BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12650
(90 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RZV|A Chain A, The Crystal Structure Of A E280a Mutant Of The Catalytic
Domain Of Amsh
Length = 211
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 35/46 (76%)
Query: 1 VQSELHITHLLIPKQAGTADSCITHHEEEIFACQDKYNLITLGWIH 46
+++E ITH+LIPKQ+ +D C T +EEE+F QD+ LITLGWIH
Sbjct: 77 MRNEFTITHVLIPKQSAGSDYCNTENEEELFLIQDQQGLITLGWIH 122
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 33/46 (71%)
Query: 45 IHWQLHITHLLIPKQAGTADSCITHHEEEIFACQDKYNLITLGWIH 90
+ + ITH+LIPKQ+ +D C T +EEE+F QD+ LITLGWIH
Sbjct: 77 MRNEFTITHVLIPKQSAGSDYCNTENEEELFLIQDQQGLITLGWIH 122
>pdb|3RZU|A Chain A, The Crystal Structure Of The Catalytic Domain Of Amsh
pdb|3RZU|B Chain B, The Crystal Structure Of The Catalytic Domain Of Amsh
pdb|3RZU|C Chain C, The Crystal Structure Of The Catalytic Domain Of Amsh
pdb|3RZU|D Chain D, The Crystal Structure Of The Catalytic Domain Of Amsh
pdb|3RZU|E Chain E, The Crystal Structure Of The Catalytic Domain Of Amsh
pdb|3RZU|F Chain F, The Crystal Structure Of The Catalytic Domain Of Amsh
pdb|3RZU|G Chain G, The Crystal Structure Of The Catalytic Domain Of Amsh
Length = 187
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 35/46 (76%)
Query: 1 VQSELHITHLLIPKQAGTADSCITHHEEEIFACQDKYNLITLGWIH 46
+++E ITH+LIPKQ+ +D C T +EEE+F QD+ LITLGWIH
Sbjct: 53 MRNEFTITHVLIPKQSAGSDYCNTENEEELFLIQDQQGLITLGWIH 98
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 33/46 (71%)
Query: 45 IHWQLHITHLLIPKQAGTADSCITHHEEEIFACQDKYNLITLGWIH 90
+ + ITH+LIPKQ+ +D C T +EEE+F QD+ LITLGWIH
Sbjct: 53 MRNEFTITHVLIPKQSAGSDYCNTENEEELFLIQDQQGLITLGWIH 98
>pdb|2ZNR|A Chain A, Crystal Structure Of The Dub Domain Of Human Amsh-Lp
Length = 178
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 3 SELHITHLLIPKQAGTADSCITHHEEEIFACQDKYNLITLGWIH 46
+E ITH+++PKQ+ D C + EE+F QD+++L+TLGWIH
Sbjct: 46 NEFTITHVIVPKQSAGPDYCDMENVEELFNVQDQHDLLTLGWIH 89
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 46 HWQLHITHLLIPKQAGTADSCITHHEEEIFACQDKYNLITLGWIH 90
H + ITH+++PKQ+ D C + EE+F QD+++L+TLGWIH
Sbjct: 45 HNEFTITHVIVPKQSAGPDYCDMENVEELFNVQDQHDLLTLGWIH 89
>pdb|2ZNV|A Chain A, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex
With Lys63-Linked Ubiquitin Dimer
pdb|2ZNV|D Chain D, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex
With Lys63-Linked Ubiquitin Dimer
Length = 178
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 3 SELHITHLLIPKQAGTADSCITHHEEEIFACQDKYNLITLGWIH 46
+E ITH+++PKQ+ D C + EE+F QD+++L+TLGWIH
Sbjct: 46 NEFTITHVIVPKQSAGPDYCDMENVEELFNVQDQHDLLTLGWIH 89
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 46 HWQLHITHLLIPKQAGTADSCITHHEEEIFACQDKYNLITLGWIH 90
H + ITH+++PKQ+ D C + EE+F QD+++L+TLGWIH
Sbjct: 45 HNEFTITHVIVPKQSAGPDYCDMENVEELFNVQDQHDLLTLGWIH 89
>pdb|3LX9|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LX9|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXA|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXA|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXB|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXB|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXC|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXC|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
Length = 404
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 7/48 (14%)
Query: 41 TLGWIHWQLHITHLLIPKQAGTADSCITHHEEEIFACQDKYNLITLGW 88
T+GW+HW+ + +L ++ DSCI+ E++F + +++ GW
Sbjct: 10 TMGWLHWERFMCNLDCQEE---PDSCIS---EKLFMEMAEL-MVSEGW 50
>pdb|3HG3|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 2.
