Query psy12654
Match_columns 133
No_of_seqs 119 out of 831
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 16:08:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12654.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12654hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00113 Enolase_C: Enolase, C 100.0 4E-60 8.6E-65 393.7 10.9 130 3-132 166-295 (295)
2 KOG2670|consensus 100.0 1.9E-59 4.2E-64 396.3 11.5 121 12-132 313-433 (433)
3 COG0148 Eno Enolase [Carbohydr 100.0 5.8E-55 1.3E-59 374.1 11.4 125 4-128 294-418 (423)
4 PRK08350 hypothetical protein; 100.0 2.6E-51 5.5E-56 346.2 10.3 111 3-123 225-335 (341)
5 PTZ00378 hypothetical protein; 100.0 4.1E-48 9E-53 340.5 11.9 122 3-126 361-486 (518)
6 PTZ00081 enolase; Provisional 100.0 1.5E-44 3.2E-49 313.3 12.0 126 3-128 314-439 (439)
7 PLN00191 enolase 100.0 4.5E-40 9.8E-45 286.6 11.7 126 5-132 330-455 (457)
8 PRK00077 eno enolase; Provisio 100.0 4.3E-39 9.3E-44 276.9 12.2 129 3-131 294-423 (425)
9 TIGR01060 eno phosphopyruvate 100.0 1.9E-38 4.2E-43 272.8 12.1 128 4-131 296-424 (425)
10 cd03313 enolase Enolase: Enola 100.0 1.8E-37 3.9E-42 265.7 9.8 115 3-117 294-408 (408)
11 TIGR01502 B_methylAsp_ase meth 98.7 1.1E-07 2.3E-12 82.8 11.3 107 10-118 294-405 (408)
12 cd03314 MAL Methylaspartate am 98.5 3.4E-07 7.4E-12 78.6 8.2 85 11-96 259-345 (369)
13 cd00308 enolase_like Enolase-s 97.6 0.00017 3.6E-09 56.8 6.6 83 5-90 139-222 (229)
14 cd03317 NAAAR N-acylamino acid 97.4 0.00053 1.2E-08 57.2 7.1 80 5-88 222-301 (354)
15 PF07476 MAAL_C: Methylasparta 97.4 0.00083 1.8E-08 55.5 7.5 110 5-116 130-244 (248)
16 cd03318 MLE Muconate Lactonizi 97.0 0.0027 5.8E-08 53.3 6.9 81 5-89 233-315 (365)
17 cd03319 L-Ala-DL-Glu_epimerase 96.9 0.0028 6E-08 52.2 6.6 76 12-89 227-304 (316)
18 TIGR01928 menC_lowGC/arch o-su 96.9 0.0048 1E-07 51.4 7.6 70 5-78 217-286 (324)
19 cd03316 MR_like Mandelate race 96.8 0.0027 5.9E-08 52.8 5.9 77 12-90 239-316 (357)
20 PF13378 MR_MLE_C: Enolase C-t 96.7 0.0029 6.2E-08 44.4 4.5 66 23-90 4-71 (111)
21 cd03321 mandelate_racemase Man 96.6 0.0054 1.2E-07 51.6 6.3 78 4-89 230-307 (355)
22 cd03315 MLE_like Muconate lact 96.6 0.0088 1.9E-07 48.0 6.9 81 5-89 174-256 (265)
23 cd03329 MR_like_4 Mandelate ra 96.5 0.009 2E-07 50.5 6.9 74 12-90 239-312 (368)
24 cd03322 rpsA The starvation se 96.4 0.012 2.5E-07 49.8 7.1 70 5-77 208-277 (361)
25 cd03327 MR_like_2 Mandelate ra 96.3 0.008 1.7E-07 50.4 5.4 77 5-89 216-292 (341)
26 TIGR01927 menC_gamma/gm+ o-suc 96.1 0.024 5.2E-07 47.2 7.1 82 5-90 200-283 (307)
27 cd03325 D-galactonate_dehydrat 96.0 0.02 4.3E-07 48.2 6.2 80 5-89 221-302 (352)
28 TIGR02534 mucon_cyclo muconate 95.9 0.028 6.2E-07 47.4 7.1 64 5-71 232-295 (368)
29 PRK14017 galactonate dehydrata 95.8 0.026 5.6E-07 48.0 6.1 66 5-73 222-287 (382)
30 cd03320 OSBS o-Succinylbenzoat 95.4 0.042 9E-07 44.3 5.9 76 12-89 175-252 (263)
31 PRK15072 bifunctional D-altron 95.3 0.068 1.5E-06 46.0 7.3 69 6-77 252-320 (404)
32 cd03323 D-glucarate_dehydratas 95.2 0.078 1.7E-06 45.7 7.2 81 5-89 255-337 (395)
33 TIGR03247 glucar-dehydr glucar 94.7 0.12 2.6E-06 45.5 7.1 80 5-89 273-354 (441)
34 PRK02901 O-succinylbenzoate sy 94.6 0.13 2.9E-06 43.6 6.8 78 5-89 178-257 (327)
35 PRK15129 L-Ala-D/L-Glu epimera 94.3 0.1 2.3E-06 43.4 5.6 59 12-73 218-276 (321)
36 cd03328 MR_like_3 Mandelate ra 94.0 0.12 2.7E-06 43.5 5.6 79 5-89 227-305 (352)
37 PRK05105 O-succinylbenzoate sy 92.4 0.37 8.1E-06 40.3 5.9 73 13-89 209-283 (322)
38 PRK15440 L-rhamnonate dehydrat 91.4 0.6 1.3E-05 40.5 6.2 67 5-73 253-319 (394)
39 PRK02714 O-succinylbenzoate sy 91.2 0.64 1.4E-05 38.8 6.1 79 5-90 211-291 (320)
40 cd03326 MR_like_1 Mandelate ra 91.1 0.59 1.3E-05 40.3 5.9 66 5-73 250-321 (385)
41 cd03324 rTSbeta_L-fuconate_deh 89.3 1 2.3E-05 39.3 6.0 57 13-70 294-350 (415)
42 COG4948 L-alanine-DL-glutamate 88.3 1.1 2.4E-05 37.8 5.3 59 14-75 240-298 (372)
43 PLN02980 2-oxoglutarate decarb 86.7 1.7 3.7E-05 44.1 6.4 81 5-89 1179-1265(1655)
44 COG3799 Mal Methylaspartate am 86.0 1.7 3.7E-05 37.9 5.3 87 8-95 293-381 (410)
45 cd05710 SIS_1 A subgroup of th 79.8 2.4 5.1E-05 30.2 3.2 55 38-92 47-101 (120)
46 COG1441 MenC O-succinylbenzoat 77.0 2.9 6.2E-05 35.5 3.4 39 35-73 227-265 (321)
47 PRK11382 frlB fructoselysine-6 75.9 2.7 5.9E-05 35.3 3.0 54 38-91 92-145 (340)
48 cd05008 SIS_GlmS_GlmD_1 SIS (S 72.9 4.3 9.4E-05 28.2 3.0 54 38-91 46-99 (126)
49 PRK12928 lipoyl synthase; Prov 72.2 19 0.00042 30.0 7.2 80 45-126 181-278 (290)
50 PRK05481 lipoyl synthase; Prov 72.0 17 0.00036 30.2 6.7 84 45-130 173-274 (289)
51 COG1921 SelA Selenocysteine sy 71.4 13 0.00028 33.0 6.1 69 5-77 126-199 (395)
52 TIGR02815 agaS_fam putative su 68.4 5.3 0.00011 34.2 3.1 35 38-72 92-128 (372)
53 cd05005 SIS_PHI Hexulose-6-pho 67.9 11 0.00025 28.2 4.5 67 10-87 58-124 (179)
54 TIGR01675 plant-AP plant acid 67.8 18 0.0004 29.5 6.0 73 18-90 84-163 (229)
55 COG1012 PutA NAD-dependent ald 66.4 2.5 5.5E-05 37.5 0.8 85 34-122 157-247 (472)
56 cd05017 SIS_PGI_PMI_1 The memb 65.1 13 0.00028 26.2 4.1 61 38-103 43-105 (119)
57 TIGR01361 DAHP_synth_Bsub phos 65.1 20 0.00043 29.5 5.7 50 22-73 118-168 (260)
58 PRK13398 3-deoxy-7-phosphohept 63.6 33 0.00071 28.4 6.8 64 22-87 120-187 (266)
59 cd05013 SIS_RpiR RpiR-like pro 62.5 30 0.00065 23.6 5.5 50 37-86 59-108 (139)
60 PRK08673 3-deoxy-7-phosphohept 61.3 30 0.00066 29.8 6.4 63 23-87 187-253 (335)
61 PF01380 SIS: SIS domain SIS d 60.6 13 0.00029 25.5 3.5 54 37-90 52-105 (131)
62 cd05014 SIS_Kpsf KpsF-like pro 60.3 12 0.00026 26.0 3.2 54 38-91 47-100 (128)
63 PRK11557 putative DNA-binding 60.1 31 0.00067 27.6 5.9 50 38-87 175-224 (278)
64 PRK05660 HemN family oxidoredu 58.7 17 0.00036 31.1 4.3 55 41-95 132-192 (378)
65 PRK00331 glucosamine--fructose 57.0 12 0.00025 33.8 3.3 57 37-93 335-391 (604)
66 TIGR00441 gmhA phosphoheptose 55.2 15 0.00033 27.3 3.2 51 38-88 79-129 (154)
67 PRK05628 coproporphyrinogen II 54.9 95 0.0021 26.2 8.3 52 44-95 136-193 (375)
68 TIGR00510 lipA lipoate synthas 54.7 18 0.0004 30.5 3.9 56 44-101 183-246 (302)
69 PRK10892 D-arabinose 5-phospha 54.5 13 0.00028 30.6 2.9 56 38-93 94-149 (326)
70 PF10087 DUF2325: Uncharacteri 54.4 59 0.0013 22.2 5.9 39 38-77 49-87 (97)
71 PRK06852 aldolase; Validated 54.4 70 0.0015 27.3 7.4 71 29-99 121-210 (304)
72 PTZ00394 glucosamine-fructose- 54.3 13 0.00027 34.6 3.1 53 37-89 400-452 (670)
73 TIGR00539 hemN_rel putative ox 52.9 25 0.00055 29.6 4.5 51 46-96 130-186 (360)
74 cd04795 SIS SIS domain. SIS (S 52.7 20 0.00044 22.9 3.1 34 37-70 46-79 (87)
75 PF02310 B12-binding: B12 bind 52.7 72 0.0016 21.8 6.2 62 10-74 27-90 (121)
76 PF00465 Fe-ADH: Iron-containi 52.5 27 0.00058 29.3 4.6 69 10-79 21-92 (366)
77 TIGR01135 glmS glucosamine--fr 52.2 40 0.00087 30.4 5.9 57 37-93 337-393 (607)
78 COG1737 RpiR Transcriptional r 51.2 65 0.0014 26.3 6.5 75 9-89 154-228 (281)
79 KOG2599|consensus 51.1 26 0.00056 30.1 4.2 56 16-73 120-188 (308)
80 cd04726 KGPDC_HPS 3-Keto-L-gul 51.1 1E+02 0.0022 23.1 7.5 80 13-97 53-133 (202)
81 PLN03194 putative disease resi 50.7 14 0.0003 29.7 2.4 43 63-105 24-70 (187)
82 TIGR00730 conserved hypothetic 50.1 24 0.00052 27.4 3.7 65 29-94 88-154 (178)
83 PTZ00295 glucosamine-fructose- 49.5 17 0.00038 33.2 3.2 50 38-87 369-418 (640)
84 TIGR01680 Veg_Stor_Prot vegeta 49.4 26 0.00056 29.7 4.0 73 18-90 108-188 (275)
85 TIGR02886 spore_II_AA anti-sig 49.1 47 0.001 22.4 4.7 66 14-80 12-86 (106)
86 PRK14331 (dimethylallyl)adenos 48.8 86 0.0019 27.3 7.2 75 44-118 272-368 (437)
87 PF00128 Alpha-amylase: Alpha 48.7 23 0.0005 27.3 3.4 32 47-78 47-82 (316)
88 TIGR03127 RuMP_HxlB 6-phospho 48.6 22 0.00049 26.5 3.2 51 39-89 73-123 (179)
89 PRK07379 coproporphyrinogen II 48.3 32 0.0007 29.6 4.5 54 42-95 141-200 (400)
90 cd00615 Orn_deC_like Ornithine 47.7 31 0.00067 27.8 4.1 50 25-74 141-192 (294)
91 PLN02428 lipoic acid synthase 47.5 86 0.0019 27.2 7.0 76 49-126 228-321 (349)
92 cd00956 Transaldolase_FSA Tran 47.3 1.3E+02 0.0027 23.9 7.4 72 12-94 54-126 (211)
93 PRK13937 phosphoheptose isomer 46.9 24 0.00052 27.1 3.2 50 38-87 106-155 (188)
94 PF01041 DegT_DnrJ_EryC1: DegT 46.9 39 0.00085 28.1 4.7 49 20-70 97-145 (363)
95 cd08183 Fe-ADH2 Iron-containin 46.5 55 0.0012 27.8 5.6 69 11-80 22-90 (374)
96 PRK13397 3-deoxy-7-phosphohept 46.2 55 0.0012 27.2 5.4 62 22-85 108-173 (250)
97 PRK06294 coproporphyrinogen II 45.9 35 0.00076 29.0 4.3 53 44-96 131-189 (370)
98 PLN02981 glucosamine:fructose- 45.8 20 0.00043 33.3 3.0 49 40-88 412-460 (680)
99 TIGR01212 radical SAM protein, 45.6 40 0.00087 27.9 4.5 55 44-98 155-214 (302)
100 PRK13938 phosphoheptose isomer 44.4 26 0.00057 27.6 3.1 51 38-88 113-163 (196)
101 COG2222 AgaS Predicted phospho 44.4 22 0.00048 30.6 2.9 55 36-90 85-139 (340)
102 PRK13347 coproporphyrinogen II 42.9 1.4E+02 0.0031 26.1 7.7 52 44-95 180-237 (453)
103 PRK02947 hypothetical protein; 42.8 42 0.0009 27.1 4.1 38 39-76 107-144 (246)
104 PF03641 Lysine_decarbox: Poss 42.7 26 0.00056 25.6 2.7 37 26-64 44-80 (133)
105 PRK10624 L-1,2-propanediol oxi 42.7 81 0.0017 26.9 6.0 70 12-81 31-103 (382)
106 cd05006 SIS_GmhA Phosphoheptos 42.5 31 0.00067 25.8 3.2 50 38-87 101-150 (177)
107 PRK05692 hydroxymethylglutaryl 42.4 64 0.0014 26.8 5.3 90 23-112 79-193 (287)
108 PRK15482 transcriptional regul 42.2 86 0.0019 25.2 5.9 56 38-93 182-237 (285)
109 PRK15454 ethanol dehydrogenase 41.9 78 0.0017 27.3 5.9 70 12-81 50-122 (395)
110 COG1830 FbaB DhnA-type fructos 41.3 89 0.0019 26.4 5.9 56 51-106 129-198 (265)
111 cd03109 DTBS Dethiobiotin synt 40.7 1.4E+02 0.003 21.5 6.5 42 37-78 68-111 (134)
112 PRK08599 coproporphyrinogen II 40.7 59 0.0013 27.5 4.9 51 46-96 130-186 (377)
113 TIGR02660 nifV_homocitr homoci 40.6 74 0.0016 27.1 5.5 73 23-95 72-160 (365)
114 cd04254 AAK_UMPK-PyrH-Ec UMP k 40.3 76 0.0017 25.0 5.2 69 28-96 81-154 (231)
115 PRK11337 DNA-binding transcrip 40.1 84 0.0018 25.3 5.5 51 38-88 187-237 (292)
116 PRK00414 gmhA phosphoheptose i 39.6 35 0.00076 26.5 3.1 54 38-91 111-164 (192)
117 PRK09250 fructose-bisphosphate 39.6 96 0.0021 27.1 6.1 78 29-107 152-247 (348)
118 PRK05904 coproporphyrinogen II 39.3 56 0.0012 27.8 4.6 51 44-94 131-187 (353)
119 cd08185 Fe-ADH1 Iron-containin 39.3 1.1E+02 0.0024 25.9 6.4 71 10-80 24-98 (380)
120 cd08190 HOT Hydroxyacid-oxoaci 39.0 1.1E+02 0.0023 26.6 6.3 69 12-80 24-95 (414)
121 cd07948 DRE_TIM_HCS Saccharomy 38.9 79 0.0017 25.9 5.2 90 22-112 70-179 (262)
122 PRK11858 aksA trans-homoaconit 38.8 85 0.0018 27.0 5.6 72 24-95 76-163 (378)
123 cd05015 SIS_PGI_1 Phosphogluco 38.6 81 0.0018 23.5 4.9 38 26-63 60-98 (158)
124 PRK08508 biotin synthase; Prov 38.1 52 0.0011 26.9 4.0 36 48-85 133-172 (279)
125 PRK08208 coproporphyrinogen II 37.9 54 0.0012 28.5 4.3 52 46-97 171-228 (430)
126 TIGR03471 HpnJ hopanoid biosyn 37.6 80 0.0017 27.5 5.4 51 46-96 317-372 (472)
127 PRK08446 coproporphyrinogen II 37.6 69 0.0015 27.0 4.8 53 44-96 126-184 (350)
128 PRK06267 hypothetical protein; 37.5 55 0.0012 27.8 4.2 39 45-85 146-188 (350)
129 COG1551 CsrA RNA-binding globa 36.9 14 0.00031 25.5 0.5 19 5-24 3-21 (73)
130 PRK00358 pyrH uridylate kinase 36.8 87 0.0019 24.5 5.0 40 56-95 111-153 (231)
131 cd08189 Fe-ADH5 Iron-containin 36.6 1.2E+02 0.0027 25.6 6.2 69 12-80 27-98 (374)
132 TIGR00393 kpsF KpsF/GutQ famil 36.5 38 0.00083 26.6 2.9 54 38-91 47-100 (268)
133 PRK08207 coproporphyrinogen II 36.2 65 0.0014 28.9 4.6 69 26-95 269-354 (488)
134 PRK08227 autoinducer 2 aldolas 36.0 1.2E+02 0.0025 25.4 5.8 71 29-100 100-181 (264)
135 TIGR01303 IMP_DH_rel_1 IMP deh 35.7 1.1E+02 0.0023 27.6 5.9 88 15-108 214-305 (475)
136 cd01094 Alkanesulfonate_monoxy 35.2 73 0.0016 25.1 4.4 49 50-98 26-74 (244)
137 cd08194 Fe-ADH6 Iron-containin 35.2 1.2E+02 0.0025 25.8 5.8 70 11-80 23-95 (375)
138 PRK12595 bifunctional 3-deoxy- 35.1 98 0.0021 26.8 5.4 50 23-74 212-262 (360)
139 TIGR02026 BchE magnesium-proto 35.1 86 0.0019 27.8 5.2 67 45-111 316-387 (497)
140 cd03789 GT1_LPS_heptosyltransf 34.4 79 0.0017 25.0 4.5 49 50-109 188-236 (279)
141 PRK11543 gutQ D-arabinose 5-ph 34.2 45 0.00098 27.1 3.1 52 40-91 91-142 (321)
142 PRK14330 (dimethylallyl)adenos 33.9 1.9E+02 0.0042 25.0 7.1 73 44-118 267-364 (434)
143 cd08193 HVD 5-hydroxyvalerate 33.8 1.3E+02 0.0029 25.4 6.0 69 12-80 27-98 (376)
144 PRK05799 coproporphyrinogen II 33.7 74 0.0016 26.8 4.4 70 26-96 99-185 (374)
145 PRK09249 coproporphyrinogen II 33.6 89 0.0019 27.3 5.0 70 26-96 151-237 (453)
146 cd03466 Nitrogenase_NifN_2 Nit 33.2 2.5E+02 0.0055 24.3 7.7 105 12-119 156-273 (429)
147 cd00411 Asparaginase Asparagin 33.2 94 0.002 26.2 4.9 49 25-74 222-271 (323)
148 PRK11706 TDP-4-oxo-6-deoxy-D-g 32.7 71 0.0015 26.7 4.1 59 10-70 91-151 (375)
149 cd08192 Fe-ADH7 Iron-containin 32.6 1.7E+02 0.0037 24.6 6.4 69 12-80 25-96 (370)
150 PRK13125 trpA tryptophan synth 32.6 1.4E+02 0.0031 23.8 5.7 57 22-78 86-142 (244)
151 PRK09461 ansA cytoplasmic aspa 32.5 1E+02 0.0022 26.2 5.0 86 25-112 222-313 (335)
152 PRK14862 rimO ribosomal protei 32.1 1.5E+02 0.0034 25.8 6.3 75 44-118 273-369 (440)
153 PLN02389 biotin synthase 31.7 64 0.0014 28.0 3.8 35 49-85 210-248 (379)
154 PF00289 CPSase_L_chain: Carba 31.2 1.2E+02 0.0027 21.6 4.7 71 54-129 14-84 (110)
155 COG2145 ThiM Hydroxyethylthiaz 31.1 41 0.00088 28.5 2.4 32 36-70 54-90 (265)
156 cd08187 BDH Butanol dehydrogen 30.9 1.3E+02 0.0027 25.6 5.4 70 11-80 28-101 (382)
157 smart00642 Aamy Alpha-amylase 30.6 64 0.0014 24.5 3.2 29 47-75 65-97 (166)
158 TIGR02370 pyl_corrinoid methyl 30.5 2.3E+02 0.0049 22.0 6.4 64 8-74 109-176 (197)
159 cd00378 SHMT Serine-glycine hy 30.5 84 0.0018 26.0 4.2 51 22-72 146-196 (402)
160 PRK09860 putative alcohol dehy 30.3 1.8E+02 0.004 24.9 6.3 69 12-80 32-103 (383)
161 cd08180 PDD 1,3-propanediol de 30.2 1.9E+02 0.004 24.1 6.2 70 11-81 22-94 (332)
162 PF13407 Peripla_BP_4: Peripla 30.2 1.2E+02 0.0026 22.9 4.7 44 27-74 46-89 (257)
163 TIGR03531 selenium_SpcS O-phos 30.2 1.2E+02 0.0025 27.1 5.2 58 18-75 183-245 (444)
164 PRK13396 3-deoxy-7-phosphohept 30.1 1.2E+02 0.0027 26.3 5.2 49 23-73 195-244 (352)
165 cd08181 PPD-like 1,3-propanedi 30.1 1.7E+02 0.0037 24.6 6.0 71 10-80 24-98 (357)
166 PRK08674 bifunctional phosphog 30.0 86 0.0019 26.2 4.2 55 37-96 77-131 (337)
167 PRK09057 coproporphyrinogen II 29.6 94 0.002 26.5 4.4 57 40-96 128-189 (380)
168 TIGR03560 F420_Rv1855c probabl 29.5 1.6E+02 0.0034 23.2 5.4 55 42-98 5-70 (227)
169 TIGR00538 hemN oxygen-independ 29.5 1.1E+02 0.0024 26.7 4.9 70 26-96 151-237 (455)
170 cd04246 AAK_AK-DapG-like AAK_A 28.9 1.3E+02 0.0027 23.8 4.8 69 26-94 76-167 (239)
171 TIGR03700 mena_SCO4494 putativ 28.9 74 0.0016 26.9 3.6 34 50-85 186-223 (351)
172 TIGR03559 F420_Rv3520c probabl 28.8 1.4E+02 0.0029 24.9 5.1 47 50-98 11-58 (325)
173 cd01096 Alkanal_monooxygenase 28.7 1.3E+02 0.0028 24.7 4.9 50 49-98 19-73 (315)
174 TIGR01283 nifE nitrogenase mol 28.7 1.9E+02 0.004 25.3 6.2 98 11-119 197-294 (456)
175 TIGR00433 bioB biotin syntheta 28.3 1E+02 0.0022 24.7 4.2 36 48-85 154-193 (296)
176 PF14871 GHL6: Hypothetical gl 28.2 97 0.0021 22.9 3.8 50 26-75 2-67 (132)
177 PF07745 Glyco_hydro_53: Glyco 28.2 1E+02 0.0022 26.5 4.4 49 27-75 27-81 (332)
178 COG2006 Uncharacterized conser 28.2 2E+02 0.0044 24.7 6.0 60 37-96 36-111 (293)
179 TIGR02638 lactal_redase lactal 28.1 1.9E+02 0.004 24.6 5.9 70 12-81 30-102 (379)
180 PF01408 GFO_IDH_MocA: Oxidore 27.9 1.5E+02 0.0032 20.0 4.4 45 26-72 76-120 (120)
181 TIGR02090 LEU1_arch isopropylm 27.9 1.6E+02 0.0034 25.2 5.5 73 22-95 70-159 (363)
182 PF09806 CDK2AP: Cyclin-depend 27.8 38 0.00082 27.3 1.6 23 105-127 138-162 (193)
183 cd06259 YdcF-like YdcF-like. Y 27.7 1.9E+02 0.0042 20.5 5.3 57 11-67 35-96 (150)
184 cd08179 NADPH_BDH NADPH-depend 27.7 2E+02 0.0042 24.4 6.0 71 11-81 23-97 (375)
185 TIGR00612 ispG_gcpE 1-hydroxy- 27.4 2.5E+02 0.0054 24.7 6.6 70 11-83 70-139 (346)
186 cd08188 Fe-ADH4 Iron-containin 27.2 2.1E+02 0.0045 24.3 6.1 70 12-81 29-101 (377)
187 COG1611 Predicted Rossmann fol 27.0 83 0.0018 25.1 3.4 34 29-62 102-135 (205)
188 PF13684 Dak1_2: Dihydroxyacet 26.8 2.5E+02 0.0054 23.7 6.4 102 6-110 111-225 (313)
189 PF04122 CW_binding_2: Putativ 26.7 1.7E+02 0.0038 19.4 4.6 55 16-72 3-57 (92)
190 PRK06256 biotin synthase; Vali 26.7 1.1E+02 0.0023 25.3 4.2 38 46-85 181-222 (336)
191 TIGR03588 PseC UDP-4-keto-6-de 26.6 1.2E+02 0.0025 25.2 4.4 49 21-70 102-153 (380)
192 PRK07360 FO synthase subunit 2 26.6 93 0.002 26.6 3.9 39 44-85 194-236 (371)
193 PF01791 DeoC: DeoC/LacD famil 26.5 61 0.0013 25.5 2.6 52 48-99 108-168 (236)
194 TIGR01437 selA_rel uncharacter 26.5 1.5E+02 0.0032 24.8 5.0 64 10-75 123-189 (363)
195 cd04261 AAK_AKii-LysC-BS AAK_A 26.5 1.5E+02 0.0033 23.4 4.8 66 29-94 79-167 (239)
196 PRK06245 cofG FO synthase subu 26.3 93 0.002 25.8 3.7 34 50-85 151-188 (336)
197 cd05007 SIS_Etherase N-acetylm 26.2 76 0.0017 25.8 3.1 54 38-91 118-171 (257)
198 cd01968 Nitrogenase_NifE_I Nit 26.1 3E+02 0.0064 23.6 6.9 89 11-108 158-246 (410)
199 TIGR02201 heptsyl_trn_III lipo 25.7 2E+02 0.0044 23.4 5.6 44 50-104 250-293 (344)
200 TIGR00695 uxuA mannonate dehyd 25.6 1.6E+02 0.0035 26.1 5.2 69 37-119 23-96 (394)
201 PRK00011 glyA serine hydroxyme 25.6 1.2E+02 0.0026 25.4 4.3 51 22-72 150-200 (416)
202 PRK05967 cystathionine beta-ly 25.6 1.6E+02 0.0036 25.5 5.2 82 7-93 124-211 (395)
203 PRK15364 pathogenicity island 25.5 39 0.00084 27.4 1.2 35 56-95 102-138 (196)
204 PLN02746 hydroxymethylglutaryl 25.4 1.7E+02 0.0038 25.2 5.3 91 23-113 121-236 (347)
205 PRK13957 indole-3-glycerol-pho 25.4 1.5E+02 0.0033 24.5 4.8 60 14-76 103-162 (247)
206 TIGR03841 F420_Rv3093c probabl 25.4 1.3E+02 0.0028 24.7 4.3 47 50-98 8-55 (301)
207 TIGR03554 F420_G6P_DH glucose- 25.3 1.7E+02 0.0037 24.4 5.1 55 43-98 8-70 (331)
208 TIGR02801 tolR TolR protein. T 25.3 1.8E+02 0.0039 20.7 4.7 42 27-68 82-123 (129)
209 cd02067 B12-binding B12 bindin 25.2 2.3E+02 0.0051 19.5 6.5 63 8-73 24-89 (119)
210 cd02070 corrinoid_protein_B12- 25.2 3.2E+02 0.0069 21.0 6.5 62 9-73 108-173 (201)
211 TIGR01282 nifD nitrogenase mol 25.2 2.1E+02 0.0045 25.4 5.9 88 11-108 207-295 (466)
212 PRK11096 ansB L-asparaginase I 24.9 3.6E+02 0.0079 23.2 7.2 72 25-100 245-319 (347)
213 PRK08462 biotin carboxylase; V 24.8 1.6E+02 0.0035 25.2 5.0 68 54-126 16-83 (445)
214 PRK07226 fructose-bisphosphate 24.7 3.5E+02 0.0076 21.8 6.8 72 27-99 97-182 (267)
215 cd00958 DhnA Class I fructose- 24.7 2.3E+02 0.005 22.0 5.6 71 28-100 81-166 (235)
216 PF00296 Bac_luciferase: Lucif 24.5 1.7E+02 0.0038 23.2 4.9 50 49-98 20-74 (307)
217 TIGR01302 IMP_dehydrog inosine 24.5 4.2E+02 0.009 23.3 7.6 81 14-100 212-297 (450)
218 cd07939 DRE_TIM_NifV Streptomy 24.3 2.1E+02 0.0046 22.8 5.4 45 52-96 110-158 (259)
219 cd06502 TA_like Low-specificit 24.2 2.9E+02 0.0064 21.9 6.2 61 10-70 94-164 (338)
220 COG0252 AnsB L-asparaginase/ar 24.2 1.6E+02 0.0035 25.6 4.9 53 25-77 242-295 (351)
221 PRK10090 aldehyde dehydrogenas 24.1 86 0.0019 27.1 3.2 70 34-107 95-168 (409)
222 cd08551 Fe-ADH iron-containing 24.0 2.6E+02 0.0056 23.4 6.0 69 12-80 24-95 (370)
223 cd04234 AAK_AK AAK_AK: Amino A 23.9 1.3E+02 0.0029 23.6 4.1 67 29-95 65-155 (227)
224 COG0439 AccC Biotin carboxylas 23.8 2.7E+02 0.0058 25.1 6.3 72 53-129 13-84 (449)
225 TIGR01579 MiaB-like-C MiaB-lik 23.8 1.1E+02 0.0025 26.1 3.9 49 44-92 265-320 (414)
226 cd08550 GlyDH-like Glycerol_de 23.7 1.7E+02 0.0036 24.5 4.8 72 9-80 20-92 (349)
227 cd07941 DRE_TIM_LeuA3 Desulfob 23.5 4E+02 0.0088 21.6 7.0 64 50-113 117-190 (273)
228 PF13580 SIS_2: SIS domain; PD 23.5 88 0.0019 22.6 2.8 33 38-70 103-135 (138)
229 KOG0559|consensus 23.4 55 0.0012 29.4 1.9 22 99-120 224-246 (457)
230 cd06842 PLPDE_III_Y4yA_like Ty 23.3 2.3E+02 0.0049 24.6 5.7 46 4-49 2-50 (423)
231 PF06506 PrpR_N: Propionate ca 23.3 3.1E+02 0.0068 20.6 5.9 74 9-95 75-148 (176)
232 cd04239 AAK_UMPK-like AAK_UMPK 23.3 2.3E+02 0.005 22.2 5.3 41 55-95 108-151 (229)
233 TIGR03699 mena_SCO4550 menaqui 23.2 1.2E+02 0.0026 25.2 3.9 35 49-85 178-216 (340)
234 cd06451 AGAT_like Alanine-glyo 23.1 2.5E+02 0.0055 22.6 5.7 64 9-72 95-161 (356)
235 cd01972 Nitrogenase_VnfE_like 22.9 2.4E+02 0.0053 24.3 5.8 98 12-119 162-264 (426)
236 PLN02766 coniferyl-aldehyde de 22.6 86 0.0019 27.9 3.0 69 34-107 182-255 (501)
237 TIGR02153 gatD_arch glutamyl-t 22.6 1.9E+02 0.004 25.6 5.0 50 25-75 288-338 (404)
238 TIGR02128 G6PI_arch bifunction 22.6 1.6E+02 0.0034 24.7 4.4 44 38-86 66-109 (308)
239 TIGR00274 N-acetylmuramic acid 22.5 1.3E+02 0.0028 25.1 3.9 52 39-90 127-178 (291)
240 TIGR02931 anfK_nitrog Fe-only 22.4 4.2E+02 0.0091 23.4 7.2 93 12-108 170-275 (461)
241 PF13380 CoA_binding_2: CoA bi 22.4 1.4E+02 0.0031 21.2 3.6 28 37-69 79-106 (116)
242 PRK02261 methylaspartate mutas 22.3 3.3E+02 0.0071 20.1 8.4 65 7-74 27-94 (137)
243 TIGR02803 ExbD_1 TonB system t 22.2 2.3E+02 0.0049 20.1 4.7 40 29-68 76-115 (122)
244 cd06844 STAS Sulphate Transpor 22.2 1E+02 0.0023 20.7 2.8 64 15-79 13-85 (100)
245 cd07944 DRE_TIM_HOA_like 4-hyd 22.1 4.4E+02 0.0094 21.4 7.1 64 50-113 107-177 (266)
246 TIGR03857 F420_MSMEG_2249 prob 22.1 2.2E+02 0.0048 23.9 5.2 51 47-98 9-60 (329)
247 smart00870 Asparaginase Aspara 22.0 2E+02 0.0043 24.2 5.0 50 25-75 224-274 (323)
248 PRK09441 cytoplasmic alpha-amy 21.9 1E+02 0.0022 27.1 3.3 32 46-77 75-110 (479)
249 cd03174 DRE_TIM_metallolyase D 21.8 1.5E+02 0.0032 23.1 3.9 47 50-96 113-165 (265)
250 PF05889 SLA_LP_auto_ag: Solub 21.8 1.1E+02 0.0024 27.1 3.5 81 20-100 135-240 (389)
251 TIGR01689 EcbF-BcbF capsule bi 21.7 2.6E+02 0.0056 20.6 5.0 63 52-114 27-110 (126)
252 PRK15424 propionate catabolism 21.6 3.9E+02 0.0084 24.5 7.0 74 8-94 104-177 (538)
253 cd08186 Fe-ADH8 Iron-containin 21.5 2.6E+02 0.0057 23.8 5.6 69 12-80 27-99 (383)
254 cd04731 HisF The cyclase subun 21.4 4E+02 0.0087 20.8 7.5 96 11-107 93-210 (243)
255 PRK00451 glycine dehydrogenase 21.4 1.1E+02 0.0024 26.0 3.4 48 23-70 191-238 (447)
256 PRK11302 DNA-binding transcrip 21.4 1.4E+02 0.0031 23.6 3.8 50 37-87 174-223 (284)
257 PF04748 Polysacc_deac_2: Dive 21.3 85 0.0018 25.0 2.5 42 54-96 164-205 (213)
258 PF00834 Ribul_P_3_epim: Ribul 21.3 1.8E+02 0.0039 23.0 4.3 55 20-77 63-117 (201)
259 PRK15398 aldehyde dehydrogenas 21.1 36 0.00079 30.1 0.3 71 33-107 152-230 (465)
260 PLN02656 tyrosine transaminase 21.1 3E+02 0.0065 23.2 5.9 50 21-70 154-207 (409)
261 PF04273 DUF442: Putative phos 21.0 3.2E+02 0.007 19.5 5.8 56 56-112 18-82 (110)
262 PLN00196 alpha-amylase; Provis 20.9 1.1E+02 0.0024 27.0 3.3 33 46-78 86-122 (428)
263 PRK02271 methylenetetrahydrome 20.8 2.4E+02 0.0053 23.2 5.2 49 50-98 12-60 (325)
264 PRK07094 biotin synthase; Prov 20.7 1.7E+02 0.0038 23.9 4.3 39 48-86 161-202 (323)
265 TIGR00520 asnASE_II L-asparagi 20.7 2.4E+02 0.0052 24.3 5.3 50 25-75 251-301 (349)
266 PRK11024 colicin uptake protei 20.7 2.5E+02 0.0054 20.6 4.7 40 29-68 94-133 (141)
267 PRK14339 (dimethylallyl)adenos 20.6 1.1E+02 0.0024 26.6 3.2 47 44-90 257-310 (420)
268 cd07940 DRE_TIM_IPMS 2-isoprop 20.6 2.8E+02 0.006 22.3 5.4 62 51-112 113-181 (268)
269 cd01568 QPRTase_NadC Quinolina 20.5 3.3E+02 0.0072 22.3 5.9 70 37-112 150-222 (269)
270 PRK06552 keto-hydroxyglutarate 20.5 4E+02 0.0087 21.2 6.2 67 16-96 69-135 (213)
271 cd00423 Pterin_binding Pterin 20.3 2.4E+02 0.0053 22.6 5.0 48 24-76 84-131 (258)
272 cd07083 ALDH_P5CDH ALDH subfam 20.3 1.3E+02 0.0029 26.5 3.7 69 34-106 178-250 (500)
273 TIGR03558 oxido_grp_1 lucifera 20.2 2.5E+02 0.0054 23.1 5.1 49 50-98 18-71 (323)
274 cd00959 DeoC 2-deoxyribose-5-p 20.0 1.8E+02 0.0039 22.5 4.1 66 29-97 75-151 (203)
No 1
>PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E ....
Probab=100.00 E-value=4e-60 Score=393.71 Aligned_cols=130 Identities=70% Similarity=1.084 Sum_probs=114.7
Q ss_pred chhhhhhcCCCeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhH
Q psy12654 3 LFQLNDFAPEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFI 82 (133)
Q Consensus 3 ~~~~~~~~~~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~i 82 (133)
..+||++++++|||||||||||||+||++++++++||++||||||||||||++|++++|+++||.+|||||||||+|+||
T Consensus 166 w~~lt~~~g~~~~iVGDDl~vTn~~ri~~~i~~~~~na~llK~NQigTvte~lea~~~a~~~g~~~vvS~rsgEteD~~i 245 (295)
T PF00113_consen 166 WAKLTKRLGDKIQIVGDDLFVTNPKRIKKGIEKKACNALLLKPNQIGTVTETLEAVKLAKSAGWGVVVSHRSGETEDTFI 245 (295)
T ss_dssp HHHHHHHHTTTSEEEESTTTTT-HHHHHHHHHCT--SEEEE-HHHHSSHHHHHHHHHHHHHTT-EEEEE--SS--S--HH
T ss_pred HHHHHHhhhcceeeecccccccchhhhhccchhhhccchhhhhhhhHHHHHHHHHHHHHHHCCceeeccCCCCCcCchhH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhccCceecCCCCchhHHHHHHHHHHHHHHhCCcccccCccCCCC
Q psy12654 83 ADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGANAKFAGKNFRRP 132 (133)
Q Consensus 83 adLAVgl~a~~iK~G~p~r~Er~aKyN~LLrIeeelg~~~~~~g~~~~~~ 132 (133)
||||||++++|||+|+|||+||++||||||||||+|+++++|+|++||+|
T Consensus 246 adLaVg~~a~~iK~G~p~r~Er~aKyN~LLrIeeelg~~a~~~g~~~~~~ 295 (295)
T PF00113_consen 246 ADLAVGLGAGQIKTGAPCRGERIAKYNRLLRIEEELGSKAKYAGKNFRKP 295 (295)
T ss_dssp HHHHHHTT-SEEEEESSSSHHHHHHHHHHHHHHHHHGGGSEE-GGGCTSC
T ss_pred HHHHhccCcCeEecccchhhHHHHHhhHHHHHHHHcCCCCEECChhhhCc
Confidence 99999999999999999999999999999999999999999999999997
No 2
>KOG2670|consensus
Probab=100.00 E-value=1.9e-59 Score=396.28 Aligned_cols=121 Identities=82% Similarity=1.224 Sum_probs=120.1
Q ss_pred CCeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHhhhhhhcc
Q psy12654 12 EPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIADLVVGLST 91 (133)
Q Consensus 12 ~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iadLAVgl~a 91 (133)
..||||||||+||||+||++++++++||++||||||||||||+||++++|+++||++|||||||||||+|||||+||+++
T Consensus 313 ~~iqiVgDDLtvTnpkri~~Ai~~k~cN~LLlKvNQIGtvtEsiea~~~a~~~gwgvmvSHRSGETeDtFIaDL~VGl~t 392 (433)
T KOG2670|consen 313 VGIQIVGDDLTVTNPKRIATAIEEKACNALLLKVNQIGTVTESIEAAKLARSAGWGVMVSHRSGETEDTFIADLVVGLGT 392 (433)
T ss_pred cceEEecCcccccCHHHHHHHHHHhhccceEeeccccccHHHHHHHHHHHHhcCceEEEeccCCCcccchHHHhhhhhcc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceecCCCCchhHHHHHHHHHHHHHHhCCcccccCccCCCC
Q psy12654 92 GQIKTGAPCRSERLAKYNQILRIEEELGANAKFAGKNFRRP 132 (133)
Q Consensus 92 ~~iK~G~p~r~Er~aKyN~LLrIeeelg~~~~~~g~~~~~~ 132 (133)
||||+|+|||+||++|||||||||||+++.+.|+|.+||+|
T Consensus 393 gqIKtGApcRsERlaKYNqLLRIeEelg~~a~~aG~~f~~~ 433 (433)
T KOG2670|consen 393 GQIKTGAPCRSERLAKYNQLLRIEEELGDDARYAGENFRNP 433 (433)
T ss_pred ceeecCCCchHHHHHHHHHHHHHHHHhcccceeccccccCC
Confidence 99999999999999999999999999999999999999997
No 3
>COG0148 Eno Enolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.8e-55 Score=374.11 Aligned_cols=125 Identities=56% Similarity=0.829 Sum_probs=122.6
Q ss_pred hhhhhhcCCCeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHH
Q psy12654 4 FQLNDFAPEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIA 83 (133)
Q Consensus 4 ~~~~~~~~~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~ia 83 (133)
..||.++|++|||||||||||||+||+++++++++|++|||||||||+||+++++++|+++||.+|||||||||+|+|||
T Consensus 294 ~~lt~~~g~kvqivGDDLfvTN~~~l~~gi~~g~aNaiLIK~NQIGTLTEt~~ai~~A~~~gy~~viSHRSGETeD~tIA 373 (423)
T COG0148 294 AELTKRLGDKVQIVGDDLFVTNPKRLKKGIEKGAANAILIKPNQIGTLTETLEAINLAKDAGYTAVISHRSGETEDTTIA 373 (423)
T ss_pred HHHHHhhCCeEEEECCcceecCHHHHHHHHHhccCceEEEechhcccHHHHHHHHHHHHHCCCeEEEecCCCCcccchHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCceecCCCCchhHHHHHHHHHHHHHHhCCcccccCcc
Q psy12654 84 DLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGANAKFAGKN 128 (133)
Q Consensus 84 dLAVgl~a~~iK~G~p~r~Er~aKyN~LLrIeeelg~~~~~~g~~ 128 (133)
|||||++++|||+|+|||+||++||||||||||+||+.+.|.|..
