)
Query: 197 VNNQIERNEQGRLFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADF 256
VN I + GRLFA++H RQ KVT D+I++ N G++I+ EKVLLVG +F
Sbjct: 83 VNEMIVTGQYGRLFAVVHFASRQWKVTSEDLILI-GNELDLACGERIRLEKVLLVGADNF 141
Query: 257 TLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEIEI 315
TL+G+PLL LV V T+IEK S R R RK + R T T++RIN IEI
Sbjct: 142 TLLGKPLLGKDLVRVEATVIEKTESWPRIIMRFRKRKNFKKKRIVTTPQTVLRINSIEI 200
>sp|Q9D1N9|RM21_MOUSE 39S ribosomal protein L21, mitochondrial OS=Mus musculus GN=Mrpl21
PE=2 SV=1
Length = 209
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 70/119 (58%), Gaps = 1/119 (0%)
Query: 197 VNNQIERNEQGRLFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADF 256
VN I + GRLFA++H Q KVT D+I+++ N G++I+ EKVLLVG +F
Sbjct: 87 VNELIATGQYGRLFAVVHFASHQWKVTAEDLILIE-NELDIKCGERIRLEKVLLVGADNF 145
Query: 257 TLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEIEI 315
TL+G+PLL LV V T+IEK S + N + RK + + T++RIN IEI
Sbjct: 146 TLLGKPLLRKELVRVEATVIEKTESWPKINMKFRKRKNFRKKKIIVNPQTILRINTIEI 204
>sp|A9M887|RL21_BRUC2 50S ribosomal protein L21 OS=Brucella canis (strain ATCC 23365 /
NCTC 10854) GN=rplU PE=3 SV=1
Length = 142
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 8/105 (7%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
+FA+I G+Q +V ND+I V+ A GD ++F +VL+VG + +G P + L
Sbjct: 1 MFAVIKTGGKQYRVAANDLIKVEK--VAGEAGDIVEFAEVLMVG----STIGAPTVAGAL 54
Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
V T ++E+ F+K R+ R R R +LT IRI+EI
Sbjct: 55 V--TAEVVEQSRGRKVIAFKKRRRQNSKRTRGHRQELTTIRISEI 97
>sp|Q8FYL7|RL21_BRUSU 50S ribosomal protein L21 OS=Brucella suis biovar 1 (strain 1330)
GN=rplU PE=3 SV=1
Length = 142
Score = 58.2 bits (139), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 8/105 (7%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
+FA+I G+Q +V ND+I V+ A GD ++F +VL+VG + +G P + L
Sbjct: 1 MFAVIKTGGKQYRVAANDLIKVEK--VAGEAGDIVEFAEVLMVG----STIGAPTVAGAL 54
Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
V T ++E+ F+K R+ R R R +LT IRI+EI
Sbjct: 55 V--TAEVVEQGRGRKVIAFKKRRRQNSKRTRGHRQELTTIRISEI 97
>sp|A9WWX3|RL21_BRUSI 50S ribosomal protein L21 OS=Brucella suis (strain ATCC 23445 /
NCTC 10510) GN=rplU PE=3 SV=1
Length = 142
Score = 58.2 bits (139), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 8/105 (7%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
+FA+I G+Q +V ND+I V+ A GD ++F +VL+VG + +G P + L
Sbjct: 1 MFAVIKTGGKQYRVAANDLIKVEK--VAGEAGDIVEFAEVLMVG----STIGAPTVAGAL 54
Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
V T ++E+ F+K R+ R R R +LT IRI+EI
Sbjct: 55 V--TAEVVEQGRGRKVIAFKKRRRQNSKRTRGHRQELTTIRISEI 97
>sp|Q8YJ85|RL21_BRUME 50S ribosomal protein L21 OS=Brucella melitensis biotype 1 (strain
16M / ATCC 23456 / NCTC 10094) GN=rplU PE=3 SV=2
Length = 142
Score = 58.2 bits (139), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 8/105 (7%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
+FA+I G+Q +V ND+I V+ A GD ++F +VL+VG + +G P + L
Sbjct: 1 MFAVIKTGGKQYRVAANDLIKVEK--VAGEAGDIVEFAEVLMVG----STIGAPTVAGAL 54
Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
V T ++E+ F+K R+ R R R +LT IRI+EI
Sbjct: 55 V--TAEVVEQGRGRKVIAFKKRRRQNSKRTRGHRQELTTIRISEI 97
>sp|C0RF98|RL21_BRUMB 50S ribosomal protein L21 OS=Brucella melitensis biotype 2 (strain
ATCC 23457) GN=rplU PE=3 SV=1
Length = 142
Score = 58.2 bits (139), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 8/105 (7%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
+FA+I G+Q +V ND+I V+ A GD ++F +VL+VG + +G P + L
Sbjct: 1 MFAVIKTGGKQYRVAANDLIKVEK--VAGEAGDIVEFAEVLMVG----STIGAPTVAGAL 54
Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
V T ++E+ F+K R+ R R R +LT IRI+EI
Sbjct: 55 V--TAEVVEQGRGRKVIAFKKRRRQNSKRTRGHRQELTTIRISEI 97
>sp|Q8VW57|RL21_BRUAB 50S ribosomal protein L21 OS=Brucella abortus biovar 1 (strain
