RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12650
         (90 letters)



>d1y60a_ d.14.1.12 (A:) Formaldehyde-activating enzyme, FAE
           {Methylobacterium extorquens [TaxId: 408]}
          Length = 168

 Score = 25.8 bits (57), Expect = 0.69
 Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 2/50 (4%)

Query: 1   VQSELHITHLLIPKQAGTADSCITHHEEEIFACQ--DKYNLITLGWIHWQ 48
           +        +  P Q G A +      E I      D   ++   +IHW+
Sbjct: 73  INDARQAVQMFGPAQHGVAMAVQDAVAEGIIPADEADDLYVLVGVFIHWE 122


>d2afwa1 c.56.5.8 (A:33-361) Glutaminyl-peptide cyclotransferase,
          QPCT {Human (Homo sapiens) [TaxId: 9606]}
          Length = 329

 Score = 22.9 bits (48), Expect = 9.1
 Identities = 6/18 (33%), Positives = 9/18 (50%)

Query: 46 HWQLHITHLLIPKQAGTA 63
           WQ  +  LLI +  G+ 
Sbjct: 33 MWQNDLQPLLIERYPGSP 50


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.137    0.460 

Gapped
Lambda     K      H
   0.267   0.0481    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 358,668
Number of extensions: 14038
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 5
Length of query: 90
Length of database: 2,407,596
Length adjustment: 54
Effective length of query: 36
Effective length of database: 1,666,176
Effective search space: 59982336
Effective search space used: 59982336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.5 bits)