BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12650
(90 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q63ZM7|STABP_XENLA STAM-binding protein-like OS=Xenopus laevis GN=stambp PE=2 SV=1
Length = 416
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/46 (54%), Positives = 34/46 (73%)
Query: 1 VQSELHITHLLIPKQAGTADSCITHHEEEIFACQDKYNLITLGWIH 46
+Q+E +TH+++PKQ+G D C T EEE+F QD+ LITLGWIH
Sbjct: 282 LQNEFTVTHVIVPKQSGGPDYCNTESEEELFLIQDQQGLITLGWIH 327
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/43 (53%), Positives = 31/43 (72%)
Query: 48 QLHITHLLIPKQAGTADSCITHHEEEIFACQDKYNLITLGWIH 90
+ +TH+++PKQ+G D C T EEE+F QD+ LITLGWIH
Sbjct: 285 EFTVTHVIVPKQSGGPDYCNTESEEELFLIQDQQGLITLGWIH 327
>sp|O95630|STABP_HUMAN STAM-binding protein OS=Homo sapiens GN=STAMBP PE=1 SV=1
Length = 424
Score = 60.8 bits (146), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/46 (56%), Positives = 35/46 (76%)
Query: 1 VQSELHITHLLIPKQAGTADSCITHHEEEIFACQDKYNLITLGWIH 46
+++E ITH+LIPKQ+ +D C T +EEE+F QD+ LITLGWIH
Sbjct: 290 MRNEFTITHVLIPKQSAGSDYCNTENEEELFLIQDQQGLITLGWIH 335
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/43 (58%), Positives = 32/43 (74%)
Query: 48 QLHITHLLIPKQAGTADSCITHHEEEIFACQDKYNLITLGWIH 90
+ ITH+LIPKQ+ +D C T +EEE+F QD+ LITLGWIH
Sbjct: 293 EFTITHVLIPKQSAGSDYCNTENEEELFLIQDQQGLITLGWIH 335
>sp|Q5PNU3|AMSH3_ARATH AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana GN=AMSH3
PE=1 SV=2
Length = 507
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 26/42 (61%), Positives = 31/42 (73%)
Query: 5 LHITHLLIPKQAGTADSCITHHEEEIFACQDKYNLITLGWIH 46
HIT L+IPKQ T+DSC T +EEEIF QD+ +L LGWIH
Sbjct: 370 FHITTLIIPKQESTSDSCQTLNEEEIFEVQDRLSLFPLGWIH 411
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 26/42 (61%), Positives = 31/42 (73%)
Query: 49 LHITHLLIPKQAGTADSCITHHEEEIFACQDKYNLITLGWIH 90
HIT L+IPKQ T+DSC T +EEEIF QD+ +L LGWIH
Sbjct: 370 FHITTLIIPKQESTSDSCQTLNEEEIFEVQDRLSLFPLGWIH 411
>sp|Q9CQ26|STABP_MOUSE STAM-binding protein OS=Mus musculus GN=Stambp PE=2 SV=1
Length = 424
Score = 59.3 bits (142), Expect = 7e-09, Method: Composition-based stats.
Identities = 26/46 (56%), Positives = 33/46 (71%)
Query: 1 VQSELHITHLLIPKQAGTADSCITHHEEEIFACQDKYNLITLGWIH 46
+++E ITH+LIP+Q G D C T +EEEIF QD L+TLGWIH
Sbjct: 290 MRNEFTITHVLIPRQNGGPDYCHTENEEEIFFMQDDLGLLTLGWIH 335
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/43 (58%), Positives = 30/43 (69%)
Query: 48 QLHITHLLIPKQAGTADSCITHHEEEIFACQDKYNLITLGWIH 90
+ ITH+LIP+Q G D C T +EEEIF QD L+TLGWIH
Sbjct: 293 EFTITHVLIPRQNGGPDYCHTENEEEIFFMQDDLGLLTLGWIH 335
>sp|Q8R424|STABP_RAT STAM-binding protein OS=Rattus norvegicus GN=Stambp PE=2 SV=1
Length = 424
Score = 58.9 bits (141), Expect = 8e-09, Method: Composition-based stats.