9-941) GN=rplU PE=3 SV=1
Length = 142
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 8/105 (7%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
+FA+I G+Q +V ND+I V+ A GD ++F +VL+VG + +G P + L
Sbjct: 1 MFAVIKTGGKQYRVAANDLIKVEK--VAGEAGDIVEFAEVLMVG----STIGAPTVAGSL 54
Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
V T ++E+ F+K R+ R R R +LT IRI+EI
Sbjct: 55 V--TAEVVEQGRGRKVIAFKKRRRQNSKRTRGHRQELTTIRISEI 97
>sp|Q2YLL7|RL21_BRUA2 50S ribosomal protein L21 OS=Brucella abortus (strain 2308) GN=rplU
PE=3 SV=1
Length = 142
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 8/105 (7%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
+FA+I G+Q +V ND+I V+ A GD ++F +VL+VG + +G P + L
Sbjct: 1 MFAVIKTGGKQYRVAANDLIKVEK--VAGEAGDIVEFAEVLMVG----STIGAPTVAGSL 54
Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
V T ++E+ F+K R+ R R R +LT IRI+EI
Sbjct: 55 V--TAEVVEQGRGRKVIAFKKRRRQNSKRTRGHRQELTTIRISEI 97
>sp|B2S811|RL21_BRUA1 50S ribosomal protein L21 OS=Brucella abortus (strain S19) GN=rplU
PE=3 SV=1
Length = 142
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 8/105 (7%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
+FA+I G+Q +V ND+I V+ A GD ++F +VL+VG + +G P + L
Sbjct: 1 MFAVIKTGGKQYRVAANDLIKVEK--VAGEAGDIVEFAEVLMVG----STIGAPTVAGSL 54
Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
V T ++E+ F+K R+ R R R +LT IRI+EI
Sbjct: 55 V--TAEVVEQGRGRKVIAFKKRRRQNSKRTRGHRQELTTIRISEI 97
>sp|A6WXR6|RL21_OCHA4 50S ribosomal protein L21 OS=Ochrobactrum anthropi (strain ATCC
49188 / DSM 6882 / NCTC 12168) GN=rplU PE=3 SV=1
Length = 129
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 58/105 (55%), Gaps = 8/105 (7%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
+FA+I G+Q +V ND+I V+ A GD ++F +VL+VG + +G P + +
Sbjct: 1 MFAVIKTGGKQYRVAANDLIKVEK--VAGEAGDIVEFAEVLMVG----STIGAPTVAGAI 54
Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
V T ++E+ + F+K R+ R R R +LT IRI+EI
Sbjct: 55 V--TAEVVEQGRARKVIAFKKRRRQNSKRTRGHRQELTTIRISEI 97
>sp|Q54IF0|RM21_DICDI Probable 39S ribosomal protein L21, mitochondrial OS=Dictyostelium
discoideum GN=mrpl21 PE=3 SV=1
Length = 172
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 56/104 (53%), Gaps = 4/104 (3%)
Query: 210 FAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGLV 269
FA++H+ G+Q KV DII+ D G+ I +KVLLVG + T++G+P+++
Sbjct: 62 FAVVHISGKQYKVIEGDIIMTDKIQVDV--GEHIVLDKVLLVGTKNETIIGKPIISN--F 117
Query: 270 NVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
V I E+ + T F+ PRK + R F+ T IRI I
Sbjct: 118 KVHAYIEEQAKTEHVTIFKHKPRKNYKRTTGFQGLATYIRIGGI 161
>sp|A1URM6|RL21_BARBK 50S ribosomal protein L21 OS=Bartonella bacilliformis (strain ATCC
35685 / KC583) GN=rplU PE=3 SV=1
Length = 157
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 56/105 (53%), Gaps = 4/105 (3%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
+FA+I G+Q +V N ++ V+ GD + F VL+VG D ++G P++
Sbjct: 1 MFAVIKTGGKQYRVVANQVLKVEK--IVGNAGDVVNFSDVLMVGEGDNAIIGAPIVADA- 57
Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
+VT II ++ + +F+K R+ R R R ++T +RI EI
Sbjct: 58 -SVTAEIIGQERARKVISFKKRRRQNSKRTRGHRQEITTLRIVEI 101
>sp|Q6G508|RL21_BARHE 50S ribosomal protein L21 OS=Bartonella henselae (strain ATCC 49882
/ Houston 1) GN=rplU PE=3 SV=1
Length = 158
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 4/105 (3%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
+FA+I G+Q +V N ++ V+ GD ++F +L+ G D ++G P++ L
Sbjct: 1 MFAVIKTGGKQYRVVANQVVRVEK--IIGNAGDVVEFNDILMAGQEDNAIIGAPVVRDAL 58
Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
V T IIE+ + F+K R+ R R R ++T +RI EI
Sbjct: 59 V--TAEIIEQARARKVIAFKKRRRQNSKRTRGHRQEVTTLRILEI 101
>sp|Q92LB8|RL21_RHIME 50S ribosomal protein L21 OS=Rhizobium meliloti (strain 1021)
GN=rplU PE=3 SV=1
Length = 123
Score = 53.1 bits (126), Expect = 4e-06, Method: Composition-based stats.
