Query psy12650
Match_columns 90
No_of_seqs 101 out of 240
Neff 4.2
Searched_HMMs 13730
Date Fri Aug 16 16:03:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12650.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12650hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1oi0a_ c.97.3.1 (A:) Hypothet 53.2 8.2 0.0006 23.7 3.9 55 29-90 13-70 (121)
2 d1js3a_ c.67.1.6 (A:) DOPA dec 11.8 73 0.0053 23.0 2.9 31 56-90 239-269 (476)
3 d1js3a_ c.67.1.6 (A:) DOPA dec 10.0 1.1E+02 0.0082 21.9 3.4 34 10-47 237-270 (476)
4 d1l0wa1 b.40.4.1 (A:1-104) Asp 9.8 99 0.0072 18.0 2.6 24 19-47 4-27 (104)
5 d1c0aa1 b.40.4.1 (A:1-106) Asp 9.4 1.1E+02 0.0078 17.8 2.6 24 19-47 3-26 (106)
6 d1j20a1 c.26.2.1 (A:1-165) Arg 8.4 73 0.0053 17.4 1.4 14 70-83 149-162 (165)
7 d1mwpa_ d.170.2.1 (A:) N-termi 8.1 1.1E+02 0.0079 18.4 2.2 23 56-80 26-48 (96)
8 d2pv2a1 d.26.1.1 (A:172-274) P 7.9 1.1E+02 0.0077 17.1 2.1 15 4-18 2-16 (103)
9 d1b8aa1 b.40.4.1 (A:1-103) Asp 7.3 2.2E+02 0.016 16.1 3.8 24 19-47 4-27 (103)
10 d2dw4a1 a.4.1.18 (A:172-273) L 7.1 59 0.0043 19.3 0.6 15 73-87 80-94 (102)
No 1
>d1oi0a_ c.97.3.1 (A:) Hypothetical protein AF2198 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=53.19 E-value=8.2 Score=23.69 Aligned_cols=55 Identities=7% Similarity=0.021 Sum_probs=27.1
Q ss_pred hhhhhh-hhCCceEEeeeee-eEEEeEEeeeccccCCCCceecchhHHHH-hhhcCCceEeeeeC
Q psy12650 29 EIFACQ-DKYNLITLGWIHW-QLHITHLLIPKQAGTADSCITHHEEEIFA-CQDKYNLITLGWIH 90 (90)
Q Consensus 29 ~~f~~~-~~~~l~tcGwIht-~~~it~l~iP~Q~~t~dsC~t~~Ee~~f~-~~~~~~l~~lGWIH 90 (90)
++++.+ ...--|.||+|-+ .-.++.++.......+. ...|. .++++|+..+||.|
T Consensus 13 ~i~~hA~~~~P~E~cGlL~G~~~~i~~~~~~~n~~~~~-------~~~~~~~~~~~~~~ivgi~H 70 (121)
T d1oi0a_ 13 TILEAAKSAHPDEFIALLSGSKDVMDELIFLPFVSGSV-------SAVIHLDMLPIGMKVFGTVH 70 (121)
T ss_dssp HHHHHHHHHTTSCCEEEEEESTTEECEEEECCCCC--------------------CCCEEEEEEE
T ss_pred HHHHHHHhcCCceeEEEEEecCCcEEEEEEcCCCCCCc-------ccccccchhhcCCeEEEEEE
Confidence 344443 3356799999988 33444444433222211 22222 35678999999998
No 2
>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}
Probab=11.77 E-value=73 Score=22.95 Aligned_cols=31 Identities=19% Similarity=0.417 Sum_probs=26.3
Q ss_pred eeccccCCCCceecchhHHHHhhhcCCceEeeeeC
Q psy12650 56 IPKQAGTADSCITHHEEEIFACQDKYNLITLGWIH 90 (90)
Q Consensus 56 iP~Q~~t~dsC~t~~Ee~~f~~~~~~~l~~lGWIH 90 (90)
|--..||.+++.-.+=++|-+++.++|+ |+|
T Consensus 239 VvataGtt~~G~iDpl~~I~~i~~~~~~----wlH 269 (476)
T d1js3a_ 239 VVATLGTTSCCSFDNLLEVGPICHEEDI----WLH 269 (476)
T ss_dssp EEEEBSCTTTCCBCCHHHHHHHHHHTTC----EEE
T ss_pred EeecCCCccceeeccHHHHHHHHHhcCc----EEE
Confidence 3445689999999999999999999997 776
No 3
>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}
Probab=10.01 E-value=1.1e+02 Score=21.89 Aligned_cols=34 Identities=18% Similarity=0.394 Sum_probs=30.0
Q ss_pred EEeeCcccCCCcccccchhhhhhhhhhCCceEEeeeee
Q psy12650 10 LLIPKQAGTADSCITHHEEEIFACQDKYNLITLGWIHW 47 (90)
Q Consensus 10 liIPkQ~~t~dsC~t~~Ee~~f~~~~~~~l~tcGwIht 47 (90)
+.|--.-||++++.-.+=++|-+++.++|+ |+|-
T Consensus 237 ~~VvataGtt~~G~iDpl~~I~~i~~~~~~----wlHV 270 (476)
T d1js3a_ 237 FFVVATLGTTSCCSFDNLLEVGPICHEEDI----WLHV 270 (476)
T ss_dssp EEEEEEBSCTTTCCBCCHHHHHHHHHHTTC----EEEE
T ss_pred EEEeecCCCccceeeccHHHHHHHHHhcCc----EEEE
Confidence 456667799999999999999999999997 9997
No 4
>d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]}
Probab=9.81 E-value=99 Score=17.99 Aligned_cols=24 Identities=13% Similarity=0.248 Sum_probs=16.0
Q ss_pred CCcccccchhhhhhhhhhCCceEEeeeee
