Query psy1265
Match_columns 384
No_of_seqs 148 out of 1125
Neff 3.1
Searched_HMMs 29240
Date Fri Aug 16 16:02:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1265.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1265hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r8s_R 50S ribosomal protein L 100.0 1.7E-39 5.8E-44 270.8 13.3 102 209-314 1-102 (103)
2 3v2d_V 50S ribosomal protein L 100.0 2.3E-38 7.9E-43 263.5 13.3 100 209-314 1-100 (101)
3 2zjr_O 50S ribosomal protein L 100.0 5.1E-38 1.7E-42 260.7 3.0 99 209-314 1-99 (100)
4 3bbo_T Ribosomal protein L21; 100.0 1E-38 3.4E-43 300.7 -3.7 136 204-346 119-254 (257)
5 2ozj_A Cupin 2, conserved barr 44.2 23 0.0008 26.9 4.0 22 211-232 69-90 (114)
6 4i4a_A Similar to unknown prot 40.8 28 0.00095 26.9 4.0 22 211-232 65-86 (128)
7 1v70_A Probable antibiotics sy 38.4 35 0.0012 24.6 4.0 21 212-232 61-81 (105)
8 2arc_A ARAC, arabinose operon 38.1 32 0.0011 27.1 4.0 22 211-232 49-70 (164)
9 3lwc_A Uncharacterized protein 36.2 36 0.0012 27.4 4.1 22 211-232 70-91 (119)
10 3d82_A Cupin 2, conserved barr 35.9 26 0.00089 25.6 2.9 22 211-232 61-82 (102)
11 2gu9_A Tetracenomycin polyketi 35.4 35 0.0012 25.2 3.6 21 212-232 56-76 (113)
12 3fjs_A Uncharacterized protein 35.3 33 0.0011 26.8 3.6 21 212-232 68-88 (114)
13 2ivw_A PILP pilot protein; lip 34.9 34 0.0012 28.8 3.8 24 207-230 37-60 (113)
14 2opk_A Hypothetical protein; p 34.7 24 0.00081 27.8 2.7 22 211-232 64-87 (112)
15 2y4x_A PILP protein; biosynthe 33.8 41 0.0014 27.3 4.0 25 207-231 34-58 (93)
16 3cew_A Uncharacterized cupin p 33.4 37 0.0013 26.4 3.6 22 211-232 59-80 (125)
17 4axo_A EUTQ, ethanolamine util 33.3 70 0.0024 27.6 5.7 22 211-232 95-116 (151)
18 2pfw_A Cupin 2, conserved barr 33.0 45 0.0016 25.1 4.0 21 212-232 66-86 (116)
19 2lc4_A PILP protein; type IV p 32.9 41 0.0014 28.3 3.9 25 207-231 41-65 (111)
20 1o5u_A Novel thermotoga mariti 32.6 41 0.0014 26.5 3.7 22 211-232 60-82 (101)
21 1yhf_A Hypothetical protein SP 30.9 51 0.0018 24.8 4.0 22 211-232 71-92 (115)
22 2pyt_A Ethanolamine utilizatio 30.2 50 0.0017 27.2 4.1 22 211-232 86-107 (133)
23 3l2h_A Putative sugar phosphat 29.4 52 0.0018 26.8 4.0 21 212-232 80-100 (162)
24 2wg5_A General control protein 29.2 25 0.00084 28.9 2.0 33 211-247 52-85 (109)
25 2i45_A Hypothetical protein; n 28.4 47 0.0016 25.0 3.4 22 211-232 59-81 (107)
26 1o4t_A Putative oxalate decarb 27.7 51 0.0017 26.3 3.6 22 211-232 89-110 (133)
27 3kgz_A Cupin 2 conserved barre 27.6 55 0.0019 27.6 4.0 22 211-232 75-96 (156)
28 4h7l_A Uncharacterized protein 27.4 33 0.0011 30.2 2.6 21 212-232 80-100 (157)
29 2out_A MU-like prophage flumu 27.4 19 0.00064 31.5 1.0 25 331-355 86-112 (131)
30 3ibm_A Cupin 2, conserved barr 26.9 58 0.002 27.5 4.0 22 211-232 87-108 (167)
31 4e2g_A Cupin 2 conserved barre 26.6 57 0.002 25.0 3.6 21 212-232 73-93 (126)
32 2o8q_A Hypothetical protein; c 25.1 65 0.0022 25.1 3.7 22 211-232 75-97 (134)
33 4av2_M PILP protein, type IV p 25.1 61 0.0021 28.9 3.9 25 206-230 104-128 (181)
34 3h8u_A Uncharacterized conserv 24.9 50 0.0017 25.4 3.0 23 211-233 71-94 (125)
35 2vpv_A Protein MIF2, MIF2P; nu 24.4 68 0.0023 28.1 4.1 20 213-232 123-142 (166)
36 1y9q_A Transcriptional regulat 24.1 69 0.0023 26.8 3.9 21 212-232 138-158 (192)
37 2b8m_A Hypothetical protein MJ 23.9 44 0.0015 25.5 2.5 22 211-232 58-80 (117)
38 3jzv_A Uncharacterized protein 22.1 81 0.0028 26.9 4.0 21 212-232 85-105 (166)
39 3ht1_A REMF protein; cupin fol 21.8 66 0.0023 25.0 3.1 21 212-232 71-93 (145)
40 2q30_A Uncharacterized protein 21.6 48 0.0017 24.5 2.2 21 212-232 67-88 (110)
41 1sef_A Conserved hypothetical 21.3 79 0.0027 28.5 4.0 22 211-232 214-235 (274)
42 4e2q_A Ureidoglycine aminohydr 21.2 77 0.0026 29.8 4.0 22 211-232 218-239 (266)
43 1vj2_A Novel manganese-contain 20.8 63 0.0021 25.3 2.8 22 211-232 79-100 (126)
No 1
>3r8s_R 50S ribosomal protein L21; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1vs8_R 1vs6_R 2aw4_R 2awb_R 1vt2_R 2i2v_R 2j28_R 2i2t_R* 2qao_R* 2qba_R* 2qbc_R* 2qbe_R 2qbg_R 2qbi_R* 2qbk_R* 2qov_R 2qox_R 2qoz_R* 2qp1_R* 2rdo_R ...
