Your job contains 1 sequence.
>psy1265
MSILDTSYWHGSHALECKRNIQTEPTYLRRVTIHCLVPRGLIEGTVATEVLSFRNRKGER
IGQETASRSEKDTSYWRGSHALECKRNIHYIQTEPTYLRRVTIHCLVPRGLIEGPVATEV
LSFRNRKGEDRTGDSQPFRERTLSVQDKGTPYIRPDLDVKVVALTSPLLLPSSSEFTKGT
EIVSTKLSSVPVYLNLVNNQIERNEQGRLFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNG
DKIKFEKVLLVGGADFTLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRF
FRTQLTMIRINEIEIIEKVGQRKDVEGTQRLINLCLQTQYNLILENQGKTYMASLAQHLP
VLVTSSYRRKNSLWFCTQQDTDKS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy1265
(384 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0036853 - symbol:mRpL21 "mitochondrial ribosomal p... 335 2.3e-30 1
UNIPROTKB|E1BWV6 - symbol:MRPL21 "Uncharacterized protein... 242 1.9e-20 1
ZFIN|ZDB-GENE-061027-183 - symbol:zgc:153377 "zgc:153377"... 240 3.4e-20 1
UNIPROTKB|F1MSV8 - symbol:MRPL21 "39S ribosomal protein L... 237 7.7e-20 1
UNIPROTKB|Q2TBS2 - symbol:MRPL21 "39S ribosomal protein L... 237 7.7e-20 1
UNIPROTKB|F1RY70 - symbol:MRPL21 "Uncharacterized protein... 228 8.7e-19 1
UNIPROTKB|Q7Z2W9 - symbol:MRPL21 "39S ribosomal protein L... 227 1.2e-18 1
MGI|MGI:2660674 - symbol:Mrpl21 "mitochondrial ribosomal ... 219 9.6e-18 1
RGD|1310203 - symbol:Mrpl21 "mitochondrial ribosomal prot... 217 1.6e-17 1
WB|WBGene00023422 - symbol:mrpl-21 species:6239 "Caenorha... 203 6.2e-16 1
UNIPROTKB|J9P2W1 - symbol:MRPL21 "Uncharacterized protein... 196 3.8e-15 1
UNIPROTKB|H3BUY0 - symbol:MRPL21 "39S ribosomal protein L... 186 4.9e-14 1
UNIPROTKB|F5H7V8 - symbol:MRPL21 "39S ribosomal protein L... 161 2.8e-11 1
TAIR|locus:2126699 - symbol:NFD1 "NUCLEAR FUSION DEFECTIV... 152 1.7e-08 1
DICTYBASE|DDB_G0288799 - symbol:mrpl21 "ribosomal protein... 127 1.5e-07 1
TIGR_CMR|DET_1325 - symbol:DET_1325 "ribosomal protein L2... 103 6.1e-05 1
TIGR_CMR|SPO_1990 - symbol:SPO_1990 "ribosomal protein L2... 116 8.3e-05 1
TIGR_CMR|GSU_3236 - symbol:GSU_3236 "ribosomal protein L2... 96 0.00035 1
TIGR_CMR|CBU_0385 - symbol:CBU_0385 "ribosomal protein L2... 93 0.00074 1
>FB|FBgn0036853 [details] [associations]
symbol:mRpL21 "mitochondrial ribosomal protein L21"
species:7227 "Drosophila melanogaster" [GO:0005762 "mitochondrial
large ribosomal subunit" evidence=ISS] [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
HAMAP:MF_01363 InterPro:IPR001787 Pfam:PF00829 EMBL:AE014296
GO:GO:0006412 GO:GO:0003723 GO:GO:0005762 GO:GO:0003735
PANTHER:PTHR21349 TIGRFAMs:TIGR00061 CTD:219927
GeneTree:ENSGT00390000005535 FlyBase:FBgn0036853 EMBL:BT128761
RefSeq:NP_649095.2 UniGene:Dm.5837 SMR:Q9VVX4 STRING:Q9VVX4
EnsemblMetazoa:FBtr0075022 EnsemblMetazoa:FBtr0333224 GeneID:40091
KEGG:dme:Dmel_CG9730 UCSC:CG9730-RA InParanoid:Q9VVX4 OMA:KDQQKEC
GenomeRNAi:40091 NextBio:816945 Uniprot:Q9VVX4
Length = 201
Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
Identities = 65/134 (48%), Positives = 92/134 (68%)
Query: 197 VNNQIERNEQGRLFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADF 256
+N Q++++EQGRLFA++H+ G+Q KVTP DII+V+ + P GD+I +KVLL G DF