Identities = 34/106 (32%), Positives = 60/106 (56%), Gaps = 6/106 (5%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVG-GADFTLVGRPLLTPG 267
+FA+I G+Q +V ND+I ++ + GDKI+F ++L+VG GAD T +G P +
Sbjct: 1 MFAVIKTGGKQYRVAANDVITIEK--LEGVAGDKIEFTEILMVGVGADAT-IGAPFVEGA 57
Query: 268 LVNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
+ V+ ++++ + F+K R+ R R R T++RI +I
Sbjct: 58 V--VSAEVVDQGRAKKVIAFKKRRRQNSKRSRGHRQHQTIVRILDI 101
>sp|Q8L9A0|RM21_ARATH 50S ribosomal protein L21, mitochondrial OS=Arabidopsis thaliana
GN=RPL21M PE=2 SV=1
Length = 270
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
+FAI+ + Q KV+ D I + F +N DK++ KVLL+G A T++GRP+L
Sbjct: 140 VFAIVQIGSHQFKVSNGDSIFTEKLKFCDIN-DKLELTKVLLLGSASQTIIGRPILPDAT 198
Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEIEIIEK 318
V+ + E L F+K RK + R R R +LT +RI +I+ IEK
Sbjct: 199 VH--AVVEEHALDEKVLIFKKKRRKNYRRTRGHRQELTKLRITDIQGIEK 246
>sp|A6UDV2|RL21_SINMW 50S ribosomal protein L21 OS=Sinorhizobium medicae (strain WSM419)
GN=rplU PE=3 SV=1
Length = 124
Score = 52.8 bits (125), Expect = 4e-06, Method: Composition-based stats.
Identities = 35/106 (33%), Positives = 59/106 (55%), Gaps = 6/106 (5%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVG-GADFTLVGRPLLTPG 267
+FA+I G+Q +V ND+I ++ A GDKI+F ++L+VG GAD T +G P +
Sbjct: 1 MFAVIKTGGKQYRVAANDVITIEKLDGAA--GDKIEFTEILMVGAGADAT-IGAPFVEGA 57
Query: 268 LVNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
+ V+ +++ + F+K R+ R R R T++RI +I
Sbjct: 58 V--VSAEVVDHGRAKKVIAFKKRRRQNSKRTRGHRQHHTIVRILDI 101
>sp|Q6G0T8|RL21_BARQU 50S ribosomal protein L21 OS=Bartonella quintana (strain Toulouse)
GN=rplU PE=3 SV=1
Length = 163
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 57/105 (54%), Gaps = 4/105 (3%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
+FA+I G+Q V N ++ V+ GD ++F +L+VG D T++G P++ L
Sbjct: 1 MFAVIKTGGKQYHVVANQVVKVEK--VIGNAGDVVEFNDILMVGQEDNTIIGAPVVADAL 58
Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
VT II++ + +F+K R+ R R ++T++RI EI
Sbjct: 59 --VTAEIIKQARARKVISFKKRRRQNSKCTRGHRQEVTILRILEI 101
>sp|B3PRY8|RL21_RHIE6 50S ribosomal protein L21 OS=Rhizobium etli (strain CIAT 652)
GN=rplU PE=3 SV=1
Length = 105
Score = 52.4 bits (124), Expect = 5e-06, Method: Composition-based stats.
Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 4/105 (3%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
+FA+I G+Q +V ND++ ++ A GD I+F +VL++G +G P +T
Sbjct: 1 MFAVIKTGGKQYRVAANDVLTIEKLEAAA--GDSIEFTEVLVIGEGADAAIGAPFVTGA- 57
Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
+V ++E++ F+K R+ R R R T++RI +I
Sbjct: 58 -SVKAEVVEQNRGKKVIAFKKRRRQNSKRSRGHRQHHTVVRITDI 101
>sp|Q5LRY0|RL21_RUEPO 50S ribosomal protein L21 OS=Ruegeria pomeroyi (strain ATCC 700808
/ DSM 15171 / DSS-3) GN=rplU PE=3 SV=1
Length = 193
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 60/107 (56%), Gaps = 8/107 (7%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
+FA++ G+Q KV D++ V+ A G+K++F VL++GG D +VG PL+
Sbjct: 1 MFAVLKTGGKQYKVQAGDVLRVEK--LAADAGEKVQFNDVLMLGG-DAPVVGAPLVDGAA 57
Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHT--RFRFFRTQLTMIRINEI 313
V +I++ +F K R++H+ R + R +LT++RI EI
Sbjct: 58 VQA--EVIDQIKGEKLIHFVK-RRRKHSSQRTKGHRQKLTLVRITEI 101
>sp|Q0BRF1|RL21_GRABC 50S ribosomal protein L21 OS=Granulibacter bethesdensis (strain
ATCC BAA-1260 / CGDNIH1) GN=rplU PE=3 SV=2
Length = 104
Score = 51.6 bits (122), Expect = 9e-06, Method: Composition-based stats.
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 4/105 (3%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
+FA+I G+Q +VTPN ++ V+ P G I F VL VGG +G P++
Sbjct: 1 MFAVIRTGGKQYRVTPNAVLKVEKLEAEP--GSTITFTDVLAVGGEGNLTIGAPVVAGA- 57
Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
+VT T+I +D F+K R+ R R +T++R+ +I
Sbjct: 58 -SVTATVIAQDRLDKIVVFKKRRRQNSRRKNGHRQHVTVLRVGDI 101
>sp|Q605N4|RL21_METCA 50S ribosomal protein L21 OS=Methylococcus capsulatus (strain ATCC
33009 / NCIMB 11132 / Bath) GN=rplU PE=3 SV=1
Length = 103
Score = 51.6 bits (122), Expect = 9e-06, Method: Composition-based stats.
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 16/111 (14%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
++A+I G+Q +V P D + V+S G ++ FEKVLL+ D +G+P ++ G
Sbjct: 1 MYAVIQTGGKQYRVQPGDKVKVES--LDAEAGQEVAFEKVLLIQSDDGVKIGQPFVSGG- 57
Query: 269 VNVTGTIIEKDLSHTR------TNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
VTGT++ +H R FR+ RK H + R T ++INEI
Sbjct: 58 -KVTGTVV----AHGRHPKIRIIKFRR--RKHHMKQAGHRQNYTEVQINEI 101
>sp|B5ZUD8|RL21_RHILW 50S ribosomal protein L21 OS=Rhizobium leguminosarum bv. trifolii
(strain WSM2304) GN=rplU PE=3 SV=1
Length = 105
Score = 51.6 bits (122), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 4/105 (3%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
+FA+I G+Q +V ND++ ++ GD I+F +VL++G +G P +T
Sbjct: 1 MFAVIKTGGKQYRVAANDVLTIEK--LEATAGDSIEFTEVLVIGEGADAAIGAPFVTGA- 57
Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
+V ++E++ F+K R+ R R R T++RI +I
Sbjct: 58 -SVKAEVVEQNRGKKVIAFKKRRRQNSKRSRGHRQHHTVVRITDI 101
>sp|Q1MA81|RL21_RHIL3 50S ribosomal protein L21 OS=Rhizobium leguminosarum bv. viciae
(strain 3841) GN=rplU PE=3 SV=1
Length = 105
Score = 51.6 bits (122), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 4/105 (3%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
+FA+I G+Q +V ND++ ++ GD I+F +VL++G +G P +T
Sbjct: 1 MFAVIKTGGKQYRVAANDVLTIEK--LEATAGDSIEFTEVLVIGEGADAAIGAPFVTGA- 57
Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
+V ++E++ F+K R+ R R R T++RI +I
Sbjct: 58 -SVKAEVVEQNRGKKVIAFKKRRRQNSKRSRGHRQHHTVVRITDI 101
>sp|A3PQI7|RL21_RHOS1 50S ribosomal protein L21 OS=Rhodobacter sphaeroides (strain ATCC
17029 / ATH 2.4.9) GN=rplU PE=3 SV=1
Length = 131
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
+FA++ G+Q KV D++ V+ A GDKI+F +L+VGG D VG P +
Sbjct: 1 MFAVLKTGGKQYKVQAGDVLRVEK--LACEAGDKIQFNDILMVGG-DSVTVGAPFVAGAA 57
Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHT-RFRFFRTQLTMIRINEI 313
V +I + ++ K RK + R + R QLT++R+ ++
Sbjct: 58 VQA--EVIAQIKGEKTIHYVKRRRKHSSQRTKGHRQQLTLLRVTDV 101
>sp|B2IE47|RL21_BEII9 50S ribosomal protein L21 OS=Beijerinckia indica subsp. indica
(strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rplU PE=3
SV=1
Length = 103