Probab=100.00 E-value=1.7e-39 Score=270.82 Aligned_cols=102 Identities=16% Similarity=0.325 Sum_probs=100.2
Q ss_pred eEEEEEECCEEEEEccCCEEEEcCCCCCCCCCCeEEeceEEEEeCCCceEEcccccCCceeEEEEEEEeeecCCeeEEEE
Q psy1265 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFR 288 (384)
Q Consensus 209 MYAIVeIGGKQYKVt~GDvI~VEr~ll~aevGDkI~LdKVLLVGs~d~TlIGrPyLega~AkVeAtVVEh~KgkKViVFK 288 (384)
|||||++|||||||++||+|.||+ +++++||+|.|++|||+++++++.+|+|+|++ |+|+|+|++|++++|+++||
T Consensus 1 MyAIi~~gGkQykV~~Gd~i~vek--l~~~~G~~v~~~~VLlv~~~~~~~iG~P~v~~--a~V~a~V~~~~k~~Kv~vfK 76 (103)
T 3r8s_R 1 MYAVFQSGGKQHRVSEGQTVRLEK--LDIATGETVEFAEVLMIANGEEVKIGVPFVDG--GVIKAEVVAHGRGEKVKIVK 76 (103)
T ss_dssp CEEEEECSSSEEEEETTCEEEESC--CCSCTTCEEEECCEEEEESSSEEECSSSSCTT--CEEEEEEEEEEECCCEEEEE
T ss_pred CEEEEEECCEEEEEeCCCEEEECC--cCCCCCCEEEEeEEEEEecCCCEEECCcccCC--cEEEEEEEeccCCCcEEEEE
Confidence 999999999999999999999999 78999999999999999999999999999999 89999999999999999999
Q ss_pred eCCCCCcccccCccCcceEEEEeEEE
Q psy1265 289 KIPRKRHTRFRFFRTQLTMIRINEIE 314 (384)
Q Consensus 289 kKRRKrYRRk~GHRQ~yTrLRIteI~ 314 (384)
|||||+|+|++||||+||+|+|++|.
T Consensus 77 ~krrK~yrrk~GHRQ~~T~l~I~~I~ 102 (103)
T 3r8s_R 77 FRRRKHYRKQQGHRQWFTDVKITGIS 102 (103)
T ss_dssp EETTTTEEEEEEECCEEEEEEEEEEE
T ss_pred ecCCCCccCCCcccCCeEEEEEEEEE
Confidence 99999999999999999999999996
No 2
>3v2d_V 50S ribosomal protein L21; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_P 2hgj_U 2hgq_U 2hgu_U 1vsa_P 2j03_V 2jl6_V 2jl8_V 2v47_V 2v49_V 2wdi_V 2wdj_V 2wdl_V 2wdn_V 2wh2_V 2wh4_V 2wrj_V 2wrl_V 2wro_V 2wrr_V ...
Probab=100.00 E-value=2.3e-38 Score=263.52 Aligned_cols=100 Identities=25% Similarity=0.391 Sum_probs=96.9
Q ss_pred eEEEEEECCEEEEEccCCEEEEcCCCCCCCCCCeEEeceEEEEeCCCceEEcccccCCceeEEEEEEEeeecCCeeEEEE
Q psy1265 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFR 288 (384)
Q Consensus 209 MYAIVeIGGKQYKVt~GDvI~VEr~ll~aevGDkI~LdKVLLVGs~d~TlIGrPyLega~AkVeAtVVEh~KgkKViVFK 288 (384)
|||||++|||||||++||+|.||+ +++++||+|.|+ |||+++++ +.+|+|+|++ |+|+|+|++|++++|+++||
T Consensus 1 MyAIi~~gGkQykV~~Gd~i~vek--l~~~~G~~v~~~-VLlv~~~~-~~iG~P~v~~--a~V~a~V~~~~k~~Kv~vfK 74 (101)
T 3v2d_V 1 MFAIVKTGGKQYRVEPGLKLRVEK--LDAEPGATVELP-VLLLGGEK-TVVGTPVVEG--ASVVAEVLGHGRGKKILVSK 74 (101)
T ss_dssp CEEEEEETTEEEEECTTCEEEESC--CSCCTTCEEEEC-EEEEESSS-CEECSSSCSS--CCEEEEEEEEEECCCEEEEE
T ss_pred CEEEEEeCCEEEEEeCCCEEEECC--cCCCCCCEEEEE-EEEECCCc-eEECCcccCC--CEEEEEEeeccCCCcEEEEE
Confidence 999999999999999999999999 789999999999 99999666 8999999999 89999999999999999999
Q ss_pred eCCCCCcccccCccCcceEEEEeEEE
Q psy1265 289 KIPRKRHTRFRFFRTQLTMIRINEIE 314 (384)
Q Consensus 289 kKRRKrYRRk~GHRQ~yTrLRIteI~ 314 (384)
|||||+|+|++||||+||+|+|++|.
T Consensus 75 ~krrK~yrrk~GHRQ~~T~l~I~~I~ 100 (101)
T 3v2d_V 75 FKAKVQYRRKKGHRQPYTELLIKEIR 100 (101)
T ss_dssp EETTTTEEEEEEECCEEEEEEEEEEC
T ss_pred ECCCCCcCCCCcccCCeEEEEEEEEe
Confidence 99999999999999999999999995
No 3
>2zjr_O 50S ribosomal protein L21; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.155.1.1 PDB: 1nwx_P* 1nwy_P* 1pnu_P 1pny_P 1sm1_P* 1vor_S 1vou_S 1vow_S 1voy_S 1vp0_S 1xbp_P* 1yl3_2 2b66_V 2b9n_V 2b9p_V 2zjp_O* 2zjq_O 1nkw_P 3cf5_O* 3dll_O* ...