Sbjct: 66 INRQVQKSEQGRLFAVVHLCGKQFKVTPGDIILVEGY-WPPTIGDEISLDKVLLAGARDF 124
Query: 257 TLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFRKIPRKRHTXXXXXXTQLTMIRINEIEII 316
TLVGRP+L PGL+ V T++EK LSHT+T+FRK RK++ + TM+RIN IE+
Sbjct: 125 TLVGRPILEPGLILVKATVVEKTLSHTKTHFRKKRRKQYMRINFQRSPHTMVRINSIELA 184
Query: 317 EKVGQRKDVEGTQR 330
V + E + R
Sbjct: 185 RPVDGNGEGESSSR 198
>UNIPROTKB|E1BWV6 [details] [associations]
symbol:MRPL21 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] InterPro:IPR001787
Pfam:PF00829 GO:GO:0005739 GO:GO:0006412 GO:GO:0003723
GO:GO:0005840 GO:GO:0003735 PANTHER:PTHR21349 CTD:219927
OMA:TILRINT GeneTree:ENSGT00390000005535 EMBL:AADN02040052
IPI:IPI00600288 RefSeq:NP_001186447.1 UniGene:Gga.3185
Ensembl:ENSGALT00000006955 GeneID:423000 KEGG:gga:423000
NextBio:20825539 Uniprot:E1BWV6
Length = 189
Score = 242 (90.2 bits), Expect = 1.9e-20, P = 1.9e-20
Identities = 53/119 (44%), Positives = 71/119 (59%)
Query: 197 VNNQIERNEQGRLFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADF 256
VN I + GRLFA++H +Q K+T D+I++D N GD+I+ EKVLLVG DF
Sbjct: 67 VNEMIATGQYGRLFAVVHFASKQYKITSEDLIMMD-NVLQAECGDRIRMEKVLLVGADDF 125
Query: 257 TLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFRKIPRKRHTXXXXXXTQLTMIRINEIEI 315
TL+GRPLL LV V T+IEK +S + N R R+ + T++RIN IEI
Sbjct: 126 TLIGRPLLGRDLVRVEATVIEKTVSWPKINMRFRKRQNYLRKKIITNPQTVLRINTIEI 184
>ZFIN|ZDB-GENE-061027-183 [details] [associations]
symbol:zgc:153377 "zgc:153377" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR001787
Pfam:PF00829 ZFIN:ZDB-GENE-061027-183 GO:GO:0006412 GO:GO:0003723
GO:GO:0005840 GO:GO:0003735 PANTHER:PTHR21349
GeneTree:ENSGT00390000005535 EMBL:CABZ01057360 IPI:IPI00635460
Ensembl:ENSDART00000127725 ArrayExpress:F1QJW4 Bgee:F1QJW4
Uniprot:F1QJW4
Length = 234
Score = 240 (89.5 bits), Expect = 3.4e-20, P = 3.4e-20
Identities = 55/119 (46%), Positives = 72/119 (60%)
Query: 197 VNNQIERNEQGRLFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADF 256
VN IE + GRLFA++H RQ KVT D+I+++++ A GD+I+ EKVLLVGG+DF
Sbjct: 112 VNALIEEGQYGRLFAVVHFAARQWKVTNEDLILIENHLDAEC-GDRIRMEKVLLVGGSDF 170
Query: 257 TLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFRKIPRKRHTXXXXXXTQLTMIRINEIEI 315
TLVG+PLL LV V T+IEK S + R R R T++RIN I I
Sbjct: 171 TLVGKPLLGRDLVQVQATVIEKTQSWPMVHMRFWKRHRFQKKRIIVQPQTVLRINTIHI 229
>UNIPROTKB|F1MSV8 [details] [associations]
symbol:MRPL21 "39S ribosomal protein L21, mitochondrial"
species:9913 "Bos taurus" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001787 Pfam:PF00829 GO:GO:0005739 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 GO:GO:0003735 PANTHER:PTHR21349
TIGRFAMs:TIGR00061 IPI:IPI00694162 UniGene:Bt.20025 OMA:TILRINT
GeneTree:ENSGT00390000005535 EMBL:DAAA02063651
Ensembl:ENSBTAT00000005688 Uniprot:F1MSV8
Length = 209
Score = 237 (88.5 bits), Expect = 7.7e-20, P = 7.7e-20
Identities = 54/123 (43%), Positives = 71/123 (57%)
Query: 197 VNNQIERNEQGRLFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADF 256