Score = 51.6 bits (122), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
+FA+I G+Q V +DII V + P GD + F+ VL++ G +G P +
Sbjct: 1 MFAVIKTGGKQYSVAADDIITVMTLQGEP--GDAVTFDSVLMLAGEGEPKIGAPFIAGA- 57
Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
V+G I+E+ +F+K R+ R R R LT+++I I
Sbjct: 58 -TVSGEIVEQTRGPKVISFKKRRRQNSKRKRGHRQDLTLVKITGI 101
>sp|B9KW01|RL21_RHOSK 50S ribosomal protein L21 OS=Rhodobacter sphaeroides (strain KD131
/ KCTC 12085) GN=rplU PE=3 SV=1
Length = 131
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
+FA++ G+Q KV D++ V+ A GDKI+F +L+VGG D VG P +
Sbjct: 1 MFAVLKTGGKQYKVQAGDVLRVEK--LACEAGDKIQFNDILMVGG-DSVTVGAPFVAGAA 57
Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHT-RFRFFRTQLTMIRINEI 313
V +I + ++ K RK + R + R QLT++R+ ++
Sbjct: 58 VQA--EVIAQIKGEKTIHYVKRRRKHSSQRTKGHRQQLTLLRVTDV 101
>sp|Q3IXY2|RL21_RHOS4 50S ribosomal protein L21 OS=Rhodobacter sphaeroides (strain ATCC
17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rplU PE=3 SV=1
Length = 131
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
+FA++ G+Q KV D++ V+ A GDKI+F +L+VGG D VG P +
Sbjct: 1 MFAVLKTGGKQYKVQAGDVLRVEK--LACEAGDKIQFNDILMVGG-DSVTVGAPFVAGAA 57
Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHT-RFRFFRTQLTMIRINEI 313
V +I + ++ K RK + R + R QLT++R+ ++
Sbjct: 58 VQA--EVIAQIKGEKTIHYVKRRRKHSSQRTKGHRQQLTLLRVTDV 101
>sp|C3M9X5|RL21_RHISN 50S ribosomal protein L21 OS=Rhizobium sp. (strain NGR234) GN=rplU
PE=3 SV=1
Length = 123
Score = 51.2 bits (121), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/106 (31%), Positives = 60/106 (56%), Gaps = 6/106 (5%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVG-GADFTLVGRPLLTPG 267
+FA+I G+Q +V +D+I ++ + GDKI+F ++L+VG GAD T +G P +
Sbjct: 1 MFAVIKTGGKQYRVAADDVITIEK--LEGVAGDKIEFTEILMVGVGADAT-IGAPFVEGA 57
Query: 268 LVNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
+ V+ ++++ + F+K R+ R R R T++RI +I
Sbjct: 58 V--VSAEVVDQGRAKKVIAFKKRRRQNSKRSRGHRQHQTVVRILDI 101
>sp|B8EQH7|RL21_METSB 50S ribosomal protein L21 OS=Methylocella silvestris (strain BL2 /
DSM 15510 / NCIMB 13906) GN=rplU PE=3 SV=1
Length = 125
Score = 50.8 bits (120), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
+FA+I G+Q V+ +D I V + GD + F+ VL+ GG + +G P +
Sbjct: 1 MFAVIKTGGKQYNVSADDTITV--MALPGEKGDAVSFDTVLMFGGEGQSTLGAPFIEGA- 57
Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
+V G I+E+ +F+K R+ R R R LT++RI +
Sbjct: 58 -SVVGEIVEQKRGPKVISFKKRRRQNSKRKRGHRQDLTLVRITSL 101
>sp|A9VYM8|RL21_METEP 50S ribosomal protein L21 OS=Methylobacterium extorquens (strain
PA1) GN=rplU PE=3 SV=1
Length = 130
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
+FA+I G+Q +V ND+I V + G + F VLL D T VG PLL+
Sbjct: 1 MFAVIKTGGKQYRVAANDVITV--ATLEGEAGAAVTFGDVLLFTDGDATQVGTPLLSG-- 56
Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
+ VTG I++ + F+K R+ R R R T++RI EI
Sbjct: 57 IGVTGEIVQHGRTRKVIAFKKRRRQNSRRRRGHRQDFTVVRITEI 101
>sp|B7KSH4|RL21_METC4 50S ribosomal protein L21 OS=Methylobacterium chloromethanicum
(strain CM4 / NCIMB 13688) GN=rplU PE=3 SV=1
Length = 130
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
+FA+I G+Q +V ND+I V + G + F VLL D T VG PLL+
Sbjct: 1 MFAVIKTGGKQYRVAANDVITV--ATLEGEAGAAVTFGDVLLFTDGDATQVGTPLLSG-- 56
Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
+ VTG I++ + F+K R+ R R R T++RI EI
Sbjct: 57 IGVTGEIVQHGRTRKVIAFKKRRRQNSRRRRGHRQDFTVVRITEI 101
>sp|A8F8P9|RL21_THELT 50S ribosomal protein L21 OS=Thermotoga lettingae (strain ATCC
BAA-301 / DSM 14385 / TMO) GN=rplU PE=3 SV=1
Length = 107
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
++AII G+Q KV+ D I V+ S G++I FE++L + +G+P +
Sbjct: 1 MYAIIETGGKQYKVSEGDTIAVEKLSVK--QGEQIVFERILHLSTDGTVKIGQPYVEG-- 56
Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEIEI 315
V GT++ + + + PRK + R R R ++++I++IEI
Sbjct: 57 CTVKGTVLSHERARKVVVVKYRPRKNYRRERGHRQWFSLVKIDKIEI 103
>sp|A0LCZ5|RL21_MAGSM 50S ribosomal protein L21 OS=Magnetococcus sp. (strain MC-1)
GN=rplU PE=3 SV=1
Length = 101
Score = 49.7 bits (117), Expect = 4e-05, Method: Composition-based stats.