Probab=100.00 E-value=5.1e-38 Score=260.74 Aligned_cols=99 Identities=28% Similarity=0.396 Sum_probs=92.2
Q ss_pred eEEEEEECCEEEEEccCCEEEEcCCCCCCCCCCeEEeceEEEEeCCCceEEcccccCCceeEEEEEEEeeecCCeeEEEE
Q psy1265 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFR 288 (384)
Q Consensus 209 MYAIVeIGGKQYKVt~GDvI~VEr~ll~aevGDkI~LdKVLLVGs~d~TlIGrPyLega~AkVeAtVVEh~KgkKViVFK 288 (384)
|||||++|||||||++||+|.||+ +++++||+|.|+ |||+++ +++.+|+| |++ |+|+|+|+||++++|+++||
T Consensus 1 myAIi~~gGkQykV~~Gd~i~vek--l~~~~G~~v~~~-VLlv~~-~~~~iG~P-v~~--a~V~a~V~~~~k~~Kv~vfK 73 (100)
T 2zjr_O 1 MFAIIQTGGKQYRVSEGDVIRVES--LQGEAGDKVELK-ALFVGG-EQTVFGED-AGK--YTVQAEVVEHGRGKKIYIRK 73 (100)
T ss_dssp ----CCSSCCSCCSCCEEEEECCS--CCSSCCEEEECC-SCEETT-SCEECSST-TTT--SCEEEEEEECCBCCCEEEEE
T ss_pred CEEEEEECCEEEEEeCCCEEEEcc--cCCCCCCEEEEE-EEEEcC-CCeEECCc-CCC--CEEEEEEEeecCCCcEEEEE
Confidence 899999999999999999999999 789999999999 999999 89999999 999 89999999999999999999
Q ss_pred eCCCCCcccccCccCcceEEEEeEEE
Q psy1265 289 KIPRKRHTRFRFFRTQLTMIRINEIE 314 (384)
Q Consensus 289 kKRRKrYRRk~GHRQ~yTrLRIteI~ 314 (384)
|||||+|+|++||||+||+|+|++|.
T Consensus 74 ~krrK~yrrk~GHRQ~~T~l~I~~I~ 99 (100)
T 2zjr_O 74 YKSGVQYRRRTGHRQNFTAIKILGIQ 99 (100)
T ss_dssp ECSSSCCEEEEEECCBEEEEECCCC-
T ss_pred ECCCCCCcCCCCccCCcEEEEEEEEE
Confidence 99999999999999999999999986
No 4
>3bbo_T Ribosomal protein L21; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=1e-38 Score=300.66 Aligned_cols=136 Identities=24% Similarity=0.237 Sum_probs=101.0
Q ss_pred cCCCceEEEEEECCEEEEEccCCEEEEcCCCCCCCCCCeEEeceEEEEeCCCceEEcccccCCceeEEEEEEEeeecCCe
Q psy1265 204 NEQGRLFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGLVNVTGTIIEKDLSHT 283 (384)
Q Consensus 204 ~~~~~MYAIVeIGGKQYKVt~GDvI~VEr~ll~aevGDkI~LdKVLLVGs~d~TlIGrPyLega~AkVeAtVVEh~KgkK 283 (384)
...++|||||++|||||||++||+|.||+ +.++++||+|.|++|||+|+++++++|+|||++ ++|+|+|++|+|++|
T Consensus 119 k~~~~MYAIIetGGKQYKV~~GD~I~VEK-L~~aevGd~V~LdkVLlVg~~d~t~VG~P~V~g--AkV~AtVveh~KgkK 195 (257)
T 3bbo_T 119 PREEIIFAVVVIGSRQYIVIPGRWIYTQR-LKGATVNDKIVLNKVLLVGTKASTYIGTPIVTN--AAVHAVVEEQLLDDK 195 (257)
T ss_dssp -----CCCCCCSSSCCCCCCTTCCCCCCC-CTTSCTTCEEECTTCCCBCSSSCBCCSSSSCSS--CCCEEECCCCCCCSC
T ss_pred CcCCCeEEEEEECCEEEEEeCCCEEEEeC-CCCCCCCCEEEEEEEEEEeCCCCeEeCCcccCC--CEEEEEEEeecCCCc
Confidence 44567999999999999999999999998 334899999999999999999999999999999 789999999999999
Q ss_pred eEEEEeCCCCCcccccCccCcceEEEEeEEEeccccCCccccccchhhhccccHHHHHHHHHh
Q psy1265 284 RTNFRKIPRKRHTRFRFFRTQLTMIRINEIEIIEKVGQRKDVEGTQRLINLCLQTQYNLILEN 346 (384)
Q Consensus 284 ViVFKkKRRKrYRRk~GHRQ~yTrLRIteI~l~gkv~~~~e~~~~~r~~dL~~~aEL~~mar~ 346 (384)
|++|||||||+|||++||||+||+|||++|.+.++....+... -.++.+.+|+++-|+.
T Consensus 196 IiVFK~KRRK~yRRk~GHRQ~~T~LrI~~I~~~g~~~~~~~~~----~~~~~~~~~~~a~a~~ 254 (257)
T 3bbo_T 196 VIVFKYKKKKNYRRNIGHRQPITRIKITGITGYEDYPASTLEA----EVEAKEEAEAEAEAEA 254 (257)
T ss_dssp CCEEECCTTTTCCEEECCCCCCCCCCCCCCCC-------------------------------
T ss_pred EEEEEeCCCCCCcCCCCccCCcEEEEEEEEEcCCCCccccccc----ccCcccccchhccccc
Confidence 9999999999999999999999999999999988664433222 2355566666655543
No 5
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=44.23 E-value=23 Score=26.94 Aligned_cols=22 Identities=23% Similarity=0.539 Sum_probs=19.8
Q ss_pred EEEEECCEEEEEccCCEEEEcC
Q psy1265 211 AIIHVLGRQTKVTPNDIIIVDS 232 (384)
Q Consensus 211 AIVeIGGKQYKVt~GDvI~VEr 232 (384)
+.+.++|+.|.+.+||.+.++.
T Consensus 69 ~~~~i~~~~~~l~~Gd~i~i~~ 90 (114)
T 2ozj_A 69 AVITFDDQKIDLVPEDVLMVPA 90 (114)
T ss_dssp EEEEETTEEEEECTTCEEEECT
T ss_pred EEEEECCEEEEecCCCEEEECC
Confidence 4578899999999999999997
No 6
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=40.82 E-value=28 Score=26.91 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=19.6
Q ss_pred EEEEECCEEEEEccCCEEEEcC
Q psy1265 211 AIIHVLGRQTKVTPNDIIIVDS 232 (384)
Q Consensus 211 AIVeIGGKQYKVt~GDvI~VEr 232 (384)
+.+.++|+.|.+.+||.+.++.