Identities = 26/46 (56%), Positives = 33/46 (71%)
Query: 1 VQSELHITHLLIPKQAGTADSCITHHEEEIFACQDKYNLITLGWIH 46
+++E ITH+LIP+Q G D C T +EEEIF QD L+TLGWIH
Sbjct: 290 MRNEFTITHVLIPRQNGGPDYCHTENEEEIFFMQDDLGLLTLGWIH 335
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/43 (58%), Positives = 30/43 (69%)
Query: 48 QLHITHLLIPKQAGTADSCITHHEEEIFACQDKYNLITLGWIH 90
+ ITH+LIP+Q G D C T +EEEIF QD L+TLGWIH
Sbjct: 293 EFTITHVLIPRQNGGPDYCHTENEEEIFFMQDDLGLLTLGWIH 335
>sp|Q9P371|SST2_SCHPO AMSH-like protease sst2 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=sst2 PE=1 SV=1
Length = 435
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/45 (55%), Positives = 32/45 (71%)
Query: 2 QSELHITHLLIPKQAGTADSCITHHEEEIFACQDKYNLITLGWIH 46
Q+ ITHL+IP Q T+D+C T E +F QDK+NL+TLGWIH
Sbjct: 297 QNAFFITHLVIPLQEATSDTCGTTDEASLFEFQDKHNLLTLGWIH 341
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/60 (50%), Positives = 38/60 (63%), Gaps = 5/60 (8%)
Query: 36 KYNLITLGWIHWQLH-----ITHLLIPKQAGTADSCITHHEEEIFACQDKYNLITLGWIH 90
K NL T G + +L ITHL+IP Q T+D+C T E +F QDK+NL+TLGWIH
Sbjct: 282 KKNLETCGILCGKLRQNAFFITHLVIPLQEATSDTCGTTDEASLFEFQDKHNLLTLGWIH 341
>sp|Q8VYB5|AMSH1_ARATH AMSH-like ubiquitin thioesterase 1 OS=Arabidopsis thaliana GN=AMSH1
PE=2 SV=1
Length = 507
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/43 (58%), Positives = 31/43 (72%)
Query: 48 QLHITHLLIPKQAGTADSCITHHEEEIFACQDKYNLITLGWIH 90
+ +IT L+IPKQ T+DSC +EEEIF QDK +L LGWIH
Sbjct: 369 KFYITALIIPKQESTSDSCQATNEEEIFEVQDKQSLFPLGWIH 411
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/43 (58%), Positives = 31/43 (72%)
Query: 4 ELHITHLLIPKQAGTADSCITHHEEEIFACQDKYNLITLGWIH 46
+ +IT L+IPKQ T+DSC +EEEIF QDK +L LGWIH
Sbjct: 369 KFYITALIIPKQESTSDSCQATNEEEIFEVQDKQSLFPLGWIH 411
>sp|Q6TH47|STBPA_DANRE STAM-binding protein-like A OS=Danio rerio GN=stambpa PE=2 SV=3
Length = 418
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/46 (50%), Positives = 34/46 (73%)
Query: 1 VQSELHITHLLIPKQAGTADSCITHHEEEIFACQDKYNLITLGWIH 46
+++ +TH+++PKQ G D C T +EEE+F QD+ +LITLGWIH
Sbjct: 284 MKNAFTVTHVIVPKQCGGPDYCDTENEEELFLIQDQNDLITLGWIH 329
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/40 (57%), Positives = 31/40 (77%)
Query: 51 ITHLLIPKQAGTADSCITHHEEEIFACQDKYNLITLGWIH 90
+TH+++PKQ G D C T +EEE+F QD+ +LITLGWIH
Sbjct: 290 VTHVIVPKQCGGPDYCDTENEEELFLIQDQNDLITLGWIH 329
>sp|Q5R558|STALP_PONAB AMSH-like protease OS=Pongo abelii GN=STAMBPL1 PE=2 SV=1
Length = 436
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 2 QSELHITHLLIPKQAGTADSCITHHEEEIFACQDKYNLITLGWIH 46
+E ITH+++PKQ+ D C + EE+F QD+++L+TLGWIH
Sbjct: 303 HNEFTITHVIVPKQSAGPDYCDVENVEELFNVQDQHDLLTLGWIH 347
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 46 HWQLHITHLLIPKQAGTADSCITHHEEEIFACQDKYNLITLGWIH 90
H + ITH+++PKQ+ D C + EE+F QD+++L+TLGWIH
Sbjct: 303 HNEFTITHVIVPKQSAGPDYCDVENVEELFNVQDQHDLLTLGWIH 347
>sp|Q96FJ0|STALP_HUMAN AMSH-like protease OS=Homo sapiens GN=STAMBPL1 PE=1 SV=2
Length = 436
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 2 QSELHITHLLIPKQAGTADSCITHHEEEIFACQDKYNLITLGWIH 46
+E ITH+++PKQ+ D C + EE+F QD+++L+TLGWIH
Sbjct: 303 HNEFTITHVIVPKQSAGPDYCDMENVEELFNVQDQHDLLTLGWIH 347
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 46 HWQLHITHLLIPKQAGTADSCITHHEEEIFACQDKYNLITLGWIH 90
H + ITH+++PKQ+ D C + EE+F QD+++L+TLGWIH
Sbjct: 303 HNEFTITHVIVPKQSAGPDYCDMENVEELFNVQDQHDLLTLGWIH 347
>sp|Q76N33|STALP_MOUSE AMSH-like protease OS=Mus musculus GN=Stambpl1 PE=2 SV=1