VN I + GRLFA++H Q KVT D+I+++ N G++I+ EKVLLVG DF
Sbjct: 87 VNELIAGGQYGRLFAVVHFASHQWKVTSEDLILIE-NKLDIACGERIRLEKVLLVGADDF 145
Query: 257 TLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFRKIPRKRHTXXXXXXTQLTMIRINEIEII 316
TL+GRPLL LV V T+IEK S R N R RK + T++RIN IEI
Sbjct: 146 TLLGRPLLGKDLVRVEATVIEKTESWPRVNMRFQKRKNYKRKRIIVNPQTVLRINTIEIA 205
Query: 317 EKV 319
++
Sbjct: 206 PRL 208
>UNIPROTKB|Q2TBS2 [details] [associations]
symbol:MRPL21 "39S ribosomal protein L21, mitochondrial"
species:9913 "Bos taurus" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001787 Pfam:PF00829 GO:GO:0005739 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 GO:GO:0003735 PANTHER:PTHR21349
eggNOG:NOG314874 EMBL:BC109734 IPI:IPI00694162
RefSeq:NP_001069982.1 UniGene:Bt.20025 ProteinModelPortal:Q2TBS2
STRING:Q2TBS2 PRIDE:Q2TBS2 GeneID:618609 KEGG:bta:618609 CTD:219927
HOGENOM:HOG000022586 HOVERGEN:HBG083573 InParanoid:Q2TBS2
OrthoDB:EOG4FN4K1 NextBio:20901273 Uniprot:Q2TBS2
Length = 209
Score = 237 (88.5 bits), Expect = 7.7e-20, P = 7.7e-20
Identities = 54/123 (43%), Positives = 71/123 (57%)
Query: 197 VNNQIERNEQGRLFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADF 256
VN I + GRLFA++H Q KVT D+I+++ N G++I+ EKVLLVG DF
Sbjct: 87 VNELIAGGQYGRLFAVVHFASHQWKVTSEDLILIE-NKLDIACGERIRMEKVLLVGADDF 145
Query: 257 TLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFRKIPRKRHTXXXXXXTQLTMIRINEIEII 316
TL+GRPLL LV V T+IEK S R N R RK + T++RIN IEI
Sbjct: 146 TLLGRPLLGKDLVRVEATVIEKTESWPRVNMRFQKRKNYKRKRIIVNPQTVLRINTIEIA 205
Query: 317 EKV 319
++
Sbjct: 206 PRL 208
>UNIPROTKB|F1RY70 [details] [associations]
symbol:MRPL21 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001787
Pfam:PF00829 GO:GO:0005739 GO:GO:0006412 GO:GO:0003723
GO:GO:0005840 GO:GO:0003735 PANTHER:PTHR21349 TIGRFAMs:TIGR00061
OMA:TILRINT GeneTree:ENSGT00390000005535 EMBL:CU694814
RefSeq:XP_003122473.3 Ensembl:ENSSSCT00000014077 GeneID:100520357
KEGG:ssc:100520357 Uniprot:F1RY70
Length = 209
Score = 228 (85.3 bits), Expect = 8.7e-19, P = 8.7e-19
Identities = 51/119 (42%), Positives = 69/119 (57%)
Query: 197 VNNQIERNEQGRLFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADF 256
VN I GRLFA++H G Q KVT D+I+++ N G++I+ EKVLLVG +F
Sbjct: 87 VNELIAAGRYGRLFAVVHFAGHQWKVTAEDLILIE-NELDVACGERIRLEKVLLVGADNF 145
Query: 257 TLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFRKIPRKRHTXXXXXXTQLTMIRINEIEI 315
TL+G+PLL LV V T+IEK S + N + RK + T++RIN IEI
Sbjct: 146 TLLGKPLLGKELVRVEATVIEKTESWPKINMKFQKRKNYQRKRITVNPQTVLRINSIEI 204
>UNIPROTKB|Q7Z2W9 [details] [associations]
symbol:MRPL21 "39S ribosomal protein L21, mitochondrial"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR001787 Pfam:PF00829 GO:GO:0005739 GO:GO:0006412
EMBL:CH471076 GO:GO:0003723 GO:GO:0005840 GO:GO:0003735
PANTHER:PTHR21349 TIGRFAMs:TIGR00061 eggNOG:NOG314874 CTD:219927
HOGENOM:HOG000022586 HOVERGEN:HBG083573 OrthoDB:EOG4FN4K1
EMBL:AP000808 EMBL:BC055088 EMBL:BM915440 IPI:IPI00375677
IPI:IPI00903193 RefSeq:NP_852615.1 UniGene:Hs.503047