Identities = 37/105 (35%), Positives = 58/105 (55%), Gaps = 5/105 (4%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
++A+I G+Q KV+ D++ V++ A G ++ F+ VL+VGG + VG T G
Sbjct: 1 MYAVIRTGGKQYKVSQGDVLRVET--VAGDAGGEVIFDDVLMVGGDEGLKVGEA--TEG- 55
Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
VTGTII + F+K RK + R + R LT++RI+ I
Sbjct: 56 AKVTGTIIRQMRDKKVIVFKKKRRKNYIRTQGHRQNLTVVRISGI 100
>sp|A1B9H5|RL21_PARDP 50S ribosomal protein L21 OS=Paracoccus denitrificans (strain Pd
1222) GN=rplU PE=3 SV=1
Length = 140
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 69/124 (55%), Gaps = 21/124 (16%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDS-NSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPG 267
+FA++ G+Q +V D++ V+ N+ A GDK++F VL++G A VG PL+
Sbjct: 1 MFAVLKTGGKQYRVQAGDVLRVEKLNAEA---GDKVQFNDVLMIGSA----VGAPLVAGA 53
Query: 268 LVN--VTGTI-IEKDLSHTRTNFRKIPRKRHT--RFRFFRTQLTMIRINEIEIIEKVGQR 322
V V TI +K +++ + R++H+ R R R QLT++RI +++EK G +
Sbjct: 54 AVQAEVIDTIKADKVITYVKR------RRKHSSQRTRGHRQQLTLVRIT--DLLEKGGDK 105
Query: 323 KDVE 326
V+
Sbjct: 106 SGVK 109
>sp|A9H0E5|RL21_GLUDA 50S ribosomal protein L21 OS=Gluconacetobacter diazotrophicus
(strain ATCC 49037 / DSM 5601 / PAl5) GN=rplU PE=3 SV=1
Length = 104
Score = 48.9 bits (115), Expect = 7e-05, Method: Composition-based stats.
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
+FA+I G+Q +V+P+ ++ V+ G + F VL VGG T +G PL+
Sbjct: 1 MFAVIRTGGKQYRVSPDTVLKVEK--LDAEAGATVTFTDVLAVGGESGTTIGAPLVAGA- 57
Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
VT T+I +D T F+K R+ R R +T++RI I
Sbjct: 58 -TVTATVIAQDRLDTVIIFKKRRRQNSRRKNGHRQPVTVLRIAAI 101
>sp|B9JEQ7|RL21_AGRRK 50S ribosomal protein L21 OS=Agrobacterium radiobacter (strain K84
/ ATCC BAA-868) GN=rplU PE=3 SV=1
Length = 105
Score = 48.1 bits (113), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
+FA+I G+Q +V ND++ ++ + GD ++F +VL++G +G P +
Sbjct: 1 MFAVIKTGGKQYRVAANDVLTIE--KLEVVAGDTVEFTEVLVIGEGADAAIGAPFVKGA- 57
Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
+V ++E + F+K R+ R R R T++RI +I
Sbjct: 58 -SVKAEVVEHNRGKKVIAFKKRRRQNSKRSRGHRQHHTVVRITDI 101
>sp|A5EVQ9|RL21_DICNV 50S ribosomal protein L21 OS=Dichelobacter nodosus (strain
VCS1703A) GN=rplU PE=3 SV=1
Length = 106
Score = 48.1 bits (113), Expect = 1e-04, Method: Composition-based stats.