T Consensus 65 ~~~~i~~~~~~l~~Gd~~~i~~ 86 (128)
T 4i4a_A 65 AIIRINDEDFPVTKGDLIIIPL 86 (128)
T ss_dssp EEEEETTEEEEEETTCEEEECT
T ss_pred EEEEECCEEEEECCCcEEEECC
Confidence 4567899999999999999997
No 7
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=38.36 E-value=35 Score=24.55 Aligned_cols=21 Identities=10% Similarity=0.207 Sum_probs=18.7
Q ss_pred EEEECCEEEEEccCCEEEEcC
Q psy1265 212 IIHVLGRQTKVTPNDIIIVDS 232 (384)
Q Consensus 212 IVeIGGKQYKVt~GDvI~VEr 232 (384)
.+.++|+.|.+.+||.+.++.
T Consensus 61 ~~~~~~~~~~l~~Gd~~~ip~ 81 (105)
T 1v70_A 61 VVRVGEEEALLAPGMAAFAPA 81 (105)
T ss_dssp EEEETTEEEEECTTCEEEECT
T ss_pred EEEECCEEEEeCCCCEEEECC
Confidence 467789999999999999986
No 8
>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A
Probab=38.05 E-value=32 Score=27.10 Aligned_cols=22 Identities=23% Similarity=0.523 Sum_probs=19.2
Q ss_pred EEEEECCEEEEEccCCEEEEcC
Q psy1265 211 AIIHVLGRQTKVTPNDIIIVDS 232 (384)
Q Consensus 211 AIVeIGGKQYKVt~GDvI~VEr 232 (384)
+.+.++|+.|.+.+||++.++.
T Consensus 49 ~~~~i~~~~~~l~~Gd~~~i~p 70 (164)
T 2arc_A 49 GVVKNQGREFVCRPGDILLFPP 70 (164)
T ss_dssp EEEEETTEEEEECTTCEEEECT
T ss_pred EEEEECCEEEEecCCeEEEEcC
Confidence 3467899999999999999987
No 9
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=36.21 E-value=36 Score=27.38 Aligned_cols=22 Identities=14% Similarity=0.306 Sum_probs=19.4
Q ss_pred EEEEECCEEEEEccCCEEEEcC
Q psy1265 211 AIIHVLGRQTKVTPNDIIIVDS 232 (384)
Q Consensus 211 AIVeIGGKQYKVt~GDvI~VEr 232 (384)
+.+.++|+.+.+.+||.+.++.
T Consensus 70 ~~~~~~g~~~~l~~GD~v~ip~ 91 (119)
T 3lwc_A 70 LSVSTDGETVTAGPGEIVYMPK 91 (119)
T ss_dssp EEEEETTEEEEECTTCEEEECT
T ss_pred EEEEECCEEEEECCCCEEEECC
Confidence 4467799999999999999997
No 10
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=35.85 E-value=26 Score=25.61 Aligned_cols=22 Identities=5% Similarity=0.190 Sum_probs=19.3
Q ss_pred EEEEECCEEEEEccCCEEEEcC
Q psy1265 211 AIIHVLGRQTKVTPNDIIIVDS 232 (384)
Q Consensus 211 AIVeIGGKQYKVt~GDvI~VEr 232 (384)
+.+.++|+.|.+.+||.+.++.
T Consensus 61 ~~~~~~~~~~~l~~Gd~~~ip~ 82 (102)
T 3d82_A 61 LQIAFRDQNITLQAGEMYVIPK 82 (102)
T ss_dssp EEEECSSCEEEEETTEEEEECT
T ss_pred EEEEECCEEEEEcCCCEEEECC
Confidence 4567889999999999999987
No 11
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=35.36 E-value=35 Score=25.20 Aligned_cols=21 Identities=14% Similarity=0.241 Sum_probs=18.8
Q ss_pred EEEECCEEEEEccCCEEEEcC
Q psy1265 212 IIHVLGRQTKVTPNDIIIVDS 232 (384)
Q Consensus 212 IVeIGGKQYKVt~GDvI~VEr 232 (384)
.+.++|+.|.+.+||.+.++.
T Consensus 56 ~~~~~~~~~~l~~Gd~~~i~~ 76 (113)
T 2gu9_A 56 EAIVDGHTQALQAGSLIAIER 76 (113)
T ss_dssp EEEETTEEEEECTTEEEEECT
T ss_pred EEEECCEEEEeCCCCEEEECC
Confidence 466799999999999999997
No 12
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=35.33 E-value=33 Score=26.84 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=19.3
Q ss_pred EEEECCEEEEEccCCEEEEcC
Q psy1265 212 IIHVLGRQTKVTPNDIIIVDS 232 (384)
Q Consensus 212 IVeIGGKQYKVt~GDvI~VEr 232 (384)
.+.++|+.|.+.+||.+.++.
T Consensus 68 ~~~i~~~~~~l~~Gd~i~ip~ 88 (114)
T 3fjs_A 68 EIGVDGAQRRLHQGDLLYLGA 88 (114)
T ss_dssp EEEETTEEEEECTTEEEEECT
T ss_pred EEEECCEEEEECCCCEEEECC
Confidence 477899999999999999997
No 13
>2ivw_A PILP pilot protein; lipoprotein, pilus biogenesis, secretin; NMR {Neisseria meningitidis}
Probab=34.91 E-value=34 Score=28.84 Aligned_cols=24 Identities=13% Similarity=0.066 Sum_probs=21.4
Q ss_pred CceEEEEEECCEEEEEccCCEEEE
Q psy1265 207 GRLFAIIHVLGRQTKVTPNDIIIV 230 (384)
Q Consensus 207 ~~MYAIVeIGGKQYKVt~GDvI~V 230 (384)
+..+|+|+..|+=|+|..|++|=-
T Consensus 37 ~~~~ALV~~dG~vyrVk~G~yiG~ 60 (113)
T 2ivw_A 37 QKVSGFIEAEGYVYTVGVGNYLGQ 60 (113)
T ss_dssp SSEEEEEEETTEEEEECSSEEETT
T ss_pred CeEEEEEEeCCcEEEEccCCEecc
Confidence 468999999999999999999833
No 14
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=34.73 E-value=24 Score=27.75 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=19.8
Q ss_pred EEEEECCEE--EEEccCCEEEEcC
Q psy1265 211 AIIHVLGRQ--TKVTPNDIIIVDS 232 (384)
Q Consensus 211 AIVeIGGKQ--YKVt~GDvI~VEr 232 (384)
|.+.++|+. |.+.+||.+.++.