T Consensus 374 dLAVa~~agqIKTGs~sRseRiaKyNqLlrIEeeLg~~a~y~g~~ 418 (423)
T COG0148 374 DLAVATNAGQIKTGSLSRSERVAKYNELLRIEEELGDKARYAGIK 418 (423)
T ss_pred HHHHHhCCCeeecCCCcchhHHHHHHHHHHHHHHhhhccccCChH
Confidence 999999999999999999999999999999999999999999965
No 4
>PRK08350 hypothetical protein; Provisional
Probab=100.00 E-value=2.6e-51 Score=346.23 Aligned_cols=111 Identities=22% Similarity=0.289 Sum_probs=106.3
Q ss_pred chhhhhhcCCCeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhH
Q psy12654 3 LFQLNDFAPEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFI 82 (133)
Q Consensus 3 ~~~~~~~~~~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~i 82 (133)
+.+||++ ++++||||||||||||++ ++++||++||||||||||||+++++++|+++||.+|||||||||||+||
T Consensus 225 w~~lt~~-g~~iqiVGDDLfvTN~~~-----~~~~~NaiLiK~NQIGTltEt~~ai~~A~~~g~~~vvSHRSGETeD~~I 298 (341)
T PRK08350 225 FLELIAG-THGVFIDGEYLFRTRNIL-----DRRYYNALSIKPINLGTLTDLYNLVNDVKSERITPILAEAKYESADEAL 298 (341)
T ss_pred HHHHHhc-CCceEEEcccccccChhH-----hhCccceEEEeeccceeHHHHHHHHHHHHHcCCeEEeecCCCCCcchhH
Confidence 3578898 899999999999999977 8999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhccCceecCCCCchhHHHHHHHHHHHHHHhCCccc
Q psy12654 83 ADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGANAK 123 (133)
Q Consensus 83 adLAVgl~a~~iK~G~p~r~Er~aKyN~LLrIeeelg~~~~ 123 (133)
||||||++++||| |||||++||||||||||+||+++.
T Consensus 299 AdLaVa~~agqIK----~R~ER~aKyN~LlrIee~lg~~~~ 335 (341)
T PRK08350 299 PHLAVGLRCPAML----IHKDSVEKINELNRIAEDLGERGR 335 (341)
T ss_pred HHHHHHhCCCccc----cchhHHHHHHHHHHHHHHcCCCeE
Confidence 9999999999999 899999999999999999987664
No 5
>PTZ00378 hypothetical protein; Provisional
Probab=100.00 E-value=4.1e-48 Score=340.47 Aligned_cols=122 Identities=16% Similarity=0.211 Sum_probs=116.2
Q ss_pred chhhhhhcCCCeEEecCccccc-CHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEE---eecCCCCCC
Q psy12654 3 LFQLNDFAPEPIQIVGDDLTVT-NPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTM---VSHRSGETE 78 (133)
Q Consensus 3 ~~~~~~~~~~~iqivGDDl~vT-n~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~v---vS~rsGETe 78 (133)
+.+||..+|++||||||||||| ||+||++++++++||++||||||||||||+++++++|+++||.+| |||||| |
T Consensus 361 w~~lt~~lG~~iqivGDDL~vT~n~~ri~~gi~~~~~NaiLIK~NQIGTlSEtieav~lA~~~g~~~v~v~vShRSG--e 438 (518)
T PTZ00378 361 LQRLQAALGDSIVLSGVDVYARSEYKKVESGLRGLWTSNIVLNPCAIGTLSDVVEIVRAVGEDEGRAVTVLVQTLAG--N 438 (518)
T ss_pred HHHHHHHhCCeEEEECCCcCcCCCHHHHHHHHhcCCCceEEEccccceeHHHHHHHHHHHHHcCCcEEccccCCCcC--C
Confidence 3578999999999999999999 899999999999999999999999999999999999999999999 999999 7
Q ss_pred chhHHhhhhhhccCceecCCCCchhHHHHHHHHHHHHHHhCCcccccC
Q psy12654 79 DNFIADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGANAKFAG 126 (133)
Q Consensus 79 D~~iadLAVgl~a~~iK~G~p~r~Er~aKyN~LLrIeeelg~~~~~~g 126 (133)
|+||||||||++++|||+|+|||+||++||||||||||||++......
T Consensus 439 D~~IAdLAVa~ga~~IKtGa~~r~ER~aKyNqLlrIeeeLg~~~~l~~ 486 (518)
T PTZ00378 439 AATAAHLAVAMGARFLCSGGLFSAHQCEVVSQLASRQDELTHSRMLAP 486 (518)
T ss_pred ccHHHHHHHHcCCCccccCCCccchHHHHHHHHHHHHHHhCcCCccCC
Confidence 999999999999999999999999999999999999999987554433
No 6
>PTZ00081 enolase; Provisional
Probab=100.00 E-value=1.5e-44 Score=313.31 Aligned_cols=126 Identities=75% Similarity=1.108 Sum_probs=122.2
Q ss_pred chhhhhhcCCCeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhH
Q psy12654 3 LFQLNDFAPEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFI 82 (133)
Q Consensus 3 ~~~~~~~~~~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~i 82 (133)
+.+|++++|++++|+|||+++||++++++++++++||++++||||+||+||+++++++|+++||.+|+|||||||+|+||
T Consensus 314 ~~~Lt~~lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~i~iKvnqiGGITe~l~~a~lA~~~Gi~~iishrsgETed~~i 393 (439)
T PTZ00081 314 YAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEKKACNALLLKVNQIGTVTEAIEAAKLAQKNGWGVMVSHRSGETEDTFI 393 (439)
T ss_pred HHHHHHhhCCCceEEcCCcccCCHHHHHHHHHhCCCCEEEeccccccCHHHHHHHHHHHHHcCCcEEEeCCCchhHHHHH
Confidence 35788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhccCceecCCCCchhHHHHHHHHHHHHHHhCCcccccCcc
Q psy12654 83 ADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGANAKFAGKN 128 (133)
Q Consensus 83 adLAVgl~a~~iK~G~p~r~Er~aKyN~LLrIeeelg~~~~~~g~~ 128 (133)
||||||++++|||+|+|||+||++||||||||||+||+.+.|+|.+
T Consensus 394 adLAVa~~~~~iK~G~~~r~er~aKyN~llriee~l~~~~~~~~~~ 439 (439)
T PTZ00081 394 ADLVVGLGTGQIKTGAPCRSERLAKYNQLLRIEEELGSNAVYAGEN 439 (439)
T ss_pred HHHHHHcCCCceecCCCcchHHHHHHHHHHHHHHHhccccccCCCC
Confidence 9999999999999999999999999999999999999999998853
No 7
>PLN00191 enolase
Probab=100.00 E-value=4.5e-40 Score=286.62 Aligned_cols=126 Identities=74% Similarity=1.156 Sum_probs=121.6
Q ss_pred hhhhhcCCCeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHh
Q psy12654 5 QLNDFAPEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIAD 84 (133)
Q Consensus 5 ~~~~~~~~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iad 84 (133)
+|+++ .+++|+|||+++||++++++++++++||+++|||||+|++||+++++++|+++||.+++|||||||+|+++||
T Consensus 330 ~Lt~~--~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~iKl~qiGGITea~~~a~lA~~~G~~~~ishrsgET~d~~~Ad 407 (457)
T PLN00191 330 KLTSL--EDVQIVGDDLLVTNPKRVAKAIQEKACNALLLKVNQIGTVTESIEAVKMSKAAGWGVMTSHRSGETEDSFIAD 407 (457)
T ss_pred HHHcc--CCCcEEccCcccCCHHHHHHHHHhCCCCEEEecccccCCHHHHHHHHHHHHHCCCEEEeCCCCccchHHHHHH
Confidence 56665 6899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCceecCCCCchhHHHHHHHHHHHHHHhCCcccccCccCCCC
Q psy12654 85 LVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGANAKFAGKNFRRP 132 (133)
Q Consensus 85 LAVgl~a~~iK~G~p~r~Er~aKyN~LLrIeeelg~~~~~~g~~~~~~ 132 (133)
|+||++++|||+|+|||+||++||||||||||+||+.+.|+|..||++
T Consensus 408 lava~~~~~ik~G~~~r~er~aKyN~llriee~l~~~~~~~~~~~~~~ 455 (457)
T PLN00191 408 LAVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGDEAVYAGENFRKP 455 (457)
T ss_pred HHHHhCCCccccCCCcchHHHHHHHHHHHHHHHhcccceecccccccC
Confidence 999999999999999999999999999999999999999999888874
No 8
>PRK00077 eno enolase; Provisional
Probab=100.00 E-value=4.3e-39 Score=276.91 Aligned_cols=129 Identities=57% Similarity=0.825 Sum_probs=123.9
Q ss_pred chhhhhhcCCCeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhH
Q psy12654 3 LFQLNDFAPEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFI 82 (133)
Q Consensus 3 ~~~~~~~~~~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~i 82 (133)
+..|+++.+.+++|+|||+++||+++++++++.++||.+++||||+|++|++++++++|+.+|+.+|+|||||||+|+++
T Consensus 294 ~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~~a~d~v~ik~~~~GGitea~~ia~lA~~~gi~~~vsh~sgEt~d~~~ 373 (425)
T PRK00077 294 WKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKGAANSILIKVNQIGTLTETLDAIELAKRAGYTAVVSHRSGETEDTTI 373 (425)
T ss_pred HHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEEeCCCCcchHHHH
Confidence 34678888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhccCceecCCCCchhHHHHHHHHHHHHHHhCCcccccC-ccCCC
Q psy12654 83 ADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGANAKFAG-KNFRR 131 (133)
Q Consensus 83 adLAVgl~a~~iK~G~p~r~Er~aKyN~LLrIeeelg~~~~~~g-~~~~~ 131 (133)
||||||++++|||+|+|+|+||++||||||||||+||+.+.|+| ..||+
T Consensus 374 a~lava~~~~~ik~G~~~~~er~~k~n~ll~i~~~l~~~~~~~~~~~~~~ 423 (425)
T PRK00077 374 ADLAVATNAGQIKTGSLSRSERIAKYNQLLRIEEELGDAARYAGKKAFKN 423 (425)
T ss_pred HHHHHHhCCccccCCCCcchHHHHHHHHHHHHHHHhcccceecchhhccc
Confidence 99999999999999999999999999999999999999999999 57775
No 9
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=100.00 E-value=1.9e-38 Score=272.84 Aligned_cols=128 Identities=54% Similarity=0.797 Sum_probs=123.0
Q ss_pred hhhhhhcCCCeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHH
Q psy12654 4 FQLNDFAPEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIA 83 (133)
Q Consensus 4 ~~~~~~~~~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~ia 83 (133)
..|+++.+.+++|+|||+++||+++++++++.++||.+++||||+|++|++++++++|+.+||.+|+|||||||+|+++|
T Consensus 296 ~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~~a~d~v~ik~~~iGGItea~~ia~lA~~~Gi~~vv~h~sgEt~d~~~a 375 (425)
T TIGR01060 296 AELTKELGDKVQIVGDDLFVTNTEILREGIEMGVANSILIKPNQIGTLTETLDAVELAKKAGYTAVISHRSGETEDTTIA 375 (425)
T ss_pred HHHHHhcCCCCeEEeCCCcccCHHHHHHHHHhCCCCEEEecccccCCHHHHHHHHHHHHHcCCcEEEecCCcccHHHHHH
Confidence 45788888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCceecCCCCchhHHHHHHHHHHHHHHhCCcccccC-ccCCC
Q psy12654 84 DLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGANAKFAG-KNFRR 131 (133)
Q Consensus 84 dLAVgl~a~~iK~G~p~r~Er~aKyN~LLrIeeelg~~~~~~g-~~~~~ 131 (133)
|||||++++|||+|+|+|+||++||||||||||+|++.+.|+| ..||.
T Consensus 376 ~lava~~~~~ik~g~~~~~er~~kyn~ll~i~~~l~~~~~~~~~~~~~~ 424 (425)
T TIGR01060 376 DLAVALNAGQIKTGSLSRSERIAKYNQLLRIEEELGDSARYAGKNTFYR 424 (425)
T ss_pred HHHHHhCcCccccCCCchHHHHHHHHHHHHHHHHhcccceecchhccCC
Confidence 9999999999999999999999999999999999999999999 46763
No 10
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=100.00 E-value=1.8e-37 Score=265.73 Aligned_cols=115 Identities=68% Similarity=0.980 Sum_probs=111.3
Q ss_pred chhhhhhcCCCeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhH
Q psy12654 3 LFQLNDFAPEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFI 82 (133)
Q Consensus 3 ~~~~~~~~~~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~i 82 (133)
+..|++++|.+++|+|||+++||+++++++++.++||.+++||||+|++|++++++++|+++||.+|+|||||||+|+|+
T Consensus 294 ~~~L~~~~g~~ipi~gdE~~~~~~~~~~~~i~~~a~d~v~ik~~~iGGite~~~ia~lA~~~G~~~~~sh~sget~d~~~ 373 (408)
T cd03313 294 WAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEKKAANALLIKVNQIGTLTETIEAIKLAKKNGYGVVVSHRSGETEDTFI 373 (408)
T ss_pred HHHHHHhcCCCCeEEcCCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCeEEccCCCchhHHHHH
Confidence 34678888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhccCceecCCCCchhHHHHHHHHHHHHHH
Q psy12654 83 ADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEE 117 (133)
Q Consensus 83 adLAVgl~a~~iK~G~p~r~Er~aKyN~LLrIeee 117 (133)
||||||++++|||+|+|||+||++||||||||||+
T Consensus 374 adlava~~~~~ik~G~~~r~er~~k~n~ll~i~~~ 408 (408)
T cd03313 374 ADLAVALGAGQIKTGAPCRSERTAKYNQLLRIEEE 408 (408)
T ss_pred HHHHHHhCcCccccCCCcchHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999985
No 11
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=98.75 E-value=1.1e-07 Score=82.77 Aligned_cols=107 Identities=20% Similarity=0.258 Sum_probs=90.3
Q ss_pred cCCCeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchh--HHhhhh
Q psy12654 10 APEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNF--IADLVV 87 (133)
Q Consensus 10 ~~~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~--iadLAV 87 (133)
.+.++.|++|+. +++++.+.+.++.++|+.+-+|+++.|.+|++++++.+|+.+|+.+++++..+||.-.. .+|+|.
T Consensus 294 ~~~~vPI~aDEs-~~t~~d~~~~i~~~a~d~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~~~~es~I~~aa~~Hlaa 372 (408)
T TIGR01502 294 RGVDAEIVADEW-CNTVEDVKFFTDAKAGHMVQIKTPDVGGVNNIARAIMYCKANGMGAYVGGTCNETNRSAEVTTHVGM 372 (408)
T ss_pred CCCCceEEecCC-CCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 357899999976 88899999999999999999999999999999999999999999999998888887544 349999
Q ss_pred hhccCceec--CCCCchhH-HHHHHHHHHHHHHh
Q psy12654 88 GLSTGQIKT--GAPCRSER-LAKYNQILRIEEEL 118 (133)
Q Consensus 88 gl~a~~iK~--G~p~r~Er-~aKyN~LLrIeeel 118 (133)
++.+.|+-. |- .--|. +-.||++.|.-..+
T Consensus 373 a~~~~~~l~kpg~-g~d~~~~~~~ne~~r~~~~~ 405 (408)
T TIGR01502 373 ATGARQVLAKPGM-GVDEGMMIVKNEMNRVLALV 405 (408)
T ss_pred hcCCCceEecCCC-CcchhHHHHHHHHHHHHHHh
Confidence 999988844 42 12344 78899988875543
No 12
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=98.53 E-value=3.4e-07 Score=78.65 Aligned_cols=85 Identities=19% Similarity=0.313 Sum_probs=77.1
Q ss_pred CCCeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchh--HHhhhhh
Q psy12654 11 PEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNF--IADLVVG 88 (133)
Q Consensus 11 ~~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~--iadLAVg 88 (133)
+.++.|++|+. ++++..+++.++.++|+.+-+|+++.|.+|++++.+.+|+.+|+.++++++++|+.... .+|++.+
T Consensus 259 ~~~iPIa~dEs-~~t~~d~~~li~~~a~div~~kl~k~GGIt~a~kia~lA~a~Gi~~~~h~~~~es~I~~aa~lHlaaa 337 (369)
T cd03314 259 GVGVRIVADEW-CNTLEDIRDFADAGAAHMVQIKTPDLGGIDNTIDAVLYCKEHGVGAYLGGSCNETDISARVTVHVALA 337 (369)
T ss_pred CCCceEEecCC-cCCHHHHHHHHHhCCCCEEEecchhcCCHHHHHHHHHHHHHcCCcEEEeCCCCCchHHHHHHHHHHHh
Confidence 46899999977 55799999999999999999999999999999999999999999999999988998764 4599999
Q ss_pred hccCceec
Q psy12654 89 LSTGQIKT 96 (133)
Q Consensus 89 l~a~~iK~ 96 (133)
+.+.|+-.
T Consensus 338 ~~~~~~~~ 345 (369)
T cd03314 338 TRADQMLA 345 (369)
T ss_pred cCCcceee
Confidence 99998865
No 13
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=97.63 E-value=0.00017 Score=56.84 Aligned_cols=83 Identities=28% Similarity=0.266 Sum_probs=64.5
Q ss_pred hhhhhcCCCeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCC-CchhHH
Q psy12654 5 QLNDFAPEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGET-EDNFIA 83 (133)
Q Consensus 5 ~~~~~~~~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGET-eD~~ia 83 (133)
.|.+. ..+.|.+|+. ++++..+.+.++.++++.+.+||++.|.+|++++++.+|+.+|+.+++++..+.. .....+
T Consensus 139 ~L~~~--~~~pIa~dEs-~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~~s~i~~~a~~ 215 (229)
T cd00308 139 ALRRR--TGIPIAADES-VTTVDDALEALELGAVDILQIKPTRVGGLTESRRAADLAEAFGIRVMVHGTLESSIGTAAAL 215 (229)
T ss_pred HHHhh--CCCCEEeCCC-CCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEeecCCCCCHHHHHHHH
Confidence 34443 4567888775 4567777788999999999999999999999999999999999999998774322 234555
Q ss_pred hhhhhhc
Q psy12654 84 DLVVGLS 90 (133)
Q Consensus 84 dLAVgl~ 90 (133)
|++.++.
T Consensus 216 hlaa~~~ 222 (229)
T cd00308 216 HLAAALP 222 (229)
T ss_pred HHHHhCC
Confidence 7766653
No 14
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=97.41 E-value=0.00053 Score=57.24 Aligned_cols=80 Identities=19% Similarity=0.308 Sum_probs=66.0
Q ss_pred hhhhhcCCCeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHh
Q psy12654 5 QLNDFAPEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIAD 84 (133)
Q Consensus 5 ~~~~~~~~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iad 84 (133)
.|.+. ..+.|.+|+ .+.++..++..++.++++.+.+||...|.+|++++.+.+|+.+|+.+++++. .|+.-...+.
T Consensus 222 ~l~~~--~~~pia~dE-s~~~~~~~~~~~~~~~~d~~~ik~~~~GGit~~~~i~~~A~~~gi~~~~g~~-~es~l~~~a~ 297 (354)
T cd03317 222 ELQKL--LKTPICLDE-SIQSAEDARKAIELGACKIINIKPGRVGGLTEALKIHDLCQEHGIPVWCGGM-LESGIGRAHN 297 (354)
T ss_pred HHHhh--cCCCEEeCC-ccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCcEEecCc-ccchHHHHHH
Confidence 44444 356788887 5677999999999999999999999999999999999999999999998754 5776666665
Q ss_pred hhhh
Q psy12654 85 LVVG 88 (133)
Q Consensus 85 LAVg 88 (133)
+.++
T Consensus 298 ~hla 301 (354)
T cd03317 298 VALA 301 (354)
T ss_pred HHHH
Confidence 5554
No 15
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=97.36 E-value=0.00083 Score=55.46 Aligned_cols=110 Identities=20% Similarity=0.288 Sum_probs=78.8
Q ss_pred hhhhhcCCCeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchh--H
Q psy12654 5 QLNDFAPEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNF--I 82 (133)
Q Consensus 5 ~~~~~~~~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~--i 82 (133)
..-.+.|.++.||.|. ++...+.|+...+.+++.-+-||.--.|.+..++||+-+++++|.+..+....-||.-+. -
T Consensus 130 ~~L~~~g~~v~iVADE-WCNT~eDI~~F~da~A~dmVQIKtPDLGgi~ntieAvlyCk~~gvgaY~GGtCNETd~SArv~ 208 (248)
T PF07476_consen 130 EELDRRGINVEIVADE-WCNTLEDIREFADAKAADMVQIKTPDLGGINNTIEAVLYCKEHGVGAYLGGTCNETDRSARVC 208 (248)
T ss_dssp HHHHHCT--EEEEE-T-T--SHHHHHHHHHTT-SSEEEE-GGGGSSTHHHHHHHHHHHHTT-EEEE---TTS-HHHHHHH
T ss_pred HHHHhcCCCCeEEeeh-hcCCHHHHHHHHhcCCcCEEEecCCCccchhhHHHHHHHHHhcCCceeecccccccchhHHHH
Confidence 3445678999999975 688899999999999999999999999999999999999999999999999999996543 4
Q ss_pred HhhhhhhccCceec--CCCCchhH-HHHHHHHHHHHH
Q psy12654 83 ADLVVGLSTGQIKT--GAPCRSER-LAKYNQILRIEE 116 (133)
Q Consensus 83 adLAVgl~a~~iK~--G~p~r~Er-~aKyN~LLrIee 116 (133)
+|+|++.+..|+-. |--. -|- +--||++.|+-.
T Consensus 209 ~hvalAt~p~q~LaKPGMG~-DEG~mIV~NEM~R~la 244 (248)
T PF07476_consen 209 VHVALATRPDQMLAKPGMGV-DEGYMIVTNEMNRTLA 244 (248)
T ss_dssp HHHHHHCT-SEEE--SSSSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHhcCCCCCc-cchHHHHHHHHHHHHH
Confidence 59999999999844 3222 233 466888887644
No 16
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=96.96 E-value=0.0027 Score=53.33 Aligned_cols=81 Identities=19% Similarity=0.249 Sum_probs=63.7
Q ss_pred hhhhhcCCCeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCch--hH
Q psy12654 5 QLNDFAPEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDN--FI 82 (133)
Q Consensus 5 ~~~~~~~~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~--~i 82 (133)
+|.+. ..+.|.+|+- +.++..+.+.++.++++.+.+||...|-+|++++.+.+|+.+|+.+++++.. |+.=. ..
T Consensus 233 ~l~~~--~~~pia~dE~-~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~~-~s~i~~aa~ 308 (365)
T cd03318 233 RLRSR--NRVPIMADES-VSGPADAFELARRGAADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTML-ESSIGTAAS 308 (365)
T ss_pred HHHhh--cCCCEEcCcc-cCCHHHHHHHHHhCCCCeEEEeecccCCHHHHHHHHHHHHHcCCceeecCcc-hhHHHHHHH
Confidence 44554 4677888875 5679999999999999999999999999999999999999999999877443 44322 23
Q ss_pred Hhhhhhh
Q psy12654 83 ADLVVGL 89 (133)
Q Consensus 83 adLAVgl 89 (133)
+|+|.++
T Consensus 309 ~hlaaa~ 315 (365)
T cd03318 309 AHLFATL 315 (365)
T ss_pred HHHHHhC
Confidence 3555444
No 17
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=96.92 E-value=0.0028 Score=52.18 Aligned_cols=76 Identities=22% Similarity=0.290 Sum_probs=61.9
Q ss_pred CCeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHH--hhhhhh
Q psy12654 12 EPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIA--DLVVGL 89 (133)
Q Consensus 12 ~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~ia--dLAVgl 89 (133)
.++.|.+|.- +.++..+++.++.++++.+.+||..+|.+|++++++.+|+++|+.++++... |+.=.+.+ ||+..+
T Consensus 227 ~~ipIa~~E~-~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~~~~-~~~i~~~a~~hl~a~~ 304 (316)
T cd03319 227 SPLPIMADES-CFSAADAARLAGGGAYDGINIKLMKTGGLTEALRIADLARAAGLKVMVGCMV-ESSLSIAAAAHLAAAK 304 (316)
T ss_pred CCCCEEEeCC-CCCHHHHHHHHhcCCCCEEEEeccccCCHHHHHHHHHHHHHcCCCEEEECch-hhHHHHHHHHHHHhhc
Confidence 4578888885 5678999999999999999999999999999999999999999999998554 55333333 554443
No 18
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=96.87 E-value=0.0048 Score=51.43 Aligned_cols=70 Identities=19% Similarity=0.197 Sum_probs=59.7
Q ss_pred hhhhhcCCCeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCC
Q psy12654 5 QLNDFAPEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETE 78 (133)
Q Consensus 5 ~~~~~~~~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETe 78 (133)
+|.+. .++.|.+|+ .+.++..+.+.++.++++.+.+||...|-+|++++.+.+|+.+|+.+++++.. |+.
T Consensus 217 ~l~~~--~~~pia~dE-s~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~~~~~A~~~gi~~~~~~~~-es~ 286 (324)
T TIGR01928 217 ELAKG--TITPICLDE-SITSLDDARNLIELGNVKVINIKPGRLGGLTEVQKAIETCREHGAKVWIGGML-ETG 286 (324)
T ss_pred HHHhh--cCCCEeeCC-CcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHHHHHHHHHcCCeEEEcceE-ccc
Confidence 44444 457788888 57789999999999999999999999999999999999999999999988433 553
No 19
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=96.83 E-value=0.0027 Score=52.76 Aligned_cols=77 Identities=17% Similarity=0.186 Sum_probs=61.8
Q ss_pred CCeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCC-chhHHhhhhhhc
Q psy12654 12 EPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETE-DNFIADLVVGLS 90 (133)
Q Consensus 12 ~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETe-D~~iadLAVgl~ 90 (133)
..+.|+.|.- +.+++.+.+.++.++++.+-+||...|.+|++++.+++|+++|+.++++.. ++.- -...+|||.++.
T Consensus 239 ~~ipi~~dE~-~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~~-~~~i~~aa~~hla~a~~ 316 (357)
T cd03316 239 TSVPIAAGEN-LYTRWEFRDLLEAGAVDIIQPDVTKVGGITEAKKIAALAEAHGVRVAPHGA-GGPIGLAASLHLAAALP 316 (357)
T ss_pred CCCCEEeccc-cccHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeEeccCC-CCHHHHHHHHHHHHhCc
Confidence 3577888876 456999999999999999999999999999999999999999999777654 3322 234457766653
No 20
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=96.72 E-value=0.0029 Score=44.40 Aligned_cols=66 Identities=18% Similarity=0.255 Sum_probs=53.1
Q ss_pred ccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhH--Hhhhhhhc
Q psy12654 23 VTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFI--ADLVVGLS 90 (133)
Q Consensus 23 vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~i--adLAVgl~ 90 (133)
+.++..+++.++.++++.+-+|+...|-+|+++..+.+|+.+|+.+++..- ++.=.+. +|++.++.
T Consensus 4 ~~~~~~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~--~~~i~~aa~~hlaaa~~ 71 (111)
T PF13378_consen 4 LFSLHDFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM--ESGIGLAASLHLAAALP 71 (111)
T ss_dssp SSSHHHHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS--SSHHHHHHHHHHHHTST
T ss_pred CCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC--CCcHHHHHHHHHHHhcC
Confidence 456888999999999999999999999999999999999999999877764 5533344 45555553
No 21
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=96.64 E-value=0.0054 Score=51.60 Aligned_cols=78 Identities=23% Similarity=0.261 Sum_probs=60.7
Q ss_pred hhhhhhcCCCeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHH
Q psy12654 4 FQLNDFAPEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIA 83 (133)
Q Consensus 4 ~~~~~~~~~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~ia 83 (133)
.+|.++.+ +-|..|+- +.++..+.+.++.++++.+.+||+.+|-+|++++.+.+|+.+|+.++ +|..++ .-+
T Consensus 230 ~~l~~~~~--ipia~~E~-~~~~~~~~~~i~~~~~d~i~~~~~~~GGit~~~~ia~~A~~~gi~~~-~h~~~~----~~~ 301 (355)
T cd03321 230 ARIASALR--TPVQMGEN-WLGPEEMFKALSAGACDLVMPDLMKIGGVTGWLRASALAEQAGIPMS-SHLFQE----ISA 301 (355)
T ss_pred HHHHHhcC--CCEEEcCC-CcCHHHHHHHHHhCCCCeEecCHhhhCCHHHHHHHHHHHHHcCCeec-ccchHH----HHH
Confidence 35666654 44455554 35799999999999999999999999999999999999999999864 665432 456
Q ss_pred hhhhhh
Q psy12654 84 DLVVGL 89 (133)
Q Consensus 84 dLAVgl 89 (133)
|++.++
T Consensus 302 h~~aa~ 307 (355)
T cd03321 302 HLLAVT 307 (355)
T ss_pred HHHHhC
Confidence 776554
No 22
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=96.57 E-value=0.0088 Score=48.05 Aligned_cols=81 Identities=20% Similarity=0.200 Sum_probs=62.5
Q ss_pred hhhhhcCCCeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCc--hhH
Q psy12654 5 QLNDFAPEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETED--NFI 82 (133)
Q Consensus 5 ~~~~~~~~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD--~~i 82 (133)
.+.+. ..+.|++|.- +.++..+.+.++.++++.+.+||...|.+|++++.+.+|+..|+.++++... |+.= ...
T Consensus 174 ~l~~~--~~ipia~dE~-~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~~~~~A~~~gi~~~~~~~~-~s~i~~~a~ 249 (265)
T cd03315 174 ALARA--TDTPIMADES-AFTPHDAFRELALGAADAVNIKTAKTGGLTKAQRVLAVAEALGLPVMVGSMI-ESGLGTLAN 249 (265)
T ss_pred HHHhh--CCCCEEECCC-CCCHHHHHHHHHhCCCCEEEEecccccCHHHHHHHHHHHHHcCCcEEecCcc-chHHHHHHH
Confidence 34444 3566788775 4568889999999999999999999999999999999999999999998443 4432 233
Q ss_pred Hhhhhhh
Q psy12654 83 ADLVVGL 89 (133)
Q Consensus 83 adLAVgl 89 (133)
+|+|.++
T Consensus 250 ~hlaa~~ 256 (265)
T cd03315 250 AHLAAAL 256 (265)
T ss_pred HHHHHhC
Confidence 4555554
No 23
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=96.50 E-value=0.009 Score=50.48 Aligned_cols=74 Identities=20% Similarity=0.235 Sum_probs=61.1
Q ss_pred CCeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHhhhhhhc
Q psy12654 12 EPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIADLVVGLS 90 (133)
Q Consensus 12 ~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iadLAVgl~ 90 (133)
..+.|.+|+...+++....+.++.++++.+.+|++..|-+|++++++.+|+.+|+.+++ |.. -..-+|++.++.
T Consensus 239 ~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~~ia~~a~~~gi~~~~-h~~----~~a~~hlaaa~~ 312 (368)
T cd03329 239 LDIPILGTEHSRGALESRADWVLAGATDFLRADVNLVGGITGAMKTAHLAEAFGLDVEL-HGN----GAANLHVIAAIR 312 (368)
T ss_pred CCCCEEccCcccCcHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEEE-ECh----HHHHHHHHhcCC
Confidence 35778888887666999999999999999999999999999999999999999999876 332 234457766553
No 24
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=96.42 E-value=0.012 Score=49.84 Aligned_cols=70 Identities=10% Similarity=0.091 Sum_probs=57.8
Q ss_pred hhhhhcCCCeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCC
Q psy12654 5 QLNDFAPEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGET 77 (133)
Q Consensus 5 ~~~~~~~~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGET 77 (133)
.|.++. .+-|.+|+- ++++...++.++.++++.+.+||...|.+|++++.+++|+.+|+.+++.....++
T Consensus 208 ~L~~~~--~~pia~gE~-~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~~~s 277 (361)
T cd03322 208 LIRQHT--ATPLAVGEV-FNSIWDWQNLIQERLIDYIRTTVSHAGGITPARKIADLASLYGVRTGWHGPTDLS 277 (361)
T ss_pred HHHhcC--CCCEEeccC-CcCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeeccCCCCcc
Confidence 344443 566788885 5779999999999999999999999999999999999999999998874443344
No 25
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=96.30 E-value=0.008 Score=50.36 Aligned_cols=77 Identities=21% Similarity=0.233 Sum_probs=59.9
Q ss_pred hhhhhcCCCeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHh
Q psy12654 5 QLNDFAPEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIAD 84 (133)
Q Consensus 5 ~~~~~~~~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iad 84 (133)
.|.++ ..+.|.+|+... ++..+++.++.++++.+.+||...|-+|++++.+.+|+.+|+.++ .|.+ ...-+|
T Consensus 216 ~l~~~--~~~pIa~gE~~~-~~~~~~~~i~~~a~d~i~~d~~~~GGit~~~~i~~~A~~~g~~~~-~h~~----~~a~~h 287 (341)
T cd03327 216 ELKKA--TGIPISTGEHEY-TVYGFKRLLEGRAVDILQPDVNWVGGITELKKIAALAEAYGVPVV-PHAS----QIYNYH 287 (341)
T ss_pred HHHhc--CCCCeEeccCcc-CHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeec-cccH----HHHHHH
Confidence 45554 457788888744 578999999999999999999999999999999999999999844 5653 123345
Q ss_pred hhhhh
Q psy12654 85 LVVGL 89 (133)
Q Consensus 85 LAVgl 89 (133)
++.++
T Consensus 288 laaa~ 292 (341)
T cd03327 288 FIMSE 292 (341)
T ss_pred HHHhC
Confidence 55544
No 26
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=96.10 E-value=0.024 Score=47.17 Aligned_cols=82 Identities=20% Similarity=0.120 Sum_probs=64.8
Q ss_pred hhhhhcCCCeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCC--chhH
Q psy12654 5 QLNDFAPEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETE--DNFI 82 (133)
Q Consensus 5 ~~~~~~~~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETe--D~~i 82 (133)
.+.+.. .+-|..|+... ++..+.+.++..++..+.+||...|-+|++++.+++|+.+|..+++++.. ||. -.+.
T Consensus 200 ~l~~~~--~~Pia~dEs~~-~~~d~~~~~~~~~~d~i~ik~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~-es~i~~aa~ 275 (307)
T TIGR01927 200 AFSEAT--GTAIALDESLW-ELPQLADEYGPGWRGALVIKPAIIGSPAKLRDLAQKAHRLGLQAVFSSVF-ESSIALGQL 275 (307)
T ss_pred HHHHhC--CCCEEeCCCcC-ChHHHHHHHhcCCCceEEECchhcCCHHHHHHHHHHHHHcCCCEEEECcc-chHHHHHHH
Confidence 344443 56688888755 47788888999999999999999999999999999999999999999543 553 2334
Q ss_pred Hhhhhhhc
Q psy12654 83 ADLVVGLS 90 (133)
Q Consensus 83 adLAVgl~ 90 (133)
+|++-.++
T Consensus 276 ~hlaa~~~ 283 (307)
T TIGR01927 276 ARLAAKLS 283 (307)
T ss_pred HHHHHHhC
Confidence 57766664
No 27
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=95.97 E-value=0.02 Score=48.23 Aligned_cols=80 Identities=11% Similarity=0.060 Sum_probs=61.0
Q ss_pred hhhhhcCCCeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCch--hH
Q psy12654 5 QLNDFAPEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDN--FI 82 (133)
Q Consensus 5 ~~~~~~~~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~--~i 82 (133)
+|.++ ..+-|.+|+. +.++..+...++.++++.+-+||...|-+|++++++++|+.+|..++. |.. |+.=. ..
T Consensus 221 ~L~~~--~~~pia~dEs-~~~~~~~~~~~~~~~~d~v~~d~~~~GGit~~~~~~~lA~~~gi~~~~-h~~-~s~i~~~a~ 295 (352)
T cd03325 221 EIAAR--TTIPIATGER-LFSRWDFKELLEDGAVDIIQPDISHAGGITELKKIAAMAEAYDVALAP-HCP-LGPIALAAS 295 (352)
T ss_pred HHHHh--CCCCEEeccc-ccCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCcEec-cCC-CChHHHHHH
Confidence 34444 3567788875 567999999999999999999999999999999999999999999884 433 44323 33
Q ss_pred Hhhhhhh
Q psy12654 83 ADLVVGL 89 (133)
Q Consensus 83 adLAVgl 89 (133)
++|+.++
T Consensus 296 ~hlaa~~ 302 (352)
T cd03325 296 LHVDAST 302 (352)
T ss_pred HHHHHhc
Confidence 3554443
No 28
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=95.95 E-value=0.028 Score=47.39 Aligned_cols=64 Identities=22% Similarity=0.283 Sum_probs=55.5
Q ss_pred hhhhhcCCCeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEee
Q psy12654 5 QLNDFAPEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVS 71 (133)
Q Consensus 5 ~~~~~~~~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS 71 (133)
+|.++ ..+.|..|+. ++++..+.+.++..+++.+-+||..+|-+|++++.+.+|+.+|..++++
T Consensus 232 ~l~~~--~~~pia~dE~-~~~~~~~~~~~~~~~~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~ 295 (368)
T TIGR02534 232 RLTRR--FNVPIMADES-VTGPADALAIAKASAADVFALKTTKSGGLLESKKIAAIAEAAGIALYGG 295 (368)
T ss_pred HHHHh--CCCCEEeCcc-cCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCceeee
Confidence 44454 4677888876 5778888899999999999999999999999999999999999998766
No 29
>PRK14017 galactonate dehydratase; Provisional
Probab=95.75 E-value=0.026 Score=48.01 Aligned_cols=66 Identities=11% Similarity=0.116 Sum_probs=55.9
Q ss_pred hhhhhcCCCeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecC
Q psy12654 5 QLNDFAPEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHR 73 (133)
Q Consensus 5 ~~~~~~~~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~r 73 (133)
.|++. ..+-|.+|+- +.++..+.+.++.++++.+-+||...|-+|++++++.+|+.+|..+++...
T Consensus 222 ~L~~~--~~~pIa~dEs-~~~~~~~~~li~~~a~d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~ 287 (382)
T PRK14017 222 EIAAQ--TSIPIATGER-LFSRWDFKRVLEAGGVDIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCP 287 (382)
T ss_pred HHHhc--CCCCEEeCCc-cCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHHcCCeEeecCC
Confidence 34444 3567888886 566999999999999999999999999999999999999999999777533
No 30
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=95.43 E-value=0.042 Score=44.33 Aligned_cols=76 Identities=20% Similarity=0.178 Sum_probs=59.5
Q ss_pred CCeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchh--HHhhhhhh
Q psy12654 12 EPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNF--IADLVVGL 89 (133)
Q Consensus 12 ~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~--iadLAVgl 89 (133)
.++-|..|.-. .++....+.++.++++.+.+||...|.+|++++.+++|+.+|+.++++.. -|+.=.. .+|++..+
T Consensus 175 ~~~PIa~dEs~-~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~gi~~~~~~~-~es~ig~aa~~hlaa~~ 252 (263)
T cd03320 175 AGVPIALDESL-RRLDDPLALAAAGALGALVLKPALLGGPRALLELAEEARARGIPAVVSSA-LESSIGLGALAHLAAAL 252 (263)
T ss_pred cCCCeeeCCcc-ccccCHHHHHhcCCCCEEEECchhcCCHHHHHHHHHHHHHcCCCEEEEcc-hhhHHHHHHHHHHHHhC
Confidence 45778888754 45777888899999999999999999999999999999999999999833 3553222 23555444
No 31
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=95.35 E-value=0.068 Score=46.02 Aligned_cols=69 Identities=9% Similarity=0.037 Sum_probs=57.0
Q ss_pred hhhhcCCCeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCC
Q psy12654 6 LNDFAPEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGET 77 (133)
Q Consensus 6 ~~~~~~~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGET 77 (133)
|.+.. .+-|.+|+-. .++...++.++.++++.+-+|+...|-+|++++.+.+|+.+|..+++....+++
T Consensus 252 L~~~~--~iPIa~dEs~-~~~~~~~~li~~~a~dii~~d~~~~GGit~~~kia~lA~~~gi~~~~h~~~~~s 320 (404)
T PRK15072 252 IRQHT--TTPLAVGEVF-NSIWDCKQLIEEQLIDYIRTTVTHAGGITHLRRIADFAALYQVRTGSHGPTDLS 320 (404)
T ss_pred HHhcC--CCCEEeCcCc-cCHHHHHHHHHcCCCCEEecCccccCcHHHHHHHHHHHHHcCCceeeccCcccc
Confidence 44443 4667777754 469999999999999999999999999999999999999999999875444444
No 32
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=95.21 E-value=0.078 Score=45.72 Aligned_cols=81 Identities=12% Similarity=0.215 Sum_probs=61.8
Q ss_pred hhhhhcCCCeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchh--H
Q psy12654 5 QLNDFAPEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNF--I 82 (133)
Q Consensus 5 ~~~~~~~~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~--i 82 (133)
.|.+.. .+-|..|+. ++++...+..++.++++.+.+|+..+|-+|++++.+.+|+.+|+.+++ |..+|+.=.. .
T Consensus 255 ~L~~~~--~~PIa~dEs-~~~~~~~~~~i~~~avdil~~d~~~~GGit~~~kia~~A~~~gi~~~~-h~~~e~~i~~aa~ 330 (395)
T cd03323 255 EFRRAT--GLPLATNMI-VTDFRQLGHAIQLNAVDIPLADHHFWGGMRGSVRVAQVCETWGLGWGM-HSNNHLGISLAMM 330 (395)
T ss_pred HHHHhc--CCCEEcCCc-ccCHHHHHHHHHcCCCcEEeeccccccCHHHHHHHHHHHHHcCCeEEE-ecCcccHHHHHHH
Confidence 344443 466777765 567889999999999999999999999999999999999999999876 4456653332 2
Q ss_pred Hhhhhhh
Q psy12654 83 ADLVVGL 89 (133)
Q Consensus 83 adLAVgl 89 (133)
++++.++
T Consensus 331 ~hlaaa~ 337 (395)
T cd03323 331 THVAAAA 337 (395)
T ss_pred HHHHHhC
Confidence 3554443
No 33
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=94.72 E-value=0.12 Score=45.53 Aligned_cols=80 Identities=10% Similarity=0.132 Sum_probs=59.3
Q ss_pred hhhhhcCCCeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCc--hhH
Q psy12654 5 QLNDFAPEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETED--NFI 82 (133)
Q Consensus 5 ~~~~~~~~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD--~~i 82 (133)
.|.++ .++-|.+|.. ++++..+++.++.++++.+.+||... -+|++++.+.+|+.+|..+ .+|...++.= ...