ProteinModelPortal:Q7Z2W9 SMR:Q7Z2W9 IntAct:Q7Z2W9 STRING:Q7Z2W9
PhosphoSite:Q7Z2W9 DMDM:229462820 PaxDb:Q7Z2W9 PRIDE:Q7Z2W9
DNASU:219927 Ensembl:ENST00000362034 Ensembl:ENST00000450904
GeneID:219927 KEGG:hsa:219927 UCSC:uc001ooh.3 GeneCards:GC11M068658
HGNC:HGNC:14479 HPA:HPA051657 MIM:611834 neXtProt:NX_Q7Z2W9
PharmGKB:PA30951 InParanoid:Q7Z2W9 OMA:TILRINT ChiTaRS:MRPL21
GenomeRNAi:219927 NextBio:90846 ArrayExpress:Q7Z2W9 Bgee:Q7Z2W9
CleanEx:HS_MRPL21 Genevestigator:Q7Z2W9 GermOnline:ENSG00000197345
Uniprot:Q7Z2W9
Length = 205
Score = 227 (85.0 bits), Expect = 1.2e-18, P = 1.2e-18
Identities = 53/119 (44%), Positives = 68/119 (57%)
Query: 197 VNNQIERNEQGRLFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADF 256
VN I + GRLFA++H RQ KVT D+I++ N G++I+ EKVLLVG +F
Sbjct: 83 VNEMIVTGQYGRLFAVVHFASRQWKVTSEDLILI-GNELDLACGERIRLEKVLLVGADNF 141
Query: 257 TLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFRKIPRKRHTXXXXXXTQLTMIRINEIEI 315
TL+G+PLL LV V T+IEK S R R RK T T++RIN IEI
Sbjct: 142 TLLGKPLLGKDLVRVEATVIEKTESWPRIIMRFRKRKNFKKKRIVTTPQTVLRINSIEI 200
>MGI|MGI:2660674 [details] [associations]
symbol:Mrpl21 "mitochondrial ribosomal protein L21"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR001787 Pfam:PF00829 MGI:MGI:2660674 GO:GO:0005739
GO:GO:0006412 GO:GO:0003723 GO:GO:0005840 GO:GO:0003735
PANTHER:PTHR21349 TIGRFAMs:TIGR00061 eggNOG:NOG314874 CTD:219927
HOGENOM:HOG000022586 HOVERGEN:HBG083573 OrthoDB:EOG4FN4K1
OMA:TILRINT EMBL:AK003285 EMBL:AK012784 EMBL:AK020739 EMBL:BC028768
IPI:IPI00133965 IPI:IPI00134112 RefSeq:NP_758456.2 UniGene:Mm.74084
ProteinModelPortal:Q9D1N9 SMR:Q9D1N9 STRING:Q9D1N9
PhosphoSite:Q9D1N9 PaxDb:Q9D1N9 PRIDE:Q9D1N9 DNASU:353242
Ensembl:ENSMUST00000025743 Ensembl:ENSMUST00000025745 GeneID:353242
KEGG:mmu:353242 GeneTree:ENSGT00390000005535 NextBio:400369
Bgee:Q9D1N9 CleanEx:MM_MRPL21 Genevestigator:Q9D1N9
GermOnline:ENSMUSG00000024829 Uniprot:Q9D1N9
Length = 209
Score = 219 (82.2 bits), Expect = 9.6e-18, P = 9.6e-18
Identities = 50/123 (40%), Positives = 70/123 (56%)
Query: 197 VNNQIERNEQGRLFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADF 256
VN I + GRLFA++H Q KVT D+I+++ N G++I+ EKVLLVG +F
Sbjct: 87 VNELIATGQYGRLFAVVHFASHQWKVTAEDLILIE-NELDIKCGERIRLEKVLLVGADNF 145
Query: 257 TLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFRKIPRKRHTXXXXXXTQLTMIRINEIEII 316
TL+G+PLL LV V T+IEK S + N + RK T++RIN IEI
Sbjct: 146 TLLGKPLLRKELVRVEATVIEKTESWPKINMKFRKRKNFRKKKIIVNPQTILRINTIEIA 205
Query: 317 EKV 319
++
Sbjct: 206 PRL 208
>RGD|1310203 [details] [associations]
symbol:Mrpl21 "mitochondrial ribosomal protein L21"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] InterPro:IPR001787 Pfam:PF00829 RGD:1310203
GO:GO:0005739 GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 EMBL:CH473953 PANTHER:PTHR21349 CTD:219927
OMA:TILRINT GeneTree:ENSGT00390000005535 IPI:IPI00200368
RefSeq:NP_001101037.1 UniGene:Rn.22778 Ensembl:ENSRNOT00000018848
GeneID:309140 KEGG:rno:309140 UCSC:RGD:1310203 NextBio:660230