Identities = 38/106 (35%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
+FA+I G+Q KV P + V+S A GDKI F+KVLLV + VG P + G
Sbjct: 1 MFAVIETGGKQYKVKPGQRLRVES--LAGEVGDKIAFDKVLLVAAGEEVSVGAPYVAGGS 58
Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHTRFR-FFRTQLTMIRINEI 313
V T I H + K R++H+ R R T I I+ I
Sbjct: 59 VQAT---IANHGRHKKVTIIKFRRRKHSMKRQGHRQNYTEIVIDTI 101
>sp|A9IM54|RL21_BART1 50S ribosomal protein L21 OS=Bartonella tribocorum (strain CIP
105476 / IBS 506) GN=rplU PE=3 SV=1
Length = 158
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 10/108 (9%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVD---SNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLT 265
+FA+I G+Q ++ N ++ V+ N+ GD ++F VL+VG ++G P++
Sbjct: 1 MFAVIKTGGKQYRIVANQVVKVEKVIGNA-----GDVVEFNDVLMVGQEGSAVIGTPVVA 55
Query: 266 PGLVNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
VT I+E+ F+K R+ R R R + T +R+ EI
Sbjct: 56 D--ARVTAEILEQARGRKVIAFKKRRRQNSKRTRGHRQEFTTLRVLEI 101
>sp|Q9ABB2|RL21_CAUCR 50S ribosomal protein L21 OS=Caulobacter crescentus (strain ATCC
19089 / CB15) GN=rplU PE=3 SV=1
Length = 171
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
++A+I G+Q +V D+++V+ P G + F +VL++G + VG P + +
Sbjct: 1 MYAVIKTGGKQYRVQAGDLLVVEKLEGEP--GAAVAFGEVLMLGEGEAVTVGAPTVDGAV 58
Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEIEIIEKVGQRKDVEGT 328
V+ GT++E F+KI R+ + R R R +++R+ + G+ EGT
Sbjct: 59 VS--GTLLETRKGEKVKIFKKIRRQGYRRTRGHRQFESVVRVTS---VAGAGKEAKWEGT 113
>sp|Q165Y2|RL21_ROSDO 50S ribosomal protein L21 OS=Roseobacter denitrificans (strain ATCC
33942 / OCh 114) GN=rplU PE=3 SV=2
Length = 216
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 58/106 (54%), Gaps = 6/106 (5%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
+FA++ G+Q KV D++ V+ A G+ ++F +VL++GG + T+VG P +
Sbjct: 1 MFAVLKTGGKQYKVQAGDMLRVE--KLAADAGETVQFNEVLMLGGEN-TVVGAPFVKD-- 55
Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHT-RFRFFRTQLTMIRINEI 313
V ++++ NF K RK + R + R +LT++++ +I
Sbjct: 56 AGVQAEVVDQIKGEKVINFVKRRRKHSSKRTKGHRQKLTLVKVTDI 101
>sp|Q5FUL4|RL21_GLUOX 50S ribosomal protein L21 OS=Gluconobacter oxydans (strain 621H)
GN=rplU PE=3 SV=1
Length = 104
Score = 47.8 bits (112), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
++A+I G+Q +V P I+ V+ G I F VL+VGG VG PL+
Sbjct: 1 MYAVIRTGGKQYRVAPESILKVEK--LEAEAGSTITFTDVLMVGGEGTLTVGAPLVAGA- 57
Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
VT T++ +D F+K R+ R R +T++RIN I
Sbjct: 58 -TVTATVVAQDRLPKVIIFKKRRRQNSRRKNGHRQPVTVLRINAI 101
>sp|Q1GHD3|RL21_RUEST 50S ribosomal protein L21 OS=Ruegeria sp. (strain TM1040) GN=rplU
PE=3 SV=1
Length = 198
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 57/107 (53%), Gaps = 8/107 (7%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
+FA++ G+Q KV D++ V+ A G+ ++F VL++GG D +VG P ++
Sbjct: 1 MFAVLKTGGKQYKVQAGDMLRVE--KLAADAGETVQFNDVLMIGG-DAPVVGAPFVSGAA 57
Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFF--RTQLTMIRINEI 313
V ++E+ F K R++H+ R R +LT+++I EI
Sbjct: 58 VQA--EVVEQIKGDKVIKFVK-RRRKHSSKRTVGHRQKLTLVKITEI 101
>sp|Q2K2Y1|RL21_RHIEC 50S ribosomal protein L21 OS=Rhizobium etli (strain CFN 42 / ATCC
51251) GN=rplU PE=3 SV=1
Length = 105
Score = 47.4 bits (111), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
+FA+I G+Q +V ND++ ++ GD I+F +VL++G +G P +
Sbjct: 1 MFAVIKTGGKQYRVAANDVLTIE--KLEASAGDSIEFTEVLVIGEGADAAIGAPFVAGA- 57
Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