T Consensus 273 ~Lr~~--~~iPIa~dEs-~~~~~~~~~li~~~avdi~~~d~~~g-GIt~~~kIa~lA~a~Gi~v-~~h~~~~~~i~~aa~ 347 (441)
T TIGR03247 273 EFRRA--TGLPTATNMI-ATDWRQMGHALQLQAVDIPLADPHFW-TMQGSVRVAQMCHDWGLTW-GSHSNNHFDISLAMF 347 (441)
T ss_pred HHHHh--CCCCEEcCCc-cCCHHHHHHHHHhCCCCEEeccCCcc-hHHHHHHHHHHHHHcCCEE-EEeCCccCHHHHHHH
Confidence 44444 4677888874 66799999999999999999999644 4999999999999999864 4666544432 233
Q ss_pred Hhhhhhh
Q psy12654 83 ADLVVGL 89 (133)
Q Consensus 83 adLAVgl 89 (133)
+|+|.++
T Consensus 348 ~hlaaa~ 354 (441)
T TIGR03247 348 THVAAAA 354 (441)
T ss_pred HHHHHhC
Confidence 4665543
No 34
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=94.57 E-value=0.13 Score=43.57 Aligned_cols=78 Identities=23% Similarity=0.322 Sum_probs=57.3
Q ss_pred hhhhhcCCCeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHH-
Q psy12654 5 QLNDFAPEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIA- 83 (133)
Q Consensus 5 ~~~~~~~~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~ia- 83 (133)
.|.+.. .+-|.+|+- ++.+....+.++.++++.+.+||...|.+|++++ +|+.+|+.+++| .+-||.=...+
T Consensus 178 ~Lr~~~--~vPIA~DEs-~~~~~d~~~l~~~~a~dvi~ik~~~~GGit~~lk---iA~~~gi~v~v~-s~~es~ig~aA~ 250 (327)
T PRK02901 178 ELRRRV--GVPIAADES-IRRAEDPLRVARAGAADVAVLKVAPLGGVRAALD---IAEQIGLPVVVS-SALDTSVGIAAG 250 (327)
T ss_pred HHHHhC--CCCEEeCCC-CCCHHHHHHHHHcCCCCEEEeCcchhCCHHHHHH---HHHHcCCcEEEe-CCcccHHHHHHH
Confidence 344543 466788875 4457788888999999999999999999998776 688999999999 44465433334
Q ss_pred -hhhhhh
Q psy12654 84 -DLVVGL 89 (133)
Q Consensus 84 -dLAVgl 89 (133)
++|.++
T Consensus 251 lhlaaal 257 (327)
T PRK02901 251 LALAAAL 257 (327)
T ss_pred HHHHHhC
Confidence 444443
No 35
>PRK15129 L-Ala-D/L-Glu epimerase; Provisional
Probab=94.33 E-value=0.1 Score=43.40 Aligned_cols=59 Identities=19% Similarity=0.355 Sum_probs=50.9
Q ss_pred CCeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecC
Q psy12654 12 EPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHR 73 (133)
Q Consensus 12 ~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~r 73 (133)
.++.|..|+-. .++..+.+. .++++.+.+||...|-+|++++.+++|+.+|+.++++.-
T Consensus 218 ~~~pia~dEs~-~~~~d~~~~--~~~~d~v~~k~~~~GGi~~a~~i~~~a~~~gi~~~~g~~ 276 (321)
T PRK15129 218 HPLPICADESC-HTRSSLKAL--KGRYEMVNIKLDKTGGLTEALALATEARAQGFALMLGCM 276 (321)
T ss_pred cCCCEecCCCC-CCHHHHHHH--HhhCCEEEeCchhhCCHHHHHHHHHHHHHcCCcEEEecc
Confidence 36888998864 457777776 378999999999999999999999999999999999774
No 36
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=94.02 E-value=0.12 Score=43.54 Aligned_cols=79 Identities=19% Similarity=0.226 Sum_probs=61.4
Q ss_pred hhhhhcCCCeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHh
Q psy12654 5 QLNDFAPEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIAD 84 (133)
Q Consensus 5 ~~~~~~~~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iad 84 (133)
.|.+.....+-|.+|.- +.++....+.++.++++.+-+|+...|-+|++++.+.+|+.+|+.++. |.. ...-.|
T Consensus 227 ~l~~~~~~~iPIa~gE~-~~~~~~~~~li~~~a~div~~d~~~~GGit~~~~ia~~A~a~gi~~~~-h~~----~~a~~h 300 (352)
T cd03328 227 LVRERGPAGMDIAAGEY-AYTLAYFRRLLEAHAVDVLQADVTRCGGVTGFLQAAALAAAHHVDLSA-HCA----PALHAH 300 (352)
T ss_pred HHHhhCCCCCCEEeccc-ccCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeecc-Cch----HHHHHH
Confidence 34454334578888886 446999999999999999999999999999999999999999998887 432 123346
Q ss_pred hhhhh
Q psy12654 85 LVVGL 89 (133)
Q Consensus 85 LAVgl 89 (133)
++.++
T Consensus 301 l~aa~ 305 (352)
T cd03328 301 VACAV 305 (352)
T ss_pred HHHhC
Confidence 65544
No 37
>PRK05105 O-succinylbenzoate synthase; Provisional
Probab=92.39 E-value=0.37 Score=40.32 Aligned_cols=73 Identities=21% Similarity=0.213 Sum_probs=54.1
Q ss_pred CeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchh--HHhhhhhh
Q psy12654 13 PIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNF--IADLVVGL 89 (133)
Q Consensus 13 ~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~--iadLAVgl 89 (133)
.+-|..|+-..+ ++ ....+ .+.+..+.|||..+|-++++++.+.+|+.+|+.++++ ...|+.=.. .+|++-.+
T Consensus 209 ~~PIa~DEs~~~-~~-~~~~~-~~~~d~i~ik~~k~GGi~~a~~i~~~A~~~gi~~~~~-~~~es~i~~aa~~hla~~~ 283 (322)
T PRK05105 209 GIAIAWDESLRE-PD-FQFEA-EPGVRAIVIKPTLTGSLEKCQELIEQAHALGLRAVIS-SSIESSLGLTQLARLAAWL 283 (322)
T ss_pred CCCEEECCCCCc-hh-hhhhh-cCCCCEEEECccccCCHHHHHHHHHHHHHcCCcEEEE-CchhHHHHHHHHHHHHHhc
Confidence 567788886654 54 23323 6678999999999999999999999999999999998 444663222 34555555
No 38
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=91.36 E-value=0.6 Score=40.47 Aligned_cols=67 Identities=22% Similarity=0.269 Sum_probs=54.7
Q ss_pred hhhhhcCCCeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecC
Q psy12654 5 QLNDFAPEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHR 73 (133)
Q Consensus 5 ~~~~~~~~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~r 73 (133)
.|.+.....|-|.+|.-. ..+...++.++.++++-+-+|+...|-+|++++.+.+|+.+|..+ +.|.
T Consensus 253 ~L~~~~~~~i~ia~gE~~-~~~~~~~~li~~~a~Divq~d~~~~GGit~~~kia~lA~a~gi~~-~pH~ 319 (394)
T PRK15440 253 ELKRNAPAGMMVTSGEHE-ATLQGFRTLLEMGCIDIIQPDVGWCGGLTELVKIAALAKARGQLV-VPHG 319 (394)
T ss_pred HHHHhCCCCCceecCCCc-cCHHHHHHHHHcCCCCEEeCCccccCCHHHHHHHHHHHHHcCCee-cccC
Confidence 455555445777776653 457789999999999999999999999999999999999999984 5564
No 39
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=91.24 E-value=0.64 Score=38.80 Aligned_cols=79 Identities=20% Similarity=0.119 Sum_probs=58.5
Q ss_pred hhhhhcCCCeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCch--hH
Q psy12654 5 QLNDFAPEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDN--FI 82 (133)
Q Consensus 5 ~~~~~~~~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~--~i 82 (133)
.|.+. ..+-|..|.. +.++..+.+.++.+++..+.+||...|-+++.+ ++|+.+|+.++++.. .||.=. ..
T Consensus 211 ~l~~~--~~~Pia~DEs-~~~~~d~~~~~~~~a~d~v~ik~~k~GGi~~~~---~~a~~~gi~~~~~~~-~es~ig~aa~ 283 (320)
T PRK02714 211 QLSQD--YQTPIALDES-VANLAQLQQCYQQGWRGIFVIKPAIAGSPSRLR---QFCQQHPLDAVFSSV-FETAIGRKAA 283 (320)
T ss_pred HHHHh--CCCCEEECCc-cCCHHHHHHHHHcCCCCEEEEcchhcCCHHHHH---HHHHHhCCCEEEEec-hhhHHHHHHH
Confidence 34443 3567888886 566888999999999999999999999999765 678889999999854 355322 23
Q ss_pred Hhhhhhhc
Q psy12654 83 ADLVVGLS 90 (133)
Q Consensus 83 adLAVgl~ 90 (133)
+|||..+.
T Consensus 284 ~hlaa~~~ 291 (320)
T PRK02714 284 LALAAELS 291 (320)
T ss_pred HHHHHhCC
Confidence 46655554
No 40
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=91.07 E-value=0.59 Score=40.29 Aligned_cols=66 Identities=12% Similarity=0.161 Sum_probs=55.0
Q ss_pred hhhhhcCCCeEEecCcccccCHHHHHHHHhhccc----ccceehccccccHHHHHHHHHHHHHCCCc--EEeecC
Q psy12654 5 QLNDFAPEPIQIVGDDLTVTNPKRIATAVEKKAC----NCLLLKVNQIGSVTESIQAHLLAKQNGWG--TMVSHR 73 (133)
Q Consensus 5 ~~~~~~~~~iqivGDDl~vTn~~ri~~~i~~~~~----na~llK~nQigTvTe~lea~~~a~~~g~~--~vvS~r 73 (133)
.|.+. ..+.|.+|+- +.++....+.++.+++ +.+-+|+...|=+|++++.+.+|+.+|+. .++.|.
T Consensus 250 ~L~~~--~~iPIa~gEs-~~~~~~~~~li~~~a~~~~~div~~d~~~~GGit~~~kia~lA~a~gi~~~~~~pH~ 321 (385)
T cd03326 250 ELADH--YDGPIATGEN-LFSLQDARNLLRYGGMRPDRDVLQFDPGLSYGLPEYLRMLDVLEAHGWSRRRFFPHG 321 (385)
T ss_pred HHHhh--CCCCEEcCCC-cCCHHHHHHHHHhCCccccCCEEEeCchhhCCHHHHHHHHHHHHHcCCCCceeecch
Confidence 34444 3577888886 4558899999999988 99999999999999999999999999997 366675
No 41
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=89.33 E-value=1 Score=39.26 Aligned_cols=57 Identities=18% Similarity=0.267 Sum_probs=50.5
Q ss_pred CeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEe
Q psy12654 13 PIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMV 70 (133)
Q Consensus 13 ~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vv 70 (133)
.+-|.+|+-. .++...++.++.++++.+-+||...|=+|++++.+.+|+.+|+.++.
T Consensus 294 ~iPIa~gEs~-~~~~~~~~ll~~~a~dil~~d~~~~GGit~~~kia~lA~a~gi~~~p 350 (415)
T cd03324 294 PIGVATGEHC-QNRVVFKQLLQAGAIDVVQIDSCRLGGVNENLAVLLMAAKFGVPVCP 350 (415)
T ss_pred CCceecCCcc-CCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEE
Confidence 4778888764 45888899999999999999999999999999999999999997655
No 42
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=88.28 E-value=1.1 Score=37.80 Aligned_cols=59 Identities=22% Similarity=0.350 Sum_probs=50.8
Q ss_pred eEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCC
Q psy12654 14 IQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSG 75 (133)
Q Consensus 14 iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsG 75 (133)
+-|..|.- +.+...+++.++.++++.+-+|+...|-+||++..+.+|+ ++.++++-..+
T Consensus 240 ~PIa~gEs-~~~~~~~~~l~~~~a~div~~d~~~~GGite~~kia~~A~--~~~~~v~~h~~ 298 (372)
T COG4948 240 TPIAAGES-VYTRWDFRRLLEAGAVDIVQPDLARVGGITEALKIAALAE--GFGVMVGPHVE 298 (372)
T ss_pred CCEecCcc-cccHHHHHHHHHcCCCCeecCCccccCCHHHHHHHHHHHH--HhCCceeccCc
Confidence 77888765 5668899999999999999999999999999999999999 66666665554
No 43
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=86.70 E-value=1.7 Score=44.13 Aligned_cols=81 Identities=11% Similarity=0.095 Sum_probs=57.1
Q ss_pred hhhhhcCCCeEEecCcccccCH----HHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCch
Q psy12654 5 QLNDFAPEPIQIVGDDLTVTNP----KRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDN 80 (133)
Q Consensus 5 ~~~~~~~~~iqivGDDl~vTn~----~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~ 80 (133)
.+.++ ..+.|..|+-..+-. ..+...++..++ .+.+||...|-++++.+.+++|+.+|..+++++ .-|+.=.
T Consensus 1179 ~l~~~--~~iPIA~DEs~~~~~~~~~~~~~~~i~~~~~-~i~iK~~~~GGit~~~~ia~~A~~~gi~~~~~s-~~es~Ig 1254 (1655)
T PLN02980 1179 KFCEE--TGLPVALDETIDKFEECPLRMLTKYTHPGIV-AVVIKPSVVGGFENAALIARWAQQHGKMAVISA-AYESGLG 1254 (1655)
T ss_pred HHHHh--CCCCEEeCCCcCCcccchHHHHHHHHHCCCe-EEEeChhhhCCHHHHHHHHHHHHHcCCeEEecC-cccCHHH
Confidence 34444 356778888755422 356666666655 899999999999999999999999999999983 3455322
Q ss_pred --hHHhhhhhh
Q psy12654 81 --FIADLVVGL 89 (133)
Q Consensus 81 --~iadLAVgl 89 (133)
..++||-.+
T Consensus 1255 ~aA~~hlaa~~ 1265 (1655)
T PLN02980 1255 LSAYIQFASYL 1265 (1655)
T ss_pred HHHHHHHHHhc
Confidence 233555443
No 44
>COG3799 Mal Methylaspartate ammonia-lyase [Amino acid transport and metabolism]
Probab=86.03 E-value=1.7 Score=37.91 Aligned_cols=87 Identities=16% Similarity=0.251 Sum_probs=74.4
Q ss_pred hhcCCCeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCch--hHHhh
Q psy12654 8 DFAPEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDN--FIADL 85 (133)
Q Consensus 8 ~~~~~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~--~iadL 85 (133)
.+.|..+-||.|+ +|..-+.|....+.++|.-+-||.--.|++-++..++.+++.+.....+....-||.=+ .-+|.
T Consensus 293 ~~~Gs~v~IVaDE-wCnt~~Di~~F~dA~a~h~VQiKTPDvGsi~~~~rAvlyC~~~~~~AYvGGtCnETdvSAr~cvHV 371 (410)
T COG3799 293 TRLGSGVKIVADE-WCNTYQDIVDFTDAAACHMVQIKTPDVGSIHNIVRAVLYCNSHSMEAYVGGTCNETDVSARTCVHV 371 (410)
T ss_pred hhcCCcceEeehh-hcccHHHHHHHHhhccccEEEecCCCcchHHHHHHHHhhhccCccceeecccccccchhhhhhhhh
Confidence 3468899999975 56668889999999999999999999999999999999999999999999999999543 34588
Q ss_pred hhhhccCcee
Q psy12654 86 VVGLSTGQIK 95 (133)
Q Consensus 86 AVgl~a~~iK 95 (133)
|++..+-++-
T Consensus 372 alAt~a~~mL 381 (410)
T COG3799 372 ALATRAMRML 381 (410)
T ss_pred hhhhcHHHHh
Confidence 8888776653
No 45
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=79.81 E-value=2.4 Score=30.21 Aligned_cols=55 Identities=16% Similarity=0.199 Sum_probs=41.4
Q ss_pred cccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHhhhhhhccC
Q psy12654 38 CNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIADLVVGLSTG 92 (133)
Q Consensus 38 ~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iadLAVgl~a~ 92 (133)
.+-++|=.++-|.-.|.+++++.|++.|..++.=....++.=.-+||..+-+.++
T Consensus 47 ~~dl~I~iS~SG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~~~ 101 (120)
T cd05710 47 EKSVVILASHSGNTKETVAAAKFAKEKGATVIGLTDDEDSPLAKLADYVIVYGFE 101 (120)
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHcCCeEEEEECCCCCcHHHhCCEEEEccCC
Confidence 3567777999999999999999999999887766665555544556665544444
No 46
>COG1441 MenC O-succinylbenzoate synthase [Coenzyme metabolism]
Probab=77.02 E-value=2.9 Score=35.46 Aligned_cols=39 Identities=15% Similarity=0.195 Sum_probs=35.7
Q ss_pred hcccccceehccccccHHHHHHHHHHHHHCCCcEEeecC
Q psy12654 35 KKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHR 73 (133)
Q Consensus 35 ~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~r 73 (133)
+-...+++|||.-+|++...-+.++.|+..|...|+|..
T Consensus 227 e~gv~avVIKPTL~GSl~r~~eli~qAh~lGl~AVISSS 265 (321)
T COG1441 227 EPGVRAVVIKPTLTGSLQRVRELVQQAHALGLTAVISSS 265 (321)
T ss_pred CCCceEEEecccchhhHHHHHHHHHHHHhcCceeEeech
Confidence 446789999999999999999999999999999999975
No 47
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=75.88 E-value=2.7 Score=35.32 Aligned_cols=54 Identities=19% Similarity=0.250 Sum_probs=40.3
Q ss_pred cccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHhhhhhhcc
Q psy12654 38 CNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIADLVVGLST 91 (133)
Q Consensus 38 ~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iadLAVgl~a 91 (133)
-+.++|=.+|-|.-.|++++++.|+++|..+|.=....++.=+-.||..+-+++
T Consensus 92 ~~~lvI~iS~SGeT~e~i~al~~ak~~Ga~~I~IT~~~~S~L~~~ad~~l~~~a 145 (340)
T PRK11382 92 DRCAVIGVSDYGKTEEVIKALELGRACGALTAAFTKRADSPITSAAEFSIDYQA 145 (340)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEECCCCChHHHhCCEEEEeCC
Confidence 456777799999999999999999999987776655555544445566554444
No 48
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=72.89 E-value=4.3 Score=28.23 Aligned_cols=54 Identities=24% Similarity=0.246 Sum_probs=40.8
Q ss_pred cccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHhhhhhhcc
Q psy12654 38 CNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIADLVVGLST 91 (133)
Q Consensus 38 ~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iadLAVgl~a 91 (133)
.+.++|=.++-|.-.|.+++++.|++.|..++.-....++.=.-++|..+-+.+
T Consensus 46 ~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~~ 99 (126)
T cd05008 46 EDTLVIAISQSGETADTLAALRLAKEKGAKTVAITNVVGSTLAREADYVLYLRA 99 (126)
T ss_pred CCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEEEECCCCChHHHhCCEEEEecC
Confidence 456677789999999999999999999998887666655544455666554443
No 49
>PRK12928 lipoyl synthase; Provisional
Probab=72.25 E-value=19 Score=29.98 Aligned_cols=80 Identities=25% Similarity=0.326 Sum_probs=56.2
Q ss_pred ccccccHHHHHHHHHHHHHCC--C----cEEeecCCCCCCchhHHhh--hhhhccCceecCCCCc--hhH--------HH
Q psy12654 45 VNQIGSVTESIQAHLLAKQNG--W----GTMVSHRSGETEDNFIADL--VVGLSTGQIKTGAPCR--SER--------LA 106 (133)
Q Consensus 45 ~nQigTvTe~lea~~~a~~~g--~----~~vvS~rsGETeD~~iadL--AVgl~a~~iK~G~p~r--~Er--------~a 106 (133)
++.-.|..+.+++++.|++.| + ++|+++ |||+++++..| +-.++..++.+|.=.+ -.. =.
T Consensus 181 m~r~~t~e~~le~l~~ak~~gp~i~~~s~iIvG~--GET~ed~~etl~~Lrel~~d~v~i~~Yl~p~~~~~~v~~~~~~~ 258 (290)
T PRK12928 181 VRRGADYQRSLDLLARAKELAPDIPTKSGLMLGL--GETEDEVIETLRDLRAVGCDRLTIGQYLRPSLAHLPVQRYWTPE 258 (290)
T ss_pred hCCCCCHHHHHHHHHHHHHhCCCceecccEEEeC--CCCHHHHHHHHHHHHhcCCCEEEEEcCCCCCccCCceeeccCHH
Confidence 455578999999999999998 4 567777 99999999876 4477778888776332 011 13
Q ss_pred HHHHHHHHHHHhCCcccccC
Q psy12654 107 KYNQILRIEEELGANAKFAG 126 (133)
Q Consensus 107 KyN~LLrIeeelg~~~~~~g 126 (133)
.+-++-++.+++|=.....|
T Consensus 259 ~f~~~~~~~~~~g~~~~~~~ 278 (290)
T PRK12928 259 EFEALGQIARELGFSHVRSG 278 (290)
T ss_pred HHHHHHHHHHHcCCceeEec
Confidence 44455567778886555555
No 50
>PRK05481 lipoyl synthase; Provisional
Probab=71.98 E-value=17 Score=30.19 Aligned_cols=84 Identities=23% Similarity=0.246 Sum_probs=57.1
Q ss_pred ccccccHHHHHHHHHHHHHC--CCc----EEeecCCCCCCchhHHhhhh--hhccCceecCC---CC-------chhHHH
Q psy12654 45 VNQIGSVTESIQAHLLAKQN--GWG----TMVSHRSGETEDNFIADLVV--GLSTGQIKTGA---PC-------RSERLA 106 (133)
Q Consensus 45 ~nQigTvTe~lea~~~a~~~--g~~----~vvS~rsGETeD~~iadLAV--gl~a~~iK~G~---p~-------r~Er~a 106 (133)
.+.-.|..+.+++++.+++. |+. +|+++ |||+++|..+|-. .++..++-++. |+ ....-.
T Consensus 173 m~r~~t~e~~le~i~~ar~~~pgi~~~t~~IvGf--GET~ed~~~tl~~lrel~~d~v~if~Ys~pa~k~~~v~~~~k~~ 250 (289)
T PRK05481 173 VRPGADYERSLELLKRAKELHPGIPTKSGLMVGL--GETDEEVLEVMDDLRAAGVDILTIGQYLQPSRKHLPVERYVTPE 250 (289)
T ss_pred hCCCCCHHHHHHHHHHHHHhCCCCeEeeeeEEEC--CCCHHHHHHHHHHHHhcCCCEEEEEccCCCccccCCCCCcCCHH
Confidence 34445899999999999999 775 56676 9999999998754 33333332221 21 223446
Q ss_pred HHHHHHHHHHHhCCcccccCccCC
Q psy12654 107 KYNQILRIEEELGANAKFAGKNFR 130 (133)
Q Consensus 107 KyN~LLrIeeelg~~~~~~g~~~~ 130 (133)
.+++|+.+..++|=...+.|+--|
T Consensus 251 r~~~l~~~~~~i~~~~~~~~~~~~ 274 (289)
T PRK05481 251 EFDEYKEIALELGFLHVASGPLVR 274 (289)
T ss_pred HHHHHHHHHHHcCchheEecCccc
Confidence 788888899999976666664333
No 51
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=71.37 E-value=13 Score=33.03 Aligned_cols=69 Identities=26% Similarity=0.342 Sum_probs=56.2
Q ss_pred hhhhhcCCCeEEecCcccccCHHHHHHHHhhcccccceehcccc-----ccHHHHHHHHHHHHHCCCcEEeecCCCCC
Q psy12654 5 QLNDFAPEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQI-----GSVTESIQAHLLAKQNGWGTMVSHRSGET 77 (133)
Q Consensus 5 ~~~~~~~~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQi-----gTvTe~lea~~~a~~~g~~~vvS~rsGET 77 (133)
.....+|.++.-||+ .-.|..+..+.+|.++. ++++|++.- +++++. |.++.|+++|.-+++=.-||.-
T Consensus 126 d~~~~aG~~l~EvG~-tn~t~~~d~~~AIne~t--a~llkV~s~~~~f~~~l~~~-~l~~ia~~~~lpvivD~aSg~~ 199 (395)
T COG1921 126 DIIRLAGAKLVEVGT-TNRTHLKDYELAINENT--ALLLKVHSSNYGFTGMLSEE-ELVEIAHEKGLPVIVDLASGAL 199 (395)
T ss_pred HHHHHcCCEEEEecc-cCcCCHHHHHHHhccCC--eeEEEEeeccccccccccHH-HHHHHHHHcCCCEEEecCCccc
Confidence 345668999999997 55578999999999876 566777544 788876 8899999999999999999874
No 52
>TIGR02815 agaS_fam putative sugar isomerase, AgaS family. Some members of this protein family are found in regions associated with N-acetyl-galactosamine and galactosamine untilization and are suggested to be isomerases.
Probab=68.38 E-value=5.3 Score=34.15 Aligned_cols=35 Identities=29% Similarity=0.221 Sum_probs=28.7
Q ss_pred cccceehccccccHHHHHHHHHHHHHC--CCcEEeec
Q psy12654 38 CNCLLLKVNQIGSVTESIQAHLLAKQN--GWGTMVSH 72 (133)
Q Consensus 38 ~na~llK~nQigTvTe~lea~~~a~~~--g~~~vvS~ 72 (133)
-+.++|=++|-|.-+|++++++.|++. |..++.-.
T Consensus 92 ~~~lvi~iSqSGeT~etv~a~~~ak~~~~g~~~i~it 128 (372)
T TIGR02815 92 RPTLLVSFARSGNSPESVAAVELADQLLPECYHLVLT 128 (372)
T ss_pred CCeEEEEEeCCcCcHHHHHHHHHHHHhCCCCcEEEEE
Confidence 358899999999999999999999998 55444433
No 53
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=67.94 E-value=11 Score=28.24 Aligned_cols=67 Identities=21% Similarity=0.235 Sum_probs=49.1
Q ss_pred cCCCeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHhhhh
Q psy12654 10 APEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIADLVV 87 (133)
Q Consensus 10 ~~~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iadLAV 87 (133)
.|..+..++|... ..-..+-++|=.++-|.-.+++++++.|++.|..++.=..+.++.=.-.||..+
T Consensus 58 ~g~~~~~~~~~~~-----------~~~~~~D~vI~iS~sG~t~~~i~~~~~ak~~g~~iI~IT~~~~s~la~~ad~~l 124 (179)
T cd05005 58 LGLNVYVVGETTT-----------PAIGPGDLLIAISGSGETSSVVNAAEKAKKAGAKVVLITSNPDSPLAKLADVVV 124 (179)
T ss_pred CCCeEEEeCCCCC-----------CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEE
Confidence 4667777776431 111345567778999999999999999999999988777776666566677655
No 54
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=67.78 E-value=18 Score=29.51 Aligned_cols=73 Identities=15% Similarity=0.089 Sum_probs=45.8
Q ss_pred cCcccccCHHHHHHHHhhc-ccccc----eehccccccHHHHHHHHHHHHHCCCcEEe-ecCCCCCCchhHHhh-hhhhc
Q psy12654 18 GDDLTVTNPKRIATAVEKK-ACNCL----LLKVNQIGSVTESIQAHLLAKQNGWGTMV-SHRSGETEDNFIADL-VVGLS 90 (133)
Q Consensus 18 GDDl~vTn~~ri~~~i~~~-~~na~----llK~nQigTvTe~lea~~~a~~~g~~~vv-S~rsGETeD~~iadL-AVgl~ 90 (133)
=||...+|....++-.-.. .-|.- =+.-.+.-.+-.++++++.++++|+.+++ |.|+....+.++..| .+|+.
T Consensus 84 IDET~LsN~py~~~~~~g~~~~~~~~~~~wv~~~~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~ 163 (229)
T TIGR01675 84 VDDTLLSNIPYYKKHGYGTEKTDPTAFWLWLGKGAAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFT 163 (229)
T ss_pred cccccccCHHHHHHhccCCCcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCC
Confidence 4677777776555432110 00100 12233555677899999999999997765 999877766677777 44554
No 55
>COG1012 PutA NAD-dependent aldehyde dehydrogenases [Energy production and conversion]
Probab=66.39 E-value=2.5 Score=37.47 Aligned_cols=85 Identities=21% Similarity=0.239 Sum_probs=56.5
Q ss_pred hhcccccceehccccccHHHHHHHHHHHHHCCC----cEEeecCCCCCCchhHHhhhhhhccCceecCCCCchhHHHHHH
Q psy12654 34 EKKACNCLLLKVNQIGSVTESIQAHLLAKQNGW----GTMVSHRSGETEDNFIADLVVGLSTGQIKTGAPCRSERLAKYN 109 (133)
Q Consensus 34 ~~~~~na~llK~nQigTvTe~lea~~~a~~~g~----~~vvS~rsGETeD~~iadLAVgl~a~~iK~G~p~r~Er~aKyN 109 (133)
.--+.|++++||+....+| ++..++++.+.|. --+|...++++.+.++.|--|.. --=+|+..-|.++.+.-
T Consensus 157 ALaaGntVV~KPse~tp~s-a~~l~~~~~~aglP~Gv~nvv~g~~~~~g~~l~~~p~v~~---i~FTGSt~~G~~i~~~A 232 (472)
T COG1012 157 ALAAGNTVVLKPSEQTPLS-ALALAELAAEAGLPAGVLNVVTGGGAEVGDALVAHPDVDA---ISFTGSTAVGRAIAAAA 232 (472)
T ss_pred HHHcCCEEEEECcccCcHH-HHHHHHHHHHhCCCCCeEEEEeCCCchHHHHHhcCCCCCE---EEEECChHHHHHHHHHH
Confidence 3347999999999999999 8899999988875 22444444556666666654432 22358877787776655
Q ss_pred --HHHHHHHHhCCcc
Q psy12654 110 --QILRIEEELGANA 122 (133)
Q Consensus 110 --~LLrIeeelg~~~ 122 (133)
.+-++-=|||.+.
T Consensus 233 a~~~k~~~lELGGk~ 247 (472)
T COG1012 233 AANLKPVTLELGGKS 247 (472)
T ss_pred hhcCCcEEEECCCCC
Confidence 4444444555433
No 56
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=65.14 E-value=13 Score=26.17 Aligned_cols=61 Identities=20% Similarity=0.230 Sum_probs=40.9
Q ss_pred cccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHhhhhhhccCce--ecCCCCchh
Q psy12654 38 CNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIADLVVGLSTGQI--KTGAPCRSE 103 (133)
Q Consensus 38 ~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iadLAVgl~a~~i--K~G~p~r~E 103 (133)
.+.++|=.++-|.-.|.+++++.|++.|..++.=...+ .+++++=..+...+ -.+.+.|..
T Consensus 43 ~~dl~I~iS~SG~t~e~i~~~~~a~~~g~~iI~IT~~~-----~l~~~~~~~~~~~~~~p~~~~~r~s 105 (119)
T cd05017 43 RKTLVIAVSYSGNTEETLSAVEQAKERGAKIVAITSGG-----KLLEMAREHGVPVIIIPKGLQPRAA 105 (119)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEeCCc-----hHHHHHHHcCCcEEECCCCCCCcee
Confidence 45566769999999999999999999998776544322 37776553433333 334444433
No 57
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=65.12 E-value=20 Score=29.46 Aligned_cols=50 Identities=16% Similarity=0.129 Sum_probs=42.1
Q ss_pred cccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCC-cEEeecC
Q psy12654 22 TVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGW-GTMVSHR 73 (133)
Q Consensus 22 ~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~-~~vvS~r 73 (133)
.++|...|..+-. ..-.++||-.|.+|+.|...+++..++.|- .+++-||
T Consensus 118 ~~~n~~LL~~~a~--~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~r 168 (260)
T TIGR01361 118 NMQNFELLKEVGK--QGKPVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCER 168 (260)
T ss_pred cccCHHHHHHHhc--CCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 3578887777543 456899999999999999999999999887 6899998
No 58
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=63.63 E-value=33 Score=28.40 Aligned_cols=64 Identities=20% Similarity=0.154 Sum_probs=47.8
Q ss_pred cccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCC-cEEeecCCC---CCCchhHHhhhh
Q psy12654 22 TVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGW-GTMVSHRSG---ETEDNFIADLVV 87 (133)
Q Consensus 22 ~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~-~~vvS~rsG---ETeD~~iadLAV 87 (133)
.++|...++.+ -+..-.++||=.+.+|+.|.+.+++..+..|- .+++-||.+ +.-.....|+++
T Consensus 120 ~~~n~~LL~~~--a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~ 187 (266)
T PRK13398 120 NMQNFELLKEV--GKTKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDLAA 187 (266)
T ss_pred cccCHHHHHHH--hcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHHHH
Confidence 35777777775 24567899999999999999999999998877 689999954 333334455544
No 59
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=62.45 E-value=30 Score=23.62 Aligned_cols=50 Identities=20% Similarity=0.278 Sum_probs=36.9
Q ss_pred ccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHhhh
Q psy12654 37 ACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIADLV 86 (133)
Q Consensus 37 ~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iadLA 86 (133)
..+.++|=.++-|.-.+.+++++.++++|..+++=....++.=.-.+|..
T Consensus 59 ~~~~~~i~iS~~g~~~~~~~~~~~a~~~g~~iv~iT~~~~~~l~~~~d~~ 108 (139)
T cd05013 59 TPGDVVIAISFSGETKETVEAAEIAKERGAKVIAITDSANSPLAKLADIV 108 (139)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEcCCCCChhHHhcCEE
Confidence 45677777899999999999999999999988775555554333344543
No 60
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=61.32 E-value=30 Score=29.75 Aligned_cols=63 Identities=19% Similarity=0.148 Sum_probs=49.2
Q ss_pred ccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCC-cEEeecC---CCCCCchhHHhhhh
Q psy12654 23 VTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGW-GTMVSHR---SGETEDNFIADLVV 87 (133)
Q Consensus 23 vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~-~~vvS~r---sGETeD~~iadLAV 87 (133)
++|...++.+-. ..-.++||-.+.+|+.|.+.+++...+.|- .+++.|| +.++....-.||..
T Consensus 187 ~~N~~LL~~va~--~~kPViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl~a 253 (335)
T PRK08673 187 MQNFDLLKEVGK--TNKPVLLKRGMSATIEEWLMAAEYILAEGNPNVILCERGIRTFETATRNTLDLSA 253 (335)
T ss_pred ccCHHHHHHHHc--CCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhHHH
Confidence 588888887543 455899999999999999999999998876 6999998 44554455566643
No 61
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=60.55 E-value=13 Score=25.50 Aligned_cols=54 Identities=20% Similarity=0.246 Sum_probs=42.3
Q ss_pred ccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHhhhhhhc
Q psy12654 37 ACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIADLVVGLS 90 (133)
Q Consensus 37 ~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iadLAVgl~ 90 (133)
..+.++|=.++-|.-.|.++.++.|++.|..++.=..+.++.-.-.+|...-+.
T Consensus 52 ~~~d~vi~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~ad~~l~~~ 105 (131)
T PF01380_consen 52 DPDDLVIIISYSGETRELIELLRFAKERGAPVILITSNSESPLARLADIVLYIP 105 (131)
T ss_dssp STTEEEEEEESSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEEEEEE
T ss_pred cccceeEeeeccccchhhhhhhHHHHhcCCeEEEEeCCCCCchhhhCCEEEEec
Confidence 455666668899999999999999999999998877777776666666554433
No 62
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=60.34 E-value=12 Score=26.01 Aligned_cols=54 Identities=13% Similarity=0.161 Sum_probs=41.8
Q ss_pred cccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHhhhhhhcc
Q psy12654 38 CNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIADLVVGLST 91 (133)
Q Consensus 38 ~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iadLAVgl~a 91 (133)
-+-++|=.++-|.-.|.+++++.|+++|..++.=....++.=.-.||..+-+..
T Consensus 47 ~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~~ 100 (128)
T cd05014 47 PGDVVIAISNSGETDELLNLLPHLKRRGAPIIAITGNPNSTLAKLSDVVLDLPV 100 (128)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCchhhhCCEEEECCC
Confidence 344556689999999999999999999998888777777665666776654443
No 63
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=60.08 E-value=31 Score=27.55 Aligned_cols=50 Identities=18% Similarity=-0.021 Sum_probs=40.6
Q ss_pred cccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHhhhh
Q psy12654 38 CNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIADLVV 87 (133)
Q Consensus 38 ~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iadLAV 87 (133)
.+-++|=.+.-|.-.+.+++++.|+++|..+++=....++.=.-+||..+
T Consensus 175 ~~Dv~I~iS~sg~~~~~~~~~~~ak~~ga~iI~IT~~~~s~la~~ad~~l 224 (278)
T PRK11557 175 PDDLLLAISYSGERRELNLAADEALRVGAKVLAITGFTPNALQQRASHCL 224 (278)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHcCCCEEEEcCCCCCchHHhCCEEE
Confidence 44566667999999999999999999999999888776666566777655
No 64
>PRK05660 HemN family oxidoreductase; Provisional
Probab=58.71 E-value=17 Score=31.11 Aligned_cols=55 Identities=18% Similarity=0.283 Sum_probs=42.9
Q ss_pred ceehccccccHHHHHHHHHHHHHCCCcE----EeecCCCCCCchhHHhh--hhhhccCcee
Q psy12654 41 LLLKVNQIGSVTESIQAHLLAKQNGWGT----MVSHRSGETEDNFIADL--VVGLSTGQIK 95 (133)
Q Consensus 41 ~llK~nQigTvTe~lea~~~a~~~g~~~----vvS~rsGETeD~~iadL--AVgl~a~~iK 95 (133)
++=+.+...|..+++++++.+++.|+.. ++-.-.|+|.+++..++ ++.++..+|.
T Consensus 132 ~L~~l~r~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpgqt~~~~~~~l~~~~~l~p~~is 192 (378)
T PRK05660 132 KLKRLGRIHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQSLEEALDDLRQAIALNPPHLS 192 (378)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHhcCCCeEE
Confidence 3445567789999999999999999953 56677899999999877 6666666663
No 65
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=57.02 E-value=12 Score=33.82 Aligned_cols=57 Identities=21% Similarity=0.212 Sum_probs=41.7
Q ss_pred ccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHhhhhhhccCc
Q psy12654 37 ACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIADLVVGLSTGQ 93 (133)
Q Consensus 37 ~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iadLAVgl~a~~ 93 (133)
..+.++|=.+|-|.-.|++++++.|++.|..++.=....++.=.-.||..+-+.++.
T Consensus 335 ~~~dlvI~iS~SG~T~e~i~a~~~ak~~ga~~IaIT~~~~S~La~~aD~~l~~~~~~ 391 (604)
T PRK00331 335 SPKTLVIAISQSGETADTLAALRLAKELGAKTLAICNVPGSTIARESDAVLYTHAGP 391 (604)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHCCCCEEEEECCCCChhHHhcCcEEEecCcC
Confidence 356778889999999999999999999998777666555554444556555544443
No 66
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=55.23 E-value=15 Score=27.26 Aligned_cols=51 Identities=20% Similarity=0.184 Sum_probs=38.5
Q ss_pred cccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHhhhhh
Q psy12654 38 CNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIADLVVG 88 (133)
Q Consensus 38 ~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iadLAVg 88 (133)
-+-++|=.++-|.-.+.+++++.|+++|..++.=....++.=.-.+|..+-
T Consensus 79 ~~D~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~~~ad~~l~ 129 (154)
T TIGR00441 79 KGDVLLGISTSGNSKNVLKAIEAAKDKGMKTITLAGKDGGKMAGLADIELR 129 (154)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEE
Confidence 345666689999999999999999999998887777655544445565443
No 67
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=54.87 E-value=95 Score=26.20 Aligned_cols=52 Identities=15% Similarity=0.337 Sum_probs=40.5
Q ss_pred hccccccHHHHHHHHHHHHHCCCc-E---EeecCCCCCCchhHHhh--hhhhccCcee
Q psy12654 44 KVNQIGSVTESIQAHLLAKQNGWG-T---MVSHRSGETEDNFIADL--VVGLSTGQIK 95 (133)
Q Consensus 44 K~nQigTvTe~lea~~~a~~~g~~-~---vvS~rsGETeD~~iadL--AVgl~a~~iK 95 (133)
..+...|..+++++++.+++.|+. + ++-.-.|||.+++..++ +..++..+|.
T Consensus 136 ~l~R~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPgqt~~~~~~tl~~~~~l~~~~i~ 193 (375)
T PRK05628 136 VLDRTHTPGRAVAAAREARAAGFEHVNLDLIYGTPGESDDDWRASLDAALEAGVDHVS 193 (375)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeccCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 346677899999999999999987 4 33455899999999876 6667766664
No 68
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=54.65 E-value=18 Score=30.48 Aligned_cols=56 Identities=23% Similarity=0.182 Sum_probs=42.2
Q ss_pred hccccccHHHHHHHHHHHHHC--C----CcEEeecCCCCCCchhHHhh--hhhhccCceecCCCCc
Q psy12654 44 KVNQIGSVTESIQAHLLAKQN--G----WGTMVSHRSGETEDNFIADL--VVGLSTGQIKTGAPCR 101 (133)
Q Consensus 44 K~nQigTvTe~lea~~~a~~~--g----~~~vvS~rsGETeD~~iadL--AVgl~a~~iK~G~p~r 101 (133)
+++.-.+..+.+++++.+++. | -++||++ |||+++++..+ .-.++..++=+|---|
T Consensus 183 ~vrr~~t~e~~Le~l~~ak~~~pgi~~~TgiIVGl--GETeee~~etl~~Lrelg~d~v~igqYl~ 246 (302)
T TIGR00510 183 FVRPGATYRWSLKLLERAKEYLPNLPTKSGIMVGL--GETNEEIKQTLKDLRDHGVTMVTLGQYLR 246 (302)
T ss_pred HhCCCCCHHHHHHHHHHHHHhCCCCeecceEEEEC--CCCHHHHHHHHHHHHhcCCCEEEeecccC
Confidence 345567888999999999998 3 4678888 99999998865 4467777776665333
No 69
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=54.47 E-value=13 Score=30.56 Aligned_cols=56 Identities=11% Similarity=0.061 Sum_probs=46.0
Q ss_pred cccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHhhhhhhccCc
Q psy12654 38 CNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIADLVVGLSTGQ 93 (133)
Q Consensus 38 ~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iadLAVgl~a~~ 93 (133)
-+.++|=.++-|.-.+.+++++.|+++|..++.=..+.+++=.-.||..+-+.++.