Uniprot:D3ZMR9
Length = 209
Score = 217 (81.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 50/123 (40%), Positives = 70/123 (56%)
Query: 197 VNNQIERNEQGRLFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADF 256
VN I + GRLFA++H Q KVT D+I+++ N G++I+ EKVLLVG +F
Sbjct: 87 VNELIAAGQYGRLFAVVHFASHQWKVTAEDLILIE-NELDIKCGERIRLEKVLLVGTDNF 145
Query: 257 TLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFRKIPRKRHTXXXXXXTQLTMIRINEIEII 316
TL+G+PLL LV V T+IEK S + N + RK T++RIN IEI
Sbjct: 146 TLLGKPLLGKDLVRVEATVIEKTESWPKINMKFRKRKNFRKKKIIVNPQTILRINTIEIA 205
Query: 317 EKV 319
++
Sbjct: 206 PRL 208
>WB|WBGene00023422 [details] [associations]
symbol:mrpl-21 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] InterPro:IPR001787 Pfam:PF00829
GO:GO:0040010 GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 EMBL:Z46937 PANTHER:PTHR21349 eggNOG:NOG314874
GeneTree:ENSGT00390000005535 RefSeq:NP_001022585.1
ProteinModelPortal:Q6A575 SMR:Q6A575 STRING:Q6A575 PaxDb:Q6A575
EnsemblMetazoa:F43C1.6.1 EnsemblMetazoa:F43C1.6.2 GeneID:3565999
KEGG:cel:CELE_F43C1.6 UCSC:F43C1.6.1 CTD:3565999 WormBase:F43C1.6
HOGENOM:HOG000209907 InParanoid:Q6A575 OMA:WPPNIGD NextBio:958679
Uniprot:Q6A575
Length = 171
Score = 203 (76.5 bits), Expect = 6.2e-16, P = 6.2e-16
Identities = 43/134 (32%), Positives = 79/134 (58%)
Query: 181 EIVSTKLSSVPVYLNLVNNQIERNEQGRLFAIIHVLGRQTKVTPNDIIIVDSNSFAPLN- 239
+++ T+ V+ + +++++ ++ RLFA+++V GRQ KV+ D+I ++ N PLN
Sbjct: 34 QVIDTEQVQKEVFKS-ISDEVNEEKRQRLFAVVYVNGRQWKVSDGDLINMEGN--LPLNV 90
Query: 240 GDKIKFEKVLLVGGADFTLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFRKIPRKRHTXXX 299
GD+IK EKVL+VGG +F+L GRPLL V V ++EK ++ ++ + +
Sbjct: 91 GDEIKLEKVLMVGGTNFSLFGRPLLDASAVTVDAVVVEKKTTNPELHYVHLNHHQTKFLN 150
Query: 300 XXXTQLTMIRINEI 313
+ T++RI +
Sbjct: 151 WKSDEATVLRIKSV 164
>UNIPROTKB|J9P2W1 [details] [associations]
symbol:MRPL21 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001787 Pfam:PF00829 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 GO:GO:0003735 PANTHER:PTHR21349
GeneTree:ENSGT00390000005535 EMBL:AAEX03011604
Ensembl:ENSCAFT00000049888 OMA:RINDIEL Uniprot:J9P2W1
Length = 206
Score = 196 (74.1 bits), Expect = 3.8e-15, P = 3.8e-15
Identities = 43/99 (43%), Positives = 60/99 (60%)
Query: 197 VNNQIERNEQGRLFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADF 256
VN I + GRLFA++H Q KVT D+I+++ N G++I+ EKVLLVG +F
Sbjct: 61 VNELIATGQYGRLFAVVHFASHQWKVTSEDLILIN-NELDIACGERIRLEKVLLVGADNF 119
Query: 257 TLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFRKIPRKRH 295
TL+G+PLL LV V T+IEK S + N + RK +
Sbjct: 120 TLLGKPLLGKDLVRVEATVIEKTESWPKINMKFKKRKNY 158
>UNIPROTKB|H3BUY0 [details] [associations]
symbol:MRPL21 "39S ribosomal protein L21, mitochondrial"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] InterPro:IPR001787 Pfam:PF00829 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 GO:GO:0003735 PANTHER:PTHR21349
EMBL:AP000808 HGNC:HGNC:14479 ChiTaRS:MRPL21
ProteinModelPortal:H3BUY0 SMR:H3BUY0 Ensembl:ENST00000567045
