RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1265
(384 letters)
>gnl|CDD|201461 pfam00829, Ribosomal_L21p, Ribosomal prokaryotic L21 protein.
Length = 96
Score = 82.9 bits (206), Expect = 9e-20
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
++AII G+Q KV D+I V+ GDKI+F+KVLLVGG +G+P +
Sbjct: 1 MYAIIETGGKQYKVEEGDVIFVEKLDAEV--GDKIEFDKVLLVGGDGKVKIGKPYVEGAK 58
Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMI 308
V ++E F+ RK + + + R T +
Sbjct: 59 --VKAEVLEHGRGKKVIVFKYKRRKNYRKKQGHRQPYTRV 96
>gnl|CDD|235510 PRK05573, rplU, 50S ribosomal protein L21; Validated.
Length = 103
Score = 69.7 bits (172), Expect = 7e-15
Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 12/109 (11%)
Query: 210 FAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGLV 269
+AII G+Q KV D+I V+ GD ++F++VLLVGG + +G P + G
Sbjct: 2 YAIIKTGGKQYKVEEGDVIKVEKLDAEV--GDTVEFDEVLLVGGGEEVKIGAPYV-EG-A 57
Query: 270 NVTGTIIEKDLSHTR----TNFRKIPRKRHTRFRFFRTQLTMIRINEIE 314
VT ++E H R F+ RK + + + R T ++I I
Sbjct: 58 KVTAEVVE----HGRGKKVIVFKYKRRKNYRKKQGHRQPYTKVKITSIN 102
>gnl|CDD|223339 COG0261, RplU, Ribosomal protein L21 [Translation, ribosomal
structure and biogenesis].
Length = 103
Score = 69.6 bits (171), Expect = 7e-15
Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 12/109 (11%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
++AII G+Q KV D+I V+ P GDK++F++VL+VGG + +G P +
Sbjct: 1 MYAIIKTGGKQYKVEEGDVIKVEKLDAEP--GDKVEFDEVLMVGGGEEVKIGAPYVEGAK 58
Query: 269 VNVTGTIIEKDLSHTR----TNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
VT ++E H R F+ RK + + + R T ++I I
Sbjct: 59 --VTAEVVE----HGRGKKVIIFKYKRRKNYRKKQGHRQPYTRVKITGI 101
>gnl|CDD|237034 PRK12278, PRK12278, 50S ribosomal protein L21/unknown domain fusion
protein; Provisional.
Length = 221
Score = 63.3 bits (154), Expect = 1e-11
Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 4/105 (3%)
Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
+FA+I G+Q KV D++ V+ + G+ ++F +VL++G D VG P +
Sbjct: 1 MFAVIKTGGKQYKVQAGDLLRVEKLAAEA--GETVQFGEVLMLGEGDNVTVGAPFVDGAA 58
Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
V +IE+ +F+K R+ R + R LT++RI EI
Sbjct: 59 V--QAEVIEQIKGDKVIHFKKRRRQSSRRTKGHRQLLTLVRITEI 101
>gnl|CDD|129171 TIGR00061, L21, ribosomal protein L21. Eubacterial and chloroplast
[Protein synthesis, Ribosomal proteins: synthesis and
modification].
Length = 101
Score = 55.9 bits (135), Expect = 5e-10
Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Query: 210 FAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGLV 269
+AI+ + G+Q KV + ++ AP GD ++F+KVL+V +G+P + V
Sbjct: 1 YAIVEIGGKQYKVEEGQTVRIEKLDAAP--GDTVEFDKVLMVNKGGDVKIGKPYVEGAKV 58
Query: 270 NVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
+ + ++ RK + + R T +++ +I
Sbjct: 59 --VAEVEKHGRGKKVKVYKYRRRKHSRKKQGHRQPYTKVKVTKI 100
>gnl|CDD|177014 CHL00075, rpl21, ribosomal protein L21.
Length = 108
Score = 42.9 bits (102), Expect = 2e-05
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Query: 210 FAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGLV 269
+AII G+Q V P ++ P G KI +VLL+ L+G+P L
Sbjct: 4 YAIIEAGGKQLWVEPGRFYDINHFPLEP--GTKILLNRVLLIRNESEILIGKPWLEN--A 59
Query: 270 NVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEIEIIEK 318
V G I+ T ++ P+K+ + + R +LT I+ I K
Sbjct: 60 TVKGRILHHFRGKKITVYKMRPKKKTRKKQGHRQKLTRFLIDSISFNGK 108
>gnl|CDD|218829 pfam05963, Cytomega_US3, Cytomegalovirus US3 protein. US3 of human
cytomegalovirus is an endoplasmic reticulum resident
transmembrane glycoprotein that binds to major
histocompatibility complex class I molecules and
prevents their departure. The endoplasmic reticulum
retention signal of the US3 protein is contained in the
luminal domain of the protein.
Length = 187
Score = 28.5 bits (63), Expect = 4.8
Identities = 13/63 (20%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 159 VKVVALTSPLLLPSSSEFTKGTEIVSTKLSSVPVYLNLVNNQIERNEQGRLFAIIHVLGR 218
VK++A +PL+LP+ + +++K ++ + + N+ G+++ V G
Sbjct: 4 VKLLASLAPLILPALDGPPRPHTEITSKSTATRPHFTVEENRC-HIHMGQMYFRGSVSGN 62
Query: 219 QTK 221
T
Sbjct: 63 FTT 65
>gnl|CDD|178520 PLN02932, PLN02932, 3-ketoacyl-CoA synthase.
Length = 478
Score = 28.8 bits (64), Expect = 5.2
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 187 LSSVPVYLNLVNNQIERNEQGRLFAIIHVLGRQTKVTPND--IIIVDSNSFAP 237
L +P+ NL ++ E E + + L R T ++P+D I++V+S++F P
Sbjct: 132 LQCLPLQQNLAVSRKETEEV--IIGAVDNLFRNTGISPSDIGILVVNSSTFNP 182
>gnl|CDD|235963 PRK07203, PRK07203, putative chlorohydrolase/aminohydrolase;
Validated.
Length = 442
Score = 28.4 bits (64), Expect = 6.9
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 8/47 (17%)
Query: 198 NNQI-ERNEQGRLFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKI 243
NN+I ER + G + D+IIVD N PLN D I
Sbjct: 351 NNKIAERYFGAKF-------GILEEGAKADLIIVDYNPPTPLNEDNI 390
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.396
Gapped
Lambda K H
0.267 0.0543 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,073,983
Number of extensions: 1836155
Number of successful extensions: 1303
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1292
Number of HSP's successfully gapped: 15
Length of query: 384
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 285
Effective length of database: 6,546,556
Effective search space: 1865768460
Effective search space used: 1865768460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.3 bits)