RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1265
         (384 letters)



>d2qamr1 b.155.1.1 (R:1-103) Ribosomal protein L21p {Escherichia
           coli [TaxId: 562]}
          Length = 103

 Score = 78.3 bits (193), Expect = 1e-18
 Identities = 17/104 (16%), Positives = 43/104 (41%), Gaps = 4/104 (3%)

Query: 210 FAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGLV 269
           +A+    G+Q +V+    + ++    A   G+ ++F +VL++   +   +G P +     
Sbjct: 2   YAVFQSGGKQHRVSEGQTVRLEKLDIAT--GETVEFAEVLMIANGEEVKIGVPFVDG--G 57

Query: 270 NVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
            +   ++           +   RK + + +  R   T ++I  I
Sbjct: 58  VIKAEVVAHGRGEKVKIVKFRRRKHYRKQQGHRQWFTDVKITGI 101


>d2j01v1 b.155.1.1 (V:1-101) Ribosomal protein L21p {Thermus
           thermophilus [TaxId: 274]}
          Length = 101

 Score = 66.4 bits (162), Expect = 2e-14
 Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 6/104 (5%)

Query: 210 FAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGLV 269
           FAI+   G+Q +V P   + V+     P  G  ++   +LL G  + T+VG P++     
Sbjct: 2   FAIVKTGGKQYRVEPGLKLRVEKLDAEP--GATVELPVLLLGG--EKTVVGTPVVEG--A 55

Query: 270 NVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
           +V   ++           +   + ++ R +  R   T + I EI
Sbjct: 56  SVVAEVLGHGRGKKILVSKFKAKVQYRRKKGHRQPYTELLIKEI 99


>d2zjro1 b.155.1.1 (O:5-98) Ribosomal protein L21p {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 94

 Score = 58.7 bits (142), Expect = 1e-11
 Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 7/97 (7%)

Query: 217 GRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGLVNVTGTII 276
           G+Q +V+  D+I V+S       GDK++ + + +  G + T+ G      G   V   ++
Sbjct: 5   GKQYRVSEGDVIRVESLQGEA--GDKVELKALFV--GGEQTVFGED---AGKYTVQAEVV 57

Query: 277 EKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
           E          +     ++ R    R   T I+I  I
Sbjct: 58  EHGRGKKIYIRKYKSGVQYRRRTGHRQNFTAIKILGI 94


>d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE
           homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId:
           4081]}
          Length = 364

 Score = 28.7 bits (63), Expect = 1.2
 Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 1/26 (3%)

Query: 246 EKVLLVGGADFTLVGRPLLT-PGLVN 270
            + L+   AD    GR  ++ P L  
Sbjct: 307 NRALIEDRADLVAYGRLFISNPDLPK 332


>d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida
           [TaxId: 303]}
          Length = 374

 Score = 28.3 bits (62), Expect = 1.4
 Identities = 8/26 (30%), Positives = 10/26 (38%), Gaps = 1/26 (3%)

Query: 246 EKVLLVGGADFTLVGRPLLT-PGLVN 270
           +  L    AD    GRP +  P L  
Sbjct: 311 QARLDDNTADAVAFGRPFIANPDLPE 336


>d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE
           homolog) {Thale cress (Arabidopsis thaliana), OPR3
           [TaxId: 3702]}
          Length = 380

 Score = 28.4 bits (62), Expect = 1.6
 Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 1/26 (3%)

Query: 246 EKVLLVGGADFTLVGRPLLT-PGLVN 270
            + +  G AD    GR  +  P LV+
Sbjct: 322 MQAVQQGDADLVSYGRLFIANPDLVS 347


>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal
           domain {Escherichia coli [TaxId: 562]}
          Length = 330

 Score = 28.0 bits (61), Expect = 2.0
 Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 1/26 (3%)

Query: 246 EKVLLVGGADFTLVGRPLLT-PGLVN 270
           + +L  G AD   + RP L    L++
Sbjct: 296 DDILSRGDADMVSMARPFLADAELLS 321


>d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal
           domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}
          Length = 340

 Score = 27.7 bits (60), Expect = 2.8
 Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 1/26 (3%)

Query: 246 EKVLLVGGADFTLVGRPLLT-PGLVN 270
            +++  G AD     RP +  P L  
Sbjct: 307 IEIVTKGYADIIGCARPSIADPFLPQ 332


>d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase
           {Enterobacter cloacae [TaxId: 550]}
          Length = 363

 Score = 27.2 bits (59), Expect = 3.6
 Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 1/26 (3%)

Query: 246 EKVLLVGGADFTLVGRPLLT-PGLVN 270
           E ++  G  D    GR  +  P LV 
Sbjct: 308 EDLIGKGLIDAVAFGRDYIANPDLVA 333


>d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus
           subtilis [TaxId: 1423]}
          Length = 337

 Score = 27.2 bits (59), Expect = 3.8
 Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 1/26 (3%)

Query: 246 EKVLLVGGADFTLVGRPLLT-PGLVN 270
           E++L  G AD   +GR LL  P    
Sbjct: 292 EEILQNGRADLIFIGRELLRDPFFAR 317


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.396 

Gapped
Lambda     K      H
   0.267   0.0639    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,358,996
Number of extensions: 62783
Number of successful extensions: 148
Number of sequences better than 10.0: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 11
Length of query: 384
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 297
Effective length of database: 1,213,086
Effective search space: 360286542
Effective search space used: 360286542
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.8 bits)