T Consensus 64 ~~l~~~~~~~~~~l~~Gd~i~ipa 87 (112)
T 2opk_A 64 AGIECEGDTAPRVMRPGDWLHVPA 87 (112)
T ss_dssp EEEEETTCSSCEEECTTEEEEECT
T ss_pred EEEEECCEEEEEEECCCCEEEECC
Confidence 567889999 9999999999996
No 15
>2y4x_A PILP protein; biosynthetic protein; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 2y4y_A
Probab=33.81 E-value=41 Score=27.28 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=21.6
Q ss_pred CceEEEEEECCEEEEEccCCEEEEc
Q psy1265 207 GRLFAIIHVLGRQTKVTPNDIIIVD 231 (384)
Q Consensus 207 ~~MYAIVeIGGKQYKVt~GDvI~VE 231 (384)
+.++|.|+..|+=|+|..|++|=-+
T Consensus 34 ~~~~ALV~~dg~v~~V~~G~yiG~n 58 (93)
T 2y4x_A 34 QGTFALVKGAGGVHRVRVGDYLGRN 58 (93)
T ss_dssp TEEEEEEEETTEEEEECTTCEETTT
T ss_pred CeEEEEEEeCCCEEEEccCCEeccC
Confidence 4689999999999999999998433
No 16
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=33.42 E-value=37 Score=26.35 Aligned_cols=22 Identities=14% Similarity=0.341 Sum_probs=19.8
Q ss_pred EEEEECCEEEEEccCCEEEEcC
Q psy1265 211 AIIHVLGRQTKVTPNDIIIVDS 232 (384)
Q Consensus 211 AIVeIGGKQYKVt~GDvI~VEr 232 (384)
+.+.++|+.|.+.+||.+.++.
T Consensus 59 ~~~~i~~~~~~l~~Gd~i~i~~ 80 (125)
T 3cew_A 59 GFITIDGEKIELQAGDWLRIAP 80 (125)
T ss_dssp EEEEETTEEEEEETTEEEEECT
T ss_pred EEEEECCEEEEeCCCCEEEECC
Confidence 4578899999999999999987
No 17
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=33.33 E-value=70 Score=27.60 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=19.4
Q ss_pred EEEEECCEEEEEccCCEEEEcC
Q psy1265 211 AIIHVLGRQTKVTPNDIIIVDS 232 (384)
Q Consensus 211 AIVeIGGKQYKVt~GDvI~VEr 232 (384)
+.+.++|+.|.+.+||.++++.
T Consensus 95 ~~l~i~g~~~~l~~GD~i~iP~ 116 (151)
T 4axo_A 95 LDIIIDGRKVSASSGELIFIPK 116 (151)
T ss_dssp EEEEETTEEEEEETTCEEEECT
T ss_pred EEEEECCEEEEEcCCCEEEECC
Confidence 3466899999999999999997
No 18
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=33.04 E-value=45 Score=25.12 Aligned_cols=21 Identities=24% Similarity=0.249 Sum_probs=18.8
Q ss_pred EEEECCEEEEEccCCEEEEcC
Q psy1265 212 IIHVLGRQTKVTPNDIIIVDS 232 (384)
Q Consensus 212 IVeIGGKQYKVt~GDvI~VEr 232 (384)
.+.++|+.|.+.+||.+.++.
T Consensus 66 ~~~~~~~~~~l~~Gd~~~ip~ 86 (116)
T 2pfw_A 66 HVNVDGVIKVLTAGDSFFVPP 86 (116)
T ss_dssp EEEETTEEEEECTTCEEEECT
T ss_pred EEEECCEEEEeCCCCEEEECc
Confidence 466799999999999999997
No 19
>2lc4_A PILP protein; type IV pilus, structural protein; NMR {Pseudomonas aeruginosa}
Probab=32.94 E-value=41 Score=28.30 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=21.6
Q ss_pred CceEEEEEECCEEEEEccCCEEEEc
Q psy1265 207 GRLFAIIHVLGRQTKVTPNDIIIVD 231 (384)
Q Consensus 207 ~~MYAIVeIGGKQYKVt~GDvI~VE 231 (384)
+.++|.|+..|+=|+|..|++|=-+
T Consensus 41 ~~~~ALV~~dG~vyrVk~G~ylG~n 65 (111)
T 2lc4_A 41 QGTFALVKGAGGVHRVRVGDYLGRN 65 (111)
T ss_dssp TEEEEEEEETTEEEEEETTCEETTT
T ss_pred CeEEEEEEeCCcEEEEccCCEeccC
Confidence 4689999999999999999998433
No 20
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=32.57 E-value=41 Score=26.53 Aligned_cols=22 Identities=9% Similarity=0.258 Sum_probs=19.1
Q ss_pred EEEEEC-CEEEEEccCCEEEEcC
Q psy1265 211 AIIHVL-GRQTKVTPNDIIIVDS 232 (384)
Q Consensus 211 AIVeIG-GKQYKVt~GDvI~VEr 232 (384)
+.+.++ |..|.+.+||.+.++.
T Consensus 60 ~~~~i~~g~~~~l~~GD~i~ip~ 82 (101)
T 1o5u_A 60 VEVTTEDGKKYVIEKGDLVTFPK 82 (101)
T ss_dssp EEEEETTCCEEEEETTCEEEECT
T ss_pred EEEEECCCCEEEECCCCEEEECC
Confidence 456778 9999999999999987
No 21
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=30.90 E-value=51 Score=24.78 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=19.3
Q ss_pred EEEEECCEEEEEccCCEEEEcC
Q psy1265 211 AIIHVLGRQTKVTPNDIIIVDS 232 (384)
Q Consensus 211 AIVeIGGKQYKVt~GDvI~VEr 232 (384)
+.+.++|+.|.+.+||.+.++.