T Consensus 94 ~~d~~I~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~la~~ad~~l~~~~~~ 149 (326)
T PRK10892 94 PQDVVIAISNSGESSEILALIPVLKRLHVPLICITGRPESSMARAADIHLCVKVPK 149 (326)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCCcccccCCEEEEeCCCc
Confidence 34577779999999999999999999999988888877776666788877665544
No 70
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=54.43 E-value=59 Score=22.21 Aligned_cols=39 Identities=15% Similarity=0.195 Sum_probs=25.9
Q ss_pred cccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCC
Q psy12654 38 CNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGET 77 (133)
Q Consensus 38 ~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGET 77 (133)
++.+++=.+.+ +=.-+..+-+.|++.|..++.++.+|-+
T Consensus 49 aD~VIv~t~~v-sH~~~~~vk~~akk~~ip~~~~~~~~~~ 87 (97)
T PF10087_consen 49 ADLVIVFTDYV-SHNAMWKVKKAAKKYGIPIIYSRSRGVS 87 (97)
T ss_pred CCEEEEEeCCc-ChHHHHHHHHHHHHcCCcEEEECCCCHH
Confidence 45555533333 3344667788899999999999865544
No 71
>PRK06852 aldolase; Validated
Probab=54.43 E-value=70 Score=27.31 Aligned_cols=71 Identities=20% Similarity=0.219 Sum_probs=49.2
Q ss_pred HHHHHhhcc-----cccceehccc-----cccHHHHHHHHHHHHHCCCcEEe-ecCCCCC-Cc----hhHH---hhhhhh
Q psy12654 29 IATAVEKKA-----CNCLLLKVNQ-----IGSVTESIQAHLLAKQNGWGTMV-SHRSGET-ED----NFIA---DLVVGL 89 (133)
Q Consensus 29 i~~~i~~~~-----~na~llK~nQ-----igTvTe~lea~~~a~~~g~~~vv-S~rsGET-eD----~~ia---dLAVgl 89 (133)
++.+++-++ |.|+.+-+|- --.+.+.-++++.|++.|+-+|+ ...-|+- .| ++|+ .+|+-|
T Consensus 121 VeeAvrlG~~~~~~AdAV~v~v~~Gs~~E~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaEL 200 (304)
T PRK06852 121 VEQVVEFKENSGLNILGVGYTIYLGSEYESEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACL 200 (304)
T ss_pred HHHHHhcCCccCCCceEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHH
Confidence 556776553 5677665543 33677788888999999999876 4444432 22 4565 568899
Q ss_pred ccCceecCCC
Q psy12654 90 STGQIKTGAP 99 (133)
Q Consensus 90 ~a~~iK~G~p 99 (133)
||..||+--|
T Consensus 201 GADIVKv~y~ 210 (304)
T PRK06852 201 GADFVKVNYP 210 (304)
T ss_pred cCCEEEecCC
Confidence 9999999877
No 72
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=54.31 E-value=13 Score=34.63 Aligned_cols=53 Identities=15% Similarity=0.114 Sum_probs=38.2
Q ss_pred ccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHhhhhhh
Q psy12654 37 ACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIADLVVGL 89 (133)
Q Consensus 37 ~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iadLAVgl 89 (133)
..+.++|=.+|-|.-.+++++++.|+++|..++.=....++.=.-.||..+-+
T Consensus 400 ~~~dlvI~ISqSGeT~dtl~Al~~Ak~~Ga~tIaITn~~~S~La~~AD~~l~~ 452 (670)
T PTZ00394 400 QRDDVCFFVSQSGETADTLMALQLCKEAGAMCVGITNVVGSSISRLTHYAIHL 452 (670)
T ss_pred CCCCEEEEEECCcCcHHHHHHHHHHHHCCCcEEEEECCCCCHHHHhcCeEEEe
Confidence 35678888999999999999999999999876665544444333444544443
No 73
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=52.88 E-value=25 Score=29.58 Aligned_cols=51 Identities=14% Similarity=0.065 Sum_probs=40.1
Q ss_pred cccccHHHHHHHHHHHHHCCCc-EE---eecCCCCCCchhHHhh--hhhhccCceec
Q psy12654 46 NQIGSVTESIQAHLLAKQNGWG-TM---VSHRSGETEDNFIADL--VVGLSTGQIKT 96 (133)
Q Consensus 46 nQigTvTe~lea~~~a~~~g~~-~v---vS~rsGETeD~~iadL--AVgl~a~~iK~ 96 (133)
+...|..+++++++.+++.|+. +- +-.-.|+|.+++..++ ++.++...|.+
T Consensus 130 gR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~~~~~~~l~~~~~l~~~~is~ 186 (360)
T TIGR00539 130 GRQHSAKNIAPAIETALKSGIENISLDLMYGLPLQTLNSLKEELKLAKELPINHLSA 186 (360)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCCCHHHHHHHHHHHHccCCCEEEe
Confidence 5567899999999999999985 32 4556799999998866 66777777754
No 74
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=52.72 E-value=20 Score=22.89 Aligned_cols=34 Identities=18% Similarity=0.198 Sum_probs=28.1
Q ss_pred ccccceehccccccHHHHHHHHHHHHHCCCcEEe
Q psy12654 37 ACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMV 70 (133)
Q Consensus 37 ~~na~llK~nQigTvTe~lea~~~a~~~g~~~vv 70 (133)
..+-++|=.++-|.-.|.+++++.++++|..++.
T Consensus 46 ~~~d~~i~iS~sg~t~~~~~~~~~a~~~g~~ii~ 79 (87)
T cd04795 46 RKGDVVIALSYSGRTEELLAALEIAKELGIPVIA 79 (87)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHcCCeEEE
Confidence 3456666689999999999999999999987764
No 75
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=52.69 E-value=72 Score=21.76 Aligned_cols=62 Identities=13% Similarity=0.195 Sum_probs=46.8
Q ss_pred cCCCeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHC--CCcEEeecCC
Q psy12654 10 APEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQN--GWGTMVSHRS 74 (133)
Q Consensus 10 ~~~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~--g~~~vvS~rs 74 (133)
.|..+.+++-+. +++.+.+.+.+.....+.+......+...+.+.++.+|+. +..+++....
T Consensus 27 ~G~~v~~~d~~~---~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~ 90 (121)
T PF02310_consen 27 AGHEVDILDANV---PPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPH 90 (121)
T ss_dssp TTBEEEEEESSB----HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESS
T ss_pred CCCeEEEECCCC---CHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCc
Confidence 477888886655 3477777777778888888887888888889999988887 5566666653
No 76
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=52.54 E-value=27 Score=29.34 Aligned_cols=69 Identities=16% Similarity=0.192 Sum_probs=53.8
Q ss_pred cCCCeEEecCcccccC--HHHHHHHHhhcccccceeh-ccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCc
Q psy12654 10 APEPIQIVGDDLTVTN--PKRIATAVEKKACNCLLLK-VNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETED 79 (133)
Q Consensus 10 ~~~~iqivGDDl~vTn--~~ri~~~i~~~~~na~llK-~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD 79 (133)
.| ++.||.|..+-.+ .+++.+.+++...+..+.. ..+-.++.+.-++++.+++.+...||+=-.|-+-|
T Consensus 21 ~g-r~lvVt~~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D 92 (366)
T PF00465_consen 21 LG-RVLVVTDPSLSKSGLVDRVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQARKFGADCIIAIGGGSVMD 92 (366)
T ss_dssp TT-EEEEEEEHHHHHHTHHHHHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHHHHTTSSEEEEEESHHHHH
T ss_pred cC-CEEEEECchHHhCccHHHHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCc
Confidence 35 8889998844443 4788888888888887776 78888999999999999999999888876665443
No 77
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=52.23 E-value=40 Score=30.41 Aligned_cols=57 Identities=19% Similarity=0.158 Sum_probs=41.6
Q ss_pred ccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHhhhhhhccCc
Q psy12654 37 ACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIADLVVGLSTGQ 93 (133)
Q Consensus 37 ~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iadLAVgl~a~~ 93 (133)
..+.++|=.+|-|.-.|++++++.|+++|..++.=....++.=.-.||..+-+.++.
T Consensus 337 ~~~dlvI~iS~SG~T~e~v~a~~~ak~~ga~~IaIT~~~~S~La~~ad~~l~~~~~~ 393 (607)
T TIGR01135 337 DKDTLVIAISQSGETADTLAALRLAKELGAKTLGICNVPGSTLVRESDHTLYTRAGP 393 (607)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEEEECCCCChHHhhcCceEEecCCC
Confidence 346778889999999999999999999997766655555554444566655555443
No 78
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=51.23 E-value=65 Score=26.34 Aligned_cols=75 Identities=16% Similarity=0.142 Sum_probs=55.2
Q ss_pred hcCCCeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHhhhhh
Q psy12654 9 FAPEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIADLVVG 88 (133)
Q Consensus 9 ~~~~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iadLAVg 88 (133)
++|.++..+.|.-.. + .....-.-+-++|=.+.-|.-.|++++++.|+++|..+|.=..+..+.=.-+||..+-
T Consensus 154 ~ig~~~~~~~d~~~~-----~-~~~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT~~~~spla~~Ad~~L~ 227 (281)
T COG1737 154 RIGLNVVALSDTHGQ-----L-MQLALLTPGDVVIAISFSGYTREIVEAAELAKERGAKVIAITDSADSPLAKLADIVLL 227 (281)
T ss_pred HcCCceeEecchHHH-----H-HHHHhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEcCCCCCchhhhhceEEe
Confidence 467788788775422 1 1233334556667689999999999999999999999888877777766777787665
Q ss_pred h
Q psy12654 89 L 89 (133)
Q Consensus 89 l 89 (133)
.
T Consensus 228 ~ 228 (281)
T COG1737 228 V 228 (281)
T ss_pred c
Confidence 4
No 79
>KOG2599|consensus
Probab=51.08 E-value=26 Score=30.15 Aligned_cols=56 Identities=23% Similarity=0.294 Sum_probs=41.3
Q ss_pred EecCc--ccccCHHHHHHHHhhcccc-cceehccc----------cccHHHHHHHHHHHHHCCCcEEeecC
Q psy12654 16 IVGDD--LTVTNPKRIATAVEKKACN-CLLLKVNQ----------IGSVTESIQAHLLAKQNGWGTMVSHR 73 (133)
Q Consensus 16 ivGDD--l~vTn~~ri~~~i~~~~~n-a~llK~nQ----------igTvTe~lea~~~a~~~g~~~vvS~r 73 (133)
|.||. +|| |+.+--.-.+...+ +-+|.||| |-|.-++.++++..++.|...+|-.+
T Consensus 120 VmGDnG~lYV--~eelipvYr~~i~~ladiiTPNqFE~EiLtg~~I~t~eda~~a~~~lhq~~v~~vVITS 188 (308)
T KOG2599|consen 120 VMGDNGRLYV--PEELIPVYRDLIIPLADIITPNQFEAEILTGMEIRTEEDAKRAVEKLHQKGVKTVVITS 188 (308)
T ss_pred cccCCccEec--cHHHHHHHHHhhcchhhhcCCcchhhhhhcCCeeccHHHHHHHHHHHHHhCCCEEEEEe
Confidence 34653 555 55555556666667 89999998 57889999999999999877665443
No 80
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=51.05 E-value=1e+02 Score=23.10 Aligned_cols=80 Identities=16% Similarity=0.119 Sum_probs=46.8
Q ss_pred CeEEecCcccccCHHHH-HHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHhhhhhhcc
Q psy12654 13 PIQIVGDDLTVTNPKRI-ATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIADLVVGLST 91 (133)
Q Consensus 13 ~iqivGDDl~vTn~~ri-~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iadLAVgl~a 91 (133)
++.|++ |+.+.++.+. .+...+-.++.+++ |...+ ....-+.++.++++|..+++.--+-.|..+.+. +...++
T Consensus 53 ~~~i~~-~~~v~~~~~~~~~~~~~aGad~i~~-h~~~~-~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~--~~~~~~ 127 (202)
T cd04726 53 DKIIVA-DLKTADAGALEAEMAFKAGADIVTV-LGAAP-LSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAK--LLKLGV 127 (202)
T ss_pred CCEEEE-EEEeccccHHHHHHHHhcCCCEEEE-EeeCC-HHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHH--HHHCCC
Confidence 455555 5777777532 33344445666665 33322 122345667788899999886333334444443 677788
Q ss_pred CceecC
Q psy12654 92 GQIKTG 97 (133)
Q Consensus 92 ~~iK~G 97 (133)
.+++++
T Consensus 128 d~v~~~ 133 (202)
T cd04726 128 DIVILH 133 (202)
T ss_pred CEEEEc
Confidence 888874
No 81
>PLN03194 putative disease resistance protein; Provisional
Probab=50.65 E-value=14 Score=29.66 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=34.5
Q ss_pred HCCCcEEeecCCCCCCchhHHhhhhhhccCceec----CCCCchhHH
Q psy12654 63 QNGWGTMVSHRSGETEDNFIADLVVGLSTGQIKT----GAPCRSERL 105 (133)
Q Consensus 63 ~~g~~~vvS~rsGETeD~~iadLAVgl~a~~iK~----G~p~r~Er~ 105 (133)
.+.+.+++|+|.-+|.++|+.+|.-+|....|++ ....+|+.+
T Consensus 24 ~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i 70 (187)
T PLN03194 24 AKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKL 70 (187)
T ss_pred CCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcH
Confidence 4679999999999999999999999988877765 234456654
No 82
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=50.09 E-value=24 Score=27.42 Aligned_cols=65 Identities=14% Similarity=0.161 Sum_probs=38.6
Q ss_pred HHHHHhhcccccceehccccccHHHHHHHHHHHHH--CCCcEEeecCCCCCCchhHHhhhhhhccCce
Q psy12654 29 IATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQ--NGWGTMVSHRSGETEDNFIADLVVGLSTGQI 94 (133)
Q Consensus 29 i~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~--~g~~~vvS~rsGETeD~~iadLAVgl~a~~i 94 (133)
-+|.+=-..++++++=|--+||+.|.+++..+.+- +...+++-.-.| --|+++.=+-.-...+|+
T Consensus 88 ~Rk~~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n~~g-~~~~l~~~l~~~~~~gfi 154 (178)
T TIGR00730 88 ERKAMMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFNVNG-HFDGLVEWLKYSIQEGFI 154 (178)
T ss_pred HHHHHHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEECCcc-hHHHHHHHHHHHHHCCCC
Confidence 33334445689999999999999999999987653 233333332211 224444433334444444
No 83
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=49.55 E-value=17 Score=33.20 Aligned_cols=50 Identities=14% Similarity=0.031 Sum_probs=36.2
Q ss_pred cccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHhhhh
Q psy12654 38 CNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIADLVV 87 (133)
Q Consensus 38 ~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iadLAV 87 (133)
.+.++|=++|-|.-.+++++++.|+++|..++.=....++.=+-.||..+
T Consensus 369 ~~~lvI~ISqSGeT~d~i~al~~ak~~Ga~~IaITn~~~S~La~~ad~~l 418 (640)
T PTZ00295 369 EDAGVIFISQSGETLDVVRALNLADELNLPKISVVNTVGSLIARSTDCGV 418 (640)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCCCCEEEEECCCCChhHHhcCEEE
Confidence 46677879999999999999999999997766544444443334444443
No 84
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=49.37 E-value=26 Score=29.65 Aligned_cols=73 Identities=12% Similarity=0.056 Sum_probs=48.9
Q ss_pred cCcccccCHHHHHHHHhhc---ccccce---ehccccccHHHHHHHHHHHHHCCCcEEe-ecCCCCCCchhHHhh-hhhh
Q psy12654 18 GDDLTVTNPKRIATAVEKK---ACNCLL---LKVNQIGSVTESIQAHLLAKQNGWGTMV-SHRSGETEDNFIADL-VVGL 89 (133)
Q Consensus 18 GDDl~vTn~~ri~~~i~~~---~~na~l---lK~nQigTvTe~lea~~~a~~~g~~~vv-S~rsGETeD~~iadL-AVgl 89 (133)
=||...+|....++-.-.. ...+.- +.-.+..-+-.+++..+.+++.|+.+++ |.|+.+..+.++..| ..|.
T Consensus 108 IDET~LsN~pY~~~~~~g~e~~~~~~w~~~Wv~~~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy 187 (275)
T TIGR01680 108 IDGTALSNIPYYKKHGYGSEKFDSELYDEEFVNKGEAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGY 187 (275)
T ss_pred CccccccCHHHHHHhcCCCCcCChhhhhHHHHhcccCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCC
Confidence 3667777877776533110 001111 2233555677899999999999997765 999988888899888 4466
Q ss_pred c
Q psy12654 90 S 90 (133)
Q Consensus 90 ~ 90 (133)
.
T Consensus 188 ~ 188 (275)
T TIGR01680 188 H 188 (275)
T ss_pred C
Confidence 3
No 85
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=49.09 E-value=47 Score=22.41 Aligned_cols=66 Identities=15% Similarity=0.275 Sum_probs=45.9
Q ss_pred eEEecCcccccCHHHHHHHHhh----cccccceehccccc---c--HHHHHHHHHHHHHCCCcEEeecCCCCCCch
Q psy12654 14 IQIVGDDLTVTNPKRIATAVEK----KACNCLLLKVNQIG---S--VTESIQAHLLAKQNGWGTMVSHRSGETEDN 80 (133)
Q Consensus 14 iqivGDDl~vTn~~ri~~~i~~----~~~na~llK~nQig---T--vTe~lea~~~a~~~g~~~vvS~rsGETeD~ 80 (133)
+.+-| +|+..|.+.+++.+.+ ..+..++|..+.+. + +.-.++.++.++++|..+++++.++.....
T Consensus 12 i~l~G-~L~f~~~~~~~~~l~~~~~~~~~~~vilDls~v~~iDssgi~~L~~~~~~~~~~g~~l~l~~~~~~v~~~ 86 (106)
T TIGR02886 12 VRLSG-ELDHHTAERVRRKIDDAIERRPIKHLILNLKNVTFMDSSGLGVILGRYKKIKNEGGEVIVCNVSPAVKRL 86 (106)
T ss_pred EEEec-ccchhhHHHHHHHHHHHHHhCCCCEEEEECCCCcEecchHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 45556 5888888888876644 34677888555443 2 334556788899999999999987665543
No 86
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=48.76 E-value=86 Score=27.25 Aligned_cols=75 Identities=19% Similarity=0.262 Sum_probs=47.4
Q ss_pred hccccccHHHHHHHHHHHHHC--CCcE---EeecCCCCCCchhHHhh--hhhhccCceec-------CCC--------Cc
Q psy12654 44 KVNQIGSVTESIQAHLLAKQN--GWGT---MVSHRSGETEDNFIADL--VVGLSTGQIKT-------GAP--------CR 101 (133)
Q Consensus 44 K~nQigTvTe~lea~~~a~~~--g~~~---vvS~rsGETeD~~iadL--AVgl~a~~iK~-------G~p--------~r 101 (133)
+.|.-.|+.+.+++++.+++. |+.+ ++-.-.|||+++|...+ +-.++..++-. |.| ..
T Consensus 272 ~m~R~~t~~~~~~~v~~lr~~~~gi~i~~d~IvG~PgET~ed~~~tl~~l~~l~~~~i~~f~~sp~pGT~~~~~~~~~~~ 351 (437)
T PRK14331 272 LMDRGYTKEEYLEKIELLKEYIPDITFSTDIIVGFPTETEEDFEETLDVLKKVEFEQVFSFKYSPRPGTPAAYMEGQEPD 351 (437)
T ss_pred HcCCCCCHHHHHHHHHHHHHhCCCCEEecCEEEECCCCCHHHHHHHHHHHHhcCcceeeeeEecCCCCcchhhCCCCCCH
Confidence 445566889999999999998 7765 44455799999997644 33333222111 211 23
Q ss_pred hhHHHHHHHHHHHHHHh
Q psy12654 102 SERLAKYNQILRIEEEL 118 (133)
Q Consensus 102 ~Er~aKyN~LLrIeeel 118 (133)
-+...++.+|.++.+++
T Consensus 352 ~~~~~r~~~l~~~~~~~ 368 (437)
T PRK14331 352 EVKTKRMNRLLELQKEI 368 (437)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44456677777777665
No 87
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=48.69 E-value=23 Score=27.33 Aligned_cols=32 Identities=16% Similarity=0.282 Sum_probs=26.8
Q ss_pred ccccHHHHHHHHHHHHHCCCcEEe----ecCCCCCC
Q psy12654 47 QIGSVTESIQAHLLAKQNGWGTMV----SHRSGETE 78 (133)
Q Consensus 47 QigTvTe~lea~~~a~~~g~~~vv----S~rsGETe 78 (133)
+.||..|..+.++.|+++|+.||+ .|.|.+.+
T Consensus 47 ~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~~~~~ 82 (316)
T PF00128_consen 47 RFGTMEDFKELVDAAHKRGIKVILDVVPNHTSDDHP 82 (316)
T ss_dssp TTBHHHHHHHHHHHHHHTTCEEEEEEETSEEETTSH
T ss_pred ccchhhhhhhhhhccccccceEEEeeeccccccccc
Confidence 789999999999999999999876 46655543
No 88
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=48.58 E-value=22 Score=26.50 Aligned_cols=51 Identities=22% Similarity=0.219 Sum_probs=41.1
Q ss_pred ccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHhhhhhh
Q psy12654 39 NCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIADLVVGL 89 (133)
Q Consensus 39 na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iadLAVgl 89 (133)
+-++|=.++-|.-.+++++++.|+++|..++.=....++.=.-.||..+-+
T Consensus 73 ~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~~ 123 (179)
T TIGR03127 73 GDLLIAISGSGETESLVTVAKKAKEIGATVAAITTNPESTLGKLADVVVEI 123 (179)
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEe
Confidence 455666899999999999999999999998888777777666677775543
No 89
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=48.33 E-value=32 Score=29.64 Aligned_cols=54 Identities=20% Similarity=0.242 Sum_probs=42.3
Q ss_pred eehccccccHHHHHHHHHHHHHCCCc-E---EeecCCCCCCchhHHhh--hhhhccCcee
Q psy12654 42 LLKVNQIGSVTESIQAHLLAKQNGWG-T---MVSHRSGETEDNFIADL--VVGLSTGQIK 95 (133)
Q Consensus 42 llK~nQigTvTe~lea~~~a~~~g~~-~---vvS~rsGETeD~~iadL--AVgl~a~~iK 95 (133)
|-..|..-|..+++++++.+++.|+. + ++-.-.|+|.+++..|+ +..++..+|.
T Consensus 141 L~~l~R~~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgqt~e~~~~tl~~~~~l~p~~is 200 (400)
T PRK07379 141 LALCGRSHRVKDIFAAVDLIHQAGIENFSLDLISGLPHQTLEDWQASLEAAIALNPTHLS 200 (400)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHcCCCCEEE
Confidence 33557888999999999999999987 3 35566799999999877 5566666554
No 90
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=47.69 E-value=31 Score=27.78 Aligned_cols=50 Identities=12% Similarity=0.131 Sum_probs=38.4
Q ss_pred CHHHHHHHHhh-cccccceeh-ccccccHHHHHHHHHHHHHCCCcEEeecCC
Q psy12654 25 NPKRIATAVEK-KACNCLLLK-VNQIGSVTESIQAHLLAKQNGWGTMVSHRS 74 (133)
Q Consensus 25 n~~ri~~~i~~-~~~na~llK-~nQigTvTe~lea~~~a~~~g~~~vvS~rs 74 (133)
+++.+++++++ ....+++|- ||-.|++.+.-+.+++++++|..++|=.-.
T Consensus 141 ~~~~l~~~l~~~~~~k~v~l~~p~~~G~~~dl~~I~~~~~~~g~~livDeA~ 192 (294)
T cd00615 141 PPETFKKALIEHPDAKAAVITNPTYYGICYNLRKIVEEAHHRGLPVLVDEAH 192 (294)
T ss_pred CHHHHHHHHHhCCCceEEEEECCCCCCEecCHHHHHHHHHhcCCeEEEECcc
Confidence 58889998875 345555554 777899999888999999999887775443
No 91
>PLN02428 lipoic acid synthase
Probab=47.48 E-value=86 Score=27.24 Aligned_cols=76 Identities=20% Similarity=0.283 Sum_probs=50.8
Q ss_pred ccHHHHHHHHHHHHHC--CCc----EEeecCCCCCCchhHHhh--hhhhccCceecCCCCchhHH----------HHHHH
Q psy12654 49 GSVTESIQAHLLAKQN--GWG----TMVSHRSGETEDNFIADL--VVGLSTGQIKTGAPCRSERL----------AKYNQ 110 (133)
Q Consensus 49 gTvTe~lea~~~a~~~--g~~----~vvS~rsGETeD~~iadL--AVgl~a~~iK~G~p~r~Er~----------aKyN~ 110 (133)
.+..+.+++++.|++. |+. +|++. |||+++++..+ ...++...+-+|---+-.+. ..+-+
T Consensus 228 ~sye~~Le~L~~ak~~~pGi~tkSg~MvGL--GET~Edv~e~l~~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~ 305 (349)
T PLN02428 228 AGYKQSLDVLKHAKESKPGLLTKTSIMLGL--GETDEEVVQTMEDLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEF 305 (349)
T ss_pred CCHHHHHHHHHHHHHhCCCCeEEEeEEEec--CCCHHHHHHHHHHHHHcCCCEEeeccccCCCcceeeeecccCHHHHHH
Confidence 4778899999999998 664 47888 99999988754 55777666666553222111 44455
Q ss_pred HHHHHHHhCCcccccC
Q psy12654 111 ILRIEEELGANAKFAG 126 (133)
Q Consensus 111 LLrIeeelg~~~~~~g 126 (133)
+=++..++|=.....|
T Consensus 306 ~~~~~~~~gf~~v~sg 321 (349)
T PLN02428 306 WREYGEEMGFRYVASG 321 (349)
T ss_pred HHHHHHHcCCceEEec
Confidence 5556777775444444
No 92
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=47.27 E-value=1.3e+02 Score=23.93 Aligned_cols=72 Identities=17% Similarity=0.096 Sum_probs=42.7
Q ss_pred CCeEEecCcccccCHHHHHHHHhhc-ccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHhhhhhhc
Q psy12654 12 EPIQIVGDDLTVTNPKRIATAVEKK-ACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIADLVVGLS 90 (133)
Q Consensus 12 ~~iqivGDDl~vTn~~ri~~~i~~~-~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iadLAVgl~ 90 (133)
-.+||.|+|. .+.++.+..-. ...-+++|.--. .+.+++++..++.|..+-+..- -+..=|-+|.-.|
T Consensus 54 v~~qv~~~~~----e~~i~~a~~l~~~~~~~~iKIP~T---~~gl~ai~~L~~~gi~v~~T~V----~s~~Qa~~Aa~AG 122 (211)
T cd00956 54 VSAQVVSTDA----EGMVAEARKLASLGGNVVVKIPVT---EDGLKAIKKLSEEGIKTNVTAI----FSAAQALLAAKAG 122 (211)
T ss_pred EEEEEEeCCH----HHHHHHHHHHHHhCCCEEEEEcCc---HhHHHHHHHHHHcCCceeeEEe----cCHHHHHHHHHcC
Confidence 3467888876 55555543322 113477776533 2889999999998876655442 2233344555556
Q ss_pred cCce
Q psy12654 91 TGQI 94 (133)
Q Consensus 91 a~~i 94 (133)
+.+|
T Consensus 123 A~yv 126 (211)
T cd00956 123 ATYV 126 (211)
T ss_pred CCEE
Confidence 6665
No 93
>PRK13937 phosphoheptose isomerase; Provisional
Probab=46.90 E-value=24 Score=27.11 Aligned_cols=50 Identities=14% Similarity=0.121 Sum_probs=37.7
Q ss_pred cccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHhhhh
Q psy12654 38 CNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIADLVV 87 (133)
Q Consensus 38 ~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iadLAV 87 (133)
.+-++|=.++-|.-.+++++++.|+++|..++.=....++.=.-.+|..+
T Consensus 106 ~~Dl~i~iS~sG~t~~~~~~~~~ak~~g~~~I~iT~~~~s~L~~~ad~~l 155 (188)
T PRK13937 106 PGDVLIGISTSGNSPNVLAALEKARELGMKTIGLTGRDGGKMKELCDHLL 155 (188)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEE
Confidence 44566668999999999999999999999888776655554334455544
No 94
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=46.88 E-value=39 Score=28.11 Aligned_cols=49 Identities=16% Similarity=0.331 Sum_probs=35.0
Q ss_pred cccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEe
Q psy12654 20 DLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMV 70 (133)
Q Consensus 20 Dl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vv 70 (133)
+-+.-+|+.+++.+.++. .++++ +|..|..-+.-+..++|+++|+.+|-
T Consensus 97 ~~~~id~~~~~~~i~~~t-~ai~~-~h~~G~~~d~~~i~~~~~~~~i~lIe 145 (363)
T PF01041_consen 97 ETLNIDPEALEKAITPKT-KAILV-VHLFGNPADMDAIRAIARKHGIPLIE 145 (363)
T ss_dssp TTSSB-HHHHHHHHHTTE-EEEEE-E-GGGB---HHHHHHHHHHTT-EEEE
T ss_pred CcCCcCHHHHHHHhccCc-cEEEE-ecCCCCcccHHHHHHHHHHcCCcEEE
Confidence 466778999999988776 55555 89999999988889999999987774
No 95
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=46.45 E-value=55 Score=27.76 Aligned_cols=69 Identities=14% Similarity=0.107 Sum_probs=50.6
Q ss_pred CCCeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCch
Q psy12654 11 PEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDN 80 (133)
Q Consensus 11 ~~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~ 80 (133)
+.++.||.|.-.. -.+++...+++......++.....-|++...++++.+++.+..+||+=-.|-.-|.
T Consensus 22 ~~r~livtd~~~~-~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~ 90 (374)
T cd08183 22 GRRVLLVTGASSL-RAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARNAGCDVVIAIGGGSVIDA 90 (374)
T ss_pred CCcEEEEECCchH-HHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHhcCCCEEEEecCchHHHH
Confidence 6788888886444 45667777776555444443334567888888999999999999999988877765
No 96
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=46.22 E-value=55 Score=27.17 Aligned_cols=62 Identities=16% Similarity=0.206 Sum_probs=47.0
Q ss_pred cccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCC-cEEeecCC---CCCCchhHHhh
Q psy12654 22 TVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGW-GTMVSHRS---GETEDNFIADL 85 (133)
Q Consensus 22 ~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~-~~vvS~rs---GETeD~~iadL 85 (133)
.++|...+..+-. ....++||-.|..|+.|.+.+++...+.|- .+++-||. .++......||
T Consensus 108 ~~~n~~LL~~va~--tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl 173 (250)
T PRK13397 108 NMQNFEFLKTLSH--IDKPILFKRGLMATIEEYLGALSYLQDTGKSNIILCERGVRGYDVETRNMLDI 173 (250)
T ss_pred cccCHHHHHHHHc--cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEccccCCCCCccccccCH
Confidence 3578777777543 367899999999999999999999999887 59999965 34443335555
No 97
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=45.92 E-value=35 Score=29.04 Aligned_cols=53 Identities=19% Similarity=0.314 Sum_probs=41.7
Q ss_pred hccccccHHHHHHHHHHHHHCCCc-E---EeecCCCCCCchhHHhh--hhhhccCceec
Q psy12654 44 KVNQIGSVTESIQAHLLAKQNGWG-T---MVSHRSGETEDNFIADL--VVGLSTGQIKT 96 (133)
Q Consensus 44 K~nQigTvTe~lea~~~a~~~g~~-~---vvS~rsGETeD~~iadL--AVgl~a~~iK~ 96 (133)
+.+..-+..+++++++.+++.|+. + ++-.-.|+|.+++..|+ ++.++..+|.+
T Consensus 131 ~l~R~~~~~~~~~ai~~~~~~g~~~v~~Dli~GlPgqt~~~~~~~l~~~~~l~~~~is~ 189 (370)
T PRK06294 131 LLGRTHSSSKAIDAVQECSEHGFSNLSIDLIYGLPTQSLSDFIVDLHQAITLPITHISL 189 (370)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHccCCCeEEE
Confidence 456667899999999999999985 3 46777899999999877 55666665554
No 98
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=45.80 E-value=20 Score=33.32 Aligned_cols=49 Identities=18% Similarity=0.028 Sum_probs=33.3
Q ss_pred cceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHhhhhh
Q psy12654 40 CLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIADLVVG 88 (133)
Q Consensus 40 a~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iadLAVg 88 (133)
.++|=++|-|.-.|++++++.|++.|..++.-....++.=.-.||..+-
T Consensus 412 ~lvI~ISqSGeT~eti~Al~~Ak~~Ga~~IaITn~~~S~La~~ad~~i~ 460 (680)
T PLN02981 412 DTAVFVSQSGETADTLRALEYAKENGALCVGITNTVGSAISRGTHCGVH 460 (680)
T ss_pred CeEEEEeCCcCCHHHHHHHHHHHHCCCcEEEEECCCCChhHhccCeeEE
Confidence 3444589999999999999999999977755444444332233454333
No 99
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=45.56 E-value=40 Score=27.95 Aligned_cols=55 Identities=20% Similarity=0.193 Sum_probs=41.8
Q ss_pred hccccccHHHHHHHHHHHHHCCCcEEee---cCCCCCCchhHHhh--hhhhccCceecCC
Q psy12654 44 KVNQIGSVTESIQAHLLAKQNGWGTMVS---HRSGETEDNFIADL--VVGLSTGQIKTGA 98 (133)
Q Consensus 44 K~nQigTvTe~lea~~~a~~~g~~~vvS---~rsGETeD~~iadL--AVgl~a~~iK~G~ 98 (133)
+.|.--|+.+.+++++.++++|+.+.+. .-.|||.++++..+ +..++...|++-.
T Consensus 155 ~i~Rg~t~~~~~~ai~~l~~~gi~v~~~lI~GlPget~e~~~~t~~~l~~l~~d~i~i~~ 214 (302)
T TIGR01212 155 KINRGHDFACYVDAVKRARKRGIKVCSHVILGLPGEDREEMMETAKIVSLLDVDGIKIHP 214 (302)
T ss_pred HHcCcChHHHHHHHHHHHHHcCCEEEEeEEECCCCCCHHHHHHHHHHHHhcCCCEEEEEE
Confidence 4466668999999999999999975432 44689999988754 5677777777643
No 100
>PRK13938 phosphoheptose isomerase; Provisional
Probab=44.36 E-value=26 Score=27.60 Aligned_cols=51 Identities=14% Similarity=0.143 Sum_probs=38.1
Q ss_pred cccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHhhhhh
Q psy12654 38 CNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIADLVVG 88 (133)
Q Consensus 38 ~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iadLAVg 88 (133)
-+-++|=.++-|.-.+.+++++.|+++|..++.=....++.=.-.+|..+-
T Consensus 113 ~~DllI~iS~SG~t~~vi~a~~~Ak~~G~~vI~iT~~~~s~La~~aD~~l~ 163 (196)
T PRK13938 113 PGDTLFAISTSGNSMSVLRAAKTARELGVTVVAMTGESGGQLAEFADFLIN 163 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChhhhhCCEEEE
Confidence 345666689999999999999999999999887766555443344555443
No 101
>COG2222 AgaS Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]
Probab=44.35 E-value=22 Score=30.59 Aligned_cols=55 Identities=25% Similarity=0.250 Sum_probs=39.0
Q ss_pred cccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHhhhhhhc
Q psy12654 36 KACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIADLVVGLS 90 (133)
Q Consensus 36 ~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iadLAVgl~ 90 (133)
..-++++|-.+|-|.-.|++.+++.|+..|..++-=..-.++.=.-.+|.++.+.
T Consensus 85 ~~~~~lvi~~S~SG~TpE~vaa~~~a~~~ga~~i~lT~~~dSpLa~~ad~~i~~~ 139 (340)
T COG2222 85 LGEDSLVIAFSQSGNTPESVAAAELAKEGGALTIALTNEEDSPLARAADYVIPYL 139 (340)
T ss_pred cCCCeEEEEEeCCCCCHHHHHHHHHhccCCCeEEEEecCCCChhhhcCCeeeecc
Confidence 3456899999999999999999999999998777655544433223334444443
No 102
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=42.88 E-value=1.4e+02 Score=26.11 Aligned_cols=52 Identities=23% Similarity=0.328 Sum_probs=40.6
Q ss_pred hccccccHHHHHHHHHHHHHCCCc-E---EeecCCCCCCchhHHhh--hhhhccCcee
Q psy12654 44 KVNQIGSVTESIQAHLLAKQNGWG-T---MVSHRSGETEDNFIADL--VVGLSTGQIK 95 (133)
Q Consensus 44 K~nQigTvTe~lea~~~a~~~g~~-~---vvS~rsGETeD~~iadL--AVgl~a~~iK 95 (133)
..|...+..+++++++.+++.|+. + ++-.-.|+|.+++..++ +..++..+|-
T Consensus 180 ~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~p~~i~ 237 (453)
T PRK13347 180 AINRIQPEEMVARAVELLRAAGFESINFDLIYGLPHQTVESFRETLDKVIALSPDRIA 237 (453)
T ss_pred HhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 346778999999999999999985 2 45667899999999876 5566665553
No 103
>PRK02947 hypothetical protein; Provisional
Probab=42.81 E-value=42 Score=27.07 Aligned_cols=38 Identities=21% Similarity=0.193 Sum_probs=30.6
Q ss_pred ccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCC
Q psy12654 39 NCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGE 76 (133)
Q Consensus 39 na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGE 76 (133)
+-++|=.++-|.-.+.+++++.|++.|..+|.=....+
T Consensus 107 ~Dv~i~iS~sG~t~~~i~~~~~a~~~g~~vI~iT~~~~ 144 (246)
T PRK02947 107 GDVLIVVSNSGRNPVPIEMALEAKERGAKVIAVTSLAY 144 (246)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEcCCcc
Confidence 34555589999999999999999999998887655543
No 104
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=42.70 E-value=26 Score=25.60 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=27.5
Q ss_pred HHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHC
Q psy12654 26 PKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQN 64 (133)
Q Consensus 26 ~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~ 64 (133)
..|...-++ .++++++=|-=+||+.|.+++..+.+-.
T Consensus 44 ~~Rk~~m~~--~sda~I~lPGG~GTl~El~~~~~~~~l~ 80 (133)
T PF03641_consen 44 FERKEIMIE--SSDAFIALPGGIGTLDELFEALTLMQLG 80 (133)
T ss_dssp HHHHHHHHH--HESEEEEES-SHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHH--hCCEEEEEecCCchHHHHHHHHHHHhhc
Confidence 444444333 4889999999999999999999876654
No 105
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=42.69 E-value=81 Score=26.87 Aligned_cols=70 Identities=13% Similarity=0.155 Sum_probs=48.0
Q ss_pred CCeEEecCcccccC--HHHHHHHHhhccccccee-hccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchh
Q psy12654 12 EPIQIVGDDLTVTN--PKRIATAVEKKACNCLLL-KVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNF 81 (133)
Q Consensus 12 ~~iqivGDDl~vTn--~~ri~~~i~~~~~na~ll-K~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~ 81 (133)
.++.||.|.-+..+ .+++...+++......+. .+-..-|+....++++.+++.+...||+=-.|-.-|..
T Consensus 31 ~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~a 103 (382)
T PRK10624 31 KKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKASGADYLIAIGGGSPQDTC 103 (382)
T ss_pred CEEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCChHHHHHH
Confidence 68888888755444 456666676654444443 23344567777778888999999999988877776653
No 106
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=42.53 E-value=31 Score=25.81 Aligned_cols=50 Identities=18% Similarity=0.183 Sum_probs=36.9
Q ss_pred cccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHhhhh
Q psy12654 38 CNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIADLVV 87 (133)
Q Consensus 38 ~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iadLAV 87 (133)
.+-++|=.++-|.-.+++++++.|+++|..++.=....++.=.-.+|..+
T Consensus 101 ~~Dv~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~La~~aD~~l 150 (177)
T cd05006 101 PGDVLIGISTSGNSPNVLKALEAAKERGMKTIALTGRDGGKLLELADIEI 150 (177)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEE
Confidence 45566768999999999999999999998887766655544333445443
No 107
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=42.43 E-value=64 Score=26.79 Aligned_cols=90 Identities=20% Similarity=0.133 Sum_probs=54.4
Q ss_pred ccCHHHHHHHHhhc--------ccccceehccccccHHH----HHHHHHHHHHCCCcEE--ee-----cCCCCCCchhHH
Q psy12654 23 VTNPKRIATAVEKK--------ACNCLLLKVNQIGSVTE----SIQAHLLAKQNGWGTM--VS-----HRSGETEDNFIA 83 (133)
Q Consensus 23 vTn~~ri~~~i~~~--------~~na~llK~nQigTvTe----~lea~~~a~~~g~~~v--vS-----~rsGETeD~~ia 83 (133)
+-|.+-++++++.+ +++-..++-|.-.|..| ..+++++|++.|..+. ++ .-.|.+..+++.
T Consensus 79 ~~~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~ 158 (287)
T PRK05692 79 TPNLKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVA 158 (287)
T ss_pred ecCHHHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHH
Confidence 35888888888764 22333334455556656 5579999999999875 22 234566778887
Q ss_pred hh---hhhhccCceec---CCCCchhHHHHHHHHH
Q psy12654 84 DL---VVGLSTGQIKT---GAPCRSERLAKYNQIL 112 (133)
Q Consensus 84 dL---AVgl~a~~iK~---G~p~r~Er~aKyN~LL 112 (133)
++ ++..|+..|-+ .+...-+++..+=+.+
T Consensus 159 ~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l 193 (287)
T PRK05692 159 DVAERLFALGCYEISLGDTIGVGTPGQVRAVLEAV 193 (287)
T ss_pred HHHHHHHHcCCcEEEeccccCccCHHHHHHHHHHH
Confidence 76 45667777643 3333445554443333
No 108
>PRK15482 transcriptional regulator MurR; Provisional
Probab=42.24 E-value=86 Score=25.24 Aligned_cols=56 Identities=13% Similarity=0.153 Sum_probs=44.8
Q ss_pred cccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHhhhhhhccCc
Q psy12654 38 CNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIADLVVGLSTGQ 93 (133)
Q Consensus 38 ~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iadLAVgl~a~~ 93 (133)
.+-++|=.+.-|.-.|++++++.|+++|..++.=..+..+.=.-.||...-+.++.
T Consensus 182 ~~Dv~i~iS~sg~t~~~~~~~~~a~~~g~~iI~IT~~~~s~la~~ad~~l~~~~~~ 237 (285)
T PRK15482 182 KGDVQIAISYSGSKKEIVLCAEAARKQGATVIAITSLADSPLRRLAHFTLDTVSGE 237 (285)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchHHhCCEEEEcCCCc
Confidence 34566668999999999999999999999998888888877777788776554443
No 109
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=41.90 E-value=78 Score=27.30 Aligned_cols=70 Identities=11% Similarity=0.131 Sum_probs=50.1
Q ss_pred CCeEEecCcccccC--HHHHHHHHhhccccccee-hccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchh
Q psy12654 12 EPIQIVGDDLTVTN--PKRIATAVEKKACNCLLL-KVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNF 81 (133)
Q Consensus 12 ~~iqivGDDl~vTn--~~ri~~~i~~~~~na~ll-K~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~ 81 (133)
.++.||+|.-...+ .+++...+++......+. .+...-|+...-++++.+++.+...||+=-.|-+-|..
T Consensus 50 ~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~~D~IiavGGGS~iD~A 122 (395)
T PRK15454 50 KHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESGCDGVIAFGGGSVLDAA 122 (395)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCcCEEEEeCChHHHHHH
Confidence 67888888654433 366777777655554444 45556677888888899999999999988888777653
No 110
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=41.32 E-value=89 Score=26.40 Aligned_cols=56 Identities=21% Similarity=0.128 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHCCCcEEe-ecCCCCC-Cc--hhH-------HhhhhhhccCceecCCC---CchhHHH
Q psy12654 51 VTESIQAHLLAKQNGWGTMV-SHRSGET-ED--NFI-------ADLVVGLSTGQIKTGAP---CRSERLA 106 (133)
Q Consensus 51 vTe~lea~~~a~~~g~~~vv-S~rsGET-eD--~~i-------adLAVgl~a~~iK~G~p---~r~Er~a 106 (133)
+.+..++++.|.+.|+.+|. ..--|-. .| .+. +.++.-+|+..||+.-| .+.+|+.
