Query psy12650
Match_columns 90
No_of_seqs 101 out of 240
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 16:03:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12650.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12650hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2og4_A PRE-mRNA-splicing facto 99.4 6.1E-14 2.1E-18 107.6 3.2 61 29-90 49-117 (254)
2 2og4_A PRE-mRNA-splicing facto 99.3 2.7E-13 9.2E-18 104.0 -1.0 45 3-47 74-118 (254)
3 2p8r_A PRP8, PRE-mRNA-splicing 99.2 6.3E-12 2.1E-16 97.2 3.9 59 29-90 50-116 (273)
4 3rzv_A STAM-binding protein; u 99.2 4.1E-11 1.4E-15 89.1 6.2 62 29-90 53-122 (211)
5 2p8r_A PRP8, PRE-mRNA-splicing 99.0 2.3E-11 7.9E-16 94.1 -0.0 43 3-47 75-117 (273)
6 2znr_A AMSH-like protease; met 99.0 3.5E-10 1.2E-14 81.2 5.0 63 28-90 19-89 (178)
7 3sbg_A PRE-mRNA-splicing facto 98.7 5.3E-09 1.8E-13 87.2 4.4 57 31-90 362-428 (565)
8 3rzv_A STAM-binding protein; u 98.7 1.8E-08 6.1E-13 74.9 4.8 46 2-47 78-123 (211)
9 3sbg_A PRE-mRNA-splicing facto 98.6 4.8E-09 1.6E-13 87.4 -0.4 54 2-57 384-443 (565)
10 2znr_A AMSH-like protease; met 98.5 1.2E-07 4.2E-12 67.9 4.1 45 3-47 46-90 (178)
11 2kks_A Uncharacterized protein 96.6 0.0066 2.3E-07 41.1 6.6 61 29-90 11-81 (146)
12 2kcq_A MOV34/MPN/PAD-1 family; 95.5 0.017 5.9E-07 39.3 4.4 54 36-90 18-83 (153)
13 4b4t_V 26S proteasome regulato 91.9 0.21 7.1E-06 38.1 4.7 54 37-90 45-109 (306)
14 2kks_A Uncharacterized protein 89.8 0.65 2.2E-05 31.1 5.2 43 4-47 36-82 (146)
15 2kcq_A MOV34/MPN/PAD-1 family; 87.7 0.82 2.8E-05 30.8 4.6 44 3-47 35-84 (153)
16 4b4t_V 26S proteasome regulato 86.7 0.21 7.3E-06 38.0 1.2 44 4-47 62-110 (306)
17 1oi0_A AF2198, hypothetical pr 72.1 3.2 0.00011 26.8 3.0 48 35-90 20-70 (124)
No 1
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae}
Probab=99.41 E-value=6.1e-14 Score=107.57 Aligned_cols=61 Identities=23% Similarity=0.284 Sum_probs=54.6
Q ss_pred hhhhhhhhCCceEEeeeee--------eEEEeEEeeeccccCCCCceecchhHHHHhhhcCCceEeeeeC
Q psy12650 29 EIFACQDKYNLITLGWIHW--------QLHITHLLIPKQAGTADSCITHHEEEIFACQDKYNLITLGWIH 90 (90)
Q Consensus 29 ~~f~~~~~~~l~tcGwIht--------~~~it~l~iP~Q~~t~dsC~t~~Ee~~f~~~~~~~l~~lGWIH 90 (90)
.++.+++.+ .++||+|+| ++.|++++||+|.|++|+|++.+|++.++|+|.+||.+|||||
T Consensus 49 kFi~IAD~~-Tq~cG~LyG~~~~d~~~v~eI~~ivippQ~gt~~s~~~~~~~p~~~~~~l~dLe~LGWIH 117 (254)