+V ++++ F+K R+ R R R T++RI +I
Sbjct: 58 -SVKAEVVDQTRGKKVIAFKKRRRQNSKRSRGHRQHHTVVRITDI 101
>sp|B9LJ76|RL21_CHLSY 50S ribosomal protein L21 OS=Chloroflexus aurantiacus (strain ATCC
29364 / DSM 637 / Y-400-fl) GN=rplU PE=3 SV=1
Length = 103
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
++AII G Q +V P ++ +D S P G +I+ +VLLVG A+ VG PL+ +
Sbjct: 1 MYAIIRDRGMQYRVEPGQVLTIDLISAEP--GSQIELGEVLLVGDAEQVKVGSPLVEGAV 58
Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
V ++ + FR + R+ R R + T IRI+EI
Sbjct: 59 VR--AEVLGEQKGDKIVVFRYRNKTRYRRRTGHRQRYTKIRISEI 101
>sp|A9WGJ5|RL21_CHLAA 50S ribosomal protein L21 OS=Chloroflexus aurantiacus (strain ATCC
29366 / DSM 635 / J-10-fl) GN=rplU PE=3 SV=1
Length = 103
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
++AII G Q +V P ++ +D S P G +I+ +VLLVG A+ VG PL+ +
Sbjct: 1 MYAIIRDRGMQYRVEPGQVLTIDLISAEP--GSQIELGEVLLVGDAEQVKVGSPLVEGAV 58
Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
V ++ + FR + R+ R R + T IRI+EI
Sbjct: 59 VR--AEVLGEQKGDKIVVFRYRNKTRYRRRTGHRQRYTKIRISEI 101
>sp|B2A6B3|RL21_NATTJ 50S ribosomal protein L21 OS=Natranaerobius thermophilus (strain
ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=rplU PE=3
SV=1
Length = 105
Score = 47.0 bits (110), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/107 (27%), Positives = 58/107 (54%), Gaps = 4/107 (3%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
++A+I G+Q KV+ D++ ++ + +++ F+KVLLV + VG P+L
Sbjct: 1 MYAVIETGGKQYKVSEGDVLEIEK--LSQETEEQVTFDKVLLVKDDENVKVGTPVLEEA- 57
Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEIEI 315
V GT++E T F+ P+K + R + R + ++I++I++
Sbjct: 58 -QVEGTVLEHGKGEKVTVFKYKPKKNYRRKQGHRQPFSKVKIDKIKL 103
>sp|B7ICN4|RL21_THEAB 50S ribosomal protein L21 OS=Thermosipho africanus (strain TCF52B)
GN=rplU PE=3 SV=1
Length = 106
Score = 47.0 bits (110), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGAD-FTLVGRPLLTPG 267
++AI+ G+Q +V P + + G+++K +KVL+V D LVG+P L
Sbjct: 1 MYAIVESGGKQFRVEPGKVFFTE-RVVGKGEGEEVKLDKVLMVKTDDGKVLVGKPYLEN- 58
Query: 268 LVNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEIEI 315
V + GTI+E + + PRK + R + R T I++ EI++
Sbjct: 59 -VEIKGTIVEHGRARKVIVGKFRPRKNYRRIKGHRQWYTAIKVEEIQV 105
>sp|A7HT70|RL21_PARL1 50S ribosomal protein L21 OS=Parvibaculum lavamentivorans (strain
DS-1 / DSM 13023 / NCIMB 13966) GN=rplU PE=3 SV=1
Length = 103
Score = 45.4 bits (106), Expect = 7e-04, Method: Composition-based stats.
Identities = 36/106 (33%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTL-VGRPLLTPG 267
+FA+I G+Q +V +D++ V+ N GDKI E VL++GG TL VG PL+
Sbjct: 1 MFAVIRTGGKQYRVAKDDVLEVERNGGEA--GDKIDLE-VLMLGGEGGTLKVGAPLVDGA 57
Query: 268 LVNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
V I+E T F+K R+ + R R L +++I +I
Sbjct: 58 --KVKAEIVEHTRGPKITIFKKRRRQNYRRKNGHRQDLMLVKILDI 101
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 138,826,868
Number of Sequences: 539616
Number of extensions: 5863411
Number of successful extensions: 12602
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 399
Number of HSP's that attempted gapping in prelim test: 12402
Number of HSP's gapped (non-prelim): 408
length of query: 384
length of database: 191,569,459
effective HSP length: 119
effective length of query: 265
effective length of database: 127,355,155
effective search space: 33749116075
effective search space used: 33749116075
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)