T Consensus 129 i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~ytg~~e~F~~vv 198 (265)
T COG1830 129 IENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTKYTGDPESFRRVV 198 (265)
T ss_pred HHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeecCCCChHHHHHHH
Confidence 44566778889999999888 5544443 24 233 34677899999998554 4555543
No 111
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=40.73 E-value=1.4e+02 Score=21.52 Aligned_cols=42 Identities=17% Similarity=0.184 Sum_probs=33.3
Q ss_pred ccccceehccccccHHHHHHHHHHHHHCCCcE--EeecCCCCCC
Q psy12654 37 ACNCLLLKVNQIGSVTESIQAHLLAKQNGWGT--MVSHRSGETE 78 (133)
Q Consensus 37 ~~na~llK~nQigTvTe~lea~~~a~~~g~~~--vvS~rsGETe 78 (133)
.+..+++-.++.|++.+++-.++.++..|+.+ ++..+..+.+
T Consensus 68 ~~~vllV~~~~~g~i~~a~~~~~~l~~~g~~i~gvi~N~~~~~~ 111 (134)
T cd03109 68 NLPAILVTSAGLGSINHAFLTIEAARIKGIILNGVLGNVIVEKE 111 (134)
T ss_pred CCCEEEEEcCCCCcHhHHHHHHHHHHhcCCceeEEEEccCCCcc
Confidence 45688998999999999999999999999875 5555555443
No 112
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=40.72 E-value=59 Score=27.45 Aligned_cols=51 Identities=18% Similarity=0.294 Sum_probs=38.7
Q ss_pred cccccHHHHHHHHHHHHHCCCcE----EeecCCCCCCchhHHhh--hhhhccCceec
Q psy12654 46 NQIGSVTESIQAHLLAKQNGWGT----MVSHRSGETEDNFIADL--VVGLSTGQIKT 96 (133)
Q Consensus 46 nQigTvTe~lea~~~a~~~g~~~----vvS~rsGETeD~~iadL--AVgl~a~~iK~ 96 (133)
+...+..+.+++++.+++.|+.. ++-.-.|||.+++..++ +..++..+|.+
T Consensus 130 ~r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPgqt~~~~~~~l~~~~~l~~~~i~~ 186 (377)
T PRK08599 130 GRTHNEEDVYEAIANAKKAGFDNISIDLIYALPGQTIEDFKESLAKALALDIPHYSA 186 (377)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCcEEEeeecCCCCCCHHHHHHHHHHHHccCCCEEee
Confidence 45668899999999999999753 34566799999998866 55666665544
No 113
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=40.57 E-value=74 Score=27.12 Aligned_cols=73 Identities=11% Similarity=0.134 Sum_probs=46.3
Q ss_pred ccCHHHHHHHHhhcccc-cceehcc-------ccccHHHHH----HHHHHHHHCCCcEEeecCC-CCCCchhHHhhh---
Q psy12654 23 VTNPKRIATAVEKKACN-CLLLKVN-------QIGSVTESI----QAHLLAKQNGWGTMVSHRS-GETEDNFIADLV--- 86 (133)
Q Consensus 23 vTn~~ri~~~i~~~~~n-a~llK~n-------QigTvTe~l----ea~~~a~~~g~~~vvS~rs-GETeD~~iadLA--- 86 (133)
.+|++.|+.+.+.+... .+.+..+ --.|..|++ +++++|++.|+.+.++.-. +.++.+|+.+++
T Consensus 72 r~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~ 151 (365)
T TIGR02660 72 RARDADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVA 151 (365)
T ss_pred CCCHHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHH
Confidence 46788888877654211 1222222 223444545 8999999999999888766 446778888774
Q ss_pred hhhccCcee
Q psy12654 87 VGLSTGQIK 95 (133)
Q Consensus 87 Vgl~a~~iK 95 (133)
+..|+..|-
T Consensus 152 ~~~Ga~~i~ 160 (365)
T TIGR02660 152 AEAGADRFR 160 (365)
T ss_pred HHcCcCEEE
Confidence 455666654
No 114
>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be
Probab=40.28 E-value=76 Score=25.05 Aligned_cols=69 Identities=13% Similarity=0.080 Sum_probs=47.9
Q ss_pred HHHHHHhhcccccceehccccccHHH--HHHHHHHHHHCCCcEEeecC---CCCCCchhHHhhhhhhccCceec
Q psy12654 28 RIATAVEKKACNCLLLKVNQIGSVTE--SIQAHLLAKQNGWGTMVSHR---SGETEDNFIADLVVGLSTGQIKT 96 (133)
Q Consensus 28 ri~~~i~~~~~na~llK~nQigTvTe--~lea~~~a~~~g~~~vvS~r---sGETeD~~iadLAVgl~a~~iK~ 96 (133)
.+...+.+...++..+.|.|...+++ ..+.++.+-++|+-+|+..- ..-+.|...+-+|..+++..+-.
T Consensus 81 ll~~~L~~~Gv~a~~l~~~~~~~~~~~~~~~~l~~~l~~g~ipV~~g~~G~~~~~~D~~a~~lA~~l~a~~l~~ 154 (231)
T cd04254 81 ALQDALESLGVKTRVMSAIPMQGVAEPYIRRRAIRHLEKGRVVIFAGGTGNPFFTTDTAAALRAIEINADVILK 154 (231)
T ss_pred HHHHHHHHcCCCeEEEcHHHhhhhhcccCHHHHHHHHHCCCEEEEECCcCCCCCCcHHHHHHHHHHcCCCEEEE
Confidence 44546667777888888877644432 24667777888987777743 23457888889999999987654
No 115
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=40.05 E-value=84 Score=25.29 Aligned_cols=51 Identities=27% Similarity=0.264 Sum_probs=39.3
Q ss_pred cccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHhhhhh
Q psy12654 38 CNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIADLVVG 88 (133)
Q Consensus 38 ~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iadLAVg 88 (133)
.+-++|=.+.-|.-.+.+++++.|+++|..++.=.....+.=.-+||..+=
T Consensus 187 ~~Dl~I~iS~sG~t~~~~~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~ 237 (292)
T PRK11337 187 EGDVVLVVSHSGRTSDVIEAVELAKKNGAKIICITNSYHSPIAKLADYVIC 237 (292)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEE
Confidence 345555588889889999999999999999888777766655556666553
No 116
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=39.57 E-value=35 Score=26.46 Aligned_cols=54 Identities=17% Similarity=0.165 Sum_probs=40.7
Q ss_pred cccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHhhhhhhcc
Q psy12654 38 CNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIADLVVGLST 91 (133)
Q Consensus 38 ~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iadLAVgl~a 91 (133)
-+-++|=.++-|.-.+.+++++.|+++|..++.=....++.=.-.+|..+-+..
T Consensus 111 ~~Dv~I~iS~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~s~l~~~ad~~l~~~~ 164 (192)
T PRK00414 111 EGDVLLGISTSGNSGNIIKAIEAARAKGMKVITLTGKDGGKMAGLADIEIRVPH 164 (192)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEeCC
Confidence 334566689999999999999999999999888777655544446666664443
No 117
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=39.55 E-value=96 Score=27.14 Aligned_cols=78 Identities=14% Similarity=0.149 Sum_probs=52.2
Q ss_pred HHHHHhhcccccceehcc-----ccccHHHHHHHHHHHHHCCCcEEe-ecCCCCC---C------chhH---Hhhhhhhc
Q psy12654 29 IATAVEKKACNCLLLKVN-----QIGSVTESIQAHLLAKQNGWGTMV-SHRSGET---E------DNFI---ADLVVGLS 90 (133)
Q Consensus 29 i~~~i~~~~~na~llK~n-----QigTvTe~lea~~~a~~~g~~~vv-S~rsGET---e------D~~i---adLAVgl~ 90 (133)
++.|++-+ |.|+-+-+| +.-.+.+.-++++.|++.|+-+|+ +..-|+. + .+.| +.+|+-+|
T Consensus 152 VedAlrLG-AdAV~~tvy~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELG 230 (348)
T PRK09250 152 VEDALRLG-AVAVGATIYFGSEESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIG 230 (348)
T ss_pred HHHHHHCC-CCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHc
Confidence 44555544 446666443 344677788888999999999887 5555542 1 1344 47899999
Q ss_pred cCceecCCCCchhHHHH
Q psy12654 91 TGQIKTGAPCRSERLAK 107 (133)
Q Consensus 91 a~~iK~G~p~r~Er~aK 107 (133)
|..||+--|...+..++
T Consensus 231 ADIVKv~yp~~~~~f~~ 247 (348)
T PRK09250 231 ADIIKQKLPTNNGGYKA 247 (348)
T ss_pred CCEEEecCCCChhhHHH
Confidence 99999987754444444
No 118
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=39.32 E-value=56 Score=27.79 Aligned_cols=51 Identities=14% Similarity=0.115 Sum_probs=38.8
Q ss_pred hccccccHHHHHHHHHHHHHCCCc-E---EeecCCCCCCchhHHhh--hhhhccCce
Q psy12654 44 KVNQIGSVTESIQAHLLAKQNGWG-T---MVSHRSGETEDNFIADL--VVGLSTGQI 94 (133)
Q Consensus 44 K~nQigTvTe~lea~~~a~~~g~~-~---vvS~rsGETeD~~iadL--AVgl~a~~i 94 (133)
+.+...+..+++++++.+++.|+. + ++-.-.|||.+++..++ +..++..+|
T Consensus 131 ~l~R~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPgqt~e~~~~tl~~~~~l~p~~i 187 (353)
T PRK05904 131 QLNRTHTIQDSKEAINLLHKNGIYNISCDFLYCLPILKLKDLDEVFNFILKHKINHI 187 (353)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeecCCCCCHHHHHHHHHHHHhcCCCEE
Confidence 456778999999999999999975 2 34555799999998766 555655554
No 119
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=39.29 E-value=1.1e+02 Score=25.88 Aligned_cols=71 Identities=17% Similarity=0.261 Sum_probs=50.6
Q ss_pred cCCCeEEecCccc-ccCH--HHHHHHHhhccccccee-hccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCch
Q psy12654 10 APEPIQIVGDDLT-VTNP--KRIATAVEKKACNCLLL-KVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDN 80 (133)
Q Consensus 10 ~~~~iqivGDDl~-vTn~--~ri~~~i~~~~~na~ll-K~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~ 80 (133)
.+.++.||.|.-. ..+. +++...+++......+. .+..--|+....++++.+++.+...||+=-.|-.-|.
T Consensus 24 ~g~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiavGGGS~iD~ 98 (380)
T cd08185 24 PGKKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVVGLGGGSSMDT 98 (380)
T ss_pred cCCeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEEeCCccHHHH
Confidence 4578889988754 2333 56666676655555444 3445568888888889999999999998888877765
No 120
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=38.95 E-value=1.1e+02 Score=26.56 Aligned_cols=69 Identities=17% Similarity=0.138 Sum_probs=51.2
Q ss_pred CCeEEecCcccccC--HHHHHHHHhhccccccee-hccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCch
Q psy12654 12 EPIQIVGDDLTVTN--PKRIATAVEKKACNCLLL-KVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDN 80 (133)
Q Consensus 12 ~~iqivGDDl~vTn--~~ri~~~i~~~~~na~ll-K~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~ 80 (133)
.++.||.|.-...+ .+++.+.+++...+..+. .+-..-|+....++++.+++.+..+||+=-.|-.-|.
T Consensus 24 ~~vlivt~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGSviD~ 95 (414)
T cd08190 24 RRVCLVTDPNLAQLPPVKVVLDSLEAAGINFEVYDDVRVEPTDESFKDAIAFAKKGQFDAFVAVGGGSVIDT 95 (414)
T ss_pred CeEEEEECcchhhcchHHHHHHHHHHcCCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccHHHH
Confidence 78899988765554 377777777655555543 2334557888888999999999999999888877665
No 121
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=38.85 E-value=79 Score=25.89 Aligned_cols=90 Identities=16% Similarity=0.090 Sum_probs=53.8
Q ss_pred cccCHHHHHHHHhhccccccee---------hccccccHHHHHH----HHHHHHHCCCcEEeecCCCC-CCchhHHhhh-
Q psy12654 22 TVTNPKRIATAVEKKACNCLLL---------KVNQIGSVTESIQ----AHLLAKQNGWGTMVSHRSGE-TEDNFIADLV- 86 (133)
Q Consensus 22 ~vTn~~ri~~~i~~~~~na~ll---------K~nQigTvTe~le----a~~~a~~~g~~~vvS~rsGE-TeD~~iadLA- 86 (133)
.+-|.+.+.++.+-+. ..+-+ +.|+-.|..|+++ ++++|++.|+.+.++--..- +..+++.+++
T Consensus 70 ~r~~~~di~~a~~~g~-~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~ 148 (262)
T cd07948 70 IRCHMDDARIAVETGV-DGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYR 148 (262)
T ss_pred ecCCHHHHHHHHHcCc-CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHH
Confidence 3668888999887642 22222 4456667777554 55999999999888864322 3456676554
Q ss_pred --hhhccCcee---cCCCCchhHHHHHHHHH
Q psy12654 87 --VGLSTGQIK---TGAPCRSERLAKYNQIL 112 (133)
Q Consensus 87 --Vgl~a~~iK---~G~p~r~Er~aKyN~LL 112 (133)
...++..|- +.+-..-+++..+=+.+
T Consensus 149 ~~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~ 179 (262)
T cd07948 149 AVDKLGVNRVGIADTVGIATPRQVYELVRTL 179 (262)
T ss_pred HHHHcCCCEEEECCcCCCCCHHHHHHHHHHH
Confidence 455666553 23333445555444433
No 122
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=38.78 E-value=85 Score=26.97 Aligned_cols=72 Identities=13% Similarity=0.181 Sum_probs=44.7
Q ss_pred cCHHHHHHHHhhccc-ccceehc-------cccccHHHHH----HHHHHHHHCCCcEEeec-CCCCCCchhHHhhh---h
Q psy12654 24 TNPKRIATAVEKKAC-NCLLLKV-------NQIGSVTESI----QAHLLAKQNGWGTMVSH-RSGETEDNFIADLV---V 87 (133)
Q Consensus 24 Tn~~ri~~~i~~~~~-na~llK~-------nQigTvTe~l----ea~~~a~~~g~~~vvS~-rsGETeD~~iadLA---V 87 (133)
++.+.+.++.+.+.- =.+.+.. +.-.|..|++ +++++|++.|+.+.++. -.+.++.+|+.+++ .
T Consensus 76 ~~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~ 155 (378)
T PRK11858 76 AVKSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAE 155 (378)
T ss_pred cCHHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHH
Confidence 457777777765421 1122222 2234445555 49999999999999985 34567788888775 4
Q ss_pred hhccCcee
Q psy12654 88 GLSTGQIK 95 (133)
Q Consensus 88 gl~a~~iK 95 (133)
..|+..|-
T Consensus 156 ~~Ga~~I~ 163 (378)
T PRK11858 156 EAGADRVR 163 (378)
T ss_pred hCCCCEEE
Confidence 45555553
No 123
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=38.61 E-value=81 Score=23.49 Aligned_cols=38 Identities=21% Similarity=0.404 Sum_probs=27.7
Q ss_pred HHHHHHHHhhc-ccccceehccccccHHHHHHHHHHHHH
Q psy12654 26 PKRIATAVEKK-ACNCLLLKVNQIGSVTESIQAHLLAKQ 63 (133)
Q Consensus 26 ~~ri~~~i~~~-~~na~llK~nQigTvTe~lea~~~a~~ 63 (133)
+..+......- ..+.++|=.++-|+--|++.+++.+++
T Consensus 60 ~~~~~~~~~~~~~~~tlvi~iSkSG~T~Et~~~~~~a~~ 98 (158)
T cd05015 60 PDDLAELLKKLDPETTLFIVISKSGTTLETLANARLARE 98 (158)
T ss_pred HHHHHHHHHhCCcccEEEEEEECCcCCHHHHHHHHHHHH
Confidence 65555555432 467777778888888888888888887
No 124
>PRK08508 biotin synthase; Provisional
Probab=38.08 E-value=52 Score=26.93 Aligned_cols=36 Identities=28% Similarity=0.283 Sum_probs=28.3
Q ss_pred cccHHHHHHHHHHHHHCCCcE----EeecCCCCCCchhHHhh
Q psy12654 48 IGSVTESIQAHLLAKQNGWGT----MVSHRSGETEDNFIADL 85 (133)
Q Consensus 48 igTvTe~lea~~~a~~~g~~~----vvS~rsGETeD~~iadL 85 (133)
..+..+.+++++.|++.|+.+ |+++ |||.++.+-++
T Consensus 133 ~~~~~~~l~~i~~a~~~Gi~v~sg~I~Gl--GEt~ed~~~~l 172 (279)
T PRK08508 133 THTWEERFQTCENAKEAGLGLCSGGIFGL--GESWEDRISFL 172 (279)
T ss_pred CCCHHHHHHHHHHHHHcCCeecceeEEec--CCCHHHHHHHH
Confidence 356778899999999999877 7776 99987766554
No 125
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=37.93 E-value=54 Score=28.49 Aligned_cols=52 Identities=12% Similarity=0.150 Sum_probs=40.1
Q ss_pred cccccHHHHHHHHHHHHHCCCcE----EeecCCCCCCchhHHhh--hhhhccCceecC
Q psy12654 46 NQIGSVTESIQAHLLAKQNGWGT----MVSHRSGETEDNFIADL--VVGLSTGQIKTG 97 (133)
Q Consensus 46 nQigTvTe~lea~~~a~~~g~~~----vvS~rsGETeD~~iadL--AVgl~a~~iK~G 97 (133)
+..-+..+.+++++.+++.|+.. ++-.-.|+|.+++..++ +..++...|.+=
T Consensus 171 ~R~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~qt~e~~~~~l~~~~~l~~~~is~y 228 (430)
T PRK08208 171 HRPQKRADVHQALEWIRAAGFPILNIDLIYGIPGQTHASWMESLDQALVYRPEELFLY 228 (430)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEEc
Confidence 44557889999999999999875 45677899999998866 556666666553
No 126
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=37.59 E-value=80 Score=27.53 Aligned_cols=51 Identities=14% Similarity=0.054 Sum_probs=36.9
Q ss_pred cccccHHHHHHHHHHHHHCCCcEEee---cCCCCCCchhHHhh--hhhhccCceec
Q psy12654 46 NQIGSVTESIQAHLLAKQNGWGTMVS---HRSGETEDNFIADL--VVGLSTGQIKT 96 (133)
Q Consensus 46 nQigTvTe~lea~~~a~~~g~~~vvS---~rsGETeD~~iadL--AVgl~a~~iK~ 96 (133)
+.--++.+..++++.++++|+.+..+ .-.|||.+++...+ +..++...+.+
T Consensus 317 ~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~l~~~~~~~ 372 (472)
T TIGR03471 317 KKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKELNPHTIQV 372 (472)
T ss_pred cCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 34457778999999999999987654 55789998887754 55555555444
No 127
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=37.56 E-value=69 Score=26.97 Aligned_cols=53 Identities=17% Similarity=0.225 Sum_probs=41.2
Q ss_pred hccccccHHHHHHHHHHHHHCCCcE----EeecCCCCCCchhHHhh--hhhhccCceec
Q psy12654 44 KVNQIGSVTESIQAHLLAKQNGWGT----MVSHRSGETEDNFIADL--VVGLSTGQIKT 96 (133)
Q Consensus 44 K~nQigTvTe~lea~~~a~~~g~~~----vvS~rsGETeD~~iadL--AVgl~a~~iK~ 96 (133)
..+...+..+++++++.+++.|+.. ++-.-.|+|.+++..|+ ++.++..+|.+
T Consensus 126 ~lgR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPgqt~~~~~~~l~~~~~l~~~~is~ 184 (350)
T PRK08446 126 FLGRIHSQKQIIKAIENAKKAGFENISIDLIYDTPLDNKKLLKEELKLAKELPINHLSA 184 (350)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEe
Confidence 3466778999999999999999852 44555789999998876 66777776654
No 128
>PRK06267 hypothetical protein; Provisional
Probab=37.52 E-value=55 Score=27.79 Aligned_cols=39 Identities=26% Similarity=0.238 Sum_probs=30.2
Q ss_pred ccccccHHHHHHHHHHHHHCCCc----EEeecCCCCCCchhHHhh
Q psy12654 45 VNQIGSVTESIQAHLLAKQNGWG----TMVSHRSGETEDNFIADL 85 (133)
Q Consensus 45 ~nQigTvTe~lea~~~a~~~g~~----~vvS~rsGETeD~~iadL 85 (133)
.+.-++..+.+++++.+++.|+. +++++ ||+.+++...+
T Consensus 146 i~~~~s~ed~~~~l~~ak~aGi~v~~g~IiGl--gEt~ed~~~~l 188 (350)
T PRK06267 146 ICPGKPLDKIKEMLLKAKDLGLKTGITIILGL--GETEDDIEKLL 188 (350)
T ss_pred hCCCCCHHHHHHHHHHHHHcCCeeeeeEEEeC--CCCHHHHHHHH
Confidence 34457899999999999999998 55554 88987766543
No 129
>COG1551 CsrA RNA-binding global regulator CsrA [Signal transduction mechanisms]
Probab=36.87 E-value=14 Score=25.55 Aligned_cols=19 Identities=37% Similarity=0.628 Sum_probs=15.7
Q ss_pred hhhhhcCCCeEEecCccccc
Q psy12654 5 QLNDFAPEPIQIVGDDLTVT 24 (133)
Q Consensus 5 ~~~~~~~~~iqivGDDl~vT 24 (133)
+|+++.+..+ ++|||..+|
T Consensus 3 ILsRk~~Esi-~IgddI~it 21 (73)
T COG1551 3 ILSRKVGESI-MIGDDIEIT 21 (73)
T ss_pred eEEeecCceE-EecCCeEEE
Confidence 5778888888 789999877
No 130
>PRK00358 pyrH uridylate kinase; Provisional
Probab=36.80 E-value=87 Score=24.50 Aligned_cols=40 Identities=10% Similarity=-0.021 Sum_probs=29.5
Q ss_pred HHHHHHHHCCCcEEee---cCCCCCCchhHHhhhhhhccCcee
Q psy12654 56 QAHLLAKQNGWGTMVS---HRSGETEDNFIADLVVGLSTGQIK 95 (133)
Q Consensus 56 ea~~~a~~~g~~~vvS---~rsGETeD~~iadLAVgl~a~~iK 95 (133)
+.++..-++|+-+|+. .....+.|...+-+|..+++..+-
T Consensus 111 ~~~~~~l~~g~vPVv~g~~~~~~~ssD~~A~~lA~~l~A~~li 153 (231)
T PRK00358 111 RRAIRHLEKGRVVIFAAGTGNPFFTTDTAAALRAEEIGADVLL 153 (231)
T ss_pred HHHHHHHHCCCEEEEECCCCCCCCCchHHHHHHHHHcCCCEEE
Confidence 4455667788888883 333467889999999999998664
No 131
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=36.56 E-value=1.2e+02 Score=25.62 Aligned_cols=69 Identities=17% Similarity=0.188 Sum_probs=49.4
Q ss_pred CCeEEecCcccccC--HHHHHHHHhhccccccee-hccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCch
Q psy12654 12 EPIQIVGDDLTVTN--PKRIATAVEKKACNCLLL-KVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDN 80 (133)
Q Consensus 12 ~~iqivGDDl~vTn--~~ri~~~i~~~~~na~ll-K~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~ 80 (133)
.++.||.|.-...+ .+++...+++......++ .+-..-|++...++++.+++.+..+||+--.|-.-|.
T Consensus 27 ~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGS~~D~ 98 (374)
T cd08189 27 KKVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYRENGCDAILAVGGGSVIDC 98 (374)
T ss_pred CeEEEEeCcchhhcccHHHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccHHHH
Confidence 68999988764443 356777776554444433 3334467888888999999999999999888877765
No 132
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=36.53 E-value=38 Score=26.63 Aligned_cols=54 Identities=17% Similarity=0.084 Sum_probs=42.3
Q ss_pred cccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHhhhhhhcc
Q psy12654 38 CNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIADLVVGLST 91 (133)
Q Consensus 38 ~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iadLAVgl~a 91 (133)
.+-++|=.++-|.-.+++++++.|+++|..++.=....++.=.-.+|+.+-+.+
T Consensus 47 ~~d~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~~~~d~~l~~~~ 100 (268)
T TIGR00393 47 PNDVVLMISYSGESLELLNLIPHLKRLSHKIIAFTGSPNSSLARAADYVLDIKV 100 (268)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEEEECCCCCcccccCCEEEEcCC
Confidence 345666689999999999999999999998887777766655556677665544
No 133
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=36.16 E-value=65 Score=28.92 Aligned_cols=69 Identities=14% Similarity=0.286 Sum_probs=46.6
Q ss_pred HHHHHHHHhhcccccceehc-----------cccccHHHHHHHHHHHHHCCCc----EEeecCCCCCCchhHHhh--hhh
Q psy12654 26 PKRIATAVEKKACNCLLLKV-----------NQIGSVTESIQAHLLAKQNGWG----TMVSHRSGETEDNFIADL--VVG 88 (133)
Q Consensus 26 ~~ri~~~i~~~~~na~llK~-----------nQigTvTe~lea~~~a~~~g~~----~vvS~rsGETeD~~iadL--AVg 88 (133)
++.++. +.+-.+|.+.|-| +...|+.+++++++.+++.|+. -++-.-.|||.+++..++ +..
T Consensus 269 ~e~L~~-Lk~~Gv~RISIGvQS~~d~vLk~igR~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPgEt~ed~~~tl~~l~~ 347 (488)
T PRK08207 269 EEKLEV-LKKYGVDRISINPQTMNDETLKAIGRHHTVEDIIEKFHLAREMGFDNINMDLIIGLPGEGLEEVKHTLEEIEK 347 (488)
T ss_pred HHHHHH-HHhcCCCeEEEcCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 444444 4444455554433 4557899999999999999993 345566799999998876 445
Q ss_pred hccCcee
Q psy12654 89 LSTGQIK 95 (133)
Q Consensus 89 l~a~~iK 95 (133)
++...+.
T Consensus 348 L~pd~is 354 (488)
T PRK08207 348 LNPESLT 354 (488)
T ss_pred cCcCEEE
Confidence 5555443
No 134
>PRK08227 autoinducer 2 aldolase; Validated
Probab=35.99 E-value=1.2e+02 Score=25.37 Aligned_cols=71 Identities=17% Similarity=0.154 Sum_probs=47.6
Q ss_pred HHHHHhhcccccceehcc-----ccccHHHHHHHHHHHHHCCCcEEeecCCCCC---CchhHH---hhhhhhccCceecC
Q psy12654 29 IATAVEKKACNCLLLKVN-----QIGSVTESIQAHLLAKQNGWGTMVSHRSGET---EDNFIA---DLVVGLSTGQIKTG 97 (133)
Q Consensus 29 i~~~i~~~~~na~llK~n-----QigTvTe~lea~~~a~~~g~~~vvS~rsGET---eD~~ia---dLAVgl~a~~iK~G 97 (133)
++.+++-+ +.|+.+-+| +--.+.+.-++++.|++.|+-++.-..-|+- +.+.|+ -+|+-||+..||+-
T Consensus 100 VeeAvrlG-AdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~ 178 (264)
T PRK08227 100 MEDAVRLN-ACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMAVTAVGKDMVRDARYFSLATRIAAEMGAQIIKTY 178 (264)
T ss_pred HHHHHHCC-CCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCcCchHHHHHHHHHHHHHHcCCEEecC
Confidence 44555443 456666444 3446777778889999999998885555543 233454 56888999999987
Q ss_pred CCC
Q psy12654 98 APC 100 (133)
Q Consensus 98 ~p~ 100 (133)
-|.
T Consensus 179 y~~ 181 (264)
T PRK08227 179 YVE 181 (264)
T ss_pred CCH
Confidence 663
No 135
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=35.74 E-value=1.1e+02 Score=27.59 Aligned_cols=88 Identities=11% Similarity=0.134 Sum_probs=56.0
Q ss_pred EEecCcccccC--HHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHC--CCcEEeecCCCCCCchhHHhhhhhhc
Q psy12654 15 QIVGDDLTVTN--PKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQN--GWGTMVSHRSGETEDNFIADLVVGLS 90 (133)
Q Consensus 15 qivGDDl~vTn--~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~--g~~~vvS~rsGETeD~~iadLAVgl~ 90 (133)
+.||+-.-+++ ++|+...++ ..++.+.|-..+ |--.-.+++++..++. +..+|+ |...+---+--+...|
T Consensus 214 l~Vgaav~~~~~~~~ra~~Lv~-aGVd~i~~D~a~-g~~~~~~~~i~~i~~~~~~~~vi~----g~~~t~~~~~~l~~~G 287 (475)
T TIGR01303 214 LRIGAAVGINGDVGGKAKALLD-AGVDVLVIDTAH-GHQVKMISAIKAVRALDLGVPIVA----GNVVSAEGVRDLLEAG 287 (475)
T ss_pred ceehheeeeCccHHHHHHHHHH-hCCCEEEEeCCC-CCcHHHHHHHHHHHHHCCCCeEEE----eccCCHHHHHHHHHhC
Confidence 34554333322 456666554 568889999988 6667788889988887 667776 3333233334455678
Q ss_pred cCceecCCCCchhHHHHH
Q psy12654 91 TGQIKTGAPCRSERLAKY 108 (133)
Q Consensus 91 a~~iK~G~p~r~Er~aKy 108 (133)
+..||.|.-.++-++..+
T Consensus 288 ~d~i~vg~g~Gs~~ttr~ 305 (475)
T TIGR01303 288 ANIIKVGVGPGAMCTTRM 305 (475)
T ss_pred CCEEEECCcCCccccCcc
Confidence 999997665555555443
No 136
>cd01094 Alkanesulfonate_monoxygenase Alkanesulfonate monoxygenase is the monoxygenase of a two-component system that catalyzes the conversion of alkanesulfonates to the corresponding aldehyde and sulfite. Alkanesulfonate monoxygenase (SsuD) has an absolute requirement for reduced flavin mononucleotide (FMNH2), which is provided by the NADPH-dependent FMN oxidoreductase (SsuE).
Probab=35.17 E-value=73 Score=25.11 Aligned_cols=49 Identities=14% Similarity=0.133 Sum_probs=35.0
Q ss_pred cHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHhhhhhhccCceecCC
Q psy12654 50 SVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIADLVVGLSTGQIKTGA 98 (133)
Q Consensus 50 TvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iadLAVgl~a~~iK~G~ 98 (133)
+..+.++.+++|.+.|+..+...-.+-..|.++.--+++-.+..|++|.
T Consensus 26 ~~~~~~~~a~~Ae~~Gfd~~w~~e~~~~~dp~~~la~~A~~T~~i~lgt 74 (244)
T cd01094 26 DFEYNRQIAQAAEELGFDGALSPTGSSGPDGWTVAAALAAATERLKFLV 74 (244)
T ss_pred CHHHHHHHHHHHHHCCCCEEEccCCCCCCCHHHHHHHHHHHHhhhhhhh
Confidence 5778888899999999986655443344566766667777777777774
No 137
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=35.17 E-value=1.2e+02 Score=25.80 Aligned_cols=70 Identities=17% Similarity=0.224 Sum_probs=50.6
Q ss_pred CCCeEEecCcccccC--HHHHHHHHhhccccccee-hccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCch
Q psy12654 11 PEPIQIVGDDLTVTN--PKRIATAVEKKACNCLLL-KVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDN 80 (133)
Q Consensus 11 ~~~iqivGDDl~vTn--~~ri~~~i~~~~~na~ll-K~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~ 80 (133)
+.++.||.|.-...+ .+++...+++...+..++ .+...-++...-++++.+++.+...||+=-.|-.-|.
T Consensus 23 ~~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~ 95 (375)
T cd08194 23 GKRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGGCDVIIALGGGSPIDT 95 (375)
T ss_pred CCeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHHHH
Confidence 468888987655443 266777776655544433 4455577888889999999999999999888877664
No 138
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=35.15 E-value=98 Score=26.76 Aligned_cols=50 Identities=20% Similarity=0.162 Sum_probs=41.1
Q ss_pred ccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCC-cEEeecCC
Q psy12654 23 VTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGW-GTMVSHRS 74 (133)
Q Consensus 23 vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~-~~vvS~rs 74 (133)
++|...|..+-. ..-.++||-.+..|+.|...+++...+.|- .+++.||.
T Consensus 212 ~~n~~LL~~~a~--~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg 262 (360)
T PRK12595 212 MQNFELLKAAGR--VNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERG 262 (360)
T ss_pred ccCHHHHHHHHc--cCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCc
Confidence 578777777543 355899999999999999999999998887 68999865
No 139
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=35.05 E-value=86 Score=27.78 Aligned_cols=67 Identities=10% Similarity=0.038 Sum_probs=44.3
Q ss_pred ccccccHHHHHHHHHHHHHCCCcEEe---ecCCCCCCchhHHh--hhhhhccCceecCCCCchhHHHHHHHH
Q psy12654 45 VNQIGSVTESIQAHLLAKQNGWGTMV---SHRSGETEDNFIAD--LVVGLSTGQIKTGAPCRSERLAKYNQI 111 (133)
Q Consensus 45 ~nQigTvTe~lea~~~a~~~g~~~vv---S~rsGETeD~~iad--LAVgl~a~~iK~G~p~r~Er~aKyN~L 111 (133)
.+.-.|+.+..+++++++++|+.+.+ -.-.|||.+++... ++..++..++-+.....-.-+.-|+++
T Consensus 316 ~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~~~~~~~~tP~PGT~l~~~~ 387 (497)
T TIGR02026 316 FRKGTTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWDPDQANWLMYTPWPFTSLFGEL 387 (497)
T ss_pred hcCCCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcCCCceEEEEecCCCCcHHHHHH
Confidence 45567889999999999999996543 35568999988764 466676666655433222233344443
No 140
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=34.36 E-value=79 Score=24.99 Aligned_cols=49 Identities=18% Similarity=0.087 Sum_probs=33.6
Q ss_pred cHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHhhhhhhccCceecCCCCchhHHHHHH
Q psy12654 50 SVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIADLVVGLSTGQIKTGAPCRSERLAKYN 109 (133)
Q Consensus 50 TvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iadLAVgl~a~~iK~G~p~r~Er~aKyN 109 (133)
++.|.+..++. ...+|| .|+..+|||.+++.+-|=+=+|...++..-|+
T Consensus 188 ~l~e~~~li~~-----~~l~I~------~Dsg~~HlA~a~~~p~i~l~g~~~~~~~~p~~ 236 (279)
T cd03789 188 SLRELAALLAR-----ADLVVT------NDSGPMHLAAALGTPTVALFGPTDPARTGPPG 236 (279)
T ss_pred CHHHHHHHHHh-----CCEEEe------eCCHHHHHHHHcCCCEEEEECCCCccccCCCC
Confidence 66666555443 345666 46889999999999998876666666554444
No 141
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=34.24 E-value=45 Score=27.14 Aligned_cols=52 Identities=12% Similarity=0.048 Sum_probs=42.2
Q ss_pred cceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHhhhhhhcc
Q psy12654 40 CLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIADLVVGLST 91 (133)
Q Consensus 40 a~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iadLAVgl~a 91 (133)
-++|=.++-|.-.+.+++++.|+++|..++.=...+++.=.-+||..+-...
T Consensus 91 d~~i~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~la~~ad~~l~~~~ 142 (321)
T PRK11543 91 DVMLFISYSGGAKELDLIIPRLEDKSIALLAMTGKPTSPLGLAAKAVLDISV 142 (321)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEECCCCChhHHhCCEEEEcCC
Confidence 4555589999999999999999999999998888888766667777664433
No 142
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=33.93 E-value=1.9e+02 Score=24.99 Aligned_cols=73 Identities=18% Similarity=0.270 Sum_probs=45.6
Q ss_pred hccccccHHHHHHHHHHHHHC--CCc----EEeecCCCCCCchhHHh--hhhhhccCce-----------------ecCC
Q psy12654 44 KVNQIGSVTESIQAHLLAKQN--GWG----TMVSHRSGETEDNFIAD--LVVGLSTGQI-----------------KTGA 98 (133)
Q Consensus 44 K~nQigTvTe~lea~~~a~~~--g~~----~vvS~rsGETeD~~iad--LAVgl~a~~i-----------------K~G~ 98 (133)
..|.-.+..+..++++.+++. |+. +|+ .-.|||+++|..- ++-.++...+ +-+.
T Consensus 267 ~M~R~~~~~~~~~~i~~lr~~~~~i~i~~d~Iv-GfPgET~edf~~tl~fi~~~~~~~~~~~~~sp~pGT~~~~~~~~~v 345 (434)
T PRK14330 267 LMNRRYTREEYLELIEKIRSKVPDASISSDIIV-GFPTETEEDFMETVDLVEKAQFERLNLAIYSPREGTVAWKYYKDDV 345 (434)
T ss_pred hcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEE-ECCCCCHHHHHHHHHHHHhcCCCEEeeeeccCCCCChhhhhCccCC
Confidence 344555788899999999997 443 344 4479999999764 4444443322 2222
Q ss_pred CCchhHHHHHHHHHHHHHHh
Q psy12654 99 PCRSERLAKYNQILRIEEEL 118 (133)
Q Consensus 99 p~r~Er~aKyN~LLrIeeel 118 (133)
| ..+...++.+|+++.+++
T Consensus 346 ~-~~~~~~r~~~l~~~~~~~ 364 (434)
T PRK14330 346 P-YEEKVRRMQYLLNLQKRI 364 (434)
T ss_pred C-HHHHHHHHHHHHHHHHHH
Confidence 2 345556777777777665
No 143
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=33.81 E-value=1.3e+02 Score=25.35 Aligned_cols=69 Identities=13% Similarity=0.119 Sum_probs=50.9
Q ss_pred CCeEEecCcccccC--HHHHHHHHhhccccccee-hccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCch
Q psy12654 12 EPIQIVGDDLTVTN--PKRIATAVEKKACNCLLL-KVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDN 80 (133)
Q Consensus 12 ~~iqivGDDl~vTn--~~ri~~~i~~~~~na~ll-K~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~ 80 (133)
.++.||.|.-+..+ .+++...+++...+..++ .+.+.-|++...++++.+++.+...||+=-.|-.-|.
T Consensus 27 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGs~iD~ 98 (376)
T cd08193 27 KRVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARAAGADGVIGFGGGSSMDV 98 (376)
T ss_pred CeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHHHH
Confidence 78889988753333 466777776655555433 3456678888889999999999999999988887765
No 144
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=33.71 E-value=74 Score=26.76 Aligned_cols=70 Identities=19% Similarity=0.308 Sum_probs=47.5
Q ss_pred HHHHHHHHhhcccccceeh-----------ccccccHHHHHHHHHHHHHCCCc-E---EeecCCCCCCchhHHhh--hhh
Q psy12654 26 PKRIATAVEKKACNCLLLK-----------VNQIGSVTESIQAHLLAKQNGWG-T---MVSHRSGETEDNFIADL--VVG 88 (133)
Q Consensus 26 ~~ri~~~i~~~~~na~llK-----------~nQigTvTe~lea~~~a~~~g~~-~---vvS~rsGETeD~~iadL--AVg 88 (133)
++.++. +.+-.+|-+.|- .+...|..+++++++.+++.|+. + ++-.-.|||.+++..++ ++.
T Consensus 99 ~e~l~~-l~~~G~~rvsiGvqS~~d~~L~~l~R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPgqt~e~~~~~l~~~~~ 177 (374)
T PRK05799 99 EEKLKI-LKSMGVNRLSIGLQAWQNSLLKYLGRIHTFEEFLENYKLARKLGFNNINVDLMFGLPNQTLEDWKETLEKVVE 177 (374)
T ss_pred HHHHHH-HHHcCCCEEEEECccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCHHHHHHHHHHHHh
Confidence 455554 444446555432 34455899999999999999985 2 34466799999998766 666
Q ss_pred hccCceec
Q psy12654 89 LSTGQIKT 96 (133)
Q Consensus 89 l~a~~iK~ 96 (133)
++..+|.+
T Consensus 178 l~~~~is~ 185 (374)
T PRK05799 178 LNPEHISC 185 (374)
T ss_pred cCCCEEEE
Confidence 77666644
No 145
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=33.61 E-value=89 Score=27.30 Aligned_cols=70 Identities=19% Similarity=0.261 Sum_probs=48.1
Q ss_pred HHHHHHHHhhccccccee-----------hccccccHHHHHHHHHHHHHCCC-cE---EeecCCCCCCchhHHhh--hhh
Q psy12654 26 PKRIATAVEKKACNCLLL-----------KVNQIGSVTESIQAHLLAKQNGW-GT---MVSHRSGETEDNFIADL--VVG 88 (133)
Q Consensus 26 ~~ri~~~i~~~~~na~ll-----------K~nQigTvTe~lea~~~a~~~g~-~~---vvS~rsGETeD~~iadL--AVg 88 (133)
.+.++. +.+-.+|.+.| ..+...+..+.+++++.+++.|+ .+ ++-.-.|+|.+++..++ +..