T 2og4_A 49 KFIEISDVK-IQVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQISNIPDIGDLPDTEGLELLGWIH 117 (254)
T ss_dssp HHHHTSCSS-SCCEEEEEEEECSSCTTEEEEEEEECCCEEEETTEEEECCCCCCTTSTTCTTCEEEEEEE
T ss_pred HHHHHhhcc-ceEEEEEEccCCCCCCCeEEEEEEEECCccCCCceEECCCcCccccchhhcCCEecceEe
Confidence 445555554 689999999 5679999999999999999999999999999999999999999
No 2
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae}
Probab=99.27 E-value=2.7e-13 Score=104.00 Aligned_cols=45 Identities=27% Similarity=0.321 Sum_probs=43.9
Q ss_pred ccEEEEEEEeeCcccCCCcccccchhhhhhhhhhCCceEEeeeee
Q psy12650 3 SELHITHLLIPKQAGTADSCITHHEEEIFACQDKYNLITLGWIHW 47 (90)
Q Consensus 3 ~~~~it~liIPkQ~~t~dsC~t~~Ee~~f~~~~~~~l~tcGwIht 47 (90)
+++.|++++||+|.|++|+|++.+|+..++|++.+||+++|||||
T Consensus 74 ~v~eI~~ivippQ~gt~~s~~~~~~~p~~~~~~l~dLe~LGWIHT 118 (254)
T 2og4_A 74 KVKEIKTVVLVPQLGHVGSVQISNIPDIGDLPDTEGLELLGWIHT 118 (254)
T ss_dssp TEEEEEEEECCCEEEETTEEEECCCCCCTTSTTCTTCEEEEEEEE
T ss_pred CeEEEEEEEECCccCCCceEECCCcCccccchhhcCCEecceEee
Confidence 578899999999999999999999999999999999999999999
No 3
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A {Caenorhabditis elegans} PDB: 2p87_A
Probab=99.21 E-value=6.3e-12 Score=97.23 Aligned_cols=59 Identities=15% Similarity=0.229 Sum_probs=51.9
Q ss_pred hhhhhhhhCCceEEeeeee--------eEEEeEEeeeccccCCCCceecchhHHHHhhhcCCceEeeeeC
Q psy12650 29 EIFACQDKYNLITLGWIHW--------QLHITHLLIPKQAGTADSCITHHEEEIFACQDKYNLITLGWIH 90 (90)
Q Consensus 29 ~~f~~~~~~~l~tcGwIht--------~~~it~l~iP~Q~~t~dsC~t~~Ee~~f~~~~~~~l~~lGWIH 90 (90)
.++.+++.+ .++||+|+| +..|++++||+|.|++|+|++.+++..++|+ ++|.+|||||
T Consensus 50 kFi~IADlr-Tq~~G~LyG~s~~d~~~vkeI~~ivipPQ~gt~~sv~~~~~~p~~~~l--~dLe~LGWIH 116 (273)
T 2p8r_A 50 KFITISDLR-TQIAGFMYGVSPPDNPQVKEIRCIVLVPQTGSHQQVNLPTQLPDHELL--RDFEPLGWMH 116 (273)
T ss_dssp HHHHTSCSS-SCCEEEEEEECCTTCTTEEEEEEEECCSBEECSSCEECCSSCCCCTTT--TTSEEEEEEE
T ss_pred HHHHHhhcc-ceEEEEEeccCCCCCCCeEEEEEEEECCccCCCceEECCCcCcchhhh--ccccccceEe
Confidence 344555544 689999999 5789999999999999999999999999997 9999999999
No 4
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A
Probab=99.16 E-value=4.1e-11 Score=89.08 Aligned_cols=62 Identities=44% Similarity=0.717 Sum_probs=56.1
Q ss_pred hhhhhhhh---CCceEEeeeee-----eEEEeEEeeeccccCCCCceecchhHHHHhhhcCCceEeeeeC