Bgee:H3BUY0 Uniprot:H3BUY0
Length = 195
Score = 186 (70.5 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 43/91 (47%), Positives = 56/91 (61%)
Query: 201 IERNEQGRLFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVG 260
I + GRLFA++H RQ KVT D+I++ N G++I+ EKVLLVG +FTL+G
Sbjct: 2 IVTGQYGRLFAVVHFASRQWKVTSEDLILI-GNELDLACGERIRLEKVLLVGADNFTLLG 60
Query: 261 RPLLTPGLVNVTGTIIEKDLSHTRT--NFRK 289
+PLL LV V T+IEK S R FRK
Sbjct: 61 KPLLGKDLVRVEATVIEKTESWPRIIMRFRK 91
>UNIPROTKB|F5H7V8 [details] [associations]
symbol:MRPL21 "39S ribosomal protein L21, mitochondrial"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR001787 Pfam:PF00829 GO:GO:0005739 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 GO:GO:0003735 PANTHER:PTHR21349
EMBL:AP000808 HGNC:HGNC:14479 ChiTaRS:MRPL21 IPI:IPI01012984
ProteinModelPortal:F5H7V8 SMR:F5H7V8 Ensembl:ENST00000541279
ArrayExpress:F5H7V8 Bgee:F5H7V8 Uniprot:F5H7V8
Length = 150
Score = 161 (61.7 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 33/68 (48%), Positives = 45/68 (66%)
Query: 197 VNNQIERNEQGRLFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADF 256
VN I + GRLFA++H RQ KVT D+I++ N G++I+ EKVLLVG +F
Sbjct: 83 VNEMIVTGQYGRLFAVVHFASRQWKVTSEDLILI-GNELDLACGERIRLEKVLLVGADNF 141
Query: 257 TLVGRPLL 264
TL+G+PLL
Sbjct: 142 TLLGKPLL 149
>TAIR|locus:2126699 [details] [associations]
symbol:NFD1 "NUCLEAR FUSION DEFECTIVE 1" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005840 "ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
[GO:0000741 "karyogamy" evidence=RCA;IMP] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0009553 "embryo sac development"
evidence=IMP] [GO:0009555 "pollen development" evidence=IMP]
[GO:0009567 "double fertilization forming a zygote and endosperm"
evidence=IMP] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006606
"protein import into nucleus" evidence=RCA] [GO:0009560 "embryo sac
egg cell differentiation" evidence=RCA] [GO:0016572 "histone
phosphorylation" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] InterPro:IPR001787 InterPro:IPR018258
Pfam:PF00829 PROSITE:PS01169 GO:GO:0005739 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0009555 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0009553 EMBL:AL022198 GO:GO:0019843
EMBL:AL161578 GO:GO:0000741 GO:GO:0009567 PANTHER:PTHR21349
TIGRFAMs:TIGR00061 EMBL:AJ278909 EMBL:BT005870 EMBL:AY088563
IPI:IPI00547532 PIR:B85362 RefSeq:NP_567861.1 UniGene:At.23122
ProteinModelPortal:Q8L9A0 SMR:Q8L9A0 IntAct:Q8L9A0 STRING:Q8L9A0
PaxDb:Q8L9A0 PRIDE:Q8L9A0 EnsemblPlants:AT4G30930.1 GeneID:829217
KEGG:ath:AT4G30930 TAIR:At4g30930 eggNOG:NOG314874
InParanoid:Q8L9A0 OMA:ADMEVER PhylomeDB:Q8L9A0
ProtClustDB:CLSN2695801 Genevestigator:Q8L9A0 GermOnline:AT4G30930
Uniprot:Q8L9A0
Length = 270
Score = 152 (58.6 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 38/110 (34%), Positives = 58/110 (52%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
+FAI+ + Q KV+ D I + F +N DK++ KVLL+G A T++GRP+L