T Consensus 151 ~e~l~~-l~~aG~~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~e~~~~~l~~~~~ 229 (453)
T PRK09249 151 LEMLDA-LRELGFNRLSLGVQDFDPEVQKAVNRIQPFEFTFALVEAARELGFTSINIDLIYGLPKQTPESFARTLEKVLE 229 (453)
T ss_pred HHHHHH-HHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCHHHHHHHHHHHHh
Confidence 344433 44445666654 33566788899999999999998 33 45567899999998866 556
Q ss_pred hccCceec
Q psy12654 89 LSTGQIKT 96 (133)
Q Consensus 89 l~a~~iK~ 96 (133)
++...|-+
T Consensus 230 l~~~~i~~ 237 (453)
T PRK09249 230 LRPDRLAV 237 (453)
T ss_pred cCCCEEEE
Confidence 66555533
No 146
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=33.23 E-value=2.5e+02 Score=24.35 Aligned_cols=105 Identities=10% Similarity=0.036 Sum_probs=61.0
Q ss_pred CCeEEecCcccccCHHHHHHHHhhcccccceeh-------------ccccccHHHHHHHHHHHHHCCCcEEeecCCCCCC
Q psy12654 12 EPIQIVGDDLTVTNPKRIATAVEKKACNCLLLK-------------VNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETE 78 (133)
Q Consensus 12 ~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK-------------~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETe 78 (133)
.+|-|+|.-++.-+.+.|++.+++-..+.+++- .|.+-+--.+++-++.+-++...++++.+.++-
T Consensus 156 ~~VNlig~~~~~~D~~ei~~lL~~~Gl~~~~~~d~s~~~~~~~~~~~~~~~~~g~~~~~i~~~~~A~lniv~~~~~~~g- 234 (429)
T cd03466 156 EKINVIAGMMSPADIREIKEILREFGIEYILLPDTSETLDGPFWGEYHRLPSGGTPISEIKGMGGAKATIELGMFVDHG- 234 (429)
T ss_pred CcEEEECCCCChhHHHHHHHHHHHcCCCeEEecCccccccCCCCCCcceeCCCCCCHHHHHhhccCcEEEEEccCccch-
Confidence 568888876554455777777777665554431 122112222455555667777888887642221
Q ss_pred chhHHhhhhhhccCceecCCCCchhHHHHHHHHHHHHHHhC
Q psy12654 79 DNFIADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELG 119 (133)
Q Consensus 79 D~~iadLAVgl~a~~iK~G~p~r~Er~aKyN~LLrIeeelg 119 (133)
..+-..|-=-.+.++++...|-+-+-+.++ |.+|.+.+|
T Consensus 235 ~~~A~~L~e~~giP~~~~~~P~G~~~t~~~--l~~l~~~~g 273 (429)
T cd03466 235 LSAGSYLEEEFGIPNYRLPLPIGLRATDEF--MSLLSKLTG 273 (429)
T ss_pred HHHHHHHHHHHCCCeeecCCCcChHHHHHH--HHHHHHHHC
Confidence 122234455778888888888877777655 334445444
No 147
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=33.21 E-value=94 Score=26.19 Aligned_cols=49 Identities=14% Similarity=0.148 Sum_probs=39.9
Q ss_pred CHHHHHHHHhhcccccceehccccccHH-HHHHHHHHHHHCCCcEEeecCC
Q psy12654 25 NPKRIATAVEKKACNCLLLKVNQIGSVT-ESIQAHLLAKQNGWGTMVSHRS 74 (133)
Q Consensus 25 n~~ri~~~i~~~~~na~llK~nQigTvT-e~lea~~~a~~~g~~~vvS~rs 74 (133)
+++.++..++. .+.+++|.--=.|.+. +.+++++.+.++|..+|++.|+
T Consensus 222 ~~~~l~~~~~~-g~~GiVl~~~G~Gn~p~~~~~~l~~a~~~gi~VV~~Sq~ 271 (323)
T cd00411 222 SAEAVRAFLRA-GYKGIVLAGYGAGNVPTDLIDELEEAAERGVVVVNSTQC 271 (323)
T ss_pred CHHHHHHHHhC-CCCEEEEEeECCCCCCHHHHHHHHHHHHCCCEEEEecCC
Confidence 57777777654 4789999887777766 6689999999999999999886
No 148
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=32.75 E-value=71 Score=26.72 Aligned_cols=59 Identities=20% Similarity=0.156 Sum_probs=40.4
Q ss_pred cCCCeEEec--CcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEe
Q psy12654 10 APEPIQIVG--DDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMV 70 (133)
Q Consensus 10 ~~~~iqivG--DDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vv 70 (133)
.|.++..+. +|.+.-+++.+++++.++ ..++++ .|..|++.+.-+.+++|+++|..++.
T Consensus 91 ~G~~~v~~d~d~~~~~~d~~~le~~i~~~-tk~i~~-~~~~G~~~~~~~i~~la~~~~i~vIe 151 (375)
T PRK11706 91 RGAKIVFVDIRPDTMNIDETLIEAAITPK-TRAIVP-VHYAGVACEMDTIMALAKKHNLFVVE 151 (375)
T ss_pred cCCEEEEEecCCCcCCcCHHHHHHhcCCC-CeEEEE-eCCCCCccCHHHHHHHHHHcCCEEEE
Confidence 344444443 233455788999988764 455555 57789888888888999999986664
No 149
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=32.61 E-value=1.7e+02 Score=24.62 Aligned_cols=69 Identities=14% Similarity=0.099 Sum_probs=50.0
Q ss_pred CCeEEecCcccccC--HHHHHHHHhhccccccee-hccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCch
Q psy12654 12 EPIQIVGDDLTVTN--PKRIATAVEKKACNCLLL-KVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDN 80 (133)
Q Consensus 12 ~~iqivGDDl~vTn--~~ri~~~i~~~~~na~ll-K~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~ 80 (133)
.++.||.|.-+..+ .+++.+.+++...+..++ .+...-|+....++++.+++.+...||+=-.|-.-|.
T Consensus 25 ~~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGSviD~ 96 (370)
T cd08192 25 KRPLIVTDPGLAALGLVARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRAGGCDGVIAFGGGSALDL 96 (370)
T ss_pred CeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchHHHH
Confidence 68889988654433 466777776654444333 2444578888999999999999999999888887765
No 150
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=32.61 E-value=1.4e+02 Score=23.78 Aligned_cols=57 Identities=9% Similarity=0.012 Sum_probs=42.4
Q ss_pred cccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCC
Q psy12654 22 TVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETE 78 (133)
Q Consensus 22 ~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETe 78 (133)
+++||++.-+...+-.++++++----+-+..+.-+..+.++++|+.+++--....+.
T Consensus 86 ~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~ 142 (244)
T PRK13125 86 YVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPD 142 (244)
T ss_pred hhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCH
Confidence 588999977777888899999831112234567788889999999999988775544
No 151
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=32.51 E-value=1e+02 Score=26.22 Aligned_cols=86 Identities=14% Similarity=0.202 Sum_probs=53.7
Q ss_pred CHHHHHHHHhhcccccceehccccccHH---HHHHHHHHHHHCCCcEEeecCC--CCCC-chhHHhhhhhhccCceecCC
Q psy12654 25 NPKRIATAVEKKACNCLLLKVNQIGSVT---ESIQAHLLAKQNGWGTMVSHRS--GETE-DNFIADLVVGLSTGQIKTGA 98 (133)
Q Consensus 25 n~~ri~~~i~~~~~na~llK~nQigTvT---e~lea~~~a~~~g~~~vvS~rs--GETe-D~~iadLAVgl~a~~iK~G~ 98 (133)
+++.|+..++. .+.+++|.--=.|.+. +.+++++.+.+.|..+|++.|. |.+. ..+-+-. --..+|.|-.|.
T Consensus 222 ~~~~l~~~~~~-~~~GiVl~~~G~Gn~p~~~~~~~~l~~~~~~Gi~VV~~Sr~~~G~v~~~~Y~~g~-~l~~~G~i~~g~ 299 (335)
T PRK09461 222 SAEVVRNFLRQ-PVKALILRSYGVGNAPQNPALLQELKEASERGIVVVNLTQCMSGKVNMGGYATGN-ALAHAGVISGAD 299 (335)
T ss_pred CHHHHHHHHhC-CCCEEEEccCCCCCCCCCHHHHHHHHHHHHCCCEEEEeCCCCCCcCCccchhhhH-HHHhCCEEECCC
Confidence 46777777665 4789999887777766 6889999999999999999887 4442 1110000 012244565565
Q ss_pred CCchhHHHHHHHHH
Q psy12654 99 PCRSERLAKYNQIL 112 (133)
Q Consensus 99 p~r~Er~aKyN~LL 112 (133)
...-.-..|.--+|
T Consensus 300 lt~ekAr~kL~~~L 313 (335)
T PRK09461 300 MTVEAALTKLHYLL 313 (335)
T ss_pred CCHHHHHHHHHHHH
Confidence 54433344444443
No 152
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=32.13 E-value=1.5e+02 Score=25.84 Aligned_cols=75 Identities=13% Similarity=0.279 Sum_probs=44.3
Q ss_pred hccccccHHHHHHHHHHHHHCCCcEEee-----cCCCCCCchhHH--hhhhhhccCcee-------cCCCC--------c
Q psy12654 44 KVNQIGSVTESIQAHLLAKQNGWGTMVS-----HRSGETEDNFIA--DLVVGLSTGQIK-------TGAPC--------R 101 (133)
Q Consensus 44 K~nQigTvTe~lea~~~a~~~g~~~vvS-----~rsGETeD~~ia--dLAVgl~a~~iK-------~G~p~--------r 101 (133)
..|.-++..+.+++++.+++.+..+.++ .-.|||+++|-. |++--++...+- -|.|+ .
T Consensus 273 ~m~r~~~~~~~~~~i~~lr~~~~~i~i~t~~IvGfPgET~edf~~tl~fi~e~~~d~~~~f~ysP~pGT~a~~~~~~v~~ 352 (440)
T PRK14862 273 RMKRPASVEKTLERIKKWREICPDLTIRSTFIVGFPGETEEDFQMLLDFLKEAQLDRVGCFKYSPVEGATANDLPDQVPE 352 (440)
T ss_pred hcCCCCCHHHHHHHHHHHHHHCCCceecccEEEECCCCCHHHHHHHHHHHHHcCCCeeeeEeecCCCCCchhhCCCCCCH
Confidence 3455667888899999888864333332 336999988866 555544433221 13332 2
Q ss_pred hhHHHHHHHHHHHHHHh
Q psy12654 102 SERLAKYNQILRIEEEL 118 (133)
Q Consensus 102 ~Er~aKyN~LLrIeeel 118 (133)
.+....+.+|.++.+++
T Consensus 353 ~~~~~r~~~l~~~~~~~ 369 (440)
T PRK14862 353 EVKEERWARFMEVQQQI 369 (440)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34456677777766554
No 153
>PLN02389 biotin synthase
Probab=31.73 E-value=64 Score=28.03 Aligned_cols=35 Identities=17% Similarity=0.335 Sum_probs=28.9
Q ss_pred ccHHHHHHHHHHHHHCCCcE----EeecCCCCCCchhHHhh
Q psy12654 49 GSVTESIQAHLLAKQNGWGT----MVSHRSGETEDNFIADL 85 (133)
Q Consensus 49 gTvTe~lea~~~a~~~g~~~----vvS~rsGETeD~~iadL 85 (133)
.+..+-+++++.|++.|+.+ |+++ |||.++.+.++
T Consensus 210 ~s~e~rl~ti~~a~~~Gi~v~sg~IiGl--gEt~edrv~~l 248 (379)
T PLN02389 210 RSYDDRLETLEAVREAGISVCSGGIIGL--GEAEEDRVGLL 248 (379)
T ss_pred CCHHHHHHHHHHHHHcCCeEeEEEEECC--CCCHHHHHHHH
Confidence 57888899999999999876 6666 99988876665
No 154
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=31.17 E-value=1.2e+02 Score=21.59 Aligned_cols=71 Identities=17% Similarity=0.190 Sum_probs=48.2
Q ss_pred HHHHHHHHHHCCCcEEeecCCCCCCchhHHhhhhhhccCceecCCCCchhHHHHHHHHHHHHHHhCCcccccCccC
Q psy12654 54 SIQAHLLAKQNGWGTMVSHRSGETEDNFIADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGANAKFAGKNF 129 (133)
Q Consensus 54 ~lea~~~a~~~g~~~vvS~rsGETeD~~iadLAVgl~a~~iK~G~p~r~Er~aKyN~LLrIeeelg~~~~~~g~~~ 129 (133)
++++++.+++.|+.+++-+..-|+. -.|...+-.+-++. +++ ..+.-.-..++++|.++-+-.+.|.|--|
T Consensus 14 a~r~~ra~r~~Gi~tv~v~s~~d~~---s~~~~~ad~~~~~~-~~~-~~~~yl~~e~I~~ia~~~g~~~i~pGyg~ 84 (110)
T PF00289_consen 14 AVRIIRALRELGIETVAVNSNPDTV---STHVDMADEAYFEP-PGP-SPESYLNIEAIIDIARKEGADAIHPGYGF 84 (110)
T ss_dssp HHHHHHHHHHTTSEEEEEEEGGGTT---GHHHHHSSEEEEEE-SSS-GGGTTTSHHHHHHHHHHTTESEEESTSST
T ss_pred HHHHHHHHHHhCCcceeccCchhcc---cccccccccceecC-cch-hhhhhccHHHHhhHhhhhcCcccccccch
Confidence 8899999999999999988865553 22444444444444 233 34555556678888888777777877544
No 155
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=31.09 E-value=41 Score=28.47 Aligned_cols=32 Identities=25% Similarity=0.377 Sum_probs=25.6
Q ss_pred cccccceehccccccHHH-----HHHHHHHHHHCCCcEEe
Q psy12654 36 KACNCLLLKVNQIGSVTE-----SIQAHLLAKQNGWGTMV 70 (133)
Q Consensus 36 ~~~na~llK~nQigTvTe-----~lea~~~a~~~g~~~vv 70 (133)
+.+++++| +|||+++ .+.+++.|.+.|..+++
T Consensus 54 kia~AL~I---NIGTL~~~~~~~m~~A~~~An~~~~PvvL 90 (265)
T COG2145 54 KIADALLI---NIGTLSAERIQAMRAAIKAANESGKPVVL 90 (265)
T ss_pred HhccceEE---eeccCChHHHHHHHHHHHHHHhcCCCEEe
Confidence 36888877 6899887 66788889999887776
No 156
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=30.92 E-value=1.3e+02 Score=25.63 Aligned_cols=70 Identities=13% Similarity=0.150 Sum_probs=47.6
Q ss_pred CCCeEEecCcccc-cC--HHHHHHHHhhccccccee-hccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCch
Q psy12654 11 PEPIQIVGDDLTV-TN--PKRIATAVEKKACNCLLL-KVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDN 80 (133)
Q Consensus 11 ~~~iqivGDDl~v-Tn--~~ri~~~i~~~~~na~ll-K~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~ 80 (133)
+.++.||.|.-.. .+ .+++...+++...+..++ .+..--+++...++++.+++.+...||+--.|-.-|.
T Consensus 28 ~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~ 101 (382)
T cd08187 28 GKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEKVDFILAVGGGSVIDS 101 (382)
T ss_pred CCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCChHHHHH
Confidence 6788888876333 23 266777776655554433 3444557777788888899999999988887776654
No 157
>smart00642 Aamy Alpha-amylase domain.
Probab=30.56 E-value=64 Score=24.52 Aligned_cols=29 Identities=17% Similarity=0.270 Sum_probs=24.5
Q ss_pred ccccHHHHHHHHHHHHHCCCcEEe----ecCCC
Q psy12654 47 QIGSVTESIQAHLLAKQNGWGTMV----SHRSG 75 (133)
Q Consensus 47 QigTvTe~lea~~~a~~~g~~~vv----S~rsG 75 (133)
..||..|.-+.++.|+++|+.+|+ .|.+.
T Consensus 65 ~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 65 RFGTMEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred ccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 568999999999999999999875 55554
No 158
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=30.53 E-value=2.3e+02 Score=22.00 Aligned_cols=64 Identities=14% Similarity=0.014 Sum_probs=49.9
Q ss_pred hhcCCCeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCC----CcEEeecCC
Q psy12654 8 DFAPEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNG----WGTMVSHRS 74 (133)
Q Consensus 8 ~~~~~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g----~~~vvS~rs 74 (133)
...|-++.-.|-|+ -++.+-+.+++..+..+.|......++...-+.++..++.| ..++++.+.
T Consensus 109 ~~~G~~vi~LG~~v---p~e~~v~~~~~~~pd~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~v~i~vGG~~ 176 (197)
T TIGR02370 109 RANGFDVIDLGRDV---PIDTVVEKVKKEKPLMLTGSALMTTTMYGQKDINDKLKEEGYRDSVKFMVGGAP 176 (197)
T ss_pred HhCCcEEEECCCCC---CHHHHHHHHHHcCCCEEEEccccccCHHHHHHHHHHHHHcCCCCCCEEEEEChh
Confidence 33566776678888 45788888999999999999888888888888888888885 457777663
No 159
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=30.45 E-value=84 Score=26.01 Aligned_cols=51 Identities=6% Similarity=-0.039 Sum_probs=38.3
Q ss_pred cccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeec
Q psy12654 22 TVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSH 72 (133)
Q Consensus 22 ~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~ 72 (133)
+.-+++.+.+.+.+.....+++-.+..++..+.-+.+++++++|..+++=.
T Consensus 146 ~~id~~~l~~~i~~~~~~~v~~~~~~~~~~~~~~~I~~l~~~~~~~li~D~ 196 (402)
T cd00378 146 GLIDYDALEKMALEFKPKLIVAGASAYPRPIDFKRFREIADEVGAYLLVDM 196 (402)
T ss_pred CCcCHHHHHHHHHhCCCCEEEecCcccCCCcCHHHHHHHHHhcCCEEEEEc
Confidence 445789999988654556666656667887788888999999998776644
No 160
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=30.30 E-value=1.8e+02 Score=24.86 Aligned_cols=69 Identities=16% Similarity=0.201 Sum_probs=47.7
Q ss_pred CCeEEecCcccccC--HHHHHHHHhhccccccee-hccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCch
Q psy12654 12 EPIQIVGDDLTVTN--PKRIATAVEKKACNCLLL-KVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDN 80 (133)
Q Consensus 12 ~~iqivGDDl~vTn--~~ri~~~i~~~~~na~ll-K~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~ 80 (133)
.++.||.|.-...+ .+++...+++......+. .+..--|++..-++++.+++++...||+--.|-+-|.
T Consensus 32 ~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~IiaiGGGS~iD~ 103 (383)
T PRK09860 32 TRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGGGSPHDC 103 (383)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCCchHHHH
Confidence 68888887643322 356777776554444333 2334468888888899999999999998888877765
No 161
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=30.24 E-value=1.9e+02 Score=24.07 Aligned_cols=70 Identities=10% Similarity=0.077 Sum_probs=48.2
Q ss_pred CCCeEEecCcccccC--HHHHHHHHhhccccccee-hccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchh
Q psy12654 11 PEPIQIVGDDLTVTN--PKRIATAVEKKACNCLLL-KVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNF 81 (133)
Q Consensus 11 ~~~iqivGDDl~vTn--~~ri~~~i~~~~~na~ll-K~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~ 81 (133)
+.++.||.|.-...+ .+++...+++. .+..+. .+-...|+....++++.+++.++..||+--.|-+-|..
T Consensus 22 ~~~~lvv~~~~~~~~g~~~~v~~~l~~~-~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IiaiGGGs~~D~a 94 (332)
T cd08180 22 NKRVLIVTDPFMVKSGMLDKVTDHLDSS-IEVEIFSDVVPDPPIEVVAKGIKKFLDFKPDIVIALGGGSAIDAA 94 (332)
T ss_pred CCeEEEEeCchhhhCccHHHHHHHHHhc-CcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEECCchHHHHH
Confidence 478888887643333 34566667655 444333 22333578888888899999999999998888887653
No 162
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=30.22 E-value=1.2e+02 Score=22.93 Aligned_cols=44 Identities=14% Similarity=0.150 Sum_probs=33.1
Q ss_pred HHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCC
Q psy12654 27 KRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRS 74 (133)
Q Consensus 27 ~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rs 74 (133)
+.+++++.++ ++++++-|..-....+ .++.+++.|+.++.-.+.
T Consensus 46 ~~i~~~i~~~-~d~Iiv~~~~~~~~~~---~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 46 EQIEQAISQG-VDGIIVSPVDPDSLAP---FLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp HHHHHHHHTT-ESEEEEESSSTTTTHH---HHHHHHHTTSEEEEESST
T ss_pred HHHHHHHHhc-CCEEEecCCCHHHHHH---HHHHHhhcCceEEEEecc
Confidence 3466777666 9999998887755554 455588899988888777
No 163
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=30.20 E-value=1.2e+02 Score=27.05 Aligned_cols=58 Identities=16% Similarity=0.138 Sum_probs=40.6
Q ss_pred cCcccccCHHHHHHHHhhcccccc---eehcc--ccccHHHHHHHHHHHHHCCCcEEeecCCC
Q psy12654 18 GDDLTVTNPKRIATAVEKKACNCL---LLKVN--QIGSVTESIQAHLLAKQNGWGTMVSHRSG 75 (133)
Q Consensus 18 GDDl~vTn~~ri~~~i~~~~~na~---llK~n--QigTvTe~lea~~~a~~~g~~~vvS~rsG 75 (133)
-++-|..+++.|+++++++...+. +.-|+ ..+.+-+.-+..++|+++|.-+++=.--|
T Consensus 183 d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg 245 (444)
T TIGR03531 183 DGDELTTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIVNNAYG 245 (444)
T ss_pred cCcCCCcCHHHHHHHHHhccCCCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEEECcCc
Confidence 356788899999999986431222 22333 22367788888999999999888865554
No 164
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=30.11 E-value=1.2e+02 Score=26.35 Aligned_cols=49 Identities=16% Similarity=0.126 Sum_probs=41.1
Q ss_pred ccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCC-cEEeecC
Q psy12654 23 VTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGW-GTMVSHR 73 (133)
Q Consensus 23 vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~-~~vvS~r 73 (133)
++|-..|..+-. .-..++||=.+..|+.|.+.+++...+.|- .+++.||
T Consensus 195 ~~n~~LL~~va~--t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn~~viL~er 244 (352)
T PRK13396 195 MQNFSLLKKVGA--QDKPVLLKRGMAATIDEWLMAAEYILAAGNPNVILCER 244 (352)
T ss_pred ccCHHHHHHHHc--cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEec
Confidence 577777766543 356899999999999999999999998887 6999999
No 165
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=30.10 E-value=1.7e+02 Score=24.64 Aligned_cols=71 Identities=17% Similarity=0.157 Sum_probs=51.0
Q ss_pred cCCCeEEecCccc-ccC--HHHHHHHHhhccccccee-hccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCch
Q psy12654 10 APEPIQIVGDDLT-VTN--PKRIATAVEKKACNCLLL-KVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDN 80 (133)
Q Consensus 10 ~~~~iqivGDDl~-vTn--~~ri~~~i~~~~~na~ll-K~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~ 80 (133)
.|.++.||.|.-. ..+ .+++...+++......+. .+-..-|+....++++.+++.+...||+=-.|-.-|.
T Consensus 24 ~g~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGSviD~ 98 (357)
T cd08181 24 LGKRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFNADFVIGIGGGSPLDA 98 (357)
T ss_pred cCCEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHHHH
Confidence 3578989988754 322 266777777655554443 2334568888999999999999999999888877654
No 166
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=30.03 E-value=86 Score=26.17 Aligned_cols=55 Identities=16% Similarity=0.162 Sum_probs=37.4
Q ss_pred ccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHhhhhhhccCceec
Q psy12654 37 ACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIADLVVGLSTGQIKT 96 (133)
Q Consensus 37 ~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iadLAVgl~a~~iK~ 96 (133)
.-+.++|=.+.-|+-.|++++++.|++.|..+|.-...| -++.+|=.-+...|..
T Consensus 77 ~~~dlvI~iS~SG~T~e~~~a~~~a~~~ga~vIaIT~~~-----~L~~~a~~~~~~~i~i 131 (337)
T PRK08674 77 DEKTLVIAVSYSGNTEETLSAVEQALKRGAKIIAITSGG-----KLKEMAKEHGLPVIIV 131 (337)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHCCCeEEEECCCc-----hHHHHHHhcCCeEEEe
Confidence 345667778999999999999999999999766444322 2666544323334433
No 167
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=29.58 E-value=94 Score=26.50 Aligned_cols=57 Identities=23% Similarity=0.232 Sum_probs=41.8
Q ss_pred cceehccccccHHHHHHHHHHHHHCCCcEE---eecCCCCCCchhHHhh--hhhhccCceec
Q psy12654 40 CLLLKVNQIGSVTESIQAHLLAKQNGWGTM---VSHRSGETEDNFIADL--VVGLSTGQIKT 96 (133)
Q Consensus 40 a~llK~nQigTvTe~lea~~~a~~~g~~~v---vS~rsGETeD~~iadL--AVgl~a~~iK~ 96 (133)
.+|=+.|..-|+.+++++++.+++.+..+- +-.-.|+|.+++..|+ ++.++..+|.+
T Consensus 128 ~vL~~l~R~~~~~~~~~ai~~~~~~~~~v~~dli~GlPgqt~~~~~~~l~~~~~l~p~~is~ 189 (380)
T PRK09057 128 ADLRFLGRLHSVAEALAAIDLAREIFPRVSFDLIYARPGQTLAAWRAELKEALSLAADHLSL 189 (380)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHhCccEEEEeecCCCCCCHHHHHHHHHHHHhcCCCeEEe
Confidence 334456788899999999999999866544 3566799999998887 44566665544
No 168
>TIGR03560 F420_Rv1855c probable F420-dependent oxidoreductase, Rv1855c family. Coenzyme F420 has a limited phylogenetic distribution, including methanogenic archaea, Mycobacterium tuberculosis and related species, Colwellia psychrerythraea 34H, Rhodopseudomonas palustris HaA2, and others. Partial phylogenetic profiling identifies protein subfamilies, within the larger family called luciferase-like monooxygenanases (pfam00296), that appear only in F420-positive genomes and are likely to be F420-dependent. This model describes one such subfamily, exemplified by Rv1855c from Mycobacterium tuberculosis.
Probab=29.54 E-value=1.6e+02 Score=23.23 Aligned_cols=55 Identities=15% Similarity=0.227 Sum_probs=40.2
Q ss_pred eehccccccHHHHHHHHHHHHHCCCcEEeecCC-------CC----CCchhHHhhhhhhccCceecCC
Q psy12654 42 LLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRS-------GE----TEDNFIADLVVGLSTGQIKTGA 98 (133)
Q Consensus 42 llK~nQigTvTe~lea~~~a~~~g~~~vvS~rs-------GE----TeD~~iadLAVgl~a~~iK~G~ 98 (133)
-+-|+| +.-+.++.+++|.+.|+..+.-.-. |. .-|.|+.--+++-.+..||+|.
T Consensus 5 ~~~~~~--~~~~~~~~a~~AE~~Gfd~vw~~eh~~~~~~~~~~~~p~~d~~~~la~~a~~T~ri~lg~ 70 (227)
T TIGR03560 5 FTEPQQ--LYPDLLAVARAAEDAGFDALFRSDHFLQMPMVGPPEGPTLEAWTTLAGLARETSRIRLGT 70 (227)
T ss_pred ecCCCC--CHHHHHHHHHHHHHcCCCEEEEchhccccccCCCCCCCcccHHHHHHHHHHhcCeeEEEE
Confidence 345777 7999999999999999987764311 11 1267777778888888888865
No 169
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=29.51 E-value=1.1e+02 Score=26.69 Aligned_cols=70 Identities=19% Similarity=0.273 Sum_probs=49.4
Q ss_pred HHHHHHHHhhcccccceeh-----------ccccccHHHHHHHHHHHHHCCCc-E---EeecCCCCCCchhHHhh--hhh
Q psy12654 26 PKRIATAVEKKACNCLLLK-----------VNQIGSVTESIQAHLLAKQNGWG-T---MVSHRSGETEDNFIADL--VVG 88 (133)
Q Consensus 26 ~~ri~~~i~~~~~na~llK-----------~nQigTvTe~lea~~~a~~~g~~-~---vvS~rsGETeD~~iadL--AVg 88 (133)
++.++. +.+-.+|.+.|- .+...+..+.+++++.+++.|+. + ++-.-.|+|.+++..++ +..
T Consensus 151 ~e~l~~-lk~~G~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~ 229 (455)
T TIGR00538 151 KDVIDA-LRDEGFNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAREAGFTSINIDLIYGLPKQTKESFAKTLEKVAE 229 (455)
T ss_pred HHHHHH-HHHcCCCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCCCCHHHHHHHHHHHHh
Confidence 444444 444456666653 35567888999999999999984 2 45567899999998866 666
Q ss_pred hccCceec
Q psy12654 89 LSTGQIKT 96 (133)
Q Consensus 89 l~a~~iK~ 96 (133)
++..+|-+
T Consensus 230 l~~~~is~ 237 (455)
T TIGR00538 230 LNPDRLAV 237 (455)
T ss_pred cCCCEEEE
Confidence 77666543
No 170
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=28.90 E-value=1.3e+02 Score=23.77 Aligned_cols=69 Identities=22% Similarity=0.209 Sum_probs=44.1
Q ss_pred HHHHHHHHhhcccccceehccccccHH----------H-HHHHHHHHHHCCCcEEeecC-----CCCC-------CchhH
Q psy12654 26 PKRIATAVEKKACNCLLLKVNQIGSVT----------E-SIQAHLLAKQNGWGTMVSHR-----SGET-------EDNFI 82 (133)
Q Consensus 26 ~~ri~~~i~~~~~na~llK~nQigTvT----------e-~lea~~~a~~~g~~~vvS~r-----sGET-------eD~~i 82 (133)
...+...+.+...++..+.+.+.+.++ + ..+.++..-++|.-+|++.- .|++ .|...
T Consensus 76 ~~~~~~~l~~~g~~a~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~ll~~g~ipVi~g~~~~~~~g~~~~l~~g~~D~~A 155 (239)
T cd04246 76 AALLAMALNRLGIKAISLTGWQAGILTDDHHGNARIIDIDPKRILEALEEGDVVVVAGFQGVNEDGEITTLGRGGSDTTA 155 (239)
T ss_pred HHHHHHHHHhCCCCeEEeccccCCEEecCCCCceeechhhHHHHHHHHhcCCEEEEcCccccCCCCCEEecCCCChHHHH
Confidence 334555666667777666665543332 1 33566666778887888543 3332 58888
Q ss_pred HhhhhhhccCce
Q psy12654 83 ADLVVGLSTGQI 94 (133)
Q Consensus 83 adLAVgl~a~~i 94 (133)
+.+|..+++..+
T Consensus 156 ~~lA~~l~A~~l 167 (239)
T cd04246 156 VALAAALKADRC 167 (239)
T ss_pred HHHHHHcCCCEE
Confidence 899999999855
No 171
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=28.89 E-value=74 Score=26.87 Aligned_cols=34 Identities=24% Similarity=0.270 Sum_probs=26.1
Q ss_pred cHHHHHHHHHHHHHCCCcE----EeecCCCCCCchhHHhh
Q psy12654 50 SVTESIQAHLLAKQNGWGT----MVSHRSGETEDNFIADL 85 (133)
Q Consensus 50 TvTe~lea~~~a~~~g~~~----vvS~rsGETeD~~iadL 85 (133)
+..+.+++++.|++.|+.+ |+++ |||.++.+-|+
T Consensus 186 ~~~~~l~~i~~a~~~Gi~~~sg~i~Gl--gEt~edrv~~l 223 (351)
T TIGR03700 186 SAERWLEIHRTAHELGLKTNATMLYGH--IETPAHRVDHM 223 (351)
T ss_pred CHHHHHHHHHHHHHcCCCcceEEEeeC--CCCHHHHHHHH
Confidence 4556789999999999864 5665 89987766655
No 172
>TIGR03559 F420_Rv3520c probable F420-dependent oxidoreductase, Rv3520c family. Members of this protein family are predicted to be oxidoreductases dependent on coenzyme F420. The family includes a single member in Mycobacterium tuberculosis (Rv3520c/MT3621) but four in Mycobacterium smegmatis. Prediction that this family is F420-dependent is based primarily on Partial Phylogenetic Profiling vs. F420 biosynthesis.
Probab=28.75 E-value=1.4e+02 Score=24.95 Aligned_cols=47 Identities=15% Similarity=0.211 Sum_probs=32.4
Q ss_pred cHHHHHHHHHHHHHCCCcEE-eecCCCCCCchhHHhhhhhhccCceecCC
Q psy12654 50 SVTESIQAHLLAKQNGWGTM-VSHRSGETEDNFIADLVVGLSTGQIKTGA 98 (133)
Q Consensus 50 TvTe~lea~~~a~~~g~~~v-vS~rsGETeD~~iadLAVgl~a~~iK~G~ 98 (133)
++.+.++.++.|.+.||..+ ++.+.+ .|.+..=-+++-.+..|++|.
T Consensus 11 ~~~~~~~~a~~AE~~Gfd~~w~~eh~~--~d~~~~laa~a~~T~ri~lgt 58 (325)
T TIGR03559 11 PPRNAVDLVAAAEKAGLDSVWVAEAYG--FDAVTPLGYLAARTSRVRLGT 58 (325)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccccc--cCHHHHHHHHHHhCCceeEEe
Confidence 78999999999999999854 444332 355554445566666676664
No 173
>cd01096 Alkanal_monooxygenase Alkanal monooxygenase are flavin monoxygenases. Molecular oxygen is activated by reaction with reduced flavin mononucleotide (FMNH2) and reacts with an aldehyde to yield the carboxylic acid, oxidized flavin (FMN) and a blue-green light. Bacterial luciferases are heterodimers made of alpha and beta subunits which are homologous. The single activer center is on the alpha subunit. The alpha subunit has a stretch of 30 amino acid residues that is not present in the beta subunit. The beta subunit does not contain the active site and is required for the formation of the fully active heterodimer. The beta subunit does not contribute anything directly to the active site. Its role is probably to stabilize the high quantum yield conformation of the alpha subunit through interactionbs across the subunit interface.
Probab=28.68 E-value=1.3e+02 Score=24.71 Aligned_cols=50 Identities=14% Similarity=0.199 Sum_probs=35.0
Q ss_pred ccHHHHHHHHHHHHHCCCc-EEee-cCCCC---CCchhHHhhhhhhccCceecCC
Q psy12654 49 GSVTESIQAHLLAKQNGWG-TMVS-HRSGE---TEDNFIADLVVGLSTGQIKTGA 98 (133)
Q Consensus 49 gTvTe~lea~~~a~~~g~~-~vvS-~rsGE---TeD~~iadLAVgl~a~~iK~G~ 98 (133)
....++++.+++|.+.||. +.++ |...+ +.+.++.=-+++-.+..||+|.
T Consensus 19 ~~~~~~~~~a~~Ae~lGfd~~w~~Ehh~~~~~~~~~p~~~la~lA~~T~rI~lgt 73 (315)
T cd01096 19 EVLDRMVDTGVLVDKLNFDTALVLEHHFSENGIVGAPLTAAAFLLGLTERLNVGS 73 (315)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEecccccCCCCCCCCHHHHHHHHHHhcCEeEeee
Confidence 4567888999999999998 4455 33322 3355555556777888888874
No 174
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=28.67 E-value=1.9e+02 Score=25.33 Aligned_cols=98 Identities=12% Similarity=0.076 Sum_probs=54.5
Q ss_pred CCCeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHhhhhhhc
Q psy12654 11 PEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIADLVVGLS 90 (133)
Q Consensus 11 ~~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iadLAVgl~ 90 (133)
...|-|+|+.....+...|++.+++-. |++|..-+--.+++-++.+-+....++++++++.- +-.-|---.|
T Consensus 197 ~~~VNiiG~~~~~~d~~el~~lL~~~G-----l~v~~~~~~~~s~eei~~~~~A~lniv~~~~~~~~---~a~~L~e~~G 268 (456)
T TIGR01283 197 VHDINLIGEFNVAGEFWHVKPLLEKLG-----IRVLATITGDSRYAEVQTAHRAKLNMVQCSKSMIN---LARKMEEKYG 268 (456)
T ss_pred CCcEEEEcCCCCcccHHHHHHHHHHcC-----CeEEEEeCCCCcHHHHHhcccCcEEEEECHhHHHH---HHHHHHHHcC
Confidence 357999997665555666777776543 33332222223455566667777777777665511 2222334557
Q ss_pred cCceecCCCCchhHHHHHHHHHHHHHHhC
Q psy12654 91 TGQIKTGAPCRSERLAKYNQILRIEEELG 119 (133)
Q Consensus 91 a~~iK~G~p~r~Er~aKyN~LLrIeeelg 119 (133)
.++++ +.|-+-+-++++ |-+|.+.+|
T Consensus 269 iP~~~-~~~~G~~~T~~~--L~~Ia~~lg 294 (456)
T TIGR01283 269 IPYFE-GSFYGIEDTSKA--LRDIADLFG 294 (456)
T ss_pred CCEEe-cCCCcHHHHHHH--HHHHHHHhC
Confidence 77777 566665555443 333444444
No 175
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=28.27 E-value=1e+02 Score=24.70 Aligned_cols=36 Identities=19% Similarity=0.208 Sum_probs=27.9
Q ss_pred cccHHHHHHHHHHHHHCCCcE----EeecCCCCCCchhHHhh
Q psy12654 48 IGSVTESIQAHLLAKQNGWGT----MVSHRSGETEDNFIADL 85 (133)
Q Consensus 48 igTvTe~lea~~~a~~~g~~~----vvS~rsGETeD~~iadL 85 (133)
-.+..+.+++++.++++|+.+ |+.. |||.++++..+
T Consensus 154 ~~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl--~et~~d~~~~~ 193 (296)
T TIGR00433 154 THTYDDRVDTLENAKKAGLKVCSGGIFGL--GETVEDRIGLA 193 (296)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEeEEEeC--CCCHHHHHHHH
Confidence 357888999999999999986 4554 88877776544
No 176
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=28.24 E-value=97 Score=22.95 Aligned_cols=50 Identities=10% Similarity=0.175 Sum_probs=33.2
Q ss_pred HHHHHHHHhhccccccee--h--------ccccccHH-----H-HHHHHHHHHHCCCcEEeecCCC
Q psy12654 26 PKRIATAVEKKACNCLLL--K--------VNQIGSVT-----E-SIQAHLLAKQNGWGTMVSHRSG 75 (133)
Q Consensus 26 ~~ri~~~i~~~~~na~ll--K--------~nQigTvT-----e-~lea~~~a~~~g~~~vvS~rsG 75 (133)
|+++...+++-.+|+++| | |++++... + .-|.++.|++.|+.+++-..-+
T Consensus 2 ~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 2 PEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred HHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEeee
Confidence 566666677777777777 4 33333221 1 2466777999999999877766
No 177
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=28.18 E-value=1e+02 Score=26.51 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=34.3
Q ss_pred HHHHHHHhhcccccceehc--c----ccccHHHHHHHHHHHHHCCCcEEeecCCC
Q psy12654 27 KRIATAVEKKACNCLLLKV--N----QIGSVTESIQAHLLAKQNGWGTMVSHRSG 75 (133)
Q Consensus 27 ~ri~~~i~~~~~na~llK~--n----QigTvTe~lea~~~a~~~g~~~vvS~rsG 75 (133)
+.+-+.+.+...|++=||+ | -.-.+..+++.+|.|+++|+.+++--.-.
T Consensus 27 ~d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYS 81 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYS 81 (332)
T ss_dssp --HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SS
T ss_pred CCHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeeccc
Confidence 3455567788999999997 2 34478899999999999999999975543
No 178
>COG2006 Uncharacterized conserved protein [Function unknown]
Probab=28.15 E-value=2e+02 Score=24.73 Aligned_cols=60 Identities=23% Similarity=0.285 Sum_probs=38.7
Q ss_pred ccccceehccccc---------cHHHHHH-HHHHHHHCCCcEEeecCCC--CCCchh----HHhhhhhhccCceec
Q psy12654 37 ACNCLLLKVNQIG---------SVTESIQ-AHLLAKQNGWGTMVSHRSG--ETEDNF----IADLVVGLSTGQIKT 96 (133)
Q Consensus 37 ~~na~llK~nQig---------TvTe~le-a~~~a~~~g~~~vvS~rsG--ETeD~~----iadLAVgl~a~~iK~ 96 (133)
..+.+|||||-.. |=-|.+. +++.++++|-.++|..++| .|+.-+ |=|+|=.++..-+-+
T Consensus 36 ~G~~VlLKPN~lta~ppe~~~tThPevv~Av~~~v~e~g~ep~vgd~pg~~st~~vlk~~Gi~dla~~~~~~iv~F 111 (293)
T COG2006 36 PGDRVLLKPNLLTADPPEAPCTTHPEVVAAVAEVVKEAGGEPVVGDSPGFGSTSGVLKTTGILDLAEALGLEIVNF 111 (293)
T ss_pred CCCEEEecCccccCCCCCCCCccCHHHHHHHHHHHHHhCCcceEecCCCCccHHHHHHHhCHHHHHHHcCCceeee
Confidence 4899999998432 3334444 5688999999999999887 333222 225555555555444
No 179
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=28.06 E-value=1.9e+02 Score=24.63 Aligned_cols=70 Identities=13% Similarity=0.143 Sum_probs=48.9
Q ss_pred CCeEEecCcccccC--HHHHHHHHhhccccccee-hccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchh
Q psy12654 12 EPIQIVGDDLTVTN--PKRIATAVEKKACNCLLL-KVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNF 81 (133)
Q Consensus 12 ~~iqivGDDl~vTn--~~ri~~~i~~~~~na~ll-K~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~ 81 (133)
.++.||.|.-...+ .+++...+++......++ .+-..-|++...++++.+++.+...||+--.|-.-|..
T Consensus 30 ~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiaiGGGSviD~a 102 (379)
T TIGR02638 30 KKALVVTDKDLIKFGVADKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKASGADYLIAIGGGSPIDTA 102 (379)
T ss_pred CEEEEEcCcchhhccchHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCChHHHHHH
Confidence 68889988654443 356777776654444443 22334577888888999999999999988888777654
No 180
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=27.88 E-value=1.5e+02 Score=20.02 Aligned_cols=45 Identities=22% Similarity=0.192 Sum_probs=25.0
Q ss_pred HHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeec
Q psy12654 26 PKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSH 72 (133)
Q Consensus 26 ~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~ 72 (133)
.+.+.++++.+. +-++=||==. |+.|+.+..++++++|..++|.|
T Consensus 76 ~~~~~~~l~~g~-~v~~EKP~~~-~~~~~~~l~~~a~~~~~~~~Vg~ 120 (120)
T PF01408_consen 76 AEIAKKALEAGK-HVLVEKPLAL-TLEEAEELVEAAKEKGVKVMVGY 120 (120)
T ss_dssp HHHHHHHHHTTS-EEEEESSSSS-SHHHHHHHHHHHHHHTSCEEEE-
T ss_pred HHHHHHHHHcCC-EEEEEcCCcC-CHHHHHHHHHHHHHhCCEEEEeC
Confidence 344555555444 4444454333 66666677777777776666654
No 181
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=27.86 E-value=1.6e+02 Score=25.18 Aligned_cols=73 Identities=16% Similarity=0.195 Sum_probs=48.5
Q ss_pred cccCHHHHHHHHhhccccccee--hccc-------ccc----HHHHHHHHHHHHHCCCcEEeec-CCCCCCchhHHhh--
Q psy12654 22 TVTNPKRIATAVEKKACNCLLL--KVNQ-------IGS----VTESIQAHLLAKQNGWGTMVSH-RSGETEDNFIADL-- 85 (133)
Q Consensus 22 ~vTn~~ri~~~i~~~~~na~ll--K~nQ-------igT----vTe~lea~~~a~~~g~~~vvS~-rsGETeD~~iadL-- 85 (133)
...|++-++++++-+. ..+-+ ..|. -.| +..+.+++++|++.|+.+.++. -++.++.+++.++
T Consensus 70 ~r~~~~di~~a~~~g~-~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~ 148 (363)
T TIGR02090 70 ARALKKDIDKAIDCGV-DSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFK 148 (363)
T ss_pred cccCHHHHHHHHHcCc-CEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHH
Confidence 3468888998877652 22222 2221 123 4566689999999999999885 4466778888876
Q ss_pred -hhhhccCcee
Q psy12654 86 -VVGLSTGQIK 95 (133)
Q Consensus 86 -AVgl~a~~iK 95 (133)
++..++..|-
T Consensus 149 ~~~~~g~~~i~ 159 (363)
T TIGR02090 149 RAEEAGADRIN 159 (363)
T ss_pred HHHhCCCCEEE
Confidence 4556666663
No 182
>PF09806 CDK2AP: Cyclin-dependent kinase 2-associated protein; InterPro: IPR019187 Members of this family of proteins are cell-growth suppressors, associating with and influencing the biological activities of important cell cycle regulators in the S phase including monomeric non-phosphorylated cyclin-dependent kinase 2 (CDK2) and DNA polymerase alpha/primase. An association between mutations in the gene coding for this protein and oral cancer has been described. ; PDB: 2KW6_A.