Q psy12650 29 EIFACQDK---YNLITLGWIHW-----QLHITHLLIPKQAGTADSCITHHEEEIFACQDKYNLITLGWIH 90 (90)
Q Consensus 29 ~~f~~~~~---~~l~tcGwIht-----~~~it~l~iP~Q~~t~dsC~t~~Ee~~f~~~~~~~l~~lGWIH 90 (90)
+++..++. +++|+||+|.| .+.|+.+++|+|.+++++|.+.+++++|++++++|+..+||+|
T Consensus 53 kfL~~A~~~tp~~~EvcGlL~Gk~~~~~~~I~~v~~ppq~gt~~~v~~~~~~e~~~~~~~~~l~~vGWyH 122 (211)
T 3rzv_A 53 QFLQLASANTARGVATCGILCGKLMRNEFTITHVLIPKQSAGSDYCNTENEEELFLIQDQQGLITLGWIH 122 (211)
T ss_dssp HHHHHHHHHHHTTCCCEEEEEEEEETTEEEEEEEEECCEEECSSCEEECCHHHHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHhCCCCCceEEEEEEeEcCCCCEEEEEEEeCCccCCCCceeccChHHHHHHHhhCCCEEEEEEe
Confidence 45555555 57999999999 6789999999999999999999999999999999999999998
No 5
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A {Caenorhabditis elegans} PDB: 2p87_A
Probab=99.03 E-value=2.3e-11 Score=94.06 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=41.2
Q ss_pred ccEEEEEEEeeCcccCCCcccccchhhhhhhhhhCCceEEeeeee
Q psy12650 3 SELHITHLLIPKQAGTADSCITHHEEEIFACQDKYNLITLGWIHW 47 (90)
Q Consensus 3 ~~~~it~liIPkQ~~t~dsC~t~~Ee~~f~~~~~~~l~tcGwIht 47 (90)
+++.|++++||+|.|++|+|++.+++..++|. +||+++|||||
T Consensus 75 ~vkeI~~ivipPQ~gt~~sv~~~~~~p~~~~l--~dLe~LGWIHT 117 (273)
T 2p8r_A 75 QVKEIRCIVLVPQTGSHQQVNLPTQLPDHELL--RDFEPLGWMHT 117 (273)
T ss_dssp TEEEEEEEECCSBEECSSCEECCSSCCCCTTT--TTSEEEEEEEE
T ss_pred CeEEEEEEEECCccCCCceEECCCcCcchhhh--ccccccceEee
Confidence 57899999999999999999999999999997 99999999999
No 6
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A
Probab=99.00 E-value=3.5e-10 Score=81.21 Aligned_cols=63 Identities=35% Similarity=0.660 Sum_probs=56.3
Q ss_pred hhhhhhhhh---CCceEEeeeee-----eEEEeEEeeeccccCCCCceecchhHHHHhhhcCCceEeeeeC
Q psy12650 28 EEIFACQDK---YNLITLGWIHW-----QLHITHLLIPKQAGTADSCITHHEEEIFACQDKYNLITLGWIH 90 (90)
Q Consensus 28 e~~f~~~~~---~~l~tcGwIht-----~~~it~l~iP~Q~~t~dsC~t~~Ee~~f~~~~~~~l~~lGWIH 90 (90)
.+++..+++ ++.|+||+|.| .+.|+.+++|.|.+++++|.+.++++.+++++++||..|||+|
T Consensus 19 ~k~l~hA~~~~~~~~EvcGlL~G~~~~~~~~V~~v~~~pq~~t~~~~~~~~~~e~~~~~~~~~l~~vGwyH 89 (178)
T 2znr_A 19 HKFLQLAESNTVRGIETCGILCGKLTHNEFTITHVIVPKQSAGPDYCDMENVEELFNVQDQHDLLTLGWIH 89 (178)
T ss_dssp HHHHHHHHHHHTTTCCCEEEEEEEEETTEEEEEEEEECCEEEETTEEEECCHHHHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHHhCCCCCceEEEEEeeEecCCCeEEEEEEeCCcCCCCCeeccCCHHHHHHHHHhCCCEEEEEEe