T Consensus 71 ~~~~~~~~~~~l~~Gd~~~ip~ 92 (115)
T 1yhf_A 71 AEITIDQETYRVAEGQTIVMPA 92 (115)
T ss_dssp EEEEETTEEEEEETTCEEEECT
T ss_pred EEEEECCEEEEECCCCEEEECC
Confidence 3467899999999999999987
No 22
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=30.20 E-value=50 Score=27.18 Aligned_cols=22 Identities=9% Similarity=0.222 Sum_probs=19.8
Q ss_pred EEEEECCEEEEEccCCEEEEcC
Q psy1265 211 AIIHVLGRQTKVTPNDIIIVDS 232 (384)
Q Consensus 211 AIVeIGGKQYKVt~GDvI~VEr 232 (384)
+.+.++|+.|.+.+||.+.++.
T Consensus 86 ~~l~~~g~~~~l~~GD~i~~p~ 107 (133)
T 2pyt_A 86 LHVRHEGETMIAKAGDVMFIPK 107 (133)
T ss_dssp EEEEETTEEEEEETTCEEEECT
T ss_pred EEEEECCEEEEECCCcEEEECC
Confidence 4577899999999999999987
No 23
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=29.40 E-value=52 Score=26.84 Aligned_cols=21 Identities=14% Similarity=0.264 Sum_probs=19.1
Q ss_pred EEEECCEEEEEccCCEEEEcC
Q psy1265 212 IIHVLGRQTKVTPNDIIIVDS 232 (384)
Q Consensus 212 IVeIGGKQYKVt~GDvI~VEr 232 (384)
.+.++|+.|.+.+||.+.++.
T Consensus 80 ~~~~~~~~~~l~~Gd~i~i~~ 100 (162)
T 3l2h_A 80 TLTMENDQYPIAPGDFVGFPC 100 (162)
T ss_dssp EEEETTEEEEECTTCEEEECT
T ss_pred EEEECCEEEEeCCCCEEEECC
Confidence 467899999999999999997
No 24
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=29.20 E-value=25 Score=28.87 Aligned_cols=33 Identities=12% Similarity=0.254 Sum_probs=26.0
Q ss_pred EEEEEC-CEEEEEccCCEEEEcCCCCCCCCCCeEEece
Q psy1265 211 AIIHVL-GRQTKVTPNDIIIVDSNSFAPLNGDKIKFEK 247 (384)
Q Consensus 211 AIVeIG-GKQYKVt~GDvI~VEr~ll~aevGDkI~LdK 247 (384)
|||.++ |..|.|.....|..+ ..++|+.|.|++
T Consensus 52 ~iVk~s~g~~~~V~v~~~Vd~~----~LkpG~rVaLn~ 85 (109)
T 2wg5_A 52 VVVKSSTGPKFVVNTSQYINEE----ELKPGARVALNQ 85 (109)
T ss_dssp EEEEETTSCEEEECBCTTSCTT----TCCTTCEEEEET
T ss_pred EEEEeCCCCEEEEEcccccCHH----HCCCCCEEEECC
Confidence 788777 888999988877443 489999998764
No 25
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=28.39 E-value=47 Score=24.98 Aligned_cols=22 Identities=5% Similarity=0.196 Sum_probs=19.2
Q ss_pred EEEEECC-EEEEEccCCEEEEcC
Q psy1265 211 AIIHVLG-RQTKVTPNDIIIVDS 232 (384)
Q Consensus 211 AIVeIGG-KQYKVt~GDvI~VEr 232 (384)
+.+.++| +.|.+.+||.+.++.
T Consensus 59 ~~~~~~~~~~~~l~~Gd~~~ip~ 81 (107)
T 2i45_A 59 MAVDFADGGSMTIREGEMAVVPK 81 (107)
T ss_dssp EEEEETTSCEEEECTTEEEEECT
T ss_pred EEEEECCCcEEEECCCCEEEECC
Confidence 3567888 999999999999997
No 26
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=27.74 E-value=51 Score=26.29 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=19.4
Q ss_pred EEEEECCEEEEEccCCEEEEcC
Q psy1265 211 AIIHVLGRQTKVTPNDIIIVDS 232 (384)
Q Consensus 211 AIVeIGGKQYKVt~GDvI~VEr 232 (384)
+.+.++|+.|.+.+||.+.++.
T Consensus 89 ~~~~i~~~~~~l~~Gd~i~i~~ 110 (133)
T 1o4t_A 89 GVFHDNGKDVPIKAGDVCFTDS 110 (133)
T ss_dssp EEEEETTEEEEEETTEEEEECT
T ss_pred EEEEECCEEEEeCCCcEEEECC
Confidence 4467899999999999999987
No 27
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=27.62 E-value=55 Score=27.58 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=19.9
Q ss_pred EEEEECCEEEEEccCCEEEEcC
Q psy1265 211 AIIHVLGRQTKVTPNDIIIVDS 232 (384)
Q Consensus 211 AIVeIGGKQYKVt~GDvI~VEr 232 (384)
+.+.++|+.|.+.+||.+.++.
T Consensus 75 ~~v~v~g~~~~l~~Gd~i~ip~ 96 (156)
T 3kgz_A 75 GQCLVGETISDVAQGDLVFIPP 96 (156)
T ss_dssp EEEEETTEEEEEETTCEEEECT
T ss_pred EEEEECCEEEEeCCCCEEEECC
Confidence 4567999999999999999997
No 28
>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}
Probab=27.36 E-value=33 Score=30.18 Aligned_cols=21 Identities=19% Similarity=0.150 Sum_probs=18.5
Q ss_pred EEEECCEEEEEccCCEEEEcC
Q psy1265 212 IIHVLGRQTKVTPNDIIIVDS 232 (384)
Q Consensus 212 IVeIGGKQYKVt~GDvI~VEr 232 (384)
.++++|+.|.|.+||.|.|+.