Sbjct: 140 VFAIVQIGSHQFKVSNGDSIFTEKLKFCDIN-DKLELTKVLLLGSASQTIIGRPILPDAT 198
Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHTXXXXXXTQLTMIRINEIEIIEK 318
V+ + E L F+K RK + +LT +RI +I+ IEK
Sbjct: 199 VHAV--VEEHALDEKVLIFKKKRRKNYRRTRGHRQELTKLRITDIQGIEK 246
>DICTYBASE|DDB_G0288799 [details] [associations]
symbol:mrpl21 "ribosomal protein L21, mitochondrial"
species:44689 "Dictyostelium discoideum" [GO:0006412 "translation"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0003735 "structural constituent
of ribosome" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR001787 Pfam:PF00829
dictyBase:DDB_G0288799 GO:GO:0005739 GO:GO:0006412
GenomeReviews:CM000154_GR GO:GO:0003723 GO:GO:0005840 GO:GO:0003735
EMBL:AAFI02000125 eggNOG:COG0261 PANTHER:PTHR21349
TIGRFAMs:TIGR00061 RefSeq:XP_636527.1 ProteinModelPortal:Q54IF0
STRING:Q54IF0 EnsemblProtists:DDB0267021 GeneID:8626812
KEGG:ddi:DDB_G0288799 OMA:FAVVHIS Uniprot:Q54IF0
Length = 172
Score = 127 (49.8 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 35/104 (33%), Positives = 53/104 (50%)
Query: 210 FAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGLV 269
FA++H+ G+Q KV DII+ D G+ I +KVLLVG + T++G+P+++
Sbjct: 62 FAVVHISGKQYKVIEGDIIMTDKIQVDV--GEHIVLDKVLLVGTKNETIIGKPIISN--F 117
Query: 270 NVTGTIIEKDLSHTRTNFRKIPRKRHTXXXXXXTQLTMIRINEI 313
V I E+ + T F+ PRK + T IRI I
Sbjct: 118 KVHAYIEEQAKTEHVTIFKHKPRKNYKRTTGFQGLATYIRIGGI 161
>TIGR_CMR|DET_1325 [details] [associations]
symbol:DET_1325 "ribosomal protein L21" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
HAMAP:MF_01363 InterPro:IPR001787 Pfam:PF00829 PROSITE:PS01169
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0019843 eggNOG:COG0261 KO:K02888
PANTHER:PTHR21349 TIGRFAMs:TIGR00061 ProtClustDB:PRK05573
HOGENOM:HOG000036264 OMA:KVTIIKF RefSeq:YP_182036.1
ProteinModelPortal:Q3Z6W3 STRING:Q3Z6W3 GeneID:3229420
KEGG:det:DET1325 PATRIC:21609679
BioCyc:DETH243164:GJNF-1326-MONOMER Uniprot:Q3Z6W3
Length = 132
Score = 103 (41.3 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 25/67 (37%), Positives = 38/67 (56%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
++AII G+Q KVTP ++ VD A GD I+ +KVL++ + +G P + PG
Sbjct: 6 IYAIIESGGKQYKVTPGQLVEVDLFDLA--EGDSIELDKVLMLNDGETVTIGSPTV-PG- 61
Query: 269 VNVTGTI 275
VT T+
Sbjct: 62 AKVTATV 68
>TIGR_CMR|SPO_1990 [details] [associations]
symbol:SPO_1990 "ribosomal protein L21" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] HAMAP:MF_01363
InterPro:IPR001787 InterPro:IPR003583 Pfam:PF00829 PROSITE:PS01169
SMART:SM00278 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677
GO:GO:0006412 GO:GO:0006281 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 HOGENOM:HOG000036265 eggNOG:COG0261 KO:K02888
PANTHER:PTHR21349 TIGRFAMs:TIGR00061 RefSeq:YP_167225.1
ProteinModelPortal:Q5LRY0 GeneID:3193713 KEGG:sil:SPO1990
PATRIC:23377311 OMA:QDELNGG ProtClustDB:PRK12278 Uniprot:Q5LRY0
Length = 193
Score = 116 (45.9 bits), Expect = 8.3e-05, P = 8.3e-05