Confidence 355566665 36999999999 6789999999999999999999999999999999999999998
No 7
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae}
Probab=98.75 E-value=5.3e-09 Score=87.21 Aligned_cols=57 Identities=21% Similarity=0.257 Sum_probs=46.5
Q ss_pred hhhhhhCCceEEeeeee--------eEEEeEEeeeccccCCCCceec--chhHHHHhhhcCCceEeeeeC
Q psy12650 31 FACQDKYNLITLGWIHW--------QLHITHLLIPKQAGTADSCITH--HEEEIFACQDKYNLITLGWIH 90 (90)
Q Consensus 31 f~~~~~~~l~tcGwIht--------~~~it~l~iP~Q~~t~dsC~t~--~Ee~~f~~~~~~~l~~lGWIH 90 (90)
+.++|. +.++||+|+| +..|+++++|.|.|++|+|++. .++++|.| .+||.+|||||
T Consensus 362 I~IADl-rTQicGyLyG~sp~dn~nVkEI~cIVipPQ~Gt~~sv~lp~lp~he~~~~--l~dLe~LGWIH 428 (565)
T 3sbg_A 362 IEISDV-KIQVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQISNIPDIGDLPD--TEGLELLGWIH 428 (565)
T ss_dssp HHHSCS-SSCCEEEEEEEEETTEEEEEEEEEEECCCEEECSSCEEECCCCCCTTSTT--CTTCEEEEEEE
T ss_pred HHHhhc-cceeEEEEecCCCCCCCCeEEEEEEEECCccCCCceEECCCCCccccccc--cccCEecceee
Confidence 333433 3479999998 6899999999999999999998 55555555 69999999999
No 8
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A
Probab=98.67 E-value=1.8e-08 Score=74.88 Aligned_cols=46 Identities=57% Similarity=0.930 Sum_probs=43.8
Q ss_pred cccEEEEEEEeeCcccCCCcccccchhhhhhhhhhCCceEEeeeee
Q psy12650 2 QSELHITHLLIPKQAGTADSCITHHEEEIFACQDKYNLITLGWIHW 47 (90)
Q Consensus 2 ~~~~~it~liIPkQ~~t~dsC~t~~Ee~~f~~~~~~~l~tcGwIht 47 (90)
.|.+.|+.+++|+|.+++++|.+.+++++|+++.++|++.+||+|+
T Consensus 78 ~~~~~I~~v~~ppq~gt~~~v~~~~~~e~~~~~~~~~l~~vGWyHS 123 (211)
T 3rzv_A 78 RNEFTITHVLIPKQSAGSDYCNTENEEELFLIQDQQGLITLGWIHT 123 (211)
T ss_dssp TTEEEEEEEEECCEEECSSCEEECCHHHHHHHHHHHTCEEEEEEEE
T ss_pred CCCEEEEEEEeCCccCCCCceeccChHHHHHHHhhCCCEEEEEEeC
Confidence 3578999999999999999999999999999999999999999998
No 9
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae}
Probab=98.59 E-value=4.8e-09 Score=87.44 Aligned_cols=54 Identities=19% Similarity=0.194 Sum_probs=42.7
Q ss_pred cccEEEEEEEeeCcccCCCccccc--chhhhhhhhhhCCceEEeeeee----eEEEeEEeee
Q psy12650 2 QSELHITHLLIPKQAGTADSCITH--HEEEIFACQDKYNLITLGWIHW----QLHITHLLIP 57 (90)
Q Consensus 2 ~~~~~it~liIPkQ~~t~dsC~t~--~Ee~~f~~~~~~~l~tcGwIht----~~~it~l~iP 57 (90)
.|++.|+++++|+|.|++|+|++. .++++|.| .+||+++||||| ..+++...+.