T Consensus 80 ~v~idge~~~l~~GD~v~IPp 100 (157)
T 4h7l_A 80 TIELNGQSYPLTKLLAISIPP 100 (157)
T ss_dssp EEEETTEEEECCTTEEEEECT
T ss_pred EEEECCEEEEeCCCCEEEECC
Confidence 344899999999999999997
No 29
>2out_A MU-like prophage flumu protein GP35, protein HI1507 in MU-like prophage flumu region...; structural genomics, hypothetical protein; NMR {Haemophilus influenzae} SCOP: a.140.3.2 d.344.1.1
Probab=27.36 E-value=19 Score=31.50 Aligned_cols=25 Identities=24% Similarity=0.242 Sum_probs=21.5
Q ss_pred hhcc--ccHHHHHHHHHhcCCchhhhh
Q psy1265 331 LINL--CLQTQYNLILENQGKTYMASL 355 (384)
Q Consensus 331 ~~dL--~~~aEL~~mar~~g~~~~as~ 355 (384)
..|| |+++||++.+.++|+++.++.
T Consensus 86 ~~~l~~lTV~ELKa~Lde~gIe~~ssa 112 (131)
T 2out_A 86 STDLNTFTVEQLKAQLTERGITFKQSA 112 (131)
T ss_dssp CCSSTTCCSHHHHHHHHHHTCCCSSSC
T ss_pred cCccccccHHHHHHHHHHcCCcccccC
Confidence 3466 899999999999999988764
No 30
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=26.92 E-value=58 Score=27.47 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=19.8
Q ss_pred EEEEECCEEEEEccCCEEEEcC
Q psy1265 211 AIIHVLGRQTKVTPNDIIIVDS 232 (384)
Q Consensus 211 AIVeIGGKQYKVt~GDvI~VEr 232 (384)
+.+.++|+.|.+.+||.+.++.
T Consensus 87 ~~~~i~~~~~~l~~Gd~i~ip~ 108 (167)
T 3ibm_A 87 AEVVLDDRVEPLTPLDCVYIAP 108 (167)
T ss_dssp EEEEETTEEEEECTTCEEEECT
T ss_pred EEEEECCEEEEECCCCEEEECC
Confidence 4567999999999999999997
No 31
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=26.63 E-value=57 Score=25.00 Aligned_cols=21 Identities=5% Similarity=0.058 Sum_probs=18.9
Q ss_pred EEEECCEEEEEccCCEEEEcC
Q psy1265 212 IIHVLGRQTKVTPNDIIIVDS 232 (384)
Q Consensus 212 IVeIGGKQYKVt~GDvI~VEr 232 (384)
.+.++|+.|.+.+||.+.++.
T Consensus 73 ~~~~~~~~~~l~~Gd~~~ip~ 93 (126)
T 4e2g_A 73 ELTIGEETRVLRPGMAYTIPG 93 (126)
T ss_dssp EEEETTEEEEECTTEEEEECT
T ss_pred EEEECCEEEEeCCCCEEEECC
Confidence 467799999999999999996
No 32
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}
Probab=25.15 E-value=65 Score=25.14 Aligned_cols=22 Identities=0% Similarity=-0.126 Sum_probs=19.2
Q ss_pred EEEEECC-EEEEEccCCEEEEcC
Q psy1265 211 AIIHVLG-RQTKVTPNDIIIVDS 232 (384)
Q Consensus 211 AIVeIGG-KQYKVt~GDvI~VEr 232 (384)
+.+.++| +.|.+.+||.+.++.
T Consensus 75 ~~~~~~~~~~~~l~~Gd~~~ip~ 97 (134)
T 2o8q_A 75 VEFEYEDIGAVMLEAGGSAFQPP 97 (134)
T ss_dssp EEEEETTTEEEEEETTCEEECCT
T ss_pred EEEEECCcEEEEecCCCEEEECC
Confidence 3467788 999999999999987
No 33
>4av2_M PILP protein, type IV pilus biogenesis and competence protein P; protein transport, outer membrane protein; 26.00A {Neisseria meningitidis MC58}
Probab=25.09 E-value=61 Score=28.94 Aligned_cols=25 Identities=12% Similarity=0.050 Sum_probs=21.9
Q ss_pred CCceEEEEEECCEEEEEccCCEEEE
Q psy1265 206 QGRLFAIIHVLGRQTKVTPNDIIIV 230 (384)
Q Consensus 206 ~~~MYAIVeIGGKQYKVt~GDvI~V 230 (384)
.+.++|+|...|+=|+|..|++|=-
T Consensus 104 ~~~~~alv~~dg~v~~V~~G~ylG~ 128 (181)
T 4av2_M 104 GQKVSGFIEAEGYVYTVGVGNYLGQ 128 (181)
T ss_dssp SSCCEEEEEETTEEEEECSSEEETT
T ss_pred CCEEEEEEecCCCEEEEccCCEecc
Confidence 4578999999999999999998833
No 34
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=24.89 E-value=50 Score=25.37 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=19.7
Q ss_pred EEEEE-CCEEEEEccCCEEEEcCC
Q psy1265 211 AIIHV-LGRQTKVTPNDIIIVDSN 233 (384)
Q Consensus 211 AIVeI-GGKQYKVt~GDvI~VEr~ 233 (384)
+.+.+ +|+.|.+.+||.+.++.+
T Consensus 71 ~~~~~~~~~~~~l~~Gd~~~i~~~ 94 (125)
T 3h8u_A 71 AEYHQGNGIVTHLKAGDIAIAKPG 94 (125)
T ss_dssp EEEECSTTCEEEEETTEEEEECTT
T ss_pred EEEEECCCeEEEeCCCCEEEECCC
Confidence 45677 899999999999999973
No 35
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=24.43 E-value=68 Score=28.14 Aligned_cols=20 Identities=5% Similarity=0.042 Sum_probs=19.0
Q ss_pred EEECCEEEEEccCCEEEEcC
Q psy1265 213 IHVLGRQTKVTPNDIIIVDS 232 (384)
Q Consensus 213 VeIGGKQYKVt~GDvI~VEr 232 (384)
+.++|+.|.+.+||.++++.
T Consensus 123 vtl~g~~~~L~~Gds~~iP~ 142 (166)
T 2vpv_A 123 VTVCKNKFLSVKGSTFQIPA 142 (166)
T ss_dssp EEETTEEEEEETTCEEEECT
T ss_pred EEECCEEEEEcCCCEEEECC
Confidence 78999999999999999996
No 36
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=24.12 E-value=69 Score=26.76 Aligned_cols=21 Identities=10% Similarity=-0.032 Sum_probs=19.0
Q ss_pred EEEECCEEEEEccCCEEEEcC
Q psy1265 212 IIHVLGRQTKVTPNDIIIVDS 232 (384)
Q Consensus 212 IVeIGGKQYKVt~GDvI~VEr 232 (384)
.+.++|+.|.+.+||.+.++.