Probab=27.79 E-value=38 Score=27.34 Aligned_cols=23 Identities=39% Similarity=0.782 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHhCC--cccccCc
Q psy12654 105 LAKYNQILRIEEELGA--NAKFAGK 127 (133)
Q Consensus 105 ~aKyN~LLrIeeelg~--~~~~~g~ 127 (133)
..||.+||.+=||+|. ++.|+|.
T Consensus 138 ~~kY~~LL~viee~g~~irpty~g~ 162 (193)
T PF09806_consen 138 VSKYAQLLAVIEEMGKDIRPTYAGS 162 (193)
T ss_dssp -SHHHHHHHHHHHHCCCHHHHHCT-
T ss_pred hhHHHHHHHHHHHHCCCcCcccccC
Confidence 4999999999999987 5567774
No 183
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=27.73 E-value=1.9e+02 Score=20.53 Aligned_cols=57 Identities=11% Similarity=0.155 Sum_probs=40.4
Q ss_pred CCCeEEecCccc---ccCHHHHHHHHhhc--ccccceehccccccHHHHHHHHHHHHHCCCc
Q psy12654 11 PEPIQIVGDDLT---VTNPKRIATAVEKK--ACNCLLLKVNQIGSVTESIQAHLLAKQNGWG 67 (133)
Q Consensus 11 ~~~iqivGDDl~---vTn~~ri~~~i~~~--~~na~llK~nQigTvTe~lea~~~a~~~g~~ 67 (133)
...+.+.|.... .+..+..++...+. ....+++-+....|..++..+.+++++.+|.
T Consensus 35 ~~~ii~sGg~~~~~~~~ea~~m~~~l~~~gv~~~~I~~e~~s~~T~ena~~~~~~~~~~~~~ 96 (150)
T cd06259 35 APKLIVSGGQGPGEGYSEAEAMARYLIELGVPAEAILLEDRSTNTYENARFSAELLRERGIR 96 (150)
T ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHcCCCHHHeeecCCCCCHHHHHHHHHHHHHhcCCC
Confidence 345666776553 34455555544444 3567889999999999999999999999853
No 184
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=27.66 E-value=2e+02 Score=24.41 Aligned_cols=71 Identities=10% Similarity=0.034 Sum_probs=50.8
Q ss_pred CCCeEEecCcc-cccCH--HHHHHHHhhcccccceeh-ccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchh
Q psy12654 11 PEPIQIVGDDL-TVTNP--KRIATAVEKKACNCLLLK-VNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNF 81 (133)
Q Consensus 11 ~~~iqivGDDl-~vTn~--~ri~~~i~~~~~na~llK-~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~ 81 (133)
+.++.||.|.- +-.+. +++...+++...+..++. +-..-++....++++.+++++...||+--.|-+-|..
T Consensus 23 ~~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGSviD~A 97 (375)
T cd08179 23 GKKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREFEPDWIIALGGGSPIDAA 97 (375)
T ss_pred CCeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccHHHHH
Confidence 46788887754 33233 567777766555555542 3445788888899999999999999998888887654
No 185
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=27.35 E-value=2.5e+02 Score=24.69 Aligned_cols=70 Identities=16% Similarity=0.139 Sum_probs=56.8
Q ss_pred CCCeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHH
Q psy12654 11 PEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIA 83 (133)
Q Consensus 11 ~~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~ia 83 (133)
+..+-+|+|--|= + +++-..-+..+.++=|.|-+||.-...-+.++.|+++|..+=+.-.+|--+..++.
T Consensus 70 ~~~iPlVADIHFd--~-~lAl~a~~~g~dkiRINPGNig~~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~ 139 (346)
T TIGR00612 70 GTNVPLVADIHFD--Y-RLAALAMAKGVAKVRINPGNIGFRERVRDVVEKARDHGKAMRIGVNHGSLERRLLE 139 (346)
T ss_pred CCCCCEEEeeCCC--c-HHHHHHHHhccCeEEECCCCCCCHHHHHHHHHHHHHCCCCEEEecCCCCCcHHHHH
Confidence 4568899987663 2 34433445678899999999999999999999999999999999999988876665
No 186
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=27.21 E-value=2.1e+02 Score=24.30 Aligned_cols=70 Identities=16% Similarity=0.227 Sum_probs=49.1
Q ss_pred CCeEEecCcccccC--HHHHHHHHhhcccccceeh-ccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchh
Q psy12654 12 EPIQIVGDDLTVTN--PKRIATAVEKKACNCLLLK-VNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNF 81 (133)
Q Consensus 12 ~~iqivGDDl~vTn--~~ri~~~i~~~~~na~llK-~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~ 81 (133)
.++.||.|.-...+ .+++.+.+++...+..++. +...-+.....++++.+++.+...||+=-.|-.-|..
T Consensus 29 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGsviD~A 101 (377)
T cd08188 29 KKVLLVSDPGVIKAGWVDRVIESLEEAGLEYVVFSDVSPNPRDEEVMAGAELYLENGCDVIIAVGGGSPIDCA 101 (377)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHH
Confidence 68888888654443 4667777766555544442 3344577778888889999999999988888777654
No 187
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=26.99 E-value=83 Score=25.09 Aligned_cols=34 Identities=12% Similarity=0.217 Sum_probs=29.0
Q ss_pred HHHHHhhcccccceehccccccHHHHHHHHHHHH
Q psy12654 29 IATAVEKKACNCLLLKVNQIGSVTESIQAHLLAK 62 (133)
Q Consensus 29 i~~~i~~~~~na~llK~nQigTvTe~lea~~~a~ 62 (133)
.+|..--+.++++++=|--+||+.|.+++..+.|
T Consensus 102 ~Rk~~~~~~ada~V~~pGG~GTleEl~e~lt~~q 135 (205)
T COG1611 102 ERKRAMVRSADAFIVLPGGFGTLEELFEALTLGQ 135 (205)
T ss_pred HHHHHHHHhCCEEEEeCCCcchHHHHHHHHHHhh
Confidence 3444555679999999999999999999999988
No 188
>PF13684 Dak1_2: Dihydroxyacetone kinase family
Probab=26.85 E-value=2.5e+02 Score=23.67 Aligned_cols=102 Identities=16% Similarity=0.176 Sum_probs=62.2
Q ss_pred hhhhcCCCeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCC-----------
Q psy12654 6 LNDFAPEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRS----------- 74 (133)
Q Consensus 6 ~~~~~~~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rs----------- 74 (133)
+-+.+|....|-|+.----..+.|.+++++-.+.-++|=||.--.+-.+-++.++++... -.+|..+|
T Consensus 111 lf~~~Gv~~vi~ggqt~nPS~~dl~~Ai~~~~a~~VivLPNn~ni~~aa~qa~~~~~~~~-v~VipTks~~qGlaAl~~~ 189 (313)
T PF13684_consen 111 LFRSLGVDVVISGGQTMNPSTEDLLNAIEKVGADEVIVLPNNKNIILAAEQAARLSEDKN-VVVIPTKSIPQGLAALLVF 189 (313)
T ss_pred HHHhCCCeEEEeCCCCCCCCHHHHHHHHHhCCCCeEEEEeCCchHHHHHHHHHHHhcCCC-EEEEecCCHHHHHHHHHHh
Confidence 335567666577776522234578899999766777777998888888888888886554 44554443
Q ss_pred --CCCCchhHHhhhhhhccCceecCCCCchhHHHHHHH
Q psy12654 75 --GETEDNFIADLVVGLSTGQIKTGAPCRSERLAKYNQ 110 (133)
Q Consensus 75 --GETeD~~iadLAVgl~a~~iK~G~p~r~Er~aKyN~ 110 (133)
..+-++-.. ++.=-++.+++|......|-+++|.
T Consensus 190 dp~~~~~~n~~--~M~ea~~~v~~~~It~Avrd~~~~~ 225 (313)
T PF13684_consen 190 DPEADLEENVE--AMTEAAARVRTGEITYAVRDTKING 225 (313)
T ss_pred CccCChHHHHH--HHHHHHhhCeeeeEEEeeecceecC
Confidence 111111111 1222234567777777777777774
No 189
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=26.69 E-value=1.7e+02 Score=19.43 Aligned_cols=55 Identities=16% Similarity=0.172 Sum_probs=41.7
Q ss_pred EecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeec
Q psy12654 16 IVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSH 72 (133)
Q Consensus 16 ivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~ 72 (133)
|-|.|-|-|+.+-..+.-.....+.++| ++-- ...+++-+.-+|.+.+..+++..
T Consensus 3 i~G~dRyeTs~~va~~~~~~~~~~~v~i-a~g~-~~~Dalsa~~~a~~~~~PIll~~ 57 (92)
T PF04122_consen 3 ISGADRYETSAKVAKKFYPDNKSDKVYI-ASGD-NFADALSASPLAAKNNAPILLVN 57 (92)
T ss_pred CCCCCHHHHHHHHHHHhcccCCCCEEEE-EeCc-chhhhhhhHHHHHhcCCeEEEEC
Confidence 5688999998887777444445566666 3332 37889999999999999999988
No 190
>PRK06256 biotin synthase; Validated
Probab=26.66 E-value=1.1e+02 Score=25.32 Aligned_cols=38 Identities=13% Similarity=0.241 Sum_probs=28.9
Q ss_pred cccccHHHHHHHHHHHHHCCCcE----EeecCCCCCCchhHHhh
Q psy12654 46 NQIGSVTESIQAHLLAKQNGWGT----MVSHRSGETEDNFIADL 85 (133)
Q Consensus 46 nQigTvTe~lea~~~a~~~g~~~----vvS~rsGETeD~~iadL 85 (133)
+--.+..+.+++++.+++.|+.+ |+.. |||.++++.++
T Consensus 181 ~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl--gEt~ed~~~~~ 222 (336)
T PRK06256 181 VTTHTYEDRIDTCEMVKAAGIEPCSGGIIGM--GESLEDRVEHA 222 (336)
T ss_pred CCCCCHHHHHHHHHHHHHcCCeeccCeEEeC--CCCHHHHHHHH
Confidence 33457889999999999999854 4444 89988887655
No 191
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=26.63 E-value=1.2e+02 Score=25.24 Aligned_cols=49 Identities=14% Similarity=0.167 Sum_probs=35.9
Q ss_pred ccccCHHHHHHHHhh---cccccceehccccccHHHHHHHHHHHHHCCCcEEe
Q psy12654 21 LTVTNPKRIATAVEK---KACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMV 70 (133)
Q Consensus 21 l~vTn~~ri~~~i~~---~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vv 70 (133)
.+.-+++.+++.+.+ ....++++ +|-.|++.+.-+.+++|+++|..+++
T Consensus 102 ~~~~d~~~l~~~i~~~~~~~t~~v~~-~~~~G~~~~~~~i~~l~~~~~~~lI~ 153 (380)
T TIGR03588 102 TGNIDEDALEKKLAAAKGKLPKAIVP-VDFAGKSVDMQAIAALAKKHGLKIIE 153 (380)
T ss_pred cCCcCHHHHHHHhhcccCCCceEEEE-eCCCCccCCHHHHHHHHHHcCCEEEE
Confidence 345678999998873 23445554 67789888888888999999986665
No 192
>PRK07360 FO synthase subunit 2; Reviewed
Probab=26.59 E-value=93 Score=26.58 Aligned_cols=39 Identities=28% Similarity=0.243 Sum_probs=28.9
Q ss_pred hccccccHHHHHHHHHHHHHCCCc----EEeecCCCCCCchhHHhh
Q psy12654 44 KVNQIGSVTESIQAHLLAKQNGWG----TMVSHRSGETEDNFIADL 85 (133)
Q Consensus 44 K~nQigTvTe~lea~~~a~~~g~~----~vvS~rsGETeD~~iadL 85 (133)
.|+.. |..+-+++++.|++.|+. .|+++ |||.++.+-|+
T Consensus 194 ~p~~~-s~~~~l~~i~~a~~~Gl~~~sg~i~G~--gEt~edrv~~l 236 (371)
T PRK07360 194 CPEKI-KTAEWIEIVKTAHKLGLPTTSTMMYGH--VETPEHRIDHL 236 (371)
T ss_pred CCCCC-CHHHHHHHHHHHHHcCCCceeeEEeeC--CCCHHHHHHHH
Confidence 45444 555669999999999994 46776 99987766555
No 193
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=26.54 E-value=61 Score=25.55 Aligned_cols=52 Identities=13% Similarity=0.061 Sum_probs=33.7
Q ss_pred cccHHHHHHHHHHHHHCCCcEEeecCCCCCC-----c----hhHHhhhhhhccCceecCCC
Q psy12654 48 IGSVTESIQAHLLAKQNGWGTMVSHRSGETE-----D----NFIADLVVGLSTGQIKTGAP 99 (133)
Q Consensus 48 igTvTe~lea~~~a~~~g~~~vvS~rsGETe-----D----~~iadLAVgl~a~~iK~G~p 99 (133)
--..-+.-+.++.|++.|+.+|+=.-.-+.+ + ...+.++.-+|+.+||+..|
T Consensus 108 ~~~~~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg 168 (236)
T PF01791_consen 108 DEVIEEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTG 168 (236)
T ss_dssp HHHHHHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-S
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCC
Confidence 3344566677888888999888862211111 1 44567889999999999766
No 194
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=26.48 E-value=1.5e+02 Score=24.84 Aligned_cols=64 Identities=13% Similarity=0.115 Sum_probs=42.1
Q ss_pred cCCCeEEecCcccccCHHHHHHHHhhccccccee--h-ccccccHHHHHHHHHHHHHCCCcEEeecCCC
Q psy12654 10 APEPIQIVGDDLTVTNPKRIATAVEKKACNCLLL--K-VNQIGSVTESIQAHLLAKQNGWGTMVSHRSG 75 (133)
Q Consensus 10 ~~~~iqivGDDl~vTn~~ri~~~i~~~~~na~ll--K-~nQigTvTe~lea~~~a~~~g~~~vvS~rsG 75 (133)
.|.++-.++-|. ..+++.+++++.++. .++++ - +|-.|++...=+.+++|+++|..+++=.-.+
T Consensus 123 ~g~~~v~v~~~~-~~d~~~le~ai~~~t-~ai~~v~~~~~~~g~~~~~~~i~~~a~~~gi~vivD~a~~ 189 (363)
T TIGR01437 123 GGGKVVEAGYAN-ECSAEQLEAAITEKT-AAILYIKSHHCVQKSMLSVEDAAQVAQEHNLPLIVDAAAE 189 (363)
T ss_pred cCCeEEEEcCCC-CCCHHHHHHhcChhc-eEEEEEecCCCCcCCcCCHHHHHHHHHHcCCeEEEECCCC
Confidence 344454555443 367999999998765 34442 2 3446667666678899999998777755444
No 195
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=26.47 E-value=1.5e+02 Score=23.37 Aligned_cols=66 Identities=18% Similarity=0.145 Sum_probs=43.4
Q ss_pred HHHHHhhcccccceehccccccHH-----------HHHHHHHHHHHCCCcEEeecCC-----CC-------CCchhHHhh
Q psy12654 29 IATAVEKKACNCLLLKVNQIGSVT-----------ESIQAHLLAKQNGWGTMVSHRS-----GE-------TEDNFIADL 85 (133)
Q Consensus 29 i~~~i~~~~~na~llK~nQigTvT-----------e~lea~~~a~~~g~~~vvS~rs-----GE-------TeD~~iadL 85 (133)
+...+.+...++.-+.+.|.+.++ ...+.++..-++|.-+|++.-- |+ ..|...+.+
T Consensus 79 ~~~~l~~~g~~a~~l~~~~~~l~~~~~~~~~~i~~~~~~~l~~ll~~~~ipVi~G~~~~~~~g~~~~l~rg~sD~~A~~l 158 (239)
T cd04261 79 LAMALNRLGIKAISLTGWQAGILTDGHHGKARIIDIDPDRIRELLEEGDVVIVAGFQGINEDGDITTLGRGGSDTSAVAL 158 (239)
T ss_pred HHHHHHhCCCCeEEechhhCCEEecCCCCcceechhhHHHHHHHHHcCCeEEEcCccccCCCCCEEecCCCChHHHHHHH
Confidence 444556666777777666654332 1236667777889888884442 22 358888899
Q ss_pred hhhhccCce
Q psy12654 86 VVGLSTGQI 94 (133)
Q Consensus 86 AVgl~a~~i 94 (133)
|..+++..+
T Consensus 159 A~~l~A~~l 167 (239)
T cd04261 159 AAALGADRC 167 (239)
T ss_pred HHHcCCCEE
Confidence 999999844
No 196
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=26.30 E-value=93 Score=25.80 Aligned_cols=34 Identities=15% Similarity=0.039 Sum_probs=26.7
Q ss_pred cHHHHHHHHHHHHHCCCcE----EeecCCCCCCchhHHhh
Q psy12654 50 SVTESIQAHLLAKQNGWGT----MVSHRSGETEDNFIADL 85 (133)
Q Consensus 50 TvTe~lea~~~a~~~g~~~----vvS~rsGETeD~~iadL 85 (133)
+..+.+++++.|++.|+.+ |+.+ |||.++++.++
T Consensus 151 ~~~~~l~~i~~a~~~Gi~~~~~~i~G~--gEt~ed~~~~l 188 (336)
T PRK06245 151 DPELRLETIENAGKLKIPFTTGILIGI--GETWEDRAESL 188 (336)
T ss_pred CHHHHHHHHHHHHHcCCceeeeeeeEC--CCCHHHHHHHH
Confidence 3577899999999998854 4555 99998887764
No 197
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=26.24 E-value=76 Score=25.81 Aligned_cols=54 Identities=17% Similarity=0.094 Sum_probs=42.1
Q ss_pred cccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHhhhhhhcc
Q psy12654 38 CNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIADLVVGLST 91 (133)
Q Consensus 38 ~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iadLAVgl~a 91 (133)
.+-++|=.++-|.-.+.+++++.|++.|..++.=....++.=.-++|..+-+.+
T Consensus 118 ~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~I~It~~~~s~L~~~aD~~I~~~~ 171 (257)
T cd05007 118 ERDVVIGIAASGRTPYVLGALRYARARGALTIGIACNPGSPLLQLADIAIALIT 171 (257)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEEcCC
Confidence 456667789999999999999999999999877666666655566777665543
No 198
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=26.13 E-value=3e+02 Score=23.57 Aligned_cols=89 Identities=11% Similarity=0.035 Sum_probs=52.4
Q ss_pred CCCeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHhhhhhhc
Q psy12654 11 PEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIADLVVGLS 90 (133)
Q Consensus 11 ~~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iadLAVgl~ 90 (133)
..+|-|+|+.....+..-|++.+++-. |++|..-+--.+++-++.+-++...+++++++|.- .--.|-=-.|
T Consensus 158 ~~~VNiig~~~~~~d~~el~~lL~~~G-----l~v~~~~~~~~s~eei~~~~~A~lniv~~~~~~~~---~a~~L~~~fG 229 (410)
T cd01968 158 PYDINLIGEFNVAGELWGVKPLLEKLG-----IRVLASITGDSRVDEIRRAHRAKLNVVQCSKSMIY---LARKMEEKYG 229 (410)
T ss_pred CCcEEEECCCCCcccHHHHHHHHHHcC-----CeEEEEeCCCCCHHHHHhhhhCcEEEEEchhHHHH---HHHHHHHHhC
Confidence 467999998777777777888777543 33442222223445555567777778777665421 2222334567
Q ss_pred cCceecCCCCchhHHHHH
Q psy12654 91 TGQIKTGAPCRSERLAKY 108 (133)
Q Consensus 91 a~~iK~G~p~r~Er~aKy 108 (133)
.+++.. .|-+-+.+.++
T Consensus 230 ip~~~~-~p~G~~~t~~~ 246 (410)
T cd01968 230 IPYIEV-SFYGIRDTSKS 246 (410)
T ss_pred CCeEec-CcCcHHHHHHH
Confidence 777763 56666555543
No 199
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=25.66 E-value=2e+02 Score=23.41 Aligned_cols=44 Identities=9% Similarity=0.010 Sum_probs=30.0
Q ss_pred cHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHhhhhhhccCceecCCCCchhH
Q psy12654 50 SVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIADLVVGLSTGQIKTGAPCRSER 104 (133)
Q Consensus 50 TvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iadLAVgl~a~~iK~G~p~r~Er 104 (133)
|+.|+...++. ...+|| .|+-..|||.+++++-|=+=+|....+
T Consensus 250 sL~el~ali~~-----a~l~Vs------~DSGp~HlAaA~g~p~v~Lfgpt~p~~ 293 (344)
T TIGR02201 250 TLPQLAALIDH-----ARLFIG------VDSVPMHMAAALGTPLVALFGPSKHIF 293 (344)
T ss_pred CHHHHHHHHHh-----CCEEEe------cCCHHHHHHHHcCCCEEEEECCCCccc
Confidence 66666655543 346776 578899999999999987644544333
No 200
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=25.62 E-value=1.6e+02 Score=26.09 Aligned_cols=69 Identities=17% Similarity=0.190 Sum_probs=47.7
Q ss_pred ccccceehcc-----ccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHhhhhhhccCceecCCCCchhHHHHHHHH
Q psy12654 37 ACNCLLLKVN-----QIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIADLVVGLSTGQIKTGAPCRSERLAKYNQI 111 (133)
Q Consensus 37 ~~na~llK~n-----QigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iadLAVgl~a~~iK~G~p~r~Er~aKyN~L 111 (133)
.+..++--++ .+=++.+..+.-+...++|+..-|-.... +. .-||+|.|.|-+-++-|.+.
T Consensus 23 G~~giV~al~~~p~gevW~~~~i~~~k~~ie~~GL~~~vvEs~p------v~--------e~Ik~g~~~rd~~Ienyk~~ 88 (394)
T TIGR00695 23 GATGIVTALHHIPNGEVWEKEEIRKRKEYIESAGLHWSVVESVP------VH--------EAIKTGTGNYGRWIENYKQT 88 (394)
T ss_pred CCcceeecCCCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCC------cc--------HHHHcCCCcHHHHHHHHHHH
Confidence 5555553333 44567778888888889998776632211 11 37999999999999999999
Q ss_pred HHHHHHhC
Q psy12654 112 LRIEEELG 119 (133)
Q Consensus 112 LrIeeelg 119 (133)
||==-+.|
T Consensus 89 irNla~~G 96 (394)
T TIGR00695 89 LRNLAQCG 96 (394)
T ss_pred HHHHHHcC
Confidence 98533333
No 201
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=25.59 E-value=1.2e+02 Score=25.40 Aligned_cols=51 Identities=8% Similarity=0.021 Sum_probs=36.1
Q ss_pred cccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeec
Q psy12654 22 TVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSH 72 (133)
Q Consensus 22 ~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~ 72 (133)
+.=+++.+++.+.+.....+++-.+..|+..+.-+.+++|+++|..+++=.
T Consensus 150 ~~~d~~~l~~~i~~~~~k~v~~~~~~~~~~~~~~~I~~la~~~~~~livD~ 200 (416)
T PRK00011 150 GLIDYDEVEKLALEHKPKLIIAGASAYSRPIDFKRFREIADEVGAYLMVDM 200 (416)
T ss_pred CCcCHHHHHHHHHhcCCCEEEECCCcCCCccCHHHHHHHHHHcCCEEEEEC
Confidence 344688899888754455667655667766666677889999997776544
No 202
>PRK05967 cystathionine beta-lyase; Provisional
Probab=25.55 E-value=1.6e+02 Score=25.53 Aligned_cols=82 Identities=10% Similarity=-0.004 Sum_probs=51.7
Q ss_pred hhhcCCCeEEecCcccccCHHHHHHHHhhcccccceeh-c-cccccHHHHHHHHHHHHHCCCcEEeecCCCCC----Cch
Q psy12654 7 NDFAPEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLK-V-NQIGSVTESIQAHLLAKQNGWGTMVSHRSGET----EDN 80 (133)
Q Consensus 7 ~~~~~~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK-~-nQigTvTe~lea~~~a~~~g~~~vvS~rsGET----eD~ 80 (133)
-.+.|.++..+.. ++.+.+++++.++ ...+.+- | |..+++.+.-+.+++|+++|..+++=.-.... ..+
T Consensus 124 l~~~Gi~v~~vd~----~~~e~l~~al~~~-TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~a~p~~~~pl~ 198 (395)
T PRK05967 124 LKRLGVEVEYYDP----EIGAGIAKLMRPN-TKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWATPLYFRPLD 198 (395)
T ss_pred HHhcCeEEEEeCC----CCHHHHHHhcCcC-ceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCccCceecChhH
Confidence 3455666666621 2456788888665 4566666 3 66889999999999999999877764443221 122
Q ss_pred hHHhhhhhhccCc
Q psy12654 81 FIADLVVGLSTGQ 93 (133)
Q Consensus 81 ~iadLAVgl~a~~ 93 (133)
+=+|+.|-..+.+
T Consensus 199 ~GaDivv~S~tKy 211 (395)
T PRK05967 199 FGVDISIHAATKY 211 (395)
T ss_pred cCCCEEEEecccc
Confidence 2256665444444
No 203
>PRK15364 pathogenicity island 2 effector protein SseB; Provisional
Probab=25.47 E-value=39 Score=27.38 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=25.6
Q ss_pred HHHHHHHHCCCcEEeecCCCCCCchhHHh--hhhhhccCcee
Q psy12654 56 QAHLLAKQNGWGTMVSHRSGETEDNFIAD--LVVGLSTGQIK 95 (133)
Q Consensus 56 ea~~~a~~~g~~~vvS~rsGETeD~~iad--LAVgl~a~~iK 95 (133)
+++++.++||+.| +|-+.|+++++ ..-+|+.|++.
T Consensus 102 dVI~YmrdNgI~V-----dG~sid~Yl~k~~~~~~LdkG~Lq 138 (196)
T PRK15364 102 DVIKYMRDNGILI-----DGMTIDDYMAKYGDHGKLDKGGLQ 138 (196)
T ss_pred HHHHHHHHcCcee-----cccchHHHHhccCCccCCChhhHH
Confidence 5677788899987 89999999977 44445555543
No 204
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=25.41 E-value=1.7e+02 Score=25.24 Aligned_cols=91 Identities=20% Similarity=0.138 Sum_probs=55.1
Q ss_pred ccCHHHHHHHHhhccc--------ccceehccccccHHHHHH----HHHHHHHCCCcEE--eecC-----CCCCCchhHH
Q psy12654 23 VTNPKRIATAVEKKAC--------NCLLLKVNQIGSVTESIQ----AHLLAKQNGWGTM--VSHR-----SGETEDNFIA 83 (133)
Q Consensus 23 vTn~~ri~~~i~~~~~--------na~llK~nQigTvTe~le----a~~~a~~~g~~~v--vS~r-----sGETeD~~ia 83 (133)
+-|.+-+.++++-+.- +-..++-|.-.|..|+++ ++++|+++|..+. +|.. .|.++-+++.
T Consensus 121 ~~n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~ 200 (347)
T PLN02746 121 TPNLKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVA 200 (347)
T ss_pred cCCHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHH
Confidence 4589999998876522 222234456678888884 9999999998875 4432 2334555665
Q ss_pred hh---hhhhccCceecC---CCCchhHHHHHHHHHH
Q psy12654 84 DL---VVGLSTGQIKTG---APCRSERLAKYNQILR 113 (133)
Q Consensus 84 dL---AVgl~a~~iK~G---~p~r~Er~aKyN~LLr 113 (133)
++ ++..|+..|-+. +...-+.+..+=+.|+
T Consensus 201 ~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~ 236 (347)
T PLN02746 201 YVAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVM 236 (347)
T ss_pred HHHHHHHHcCCCEEEecCCcCCcCHHHHHHHHHHHH
Confidence 54 567777777442 2223344544444443
No 205
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=25.36 E-value=1.5e+02 Score=24.49 Aligned_cols=60 Identities=17% Similarity=0.217 Sum_probs=42.9
Q ss_pred eEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCC
Q psy12654 14 IQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGE 76 (133)
Q Consensus 14 iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGE 76 (133)
+-|+=-|. .-+|.+|..+-. -.++++||-..-. +..+.-+..+.|++.|+.++|--++.+
T Consensus 103 ~PvL~KDF-Iid~~QI~ea~~-~GADavLLI~~~L-~~~~l~~l~~~a~~lGle~LVEVh~~~ 162 (247)
T PRK13957 103 IPVLRKDF-ILDEIQIREARA-FGASAILLIVRIL-TPSQIKSFLKHASSLGMDVLVEVHTED 162 (247)
T ss_pred CCEEeccc-cCCHHHHHHHHH-cCCCEEEeEHhhC-CHHHHHHHHHHHHHcCCceEEEECCHH
Confidence 44555554 446888888766 5678888844433 444677889999999999999887654
No 206
>TIGR03841 F420_Rv3093c probable F420-dependent oxidoreductase, Rv3093c family. This model describes a small family of enzymes in the bacterial luciferase-like monooxygenase family, which includes F420-dependent enzymes such as N5,N10-methylenetetrahydromethanopterin reductase as well as FMN-dependent enzymes. All members of this family are from species that produce coenzyme F420; SIMBAL analysis suggests that members of this family bind F420 rather than FMN.
Probab=25.36 E-value=1.3e+02 Score=24.67 Aligned_cols=47 Identities=17% Similarity=0.269 Sum_probs=30.2
Q ss_pred cHHHHHHHHHHHHHCCCcEEe-ecCCCCCCchhHHhhhhhhccCceecCC
Q psy12654 50 SVTESIQAHLLAKQNGWGTMV-SHRSGETEDNFIADLVVGLSTGQIKTGA 98 (133)
Q Consensus 50 TvTe~lea~~~a~~~g~~~vv-S~rsGETeD~~iadLAVgl~a~~iK~G~ 98 (133)
.+.+.++.++.|.+.|+..+. +.+.+ -|.+..=-+++-.+..|++|.
T Consensus 8 ~~~~~~~~a~~AE~~Gfd~~w~~e~~~--~d~~~~laalA~~T~ri~lgt 55 (301)
T TIGR03841 8 PLAEATRLARAADELGYTDVWSGEMAG--YDAFALATLVAAWAPRLRLGV 55 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccCCC--CCHHHHHHHHHHhCCcceEee
Confidence 467888999999999998554 33322 344443335556666677765
No 207
>TIGR03554 F420_G6P_DH glucose-6-phosphate dehydrogenase, F420-dependent. This family consists of the F420-dependent glucose-6-phosphate dehydrogenase of Mycobacterium and Nocardia. It shows homology to several other F420-dependent enzymes rather than to the NAD or NADP-dependent glucose-6-phosphate dehydrogenases.
Probab=25.25 E-value=1.7e+02 Score=24.39 Aligned_cols=55 Identities=22% Similarity=0.273 Sum_probs=34.6
Q ss_pred ehccccccHHHHHHHHHHHHHCCCcEE-eecC-------CCCCCchhHHhhhhhhccCceecCC
Q psy12654 43 LKVNQIGSVTESIQAHLLAKQNGWGTM-VSHR-------SGETEDNFIADLVVGLSTGQIKTGA 98 (133)
Q Consensus 43 lK~nQigTvTe~lea~~~a~~~g~~~v-vS~r-------sGETeD~~iadLAVgl~a~~iK~G~ 98 (133)
+.|.|. .+.+.++.++.|.+.|+..+ ++.. .|...+.+..=-+++-.+..||+|.
T Consensus 8 ~~~~~~-~~~~~~~~a~~AE~~Gfd~~w~~eh~~~~~~~~~~~~~~~~~laa~A~~T~rI~lgt 70 (331)
T TIGR03554 8 ASAEQF-APRELVELAVLAEAHGMDSATVSDHFQPWRHQGGHAPFSLSWMTAVGERTNRLLLGT 70 (331)
T ss_pred cccccC-CHHHHHHHHHHHHHcCCCEEEEhhhcccccccCCCCccHHHHHHHHHHhCCcceEEE
Confidence 445666 78889999999999999865 4432 1223333222124555677777774
No 208
>TIGR02801 tolR TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score.
Probab=25.25 E-value=1.8e+02 Score=20.66 Aligned_cols=42 Identities=24% Similarity=0.269 Sum_probs=32.3
Q ss_pred HHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcE
Q psy12654 27 KRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGT 68 (133)
Q Consensus 27 ~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~ 68 (133)
.++++..++..-..++|++.+-.+....+++...++++|+.-
T Consensus 82 ~~L~~~~~~~~~~~v~i~aD~~~~~~~vv~vmd~~~~~G~~~ 123 (129)
T TIGR02801 82 AEIAAALAANPDTPVLIRADKTVPYGEVIKVMALLKQAGIEK 123 (129)
T ss_pred HHHHHHHhhCCCceEEEEcCCCCCHHHHHHHHHHHHHcCCCe
Confidence 345555444455569999999989999999999999999864
No 209
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=25.24 E-value=2.3e+02 Score=19.46 Aligned_cols=63 Identities=17% Similarity=0.098 Sum_probs=43.6
Q ss_pred hhcCCCeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCC---CcEEeecC
Q psy12654 8 DFAPEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNG---WGTMVSHR 73 (133)
Q Consensus 8 ~~~~~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g---~~~vvS~r 73 (133)
+..|-++.-.|-++ .++.+.+.+.+.....+.|....-.....+.+.++..++.+ ..++++..
T Consensus 24 ~~~G~~V~~lg~~~---~~~~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~ 89 (119)
T cd02067 24 RDAGFEVIDLGVDV---PPEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGA 89 (119)
T ss_pred HHCCCEEEECCCCC---CHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEECC
Confidence 34566665566553 46677777888888888888776667777777777777763 45666665
No 210
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=25.20 E-value=3.2e+02 Score=21.03 Aligned_cols=62 Identities=18% Similarity=0.135 Sum_probs=45.7
Q ss_pred hcCCCeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCC----cEEeecC
Q psy12654 9 FAPEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGW----GTMVSHR 73 (133)
Q Consensus 9 ~~~~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~----~~vvS~r 73 (133)
..|-++.-.|-|+ .++.+..++.+...+.+.|......++....+.++..++.+. .++++..
T Consensus 108 ~~G~~vi~lG~~~---p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~lr~~~~~~~~~i~vGG~ 173 (201)
T cd02070 108 ANGFEVIDLGRDV---PPEEFVEAVKEHKPDILGLSALMTTTMGGMKEVIEALKEAGLRDKVKVMVGGA 173 (201)
T ss_pred HCCCEEEECCCCC---CHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHCCCCcCCeEEEECC
Confidence 3455664567665 467788888888888988888777788888888888887754 5667665
No 211
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=25.20 E-value=2.1e+02 Score=25.41 Aligned_cols=88 Identities=14% Similarity=0.040 Sum_probs=56.5
Q ss_pred CCCeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHhh-hhhh
Q psy12654 11 PEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIADL-VVGL 89 (133)
Q Consensus 11 ~~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iadL-AVgl 89 (133)
..+|-|+||-...-|...|++.+++-..+. |-.-|-..+++-++.+.++-+.++++++++ ..+|.. -=-.
T Consensus 207 ~~~VNiiG~~~~~gd~~eik~lL~~~Gi~v-----~~~~sg~~t~~~i~~~~~A~lniv~~~~~~----~~~A~~Le~~f 277 (466)
T TIGR01282 207 PYDVAIIGDYNIGGDAWESRILLEEIGLRV-----VAQWSGDGTLNEMENAPKAKLNLIHCYRSM----NYISRHMEEKY 277 (466)
T ss_pred CCeEEEEecCCCcccHHHHHHHHHHcCCeE-----EEEECCCCCHHHHHhcccCCEEEEEChHHH----HHHHHHHHHHh
Confidence 357999998777777777888777654333 221111235566666788888999988866 234433 3457
Q ss_pred ccCceecCCCCchhHHHHH
Q psy12654 90 STGQIKTGAPCRSERLAKY 108 (133)
Q Consensus 90 ~a~~iK~G~p~r~Er~aKy 108 (133)
|.++++.. |-+-+-++++
T Consensus 278 GiP~~~~~-~~Gi~~T~~~ 295 (466)
T TIGR01282 278 GIPWMEYN-FFGPTKIAES 295 (466)
T ss_pred CCceEeCC-CCCHHHHHHH
Confidence 88888774 6666655544
No 212
>PRK11096 ansB L-asparaginase II; Provisional
Probab=24.91 E-value=3.6e+02 Score=23.20 Aligned_cols=72 Identities=17% Similarity=0.178 Sum_probs=47.9
Q ss_pred CHHHHHHHHhhcccccceehccccccH-HHHHHHHHHHHHCCCcEEeecCC--CCCCchhHHhhhhhhccCceecCCCC
Q psy12654 25 NPKRIATAVEKKACNCLLLKVNQIGSV-TESIQAHLLAKQNGWGTMVSHRS--GETEDNFIADLVVGLSTGQIKTGAPC 100 (133)
Q Consensus 25 n~~ri~~~i~~~~~na~llK~nQigTv-Te~lea~~~a~~~g~~~vvS~rs--GETeD~~iadLAVgl~a~~iK~G~p~ 100 (133)
+++.++..++. ...+++|.--=.|.+ .+.+++++.+.++|..+|++.|+ |.+....-++ ...+|.|-.|...
T Consensus 245 ~~~~l~~~l~~-~~~GiVl~g~G~Gn~~~~~~~~l~~a~~~GipVV~~Sqc~~G~v~~~~~~~---l~~~G~I~~g~lt 319 (347)
T PRK11096 245 SDLPAKALVDA-GYDGIVSAGVGNGNLYKTVFDTLATAAKNGVAVVRSSRVPTGATTQDAEVD---DAKYGFVASGTLN 319 (347)
T ss_pred CHHHHHHHHhc-cCCEEEEEeECCCCCCHHHHHHHHHHHHCCCEEEEeCCCCCCCcCcccccc---hhhCCEEECCCCC
Confidence 57777776654 468888876555555 37888999999999999999998 4442111112 2345556666553
No 213
>PRK08462 biotin carboxylase; Validated
Probab=24.76 E-value=1.6e+02 Score=25.21 Aligned_cols=68 Identities=19% Similarity=0.260 Sum_probs=40.3
Q ss_pred HHHHHHHHHHCCCcEEeecCCCCCCchhHHhhhhhhccCceecCCCCchhHHHHHHHHHHHHHHhCCcccccC
Q psy12654 54 SIQAHLLAKQNGWGTMVSHRSGETEDNFIADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGANAKFAG 126 (133)
Q Consensus 54 ~lea~~~a~~~g~~~vvS~rsGETeD~~iadLAVgl~a~~iK~G~p~r~Er~aKyN~LLrIeeelg~~~~~~g 126 (133)
++.+++.|++.|+.+++-+...+-. ...+...-..+..|.....|....++.|+.|-++.+-.+.+.|
T Consensus 16 ~~~~~~~~~~~G~~~v~~~~~~d~~-----~~~~~~ad~~~~~~~~~~~~~y~~~~~l~~~~~~~~~D~i~pg 83 (445)
T PRK08462 16 ALRAIRTIQEMGKEAIAIYSTADKD-----ALYLKYADAKICIGGAKSSESYLNIPAIISAAEIFEADAIFPG 83 (445)
T ss_pred HHHHHHHHHHcCCCEEEEechhhcC-----CchhhhCCEEEEeCCCchhcccCCHHHHHHHHHHcCCCEEEEC
Confidence 6789999999999999886544321 0112222233444444334444445788888777765554444
No 214
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=24.70 E-value=3.5e+02 Score=21.84 Aligned_cols=72 Identities=13% Similarity=0.149 Sum_probs=43.7
Q ss_pred HHHHHHHhhcccccceehcc-----ccccHHHHHHHHHHHHHCCCcEEeec------CCCCCCchhH---HhhhhhhccC
Q psy12654 27 KRIATAVEKKACNCLLLKVN-----QIGSVTESIQAHLLAKQNGWGTMVSH------RSGETEDNFI---ADLVVGLSTG 92 (133)
Q Consensus 27 ~ri~~~i~~~~~na~llK~n-----QigTvTe~lea~~~a~~~g~~~vvS~------rsGETeD~~i---adLAVgl~a~ 92 (133)
..++++++.+ ++++-+..| .--...+.-+.++.+++.|..+++-. ......++.+ +.+++-+|+.
T Consensus 97 ~~ve~A~~~G-ad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD 175 (267)
T PRK07226 97 GTVEEAIKLG-ADAVSVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGAD 175 (267)
T ss_pred ecHHHHHHcC-CCEEEEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCC
Confidence 3466776655 445555443 12234466677778888999888841 1111122232 4678889999
Q ss_pred ceecCCC
Q psy12654 93 QIKTGAP 99 (133)
Q Consensus 93 ~iK~G~p 99 (133)
+||+.-+
T Consensus 176 ~vKt~~~ 182 (267)
T PRK07226 176 IVKTNYT 182 (267)
T ss_pred EEeeCCC
Confidence 9999855
No 215
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=24.65 E-value=2.3e+02 Score=21.97 Aligned_cols=71 Identities=20% Similarity=0.177 Sum_probs=42.9
Q ss_pred HHHHHHhhcccccceehccccccH------HHHHHHHHHHHHCCCcEEeecCC-CC------CCchh--HHhhhhhhccC
Q psy12654 28 RIATAVEKKACNCLLLKVNQIGSV------TESIQAHLLAKQNGWGTMVSHRS-GE------TEDNF--IADLVVGLSTG 92 (133)
Q Consensus 28 ri~~~i~~~~~na~llK~nQigTv------Te~lea~~~a~~~g~~~vvS~rs-GE------TeD~~--iadLAVgl~a~ 92 (133)
.++++++. .++++.+-.+ ++.. .+.-+..+.+++.|..+|+-... |. +++.. .+..+...|+.
T Consensus 81 ~v~~a~~~-Ga~~v~~~~~-~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD 158 (235)
T cd00958 81 SVEDAVRL-GADAVGVTVY-VGSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGAD 158 (235)
T ss_pred CHHHHHHC-CCCEEEEEEe-cCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCC
Confidence 35665544 4556644333 3333 36667777888999999984322 21 12221 24568889999
Q ss_pred ceecCCCC
Q psy12654 93 QIKTGAPC 100 (133)
Q Consensus 93 ~iK~G~p~ 100 (133)
+||+..+.
T Consensus 159 ~Ik~~~~~ 166 (235)
T cd00958 159 IVKTKYTG 166 (235)
T ss_pred EEEecCCC
Confidence 99997554
No 216
>PF00296 Bac_luciferase: Luciferase-like monooxygenase; InterPro: IPR011251 Bacterial luciferase is a flavin monooxygenase that catalyses the oxidation of long-chain aldehydes and releases energy in the form of visible light, and which uses flavin as a substrate rather than a cofactor []. Bacterial luciferase is an alpha/beta (LuxA/LuxB) heterodimer, where each individual subunit folds into a single TIM (beta/alpha)8-barrel domain. There are structural similarities between bacterial luciferase and nonfluorescent flavoproteins (LuxF, FP390), alkanesulphonate monooxygenase (SsuD), and coenzyme F420-dependent terahydromethanopterin reductase, which make up clearly related families with somewhat different folds [, , ]. More information about these proteins can be found at Protein of the Month: Luciferase [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0055114 oxidation-reduction process; PDB: 2I7G_B 1NFP_A 1TVL_A 1YW1_A 1M41_B 1NQK_A 2B81_A 3RAO_A 1LUC_B 3FGC_B ....