T Consensus 384 ~nVkEI~cIVipPQ~Gt~~sv~lp~lp~he~~~~--l~dLe~LGWIHTqp~et~fLSs~Dl~ 443 (565)
T 3sbg_A 384 PKVKEIKTVVLVPQLGHVGSVQISNIPDIGDLPD--TEGLELLGWIHTQTEELKFMAASEVA 443 (565)
T ss_dssp EEEEEEEEEECCCEEECSSCEEECCCCCCTTSTT--CTTCEEEEEEEEESSCCSSCCHHHHH
T ss_pred CCeEEEEEEEECCccCCCceEECCCCCccccccc--cccCEecceeeecCCcccccCHHHHH
Confidence 368999999999999999999998 55555555 799999999999 3455544443
No 10
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A
Probab=98.46 E-value=1.2e-07 Score=67.86 Aligned_cols=45 Identities=47% Similarity=0.863 Sum_probs=43.4
Q ss_pred ccEEEEEEEeeCcccCCCcccccchhhhhhhhhhCCceEEeeeee
Q psy12650 3 SELHITHLLIPKQAGTADSCITHHEEEIFACQDKYNLITLGWIHW 47 (90)
Q Consensus 3 ~~~~it~liIPkQ~~t~dsC~t~~Ee~~f~~~~~~~l~tcGwIht 47 (90)
+.+.|+.+++|.|.+++++|.+.++++.+++++++|++.+||+|+
T Consensus 46 ~~~~V~~v~~~pq~~t~~~~~~~~~~e~~~~~~~~~l~~vGwyHS 90 (178)
T 2znr_A 46 NEFTITHVIVPKQSAGPDYCDMENVEELFNVQDQHDLLTLGWIHT 90 (178)
T ss_dssp TEEEEEEEEECCEEEETTEEEECCHHHHHHHHHHHTCEEEEEEEE
T ss_pred CCeEEEEEEeCCcCCCCCeeccCCHHHHHHHHHhCCCEEEEEEeC
Confidence 578999999999999999999999999999999999999999999
No 11
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense}
Probab=96.60 E-value=0.0066 Score=41.07 Aligned_cols=61 Identities=13% Similarity=0.162 Sum_probs=41.7
Q ss_pred hhhhhhhh-CCceEEeeeeee-----EEEeEEee-eccccCCCCceecchhHHHHhh---hcCCceEeeeeC
Q psy12650 29 EIFACQDK-YNLITLGWIHWQ-----LHITHLLI-PKQAGTADSCITHHEEEIFACQ---DKYNLITLGWIH 90 (90)
Q Consensus 29 ~~f~~~~~-~~l~tcGwIht~-----~~it~l~i-P~Q~~t~dsC~t~~Ee~~f~~~---~~~~l~~lGWIH 90 (90)
++.+.+.+ ...|.||+|-+. ..|+.++. |+...+++.+ ..+.+++++.+ +++|+..+||.|
T Consensus 11 ~i~~ha~~~~p~E~cGlL~G~~~~~~~~v~~~~p~~n~~~~~~~f-~~dp~~~~~~~~~~~~~g~~ivG~~H 81 (146)
T 2kks_A 11 EMLAHARQALPNEACGLLGGRRDGDDRWVERVYPLNNLDQSPEHF-SMDPREQLTAVKDMRKNGWVMLGNFH 81 (146)
T ss_dssp HHHHHHHHHTTSCEEEEEEEEEETTEEEEEEEECCCCCSCCSSSC-CCCHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHhcCCcceEEEEEEEEcCCCcEEEEEEECCCcCCCCceE-EECHHHHHHHHHHHHHCCCEEEEEEe
Confidence 34444443 678999999984 56666543 4455566654 55566666665 678999999998
No 12
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855}
Probab=95.51 E-value=0.017 Score=39.26 Aligned_cols=54 Identities=13% Similarity=0.135 Sum_probs=38.2
Q ss_pred hCCceEEeeeeeeE------EEeEEeeeccc---cCCCCceecchhHHHHhh---hcCCceEeeeeC