Substrate Bound
pdb|3HG3|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 2.
Substrate Bound
pdb|3TV8|A Chain A, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3TV8|B Chain B, Pharmacological Chaperoning In Human Alpha-Galactosidase
Length = 404
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 7/48 (14%)
Query: 41 TLGWIHWQLHITHLLIPKQAGTADSCITHHEEEIFACQDKYNLITLGW 88
T+GW+HW+ + +L ++ DSCI+ E++F + +++ GW
Sbjct: 10 TMGWLHWERFMCNLDCQEE---PDSCIS---EKLFMEMAEL-MVSEGW 50
>pdb|1R46|A Chain A, Structure Of Human Alpha-galactosidase
pdb|1R46|B Chain B, Structure Of Human Alpha-galactosidase
pdb|1R47|A Chain A, Structure Of Human Alpha-Galactosidase
pdb|1R47|B Chain B, Structure Of Human Alpha-Galactosidase
pdb|3GXN|A Chain A, Crystal Structure Of Apo Alpha-Galactosidase A At Ph 4.5
pdb|3GXN|B Chain B, Crystal Structure Of Apo Alpha-Galactosidase A At Ph 4.5
pdb|3GXP|A Chain A, Crystal Structure Of Acid-alpha-galactosidase A
Complexed With Galactose At Ph 4.5
pdb|3GXP|B Chain B, Crystal Structure Of Acid-alpha-galactosidase A
Complexed With Galactose At Ph 4.5
pdb|3GXT|A Chain A, Crystal Structure Of Alpha-Galactosidase A At Ph 4.5
Complexed With 1- Deoxygalactonijirimycin
pdb|3GXT|B Chain B, Crystal Structure Of Alpha-Galactosidase A At Ph 4.5
Complexed With 1- Deoxygalactonijirimycin
pdb|3HG2|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 1. Empty
Active Site
pdb|3HG2|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 1. Empty
Active Site
pdb|3HG4|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 3.
Covalent Intermediate
pdb|3HG4|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 3.
Covalent Intermediate
pdb|3HG5|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 4. Product
Bound
pdb|3HG5|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 4. Product
Bound
pdb|3S5Y|A Chain A, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3S5Y|B Chain B, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3S5Z|A Chain A, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3S5Z|B Chain B, Pharmacological Chaperoning In Human Alpha-Galactosidase
Length = 398
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 7/48 (14%)
Query: 41 TLGWIHWQLHITHLLIPKQAGTADSCITHHEEEIFACQDKYNLITLGW 88
T+GW+HW+ + +L ++ DSCI+ E++F + +++ GW
Sbjct: 10 TMGWLHWERFMCNLDCQEE---PDSCIS---EKLFMEMAEL-MVSEGW 50
>pdb|3IL5|A Chain A, Structure Of E. Faecalis Fabh In Complex With
2-({4-Bromo-3-
[(Diethylamino)sulfonyl]benzoyl}amino)benzoic Acid
pdb|3IL5|B Chain B, Structure Of E. Faecalis Fabh In Complex With
2-({4-Bromo-3-
[(Diethylamino)sulfonyl]benzoyl}amino)benzoic Acid
pdb|3IL5|C Chain C, Structure Of E. Faecalis Fabh In Complex With
2-({4-Bromo-3-
[(Diethylamino)sulfonyl]benzoyl}amino)benzoic Acid
pdb|3IL5|D Chain D, Structure Of E. Faecalis Fabh In Complex With
2-({4-Bromo-3-
[(Diethylamino)sulfonyl]benzoyl}amino)benzoic Acid
Length = 343
Score = 25.8 bits (55), Expect = 7.3, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
Query: 20 DSCITHHE-EEIFACQDKYNLITLGWIHWQLHITHLLIPKQAGTADSC 66
++C+T+H+ E+ D+ WIH + I+ I Q T+D C
Sbjct: 36 ENCVTNHQLSEMMDTSDE-------WIHSRTGISERRIVTQENTSDLC 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.460
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,117,960
Number of Sequences: 62578
Number of extensions: 107432
Number of successful extensions: 203
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 193
Number of HSP's gapped (non-prelim): 18
length of query: 90
length of database: 14,973,337
effective HSP length: 57
effective length of query: 33
effective length of database: 11,406,391
effective search space: 376410903
effective search space used: 376410903
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)