Length = 436
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 31/45 (68%)
Query: 2 QSELHITHLLIPKQAGTADSCITHHEEEIFACQDKYNLITLGWIH 46
+E ITH+++PKQ+ D C + EE+F QD++ L+TLGWIH
Sbjct: 303 HNEFTITHVVVPKQSAGPDYCDVENVEELFNVQDQHGLLTLGWIH 347
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 31/45 (68%)
Query: 46 HWQLHITHLLIPKQAGTADSCITHHEEEIFACQDKYNLITLGWIH 90
H + ITH+++PKQ+ D C + EE+F QD++ L+TLGWIH
Sbjct: 303 HNEFTITHVVVPKQSAGPDYCDVENVEELFNVQDQHGLLTLGWIH 347
>sp|Q54Q40|D1039_DICDI Probable ubiquitin thioesterase DG1039 OS=Dictyostelium discoideum
GN=DG1039 PE=3 SV=1
Length = 715
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/42 (54%), Positives = 29/42 (69%)
Query: 5 LHITHLLIPKQAGTADSCITHHEEEIFACQDKYNLITLGWIH 46
IT ++IPKQ GT D+C T E EIF Q + +L+TLGWIH
Sbjct: 574 FRITTIIIPKQEGTTDTCNTIEEHEIFEYQLENDLLTLGWIH 615
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/42 (54%), Positives = 29/42 (69%)
Query: 49 LHITHLLIPKQAGTADSCITHHEEEIFACQDKYNLITLGWIH 90
IT ++IPKQ GT D+C T E EIF Q + +L+TLGWIH
Sbjct: 574 FRITTIIIPKQEGTTDTCNTIEEHEIFEYQLENDLLTLGWIH 615
>sp|Q6NKP9|AMSH2_ARATH AMSH-like ubiquitin thioesterase 2 OS=Arabidopsis thaliana GN=AMSH2
PE=2 SV=1
Length = 223
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 5 LHITHLLIPKQAGTADSCITHHEEEIFACQDKYNLITLGWIH 46
++T L+IPKQ T++SC +E E+F+ Q++ L +GWIH
Sbjct: 86 FYVTTLIIPKQESTSNSCQAMNEVEVFSIQNERELYPVGWIH 127
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 49 LHITHLLIPKQAGTADSCITHHEEEIFACQDKYNLITLGWIH 90
++T L+IPKQ T++SC +E E+F+ Q++ L +GWIH
Sbjct: 86 FYVTTLIIPKQESTSNSCQAMNEVEVFSIQNERELYPVGWIH 127
>sp|P09260|GH_VZVD Envelope glycoprotein H OS=Varicella-zoster virus (strain Dumas)
GN=gH PE=3 SV=1
Length = 841
Score = 33.5 bits (75), Expect = 0.35, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 18/79 (22%)
Query: 4 ELHITHLL--IPKQAGTADSCITH-HEEEIFACQDKYNLITLGWIHWQLHITHLLIPKQA 60
E+H+ +LL IP + G + T E EIF K +I W LHI H +P
Sbjct: 586 EIHVMNLLSAIPTRPGLNEVLHTQLDESEIFDAAFKTMMIFTTWTAKDLHILHTHVP--- 642
Query: 61 GTADSCITHHEEEIFACQD 79
E+F CQD
Sbjct: 643 ------------EVFTCQD 649
>sp|Q775J3|GH_VZVO Envelope glycoprotein H OS=Varicella-zoster virus (strain Oka
vaccine) GN=gH PE=3 SV=1
Length = 841
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 18/79 (22%)
Query: 4 ELHITHLL--IPKQAGTADSCITH-HEEEIFACQDKYNLITLGWIHWQLHITHLLIPKQA 60
E+H+ +LL IP + G + T E EIF K +I W LHI H +P
Sbjct: 586 EIHVMNLLSAIPTRPGLNEVLHTQLDESEIFDAAFKTMMIFTTWTAKDLHILHTHVP--- 642
Query: 61 GTADSCITHHEEEIFACQD 79
E+F CQD
Sbjct: 643 ------------EVFTCQD 649
>sp|Q8SRE0|SYC_ENCCU Cysteine--tRNA ligase OS=Encephalitozoon cuniculi (strain GB-M1)
GN=ECU08_0490 PE=1 SV=1
Length = 480
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 15 QAGTADSCITHHEEEIFACQDKYNLITLGWIHWQLHITHLLI 56
AG D HHE EI CQ + + W+ LH HL I
Sbjct: 226 HAGGVDLAFPHHENEIAQCQAYF--MQEPWVKCFLHTGHLNI 265
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.137 0.460
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,100,388
Number of Sequences: 539616
Number of extensions: 1292198
Number of successful extensions: 2490
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2463
Number of HSP's gapped (non-prelim): 30
length of query: 90
length of database: 191,569,459
effective HSP length: 60
effective length of query: 30
effective length of database: 159,192,499
effective search space: 4775774970
effective search space used: 4775774970
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)