Q psy12650 36 KYNLITLGWIHWQL------HITHLLIPKQA---GTADSCITHHEEEIFACQ---DKYNLITLGWIH 90 (90)
Q Consensus 36 ~~~l~tcGwIht~~------~it~l~iP~Q~---~t~dsC~t~~Ee~~f~~~---~~~~l~~lGWIH 90 (90)
....|.||+|-+.. .++. ++|-+. +.+..+...+.+++++.+ +++|+..+||.|
T Consensus 18 ~~p~E~cGlL~G~~~~~~~~~v~~-~~p~~n~~~~~~~~~f~~dp~~~~~~~~~~~~~g~~ivG~yH 83 (153)
T 2kcq_A 18 AYPEEGCGFLLGTVTDDGDNRVAA-LHRATNRRSEQRTRRYELTADDYRAADAAAQEQGLDVVGVYH 83 (153)
T ss_dssp HTTSCCCEEEEEEECTTSCEEEEE-EEESSCCCCCCCSCCSSCCCCSHHHHHHHHHHHTCEEEEEEE
T ss_pred cCCcceEEEEEEeeccCCCeEEEE-EEECCCCCCCCCCcEEEECHHHHHHHHHHHHHCCCeEEEEEe
Confidence 35789999999954 4554 466654 455556666666666665 467999999998
No 13
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.87 E-value=0.21 Score=38.06 Aligned_cols=54 Identities=15% Similarity=0.331 Sum_probs=41.7
Q ss_pred CCceEEeeeee------eEEEeEEeeeccccCCCCceecchh---HHHHhhhc--CCceEeeeeC
Q psy12650 37 YNLITLGWIHW------QLHITHLLIPKQAGTADSCITHHEE---EIFACQDK--YNLITLGWIH 90 (90)
Q Consensus 37 ~~l~tcGwIht------~~~it~l~iP~Q~~t~dsC~t~~Ee---~~f~~~~~--~~l~~lGWIH 90 (90)
...+.+|.|-| ++.|++..-..+.++.+.++..+++ ++.+...+ ++...+||.|
T Consensus 45 ~~~eV~GlLlG~~~~~~~v~Vt~~f~~P~~~~~~~v~~~d~~y~~~m~~~~~~v~~~~~vVGWYh 109 (306)
T 4b4t_V 45 VPMEVMGLMLGEFVDDYTVNVVDVFAMPQSGTGVSVEAVDDVFQAKMMDMLKQTGRDQMVVGWYH 109 (306)
T ss_dssp SSSCCEEEEEEEEETTTEEEEEEEECCCCEESSSCEECCCHHHHHHHHHHHHHHSCCCCCSEEEE
T ss_pred CCceEEEEEeeEEcCCeEEEEEEEEeCCcCCCCCchhcCCHHHHHHHHHHHHHhCCCcceeeEEe
Confidence 35688999888 5778888877799999999988775 44444333 6788999987
No 14
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense}
Probab=89.81 E-value=0.65 Score=31.08 Aligned_cols=43 Identities=12% Similarity=0.166 Sum_probs=28.5
Q ss_pred cEEEEEEEe-eCcccCCCcccccchhhhhhhh---hhCCceEEeeeee
Q psy12650 4 ELHITHLLI-PKQAGTADSCITHHEEEIFACQ---DKYNLITLGWIHW 47 (90)
Q Consensus 4 ~~~it~liI-PkQ~~t~dsC~t~~Ee~~f~~~---~~~~l~tcGwIht 47 (90)
.+.|+.++. |....+++.+ ..+.+++++.+ .++|+..+||.|+
T Consensus 36 ~~~v~~~~p~~n~~~~~~~f-~~dp~~~~~~~~~~~~~g~~ivG~~HS 82 (146)
T 2kks_A 36 DRWVERVYPLNNLDQSPEHF-SMDPREQLTAVKDMRKNGWVMLGNFHS 82 (146)
T ss_dssp EEEEEEEECCCCCSCCSSSC-CCCHHHHHHHHHHHHHHTCEEEEEEEE
T ss_pred CcEEEEEEECCCcCCCCceE-EECHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 466766554 3345555554 45566666664 6789999999999
No 15