T Consensus 138 ~~~~~~~~~~l~~GD~i~i~~ 158 (192)
T 1y9q_A 138 KVFFDEQWHELQQGEHIRFFS 158 (192)
T ss_dssp EEEETTEEEEECTTCEEEEEC
T ss_pred EEEECCEEEEeCCCCEEEEcC
Confidence 467899999999999999997
No 37
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=23.87 E-value=44 Score=25.47 Aligned_cols=22 Identities=9% Similarity=0.181 Sum_probs=19.5
Q ss_pred EEEEECCEEE-EEccCCEEEEcC
Q psy1265 211 AIIHVLGRQT-KVTPNDIIIVDS 232 (384)
Q Consensus 211 AIVeIGGKQY-KVt~GDvI~VEr 232 (384)
+.+.++|+.| .+.+||.+.++.
T Consensus 58 ~~~~i~~~~~~~l~~Gd~i~ip~ 80 (117)
T 2b8m_A 58 MTLTLEDQEPHNYKEGNIVYVPF 80 (117)
T ss_dssp EEEEETTSCCEEEETTCEEEECT
T ss_pred EEEEECCEEEEEeCCCCEEEECC
Confidence 4567899999 999999999997
No 38
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=22.06 E-value=81 Score=26.88 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=19.2
Q ss_pred EEEECCEEEEEccCCEEEEcC
Q psy1265 212 IIHVLGRQTKVTPNDIIIVDS 232 (384)
Q Consensus 212 IVeIGGKQYKVt~GDvI~VEr 232 (384)
.+.++|+.|.+.+||.+.++.
T Consensus 85 ~~~v~g~~~~l~~GD~i~ip~ 105 (166)
T 3jzv_A 85 HAMVGRAVSAVAPYDLVTIPG 105 (166)
T ss_dssp EEEETTEEEEECTTCEEEECT
T ss_pred EEEECCEEEEeCCCCEEEECC
Confidence 467899999999999999997
No 39
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=21.76 E-value=66 Score=25.03 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=18.8
Q ss_pred EEE--ECCEEEEEccCCEEEEcC
Q psy1265 212 IIH--VLGRQTKVTPNDIIIVDS 232 (384)
Q Consensus 212 IVe--IGGKQYKVt~GDvI~VEr 232 (384)
.+. ++|+.|.+.+||.+.++.
T Consensus 71 ~~~~~~~~~~~~l~~Gd~~~ip~ 93 (145)
T 3ht1_A 71 GLVLPDQGRTEEVGPGEAIFIPR 93 (145)
T ss_dssp EEEEGGGTEEEEECTTCEEEECT
T ss_pred EEEEeECCEEEEECCCCEEEECC
Confidence 456 899999999999999997
No 40
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=21.56 E-value=48 Score=24.47 Aligned_cols=21 Identities=0% Similarity=-0.127 Sum_probs=18.2
Q ss_pred EEEEC-CEEEEEccCCEEEEcC
Q psy1265 212 IIHVL-GRQTKVTPNDIIIVDS 232 (384)
Q Consensus 212 IVeIG-GKQYKVt~GDvI~VEr 232 (384)
.+.++ |+.|.+.+||.+.++.
T Consensus 67 ~~~~~~~~~~~l~~Gd~~~ip~ 88 (110)
T 2q30_A 67 EFVGDGDAVIPAPRGAVLVAPI 88 (110)
T ss_dssp EEECGGGCEEEECTTEEEEEET
T ss_pred EEEeCCCEEEEECCCCEEEeCC
Confidence 45677 7999999999999997
No 41
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=21.27 E-value=79 Score=28.51 Aligned_cols=22 Identities=14% Similarity=0.187 Sum_probs=20.2
Q ss_pred EEEEECCEEEEEccCCEEEEcC
Q psy1265 211 AIIHVLGRQTKVTPNDIIIVDS 232 (384)
Q Consensus 211 AIVeIGGKQYKVt~GDvI~VEr 232 (384)
+.+.++|+.|.|.+||.+.++.
T Consensus 214 ~~~~i~~~~~~l~~GD~i~i~~ 235 (274)
T 1sef_A 214 GMYNLDNEWYPVEKGDYIFMSA 235 (274)
T ss_dssp EEEEETTEEEEEETTCEEEECT
T ss_pred EEEEECCEEEEECCCCEEEECC
Confidence 5678899999999999999997
No 42
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=21.19 E-value=77 Score=29.76 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=20.7
Q ss_pred EEEEECCEEEEEccCCEEEEcC
Q psy1265 211 AIIHVLGRQTKVTPNDIIIVDS 232 (384)
Q Consensus 211 AIVeIGGKQYKVt~GDvI~VEr 232 (384)
+++.++|+.|.|++||+|+++.
T Consensus 218 g~y~l~~~~~~V~~GD~i~~~~ 239 (266)
T 4e2q_A 218 GIYRLGDNWYPVQAGDVIWMAP 239 (266)
T ss_dssp EEEEETTEEEEEETTCEEEECT
T ss_pred EEEEECCEEEEecCCCEEEECC
Confidence 7889999999999999999986
No 43
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=20.83 E-value=63 Score=25.34 Aligned_cols=22 Identities=14% Similarity=0.064 Sum_probs=19.2
Q ss_pred EEEEECCEEEEEccCCEEEEcC
Q psy1265 211 AIIHVLGRQTKVTPNDIIIVDS 232 (384)
Q Consensus 211 AIVeIGGKQYKVt~GDvI~VEr 232 (384)
+.+.++|+.|.+.+||.+.++.
T Consensus 79 ~~~~i~~~~~~l~~Gd~i~ip~ 100 (126)
T 1vj2_A 79 LTVLKEQGEETVEEGFYIFVEP 100 (126)
T ss_dssp EEEECSSCEEEEETTEEEEECT
T ss_pred EEEEECCEEEEECCCCEEEECC
Confidence 3467789999999999999986
Done!