Q psy12650 19 ADSCITHHEEEIFACQDKYNLITLGWIHW 47 (90)
Q Consensus 19 ~dsC~t~~Ee~~f~~~~~~~l~tcGwIht 47 (90)
+.+|.-.+++. .-+.+..+||+|+
T Consensus 4 Th~~geL~~~~-----~g~~V~l~GWV~~ 27 (104)
T d1l0wa1 4 THYAGSLRETH-----VGEEVVLEGWVNR 27 (104)
T ss_dssp SSCGGGCCGGG-----TTCEEEEEEEEEE
T ss_pred ccccccCChHH-----CCCEEEEEEEEEe
Confidence 44665544432 3567889999999
No 5
>d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]}
Probab=9.36 E-value=1.1e+02 Score=17.75 Aligned_cols=24 Identities=13% Similarity=0.315 Sum_probs=16.1
Q ss_pred CCcccccchhhhhhhhhhCCceEEeeeee
Q psy12650 19 ADSCITHHEEEIFACQDKYNLITLGWIHW 47 (90)
Q Consensus 19 ~dsC~t~~Ee~~f~~~~~~~l~tcGwIht 47 (90)
+.+|.-.++. ...+.+..+||+|+
T Consensus 3 th~cgeL~~~-----~~g~~V~v~GWv~~ 26 (106)
T d1c0aa1 3 TEYCGQLRLS-----HVGQQVTLCGWVNR 26 (106)
T ss_dssp SSCGGGCCGG-----GTTCEEEEEEEEEE
T ss_pred ceEcccCChH-----HCCCEEEEEEEEEE
Confidence 3466655443 23577889999999
No 6
>d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=8.38 E-value=73 Score=17.39 Aligned_cols=14 Identities=14% Similarity=0.294 Sum_probs=10.4
Q ss_pred chhHHHHhhhcCCc
Q psy12650 70 HEEEIFACQDKYNL 83 (90)
Q Consensus 70 ~Ee~~f~~~~~~~l 83 (90)
+++|+.+|+.++|+
T Consensus 149 ~k~ei~~ya~~~~i 162 (165)
T d1j20a1 149 GRKEMIAYAEAHGI 162 (165)
T ss_dssp SHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHhCC
Confidence 56777788877776
No 7
>d1mwpa_ d.170.2.1 (A:) N-terminal domain of the amyloid precursor protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.06 E-value=1.1e+02 Score=18.41 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=15.3
Q ss_pred eeccccCCCCceecchhHHHHhhhc
Q psy12650 56 IPKQAGTADSCITHHEEEIFACQDK 80 (90)
Q Consensus 56 iP~Q~~t~dsC~t~~Ee~~f~~~~~ 80 (90)
+|+-+| .-+|. .+.++|++|+.+
T Consensus 26 ~~D~s~-~~~C~-~~k~~IL~YCqk 48 (96)
T d1mwpa_ 26 DSDPSG-TKTCI-DTKEGILQYCQE 48 (96)
T ss_dssp EECTTS-CCBCC-CSHHHHHHHHHH
T ss_pred eeCCCC-Ccccc-CChHHHHHHHHH
Confidence 454333 34888 456679999987
No 8
>d2pv2a1 d.26.1.1 (A:172-274) Porin chaperone SurA, PPIase domains {Escherichia coli [TaxId: 562]}
Probab=7.94 E-value=1.1e+02 Score=17.11 Aligned_cols=15 Identities=40% Similarity=0.793 Sum_probs=11.4
Q ss_pred cEEEEEEEeeCcccC
Q psy12650 4 ELHITHLLIPKQAGT 18 (90)
Q Consensus 4 ~~~it~liIPkQ~~t 18 (90)
.|.+.|++||-....
T Consensus 2 e~~~~hIli~~~~~~ 16 (103)
T d2pv2a1 2 ELNLSHILIPLPENP 16 (103)
T ss_dssp EEEEEEEEEECCSSC
T ss_pred ceEEEEEEEeCCCCC
Confidence 478999999965544
No 9
>d1b8aa1 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Probab=7.26 E-value=2.2e+02 Score=16.07 Aligned_cols=24 Identities=17% Similarity=0.251 Sum_probs=16.2
Q ss_pred CCcccccchhhhhhhhhhCCceEEeeeee
Q psy12650 19 ADSCITHHEEEIFACQDKYNLITLGWIHW 47 (90)
Q Consensus 19 ~dsC~t~~Ee~~f~~~~~~~l~tcGwIht 47 (90)
+.+|.-.+++ ..-+.+..+||+|.
T Consensus 4 Th~~~el~~~-----~~G~~V~v~Gwv~~ 27 (103)
T d1b8aa1 4 THYSSEITEE-----LNGQKVKVAGWVWE 27 (103)
T ss_dssp SCCGGGCCGG-----GTTCEEEEEEEEEE
T ss_pred ccChhhCChh-----HCCCEEEEEEEEeh
Confidence 3456555543 23567889999999
No 10
>d2dw4a1 a.4.1.18 (A:172-273) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.13 E-value=59 Score=19.28 Aligned_cols=15 Identities=20% Similarity=0.514 Sum_probs=13.3
Q ss_pred HHHHhhhcCCceEee
Q psy12650 73 EIFACQDKYNLITLG 87 (90)
Q Consensus 73 ~~f~~~~~~~l~~lG 87 (90)
.+++|.+++|+|+.|
T Consensus 80 ri~~FL~~~G~INfG 94 (102)
T d2dw4a1 80 RVHSYLERHGLINFG 94 (102)
T ss_dssp HHHHHHHHTTSSSCS
T ss_pred HHHHHHHHcCceeeC
Confidence 579999999999877
Done!