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855}
Probab=87.73 E-value=0.82 Score=30.79 Aligned_cols=44 Identities=11% Similarity=0.086 Sum_probs=30.0
Q ss_pred ccEEEEEEEeeCcc---cCCCcccccchhhhhhhh---hhCCceEEeeeee
Q psy12650 3 SELHITHLLIPKQA---GTADSCITHHEEEIFACQ---DKYNLITLGWIHW 47 (90)
Q Consensus 3 ~~~~it~liIPkQ~---~t~dsC~t~~Ee~~f~~~---~~~~l~tcGwIht 47 (90)
+.+.|+. ++|-+. .++..+...+.+++++.+ +++|+..+||.|+
T Consensus 35 ~~~~v~~-~~p~~n~~~~~~~~~f~~dp~~~~~~~~~~~~~g~~ivG~yHS 84 (153)
T 2kcq_A 35 GDNRVAA-LHRATNRRSEQRTRRYELTADDYRAADAAAQEQGLDVVGVYHS 84 (153)
T ss_dssp SCEEEEE-EEESSCCCCCCCSCCSSCCCCSHHHHHHHHHHHTCEEEEEEEE
T ss_pred CCeEEEE-EEECCCCCCCCCCcEEEECHHHHHHHHHHHHHCCCeEEEEEeC
Confidence 4566765 467665 355556666666666654 5689999999998
No 16
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.66 E-value=0.21 Score=38.01 Aligned_cols=44 Identities=16% Similarity=0.354 Sum_probs=34.4
Q ss_pred cEEEEEEEeeCcccCCCcccccchh---hhhhhhhh--CCceEEeeeee
Q psy12650 4 ELHITHLLIPKQAGTADSCITHHEE---EIFACQDK--YNLITLGWIHW 47 (90)
Q Consensus 4 ~~~it~liIPkQ~~t~dsC~t~~Ee---~~f~~~~~--~~l~tcGwIht 47 (90)
++.|+..+-..+.++.+.+...+++ ++++...+ ++...+||-|+
T Consensus 62 ~v~Vt~~f~~P~~~~~~~v~~~d~~y~~~m~~~~~~v~~~~~vVGWYhS 110 (306)
T 4b4t_V 62 TVNVVDVFAMPQSGTGVSVEAVDDVFQAKMMDMLKQTGRDQMVVGWYHS 110 (306)
T ss_dssp EEEEEEEECCCCEESSSCEECCCHHHHHHHHHHHHHHSCCCCCSEEEEE
T ss_pred EEEEEEEEeCCcCCCCCchhcCCHHHHHHHHHHHHHhCCCcceeeEEec
Confidence 5889998877799999999988776 34444333 66789999998
No 17
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A
Probab=72.05 E-value=3.2 Score=26.84 Aligned_cols=48 Identities=8% Similarity=0.074 Sum_probs=26.4
Q ss_pred hhCCceEEeeeeeeE-EEeEEe-eeccccCCCCceecchhHHH-HhhhcCCceEeeeeC
Q psy12650 35 DKYNLITLGWIHWQL-HITHLL-IPKQAGTADSCITHHEEEIF-ACQDKYNLITLGWIH 90 (90)
Q Consensus 35 ~~~~l~tcGwIht~~-~it~l~-iP~Q~~t~dsC~t~~Ee~~f-~~~~~~~l~~lGWIH 90 (90)
...-.|.||+|-+.. .++.++ +| ..+++ ....| -..+.+|+-.+||.|
T Consensus 20 ~~~P~E~cGlL~g~~~~v~~~~~~p-~~~~~-------~~~~f~~~~~~~~~~ivG~~H 70 (124)
T 1oi0_A 20 SAHPDEFIALLSGSKDVMDELIFLP-FVSGS-------VSAVIHLDMLPIGMKVFGTVH 70 (124)
T ss_dssp HHTTSCCEEEEEESTTEECEEEECC-CCC--------------------CCCEEEEEEE
T ss_pred hcCCCeeEEEEecccCEEEEEEECC-CCCCC-------cCceeeeeeccCCCEEEEEEE
Confidence 345679999999943 455555 66 33332 11222 135668999999998
Done!