Identities = 34/106 (32%), Positives = 55/106 (51%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
+FA++ G+Q KV D++ V+ A G+K++F VL++GG D +VG PL+
Sbjct: 1 MFAVLKTGGKQYKVQAGDVLRVEK--LAADAGEKVQFNDVLMLGG-DAPVVGAPLVDGAA 57
Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHTXXXXXXTQ-LTMIRINEI 313
V +I++ +F K RK + Q LT++RI EI
Sbjct: 58 VQAE--VIDQIKGEKLIHFVKRRRKHSSQRTKGHRQKLTLVRITEI 101
>TIGR_CMR|GSU_3236 [details] [associations]
symbol:GSU_3236 "ribosomal protein L21" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] HAMAP:MF_01363
InterPro:IPR001787 InterPro:IPR018258 Pfam:PF00829 PROSITE:PS01169
GO:GO:0006412 GO:GO:0005840 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003735 GO:GO:0019843 HOGENOM:HOG000036265 eggNOG:COG0261
KO:K02888 PANTHER:PTHR21349 TIGRFAMs:TIGR00061 ProtClustDB:PRK05573
OMA:KVTIIKF RefSeq:NP_954277.1 ProteinModelPortal:Q747M9
GeneID:2688294 KEGG:gsu:GSU3236 PATRIC:22029319
BioCyc:GSUL243231:GH27-3214-MONOMER Uniprot:Q747M9
Length = 102
Score = 96 (38.9 bits), Expect = 0.00035, P = 0.00035
Identities = 29/105 (27%), Positives = 52/105 (49%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
++A+I G+Q KV+ D + V+ A GD ++ + VL+VGG + +G PL+ P
Sbjct: 1 MYAVIRTGGKQYKVSEGDFLKVEKLEGAV--GDTVELKDVLMVGG-ETVAIGTPLV-PS- 55
Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHTXXXXXXTQLTMIRINEI 313
+V G I+++ F+ RK T+++I +I
Sbjct: 56 ASVVGRIVDQGKDKKILVFKSKRRKNFRKMYGHRQPRTVLKIEKI 100
>TIGR_CMR|CBU_0385 [details] [associations]
symbol:CBU_0385 "ribosomal protein L21" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] HAMAP:MF_01363 InterPro:IPR001787
InterPro:IPR018258 Pfam:PF00829 PROSITE:PS01169 GO:GO:0006412
GO:GO:0005840 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0003735
GO:GO:0019843 HOGENOM:HOG000036265 eggNOG:COG0261 KO:K02888
PANTHER:PTHR21349 TIGRFAMs:TIGR00061 ProtClustDB:PRK05573
OMA:KVTIIKF RefSeq:NP_819424.2 ProteinModelPortal:Q83EE0 SMR:Q83EE0
GeneID:1208268 KEGG:cbu:CBU_0385 PATRIC:17929467
BioCyc:CBUR227377:GJ7S-388-MONOMER Uniprot:Q83EE0
Length = 115
Score = 93 (37.8 bits), Expect = 0.00074, P = 0.00074
Identities = 28/108 (25%), Positives = 50/108 (46%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
++AII G+Q +VT ++ V+ A G +KF+ VL+V D +G P +
Sbjct: 1 MYAIIKTGGKQYRVTEGQMLKVEK--LAQDVGQSVKFDDVLMVAAGDELHIGTPSVKDAA 58
Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHTXXXXXXTQ-LTMIRINEIEI 315
V T ++++ + K R++H Q T ++I EI +
Sbjct: 59 V--TAEVVDQG-RQAKIEIIKFKRRKHHMKRQGHRQDFTAVKITEIAL 103
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.395 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 384 367 0.00084 117 3 11 22 0.39 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 19
No. of states in DFA: 598 (64 KB)
Total size of DFA: 217 KB (2119 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:05
No. of threads or processors used: 24
Search cpu time: 27.00u 0.07s 27.07t Elapsed: 00:00:11
Total cpu time: 27.00u 0.07s 27.07t Elapsed: 00:00:17
Start: Thu Aug 15 11:41:27 2013 End: Thu Aug 15 11:41:44 2013