Probab=24.50 E-value=1.7e+02 Score=23.17 Aligned_cols=50 Identities=20% Similarity=0.273 Sum_probs=35.0
Q ss_pred ccHHHHHHHHHHHHHCCCcEEeecCCCCC-----CchhHHhhhhhhccCceecCC
Q psy12654 49 GSVTESIQAHLLAKQNGWGTMVSHRSGET-----EDNFIADLVVGLSTGQIKTGA 98 (133)
Q Consensus 49 gTvTe~lea~~~a~~~g~~~vvS~rsGET-----eD~~iadLAVgl~a~~iK~G~ 98 (133)
..+.+.++.+++|.+.|+..+.-.-..-+ .|.++.=-+++-.+..|++|.
T Consensus 20 ~~~~~~~~~a~~ae~~Gfd~~w~~eh~~~~~~~~~~p~~~~a~~a~~T~~i~lg~ 74 (307)
T PF00296_consen 20 QPLDELVELAQLAEELGFDSVWVSEHHFTDYGSSPDPFVLLAALAARTKRIRLGT 74 (307)
T ss_dssp SHHHHHHHHHHHHHHTT-SEEEEE-SSSSTTTSTS-HHHHHHHHHHT-SSSEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecccCCCccccchhHHHHHHHHhhccCccceee
Confidence 37899999999999999976643322222 777777777788888888875
No 217
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=24.50 E-value=4.2e+02 Score=23.33 Aligned_cols=81 Identities=15% Similarity=0.218 Sum_probs=50.6
Q ss_pred eEEecCcccccC--HHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHC--CCcEEeecCCCCCCchhHHhhhhhh
Q psy12654 14 IQIVGDDLTVTN--PKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQN--GWGTMVSHRSGETEDNFIADLVVGL 89 (133)
Q Consensus 14 iqivGDDl~vTn--~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~--g~~~vvS~rsGETeD~~iadLAVgl 89 (133)
-.+||-.+-++. .+|....+ +...+.+.|-..|- .-...++.++..++. ...+++ |.....--|..++-.
T Consensus 212 ~l~V~aav~~~~~~~~r~~~L~-~aG~d~I~vd~a~g-~~~~~~~~i~~i~~~~~~~~vi~----G~v~t~~~a~~l~~a 285 (450)
T TIGR01302 212 RLIVGAAVGTREFDKERAEALV-KAGVDVIVIDSSHG-HSIYVIDSIKEIKKTYPDLDIIA----GNVATAEQAKALIDA 285 (450)
T ss_pred CEEEEEEecCchhHHHHHHHHH-HhCCCEEEEECCCC-cHhHHHHHHHHHHHhCCCCCEEE----EeCCCHHHHHHHHHh
Confidence 346665565532 45666544 45678888877663 334577888887776 344444 444444445667778
Q ss_pred ccCceecC-CCC
Q psy12654 90 STGQIKTG-APC 100 (133)
Q Consensus 90 ~a~~iK~G-~p~ 100 (133)
|+.+||+| +|.
T Consensus 286 Gad~i~vg~g~G 297 (450)
T TIGR01302 286 GADGLRVGIGPG 297 (450)
T ss_pred CCCEEEECCCCC
Confidence 99999987 553
No 218
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=24.28 E-value=2.1e+02 Score=22.84 Aligned_cols=45 Identities=11% Similarity=0.155 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHCCCcEEeecCC-CCCCchhHHhhh---hhhccCceec
Q psy12654 52 TESIQAHLLAKQNGWGTMVSHRS-GETEDNFIADLV---VGLSTGQIKT 96 (133)
Q Consensus 52 Te~lea~~~a~~~g~~~vvS~rs-GETeD~~iadLA---Vgl~a~~iK~ 96 (133)
....++++.|++.|+.+.++.-. +.++++++.+++ +..|+..|-+
T Consensus 110 ~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l 158 (259)
T cd07939 110 DQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRF 158 (259)
T ss_pred HHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEe
Confidence 34458899999999988776654 446778887765 4556666544
No 219
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=24.21 E-value=2.9e+02 Score=21.85 Aligned_cols=61 Identities=18% Similarity=0.208 Sum_probs=37.4
Q ss_pred cCCCeEEecCcccccCHHHHHHHHhhc------cccccee-hcccccc---HHHHHHHHHHHHHCCCcEEe
Q psy12654 10 APEPIQIVGDDLTVTNPKRIATAVEKK------ACNCLLL-KVNQIGS---VTESIQAHLLAKQNGWGTMV 70 (133)
Q Consensus 10 ~~~~iqivGDDl~vTn~~ri~~~i~~~------~~na~ll-K~nQigT---vTe~lea~~~a~~~g~~~vv 70 (133)
.|.++..+--+-+.-+++.+.+.+.+. ....++| -||..|+ +.+.-+.++.++++|..+++
T Consensus 94 ~g~~~~~v~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~g~~~~~~~l~~i~~~~~~~~~~liv 164 (338)
T cd06502 94 SGVKLLPVPGENGKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEGGTVYPLDELKAISALAKENGLPLHL 164 (338)
T ss_pred cCceEEeecCCCCcCCHHHHHHHhhccCCCcCCcceEEEEEeecCCccccCHHHHHHHHHHHHHcCCeEee
Confidence 344444443332445688898888651 2233443 3666674 56666788889998877776
No 220
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=24.17 E-value=1.6e+02 Score=25.55 Aligned_cols=53 Identities=23% Similarity=0.201 Sum_probs=43.2
Q ss_pred CHHHHHHHHhhcccccceehccccccHH-HHHHHHHHHHHCCCcEEeecCCCCC
Q psy12654 25 NPKRIATAVEKKACNCLLLKVNQIGSVT-ESIQAHLLAKQNGWGTMVSHRSGET 77 (133)
Q Consensus 25 n~~ri~~~i~~~~~na~llK~nQigTvT-e~lea~~~a~~~g~~~vvS~rsGET 77 (133)
+++.+..++-.....+++|.=.=.|.++ +.++.++.+.+.|..++++.|..+=
T Consensus 242 ~~~~i~~a~~~~g~~GiVie~~G~G~~~~~~~~~i~~~~~~gi~VV~sSr~~~G 295 (351)
T COG0252 242 SSSLIDSALLSSGAKGLVLEGTGSGNVTPALIESIERASKRGIPVVYSSRCLSG 295 (351)
T ss_pred CHHHHHHHHHhcCCCEEEEEEECCCCCChHHHHHHHHHHHCCCeEEEEeccCCC
Confidence 3567777777888999999877666665 5789999999999999999998553
No 221
>PRK10090 aldehyde dehydrogenase A; Provisional
Probab=24.11 E-value=86 Score=27.15 Aligned_cols=70 Identities=14% Similarity=0.195 Sum_probs=40.2
Q ss_pred hhcccccceehccccccHHHHHHHHHHHHHCCCc----EEeecCCCCCCchhHHhhhhhhccCceecCCCCchhHHHH
Q psy12654 34 EKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWG----TMVSHRSGETEDNFIADLVVGLSTGQIKTGAPCRSERLAK 107 (133)
Q Consensus 34 ~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~----~vvS~rsGETeD~~iadLAVgl~a~~iK~G~p~r~Er~aK 107 (133)
.-.+.|++++||+.....| +....++.++.|+. -+|...+.+..+..+.|-.|.. -.=+|++.-+..+++
T Consensus 95 ALaaGN~VvlKps~~~p~~-~~~l~~~~~~aglP~gv~~~v~g~~~~~~~~l~~~~~v~~---V~ftGs~~~g~~v~~ 168 (409)
T PRK10090 95 ALLTGNTIVIKPSEFTPNN-AIAFAKIVDEIGLPKGVFNLVLGRGETVGQELAGNPKVAM---VSMTGSVSAGEKIMA 168 (409)
T ss_pred HHHcCCEEEEECCCcChHH-HHHHHHHHHHcCCCcccEEEEeCCChhHHHHHhcCCCcCE---EEEECCHHHHHHHHH
Confidence 3447999999999876555 34567777777654 3554332233333333333322 233577766666643
No 222
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=24.00 E-value=2.6e+02 Score=23.44 Aligned_cols=69 Identities=13% Similarity=0.191 Sum_probs=49.0
Q ss_pred CCeEEecCcccccCH--HHHHHHHhhccccccee-hccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCch
Q psy12654 12 EPIQIVGDDLTVTNP--KRIATAVEKKACNCLLL-KVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDN 80 (133)
Q Consensus 12 ~~iqivGDDl~vTn~--~ri~~~i~~~~~na~ll-K~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~ 80 (133)
.++.||.|.-...+. +++.+.++++..+..++ .+....|+....++++.+++.+...||+--.|-.-|.
T Consensus 24 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IiaiGGGs~~D~ 95 (370)
T cd08551 24 RKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIAVGGGSVLDT 95 (370)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchHHHH
Confidence 688888876543322 45777777655555444 3445568888889999999999999998888877654
No 223
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd
Probab=23.89 E-value=1.3e+02 Score=23.57 Aligned_cols=67 Identities=22% Similarity=0.240 Sum_probs=43.8
Q ss_pred HHHHHhhcccccceehccccccHH-----------HHHHHHHHHHHC-CCcEEeec-----CCCCC-------CchhHHh
Q psy12654 29 IATAVEKKACNCLLLKVNQIGSVT-----------ESIQAHLLAKQN-GWGTMVSH-----RSGET-------EDNFIAD 84 (133)
Q Consensus 29 i~~~i~~~~~na~llK~nQigTvT-----------e~lea~~~a~~~-g~~~vvS~-----rsGET-------eD~~iad 84 (133)
+...+++...++..+.+.|+...+ ...+.++..-+. |..+|++. ..|++ .|...+.
T Consensus 65 ~~~~l~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~vpVv~g~i~~~~~g~~~~l~rg~sD~~A~~ 144 (227)
T cd04234 65 LAAALRDRGIKARSLDARQAGITTDDNHGAARIIEISYERLKELLAEIGKVPVVTGFIGRNEDGEITTLGRGGSDYSAAA 144 (227)
T ss_pred HHHHHHHCCCCeEEeCHHHCCEEcCCccchhhHHHHHHHHHHHHHhhCCCEEEecCceecCCCCCEEEeeCCCcHHHHHH
Confidence 355566667777766666654332 234555556666 88777744 34554 6888889
Q ss_pred hhhhhccCcee
Q psy12654 85 LVVGLSTGQIK 95 (133)
Q Consensus 85 LAVgl~a~~iK 95 (133)
+|..+++..+-
T Consensus 145 lA~~l~A~~l~ 155 (227)
T cd04234 145 LAAALGADEVE 155 (227)
T ss_pred HHHHhCCCEEE
Confidence 99999998664
No 224
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=23.84 E-value=2.7e+02 Score=25.08 Aligned_cols=72 Identities=19% Similarity=0.292 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHCCCcEEeecCCCCCCchhHHhhhhhhccCceecCCCCchhHHHHHHHHHHHHHHhCCcccccCccC
Q psy12654 53 ESIQAHLLAKQNGWGTMVSHRSGETEDNFIADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGANAKFAGKNF 129 (133)
Q Consensus 53 e~lea~~~a~~~g~~~vvS~rsGETeD~~iadLAVgl~a~~iK~G~p~r~Er~aKyN~LLrIeeelg~~~~~~g~~~ 129 (133)
-++...+.+++.|+.++.-++..+-.. +-|.+.-..+-+|.+...+......+++...++.+..++++|--|
T Consensus 13 ia~ri~ra~~~lGi~tvav~s~~d~~~-----~~~~~adeav~i~~~~~~~syl~i~~ii~~a~~~gadai~pGygf 84 (449)
T COG0439 13 IAVRIIRACRELGIETVAVYSEADADA-----LHVALADEAVCIGPAPSADSYLNIDAIIAAAEETGADAIHPGYGF 84 (449)
T ss_pred hHHHHHHHHHHhCCeEEEEeccccccc-----hhhhhCceEEEcCCccchhhhhhHHHHHHHHHhcCCceEcccchh
Confidence 377888999999999987777544433 445555566666756677888999999999999999999988544
No 225
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=23.76 E-value=1.1e+02 Score=26.08 Aligned_cols=49 Identities=10% Similarity=0.199 Sum_probs=35.0
Q ss_pred hccccccHHHHHHHHHHHHH--CCCcE---EeecCCCCCCchhHH--hhhhhhccC
Q psy12654 44 KVNQIGSVTESIQAHLLAKQ--NGWGT---MVSHRSGETEDNFIA--DLVVGLSTG 92 (133)
Q Consensus 44 K~nQigTvTe~lea~~~a~~--~g~~~---vvS~rsGETeD~~ia--dLAVgl~a~ 92 (133)
..|.--+..+..++++.+++ .|+.+ ++-.-.|||+++|.. |++..++..
T Consensus 265 ~m~R~~~~~~~~~~v~~l~~~~~gi~i~~~~IvG~PgET~ed~~~tl~~i~~~~~~ 320 (414)
T TIGR01579 265 RMRRKYTRDDFLKLVNKLRSVRPDYAFGTDIIVGFPGESEEDFQETLRMVKEIEFS 320 (414)
T ss_pred hcCCCCCHHHHHHHHHHHHHhCCCCeeeeeEEEECCCCCHHHHHHHHHHHHhCCCC
Confidence 44555678899999999999 78764 344557999999976 445555443
No 226
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=23.67 E-value=1.7e+02 Score=24.55 Aligned_cols=72 Identities=17% Similarity=0.165 Sum_probs=46.0
Q ss_pred hcCCCeEEecCcccc-cCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCch
Q psy12654 9 FAPEPIQIVGDDLTV-TNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDN 80 (133)
Q Consensus 9 ~~~~~iqivGDDl~v-Tn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~ 80 (133)
..|.++.||.|.-.. -..+++.+.+++...+....-....-|.....++++.+++.+...||+--.|-.-|.
T Consensus 20 ~~g~~~liv~~~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGs~~D~ 92 (349)
T cd08550 20 TFGSKVAVVGGKTVLKKSRPRFEAALAKSIIVVDVIVFGGECSTEEVVKALCGAEEQEADVIIGVGGGKTLDT 92 (349)
T ss_pred HcCCeEEEEEChHHHHHHHHHHHHHHHhcCCeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecCcHHHHH
Confidence 346788888875322 123456666665433221111233446777888889999999999999888877765
No 227
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=23.52 E-value=4e+02 Score=21.60 Aligned_cols=64 Identities=6% Similarity=0.051 Sum_probs=40.9
Q ss_pred cHHHHHHHHHHHHHCCCcEEeecC---C-CCCCchhHHhhh---hhhccCceecC---CCCchhHHHHHHHHHH
Q psy12654 50 SVTESIQAHLLAKQNGWGTMVSHR---S-GETEDNFIADLV---VGLSTGQIKTG---APCRSERLAKYNQILR 113 (133)
Q Consensus 50 TvTe~lea~~~a~~~g~~~vvS~r---s-GETeD~~iadLA---Vgl~a~~iK~G---~p~r~Er~aKyN~LLr 113 (133)
.+..+.+++++|++.|+.+.++.- . ..++.+++.+++ ...|+..|-+. +-..-+++..+=+.++
T Consensus 117 ~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~ 190 (273)
T cd07941 117 NLAMIRDSVAYLKSHGREVIFDAEHFFDGYKANPEYALATLKAAAEAGADWLVLCDTNGGTLPHEIAEIVKEVR 190 (273)
T ss_pred HHHHHHHHHHHHHHcCCeEEEeEEeccccCCCCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 345667899999999999888533 2 255677888776 66677776442 2234455555444443
No 228
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=23.51 E-value=88 Score=22.65 Aligned_cols=33 Identities=21% Similarity=0.272 Sum_probs=23.9
Q ss_pred cccceehccccccHHHHHHHHHHHHHCCCcEEe
Q psy12654 38 CNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMV 70 (133)
Q Consensus 38 ~na~llK~nQigTvTe~lea~~~a~~~g~~~vv 70 (133)
.+=+||=.+.-|.-.-.+++++.|++.|..+|.
T Consensus 103 ~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIa 135 (138)
T PF13580_consen 103 PGDVLIVISNSGNSPNVIEAAEEAKERGMKVIA 135 (138)
T ss_dssp TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEE
Confidence 334455578888888899999999999998874
No 229
>KOG0559|consensus
Probab=23.41 E-value=55 Score=29.41 Aligned_cols=22 Identities=55% Similarity=0.771 Sum_probs=19.1
Q ss_pred CCchhHHHHHHHH-HHHHHHhCC
Q psy12654 99 PCRSERLAKYNQI-LRIEEELGA 120 (133)
Q Consensus 99 p~r~Er~aKyN~L-LrIeeelg~ 120 (133)
|.|+||-.|-||+ +||.+.|.+
T Consensus 224 ~~R~E~RVkMnRmR~RIA~RLKd 246 (457)
T KOG0559|consen 224 PSRSERRVKMNRMRLRIAERLKD 246 (457)
T ss_pred CCcchhhhhhHHHHHHHHHHHHh
Confidence 4688999999998 899999965
No 230
>cd06842 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA. This subfamily is composed of the hypothetical Rhizobium sp. protein Y4yA and similar uncharacterized bacterial proteins. These proteins are homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarboxylases.
Probab=23.35 E-value=2.3e+02 Score=24.56 Aligned_cols=46 Identities=11% Similarity=0.133 Sum_probs=33.1
Q ss_pred hhhhhhcCCCeEEecCcccccCHHHHHHHHhhcccc---cceehccccc
Q psy12654 4 FQLNDFAPEPIQIVGDDLTVTNPKRIATAVEKKACN---CLLLKVNQIG 49 (133)
Q Consensus 4 ~~~~~~~~~~iqivGDDl~vTn~~ri~~~i~~~~~n---a~llK~nQig 49 (133)
..|.++.+..+.|+--+....|.++++++..+...+ ...+|-|..-
T Consensus 2 ~~l~~~~~TP~~v~d~~~l~~N~~~l~~~~~~~~~~~~~~yavKaN~~~ 50 (423)
T cd06842 2 VALVEAYGSPLNVLFPQTFRENIAALRAVLDRHGVDGRVYFARKANKSL 50 (423)
T ss_pred hHHHHhhCCCEEEEcHHHHHHHHHHHHHHHHHhCCCeEEEEEeccCCCH
Confidence 345566788899999999999999999987653322 3346777743
No 231
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=23.34 E-value=3.1e+02 Score=20.56 Aligned_cols=74 Identities=19% Similarity=0.129 Sum_probs=53.0
Q ss_pred hcCCCeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHhhhhh
Q psy12654 9 FAPEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIADLVVG 88 (133)
Q Consensus 9 ~~~~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iadLAVg 88 (133)
..+.+|=+||-.-..-+.+.+...+. +=|+.-.+.+..|.-+.++.++..|+.++|+.- ...++|=.
T Consensus 75 ~~~~~Iavv~~~~~~~~~~~~~~ll~------~~i~~~~~~~~~e~~~~i~~~~~~G~~viVGg~-------~~~~~A~~ 141 (176)
T PF06506_consen 75 KYGPKIAVVGYPNIIPGLESIEELLG------VDIKIYPYDSEEEIEAAIKQAKAEGVDVIVGGG-------VVCRLARK 141 (176)
T ss_dssp CCTSEEEEEEESS-SCCHHHHHHHHT-------EEEEEEESSHHHHHHHHHHHHHTT--EEEESH-------HHHHHHHH
T ss_pred hcCCcEEEEecccccHHHHHHHHHhC------CceEEEEECCHHHHHHHHHHHHHcCCcEEECCH-------HHHHHHHH
Confidence 34578889999888877888888663 346666777889999999999999999999854 56777765
Q ss_pred hccCcee
Q psy12654 89 LSTGQIK 95 (133)
Q Consensus 89 l~a~~iK 95 (133)
.|...+-
T Consensus 142 ~gl~~v~ 148 (176)
T PF06506_consen 142 LGLPGVL 148 (176)
T ss_dssp TTSEEEE
T ss_pred cCCcEEE
Confidence 5444443
No 232
>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis. Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als
Probab=23.29 E-value=2.3e+02 Score=22.16 Aligned_cols=41 Identities=12% Similarity=0.038 Sum_probs=30.3
Q ss_pred HHHHHHHHHCCCcEEeecCCC---CCCchhHHhhhhhhccCcee
Q psy12654 55 IQAHLLAKQNGWGTMVSHRSG---ETEDNFIADLVVGLSTGQIK 95 (133)
Q Consensus 55 lea~~~a~~~g~~~vvS~rsG---ETeD~~iadLAVgl~a~~iK 95 (133)
.+.++..-+.|.-+|+..-.| .+.|...+.+|..+++..+-
T Consensus 108 ~~~l~~~l~~g~ipVi~g~~g~~~~~sD~~A~~lA~~l~a~~li 151 (229)
T cd04239 108 RRRAIRHLEKGRIVIFGGGTGNPGFTTDTAAALRAEEIGADVLL 151 (229)
T ss_pred HHHHHHHHhCCCEEEEeCccCCCCCCcHHHHHHHHHHcCCCEEE
Confidence 455666677888888876543 35888889999999998653
No 233
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=23.19 E-value=1.2e+02 Score=25.16 Aligned_cols=35 Identities=31% Similarity=0.243 Sum_probs=26.6
Q ss_pred ccHHHHHHHHHHHHHCCCcE----EeecCCCCCCchhHHhh
Q psy12654 49 GSVTESIQAHLLAKQNGWGT----MVSHRSGETEDNFIADL 85 (133)
Q Consensus 49 gTvTe~lea~~~a~~~g~~~----vvS~rsGETeD~~iadL 85 (133)
.|..+.+++++.+++.|+.+ |+++ |||.++.+.++
T Consensus 178 ~s~~~~l~~i~~a~~~Gi~v~~~~iiGl--gEt~ed~~~~l 216 (340)
T TIGR03699 178 ISSEEWLEVMETAHKLGLPTTATMMFGH--VETLEDRIEHL 216 (340)
T ss_pred CCHHHHHHHHHHHHHcCCCccceeEeeC--CCCHHHHHHHH
Confidence 37778899999999999864 4554 89987766554
No 234
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=23.15 E-value=2.5e+02 Score=22.59 Aligned_cols=64 Identities=19% Similarity=0.145 Sum_probs=40.1
Q ss_pred hcCCCeEEec-CcccccCHHHHHHHHhhcccccceehc--cccccHHHHHHHHHHHHHCCCcEEeec
Q psy12654 9 FAPEPIQIVG-DDLTVTNPKRIATAVEKKACNCLLLKV--NQIGSVTESIQAHLLAKQNGWGTMVSH 72 (133)
Q Consensus 9 ~~~~~iqivG-DDl~vTn~~ri~~~i~~~~~na~llK~--nQigTvTe~lea~~~a~~~g~~~vvS~ 72 (133)
..|.++..+. |+-+..+++.+.+.+++.....+++-. |-.|++.+.=+.+++|+++|..+++=.
T Consensus 95 ~~g~~~~~v~~~~~~~~~~~~l~~~i~~~~~~~v~i~~~~~~~G~~~~~~~i~~~a~~~~~~li~D~ 161 (356)
T cd06451 95 RYGADVDVVEKPWGEAVSPEEIAEALEQHDIKAVTLTHNETSTGVLNPLEGIGALAKKHDALLIVDA 161 (356)
T ss_pred HhCCCeEEeecCCCCCCCHHHHHHHHhccCCCEEEEeccCCCcccccCHHHHHHHHHhcCCEEEEee
Confidence 3455555554 322455789999988762333454422 337787766567778899998776643
No 235
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=22.92 E-value=2.4e+02 Score=24.33 Aligned_cols=98 Identities=19% Similarity=0.172 Sum_probs=61.4
Q ss_pred CCeEEecCccc-----ccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHhhh
Q psy12654 12 EPIQIVGDDLT-----VTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIADLV 86 (133)
Q Consensus 12 ~~iqivGDDl~-----vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iadLA 86 (133)
..|-|+|.-.. .-|...|++.+++-. |++|.+-+--.+++-++.+.++...++++++.|.. .-..|-
T Consensus 162 ~~VNliG~~~~~~~~~~~d~~ei~~lL~~~G-----i~v~~~~~~~~~~~ei~~~~~A~lniv~~~~~g~~---~a~~Le 233 (426)
T cd01972 162 DSVNIIGLWGGPERTEQEDVDEFKRLLNELG-----LRVNAIIAGGCSVEELERASEAAANVTLCLDLGYY---LGAALE 233 (426)
T ss_pred CCEEEEccCCCccccccccHHHHHHHHHHcC-----CeEEEEeCCCCCHHHHHhcccCCEEEEEChhHHHH---HHHHHH
Confidence 46889997543 245577888777543 44444444434556666677888888888765532 222344
Q ss_pred hhhccCceecCCCCchhHHHHHHHHHHHHHHhC
Q psy12654 87 VGLSTGQIKTGAPCRSERLAKYNQILRIEEELG 119 (133)
Q Consensus 87 Vgl~a~~iK~G~p~r~Er~aKyN~LLrIeeelg 119 (133)
=-.|.++++.+.|-+-+-+.++ |..|.+.+|
T Consensus 234 e~~GiP~~~~~~P~G~~~T~~~--l~~ia~~~g 264 (426)
T cd01972 234 QRFGVPEIKAPQPYGIEATDKW--LREIAKVLG 264 (426)
T ss_pred HHhCCCeEecCCccCHHHHHHH--HHHHHHHhC
Confidence 5678899998888887777665 333444444
No 236
>PLN02766 coniferyl-aldehyde dehydrogenase
Probab=22.62 E-value=86 Score=27.85 Aligned_cols=69 Identities=13% Similarity=0.117 Sum_probs=41.5
Q ss_pred hhcccccceehccccccHHHHHHHHHHHHHCCC----cEEeecCCCCCCchhHHhhhhhhccCce-ecCCCCchhHHHH
Q psy12654 34 EKKACNCLLLKVNQIGSVTESIQAHLLAKQNGW----GTMVSHRSGETEDNFIADLVVGLSTGQI-KTGAPCRSERLAK 107 (133)
Q Consensus 34 ~~~~~na~llK~nQigTvTe~lea~~~a~~~g~----~~vvS~rsGETeD~~iadLAVgl~a~~i-K~G~p~r~Er~aK 107 (133)
.--+.|++++||+-....|- ....++.++.|+ --+|...+.|..+..+.|-. ...| =+|++.-|.++.|
T Consensus 182 ALaaGN~VVlKPs~~tp~~~-~~l~~~~~~aGlP~gvv~~v~g~~~~~~~~L~~~p~----v~~V~FTGS~~~G~~i~~ 255 (501)
T PLN02766 182 ALAAGCTMVVKPAEQTPLSA-LFYAHLAKLAGVPDGVINVVTGFGPTAGAAIASHMD----VDKVSFTGSTEVGRKIMQ 255 (501)
T ss_pred HHHcCCEEEEeCCCCchHHH-HHHHHHHHhcCCCcCcEEEEecCchHHHHHHhcCCC----CCEEEEECcHHHHHHHHH
Confidence 33489999999998876664 467788888764 34454333333333333322 2233 3688777777665
No 237
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=22.58 E-value=1.9e+02 Score=25.59 Aligned_cols=50 Identities=18% Similarity=0.284 Sum_probs=39.8
Q ss_pred CHHHHHHHHhhcccccceehccccccHH-HHHHHHHHHHHCCCcEEeecCCC
Q psy12654 25 NPKRIATAVEKKACNCLLLKVNQIGSVT-ESIQAHLLAKQNGWGTMVSHRSG 75 (133)
Q Consensus 25 n~~ri~~~i~~~~~na~llK~nQigTvT-e~lea~~~a~~~g~~~vvS~rsG 75 (133)
+++.|+-.++. .+.+++|.--=.|.+. +.+++++.+.+.|..++++.|..
T Consensus 288 d~~~l~~~~~~-g~~GiVleg~G~G~vp~~~~~~l~~a~~~GipVV~tSqc~ 338 (404)
T TIGR02153 288 SPEIIEFLVDK-GYKGIVIEGTGLGHVSEDWIPSIKRATDDGVPVVMTSQCL 338 (404)
T ss_pred CHHHHHHHHhC-CCCEEEEeeECCCCCCHHHHHHHHHHHHCCCEEEEeCCCC
Confidence 46777766654 4789999877666665 78899999999999999999883
No 238
>TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase. This bifunctional isomerase is a member of the larger PGI superfamily and only distantly related to other glucose-6-phosphate isomerases. The family is limited to the archaea.
Probab=22.57 E-value=1.6e+02 Score=24.74 Aligned_cols=44 Identities=23% Similarity=0.320 Sum_probs=34.2
Q ss_pred cccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHhhh
Q psy12654 38 CNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIADLV 86 (133)
Q Consensus 38 ~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iadLA 86 (133)
.+.++|-.+.-|+-.|++++++.|++.|..++.-...| .+++++
T Consensus 66 ~~dlvI~iS~SG~t~e~~~a~~~A~~~g~~ii~iT~~g-----~L~~~a 109 (308)
T TIGR02128 66 GKTLLIAVSYSGNTEETLSAVEEAKKKGAKVIAITSGG-----RLEEMA 109 (308)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHcCCEEEEECCCc-----HHHHHH
Confidence 45577778999999999999999999999876555322 366665
No 239
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=22.51 E-value=1.3e+02 Score=25.10 Aligned_cols=52 Identities=17% Similarity=0.139 Sum_probs=39.0
Q ss_pred ccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHhhhhhhc
Q psy12654 39 NCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIADLVVGLS 90 (133)
Q Consensus 39 na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iadLAVgl~ 90 (133)
+-++|=.++-|.-.+.+++++.|++.|..++.=....++.=.-++|..+-+.
T Consensus 127 ~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tIaIT~~~~s~La~~aD~~I~~~ 178 (291)
T TIGR00274 127 NDVVVGIAASGRTPYVIAGLQYARSLGALTISIACNPKSAASEIADIAIETI 178 (291)
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEecC
Confidence 4455558999999999999999999998777655555554455677776553
No 240
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=22.43 E-value=4.2e+02 Score=23.43 Aligned_cols=93 Identities=12% Similarity=0.113 Sum_probs=55.6
Q ss_pred CCeEEecCcccccCHHHHHHHHhhcccccceeh----------cc--ccccHHHHHHHHHHHHHCCCcEEeecCCCCCCc
Q psy12654 12 EPIQIVGDDLTVTNPKRIATAVEKKACNCLLLK----------VN--QIGSVTESIQAHLLAKQNGWGTMVSHRSGETED 79 (133)
Q Consensus 12 ~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK----------~n--QigTvTe~lea~~~a~~~g~~~vvS~rsGETeD 79 (133)
.+|-|+|+-+..-|.+.|++.+++-..+..++= |. -+++--.+++-++.+-++...+++++.+|..
T Consensus 170 ~~VNlig~~~~~~D~~elk~lL~~~Gl~v~~l~d~~s~d~~~~~~~~~~~~gg~tleei~~~~~A~lniv~~~~~g~~-- 247 (461)
T TIGR02931 170 DKINLITGWVNPGDVKELKHLLEEMDIEANVLFEIESFDSPLMPDKSAVSHGSTTIEDLTDTANAKGTIALNRYEGMK-- 247 (461)
T ss_pred CcEEEECCCCChhhHHHHHHHHHHcCCceEEeeccccccCCCCCcccccCCCCCcHHHHHhhccCcEEEEEcHhhHHH--
Confidence 568999975433456667777776554444331 00 0011112455556667777888888876642
Q ss_pred hhHHh-hhhhhccCceecCCCCchhHHHHH
Q psy12654 80 NFIAD-LVVGLSTGQIKTGAPCRSERLAKY 108 (133)
Q Consensus 80 ~~iad-LAVgl~a~~iK~G~p~r~Er~aKy 108 (133)
+|+ |-=-.+.++++...|-+-+.+.++
T Consensus 248 --~A~~Lee~~giP~~~~~~piGi~~T~~f 275 (461)
T TIGR02931 248 --AADYLQKKFDVPAIIGPTPIGIRNTDTF 275 (461)
T ss_pred --HHHHHHHHhCCCeeccCCCcchHHHHHH
Confidence 333 333667788887778777777665
No 241
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=22.38 E-value=1.4e+02 Score=21.17 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=15.5
Q ss_pred ccccceehccccccHHHHHHHHHHHHHCCCcEE
Q psy12654 37 ACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTM 69 (133)
Q Consensus 37 ~~na~llK~nQigTvTe~lea~~~a~~~g~~~v 69 (133)
.+.++++-+. ++.-++.+.|+++|+.++
T Consensus 79 g~~~v~~~~g-----~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 79 GVKAVWLQPG-----AESEELIEAAREAGIRVI 106 (116)
T ss_dssp T-SEEEE-TT-----S--HHHHHHHHHTT-EEE
T ss_pred CCCEEEEEcc-----hHHHHHHHHHHHcCCEEE
Confidence 4666666555 445567777888887755
No 242
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=22.27 E-value=3.3e+02 Score=20.07 Aligned_cols=65 Identities=8% Similarity=-0.113 Sum_probs=49.9
Q ss_pred hhhcCCCeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHC---CCcEEeecCC
Q psy12654 7 NDFAPEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQN---GWGTMVSHRS 74 (133)
Q Consensus 7 ~~~~~~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~---g~~~vvS~rs 74 (133)
-...|-++.-.|-|+ -++.+..++.+..+..+.|.-....+...+-+.++..++. +..++++..-
T Consensus 27 lr~~G~eVi~LG~~v---p~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~~~i~vGG~~ 94 (137)
T PRK02261 27 LTEAGFEVINLGVMT---SQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIEAGLGDILLYVGGNL 94 (137)
T ss_pred HHHCCCEEEECCCCC---CHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhcCCCCCeEEEECCC
Confidence 344677777788777 4678888888889999999877777888888888888887 5567777764
No 243
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=22.24 E-value=2.3e+02 Score=20.11 Aligned_cols=40 Identities=10% Similarity=0.199 Sum_probs=31.2
Q ss_pred HHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcE
Q psy12654 29 IATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGT 68 (133)
Q Consensus 29 i~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~ 68 (133)
+++..++..-..+.|++.+--+....+.+...++++|+.-
T Consensus 76 l~~~~~~~~~~~v~I~aD~~~~~~~vv~v~d~~~~aG~~~ 115 (122)
T TIGR02803 76 LDALTEGDKDTTIFFRADKTVDYGDLMKVMNLLRQAGYLK 115 (122)
T ss_pred HHHHHhcCCCceEEEEcCCCCCHHHHHHHHHHHHHcCCCE
Confidence 3333444455679999999999999999999999999863
No 244
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=22.22 E-value=1e+02 Score=20.65 Aligned_cols=64 Identities=11% Similarity=0.139 Sum_probs=45.8
Q ss_pred EEecCcccccCHHHHHHHHh----hcccccceehccccccH-----HHHHHHHHHHHHCCCcEEeecCCCCCCc
Q psy12654 15 QIVGDDLTVTNPKRIATAVE----KKACNCLLLKVNQIGSV-----TESIQAHLLAKQNGWGTMVSHRSGETED 79 (133)
Q Consensus 15 qivGDDl~vTn~~ri~~~i~----~~~~na~llK~nQigTv-----Te~lea~~~a~~~g~~~vvS~rsGETeD 79 (133)
.+-| +++.+|.+.++..+. +..+..++|..+++..+ --..+..+.+++.|..+++++.+.+..+
T Consensus 13 ~~~G-~l~f~~~~~~~~~l~~~~~~~~~~~vilDls~v~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~~~v~~ 85 (100)
T cd06844 13 RLEG-ELDHHSVEQFKEELLHNITNVAGKTIVIDISALEFMDSSGTGVLLERSRLAEAVGGQFVLTGISPAVRI 85 (100)
T ss_pred EEEE-EecHhhHHHHHHHHHHHHHhCCCCEEEEECCCCcEEcHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHH
Confidence 4555 599999998887553 23467888887776543 2346677888999999999988766543
No 245
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=22.08 E-value=4.4e+02 Score=21.45 Aligned_cols=64 Identities=13% Similarity=0.182 Sum_probs=43.6
Q ss_pred cHHHHHHHHHHHHHCCCcEEeecCC-CCCCchhHHhhh---hhhccCcee---cCCCCchhHHHHHHHHHH
Q psy12654 50 SVTESIQAHLLAKQNGWGTMVSHRS-GETEDNFIADLV---VGLSTGQIK---TGAPCRSERLAKYNQILR 113 (133)
Q Consensus 50 TvTe~lea~~~a~~~g~~~vvS~rs-GETeD~~iadLA---Vgl~a~~iK---~G~p~r~Er~aKyN~LLr 113 (133)
.+.++.++++.|++.|+.+.++--. ..+.++++.+++ +..++..|- +.+-..-+++.++=+.++
T Consensus 107 ~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~ 177 (266)
T cd07944 107 EFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIVDSFGSMYPEDIKRIISLLR 177 (266)
T ss_pred cHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 6788999999999999988887322 225677888775 455666663 344445676666655554
No 246
>TIGR03857 F420_MSMEG_2249 probable F420-dependent oxidoreductase, MSMEG_2249 family. Coenzyme F420 has a limited phylogenetic distribution, including methanogenic archaea, Mycobacterium tuberculosis and related species, Colwellia psychrerythraea 34H, Rhodopseudomonas palustris HaA2, and others. Partial phylogenetic profiling identifies protein subfamilies, within the larger family called luciferase-like monooxygenanases (pfam00296), that appear only in F420-positive genomes and are likely to be F420-dependent. This model describes a distinctive subfamily, found only in F420-biosynthesizing members of the Actinobacteria of the bacterial luciferase-like monooxygenase (LLM) superfamily.
Probab=22.08 E-value=2.2e+02 Score=23.85 Aligned_cols=51 Identities=18% Similarity=0.285 Sum_probs=33.6
Q ss_pred ccccHHHHHHHHHHHHHCCCcEE-eecCCCCCCchhHHhhhhhhccCceecCC
Q psy12654 47 QIGSVTESIQAHLLAKQNGWGTM-VSHRSGETEDNFIADLVVGLSTGQIKTGA 98 (133)
Q Consensus 47 QigTvTe~lea~~~a~~~g~~~v-vS~rsGETeD~~iadLAVgl~a~~iK~G~ 98 (133)
--+.+.+.++.++.|.+.||..+ ++.+-+ ..|.+..--+++..+..|++|.
T Consensus 9 ~~~~~~~~~~~a~~AE~~Gfd~vw~~E~~~-~~d~~~~laa~Aa~T~rI~lgt 60 (329)
T TIGR03857 9 RGADPAQAIDEARAAERLGFGTVYLSERWN-LKEAGVVAGAIGAVTSRVRIAT 60 (329)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEecccCC-cCCHHHHHHHHHHhCCeeEEEE
Confidence 34567888999999999999965 554432 2344443345566777777763
No 247
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=22.02 E-value=2e+02 Score=24.19 Aligned_cols=50 Identities=16% Similarity=0.220 Sum_probs=39.0
Q ss_pred CHHHHHHHHhhcccccceehccccccHH-HHHHHHHHHHHCCCcEEeecCCC
Q psy12654 25 NPKRIATAVEKKACNCLLLKVNQIGSVT-ESIQAHLLAKQNGWGTMVSHRSG 75 (133)
Q Consensus 25 n~~ri~~~i~~~~~na~llK~nQigTvT-e~lea~~~a~~~g~~~vvS~rsG 75 (133)
+++.++.+++ ..+.+++|.-.=.|.+. +.+++++.+.+.|..+|++.|.+
T Consensus 224 ~~~~l~~~~~-~~~~GlVl~~~G~Gn~p~~~~~~l~~a~~~gipVV~~sq~~ 274 (323)
T smart00870 224 DAELLDALLD-SGAKGLVLEGTGAGNVPPDLLEALKEALERGIPVVRTSRCL 274 (323)
T ss_pred CHHHHHHHHh-CCCCEEEEEeeCCCCCCHHHHHHHHHHHHCCCEEEEeccCC
Confidence 4677766665 45788888776666665 68899999999999999998874
No 248
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=21.93 E-value=1e+02 Score=27.08 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=26.8
Q ss_pred cccccHHHHHHHHHHHHHCCCcEE----eecCCCCC
Q psy12654 46 NQIGSVTESIQAHLLAKQNGWGTM----VSHRSGET 77 (133)
Q Consensus 46 nQigTvTe~lea~~~a~~~g~~~v----vS~rsGET 77 (133)
.+.||..|..+.++.|+++|+.+| +.|.++++
T Consensus 75 ~~fGt~~dl~~Li~~~H~~Gi~vi~D~V~NH~~~~~ 110 (479)
T PRK09441 75 TKYGTKEELLNAIDALHENGIKVYADVVLNHKAGAD 110 (479)
T ss_pred cCcCCHHHHHHHHHHHHHCCCEEEEEECcccccCCC
Confidence 368899999999999999999875 57877654
No 249
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=21.82 E-value=1.5e+02 Score=23.09 Aligned_cols=47 Identities=15% Similarity=0.161 Sum_probs=33.4
Q ss_pred cHHHHHHHHHHHHHCCCcEEeecC-CCC--CCchhHHhh---hhhhccCceec
Q psy12654 50 SVTESIQAHLLAKQNGWGTMVSHR-SGE--TEDNFIADL---VVGLSTGQIKT 96 (133)
Q Consensus 50 TvTe~lea~~~a~~~g~~~vvS~r-sGE--TeD~~iadL---AVgl~a~~iK~ 96 (133)
.+.+++++++.+++.|+.+.++-- ... +..+++.++ +..+++..|-+
T Consensus 113 ~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l 165 (265)
T cd03174 113 DLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISL 165 (265)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 578889999999999999988872 332 555555544 55666666554
No 250
>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.
Probab=21.78 E-value=1.1e+02 Score=27.11 Aligned_cols=81 Identities=15% Similarity=0.222 Sum_probs=55.6
Q ss_pred cccccCHHHHHHHHhhcccccceehc----cccccHHH-HHHHHHHHHHCCCcEEeecCCCC----------------CC
Q psy12654 20 DLTVTNPKRIATAVEKKACNCLLLKV----NQIGSVTE-SIQAHLLAKQNGWGTMVSHRSGE----------------TE 78 (133)
Q Consensus 20 Dl~vTn~~ri~~~i~~~~~na~llK~----nQigTvTe-~lea~~~a~~~g~~~vvS~rsGE----------------Te 78 (133)
|-..|+.+.+++.+++...+-+|.-. -..+-+.| ..+..+++++.|+.-+|..--|= --
T Consensus 135 d~l~td~~~ie~~i~~~G~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ~~~~~~~i~~a~~~GRv 214 (389)
T PF05889_consen 135 DELITDLEAIEAKIEELGADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQSSKCMHLIQQAWRVGRV 214 (389)
T ss_dssp TEEEEHHHHHHHHHHHHCGGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGTTTTT-HHHHHHHHHHHHHSTC
T ss_pred CeeeccHHHHHHHHHHhCCCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccchhhhHHHHHHHHHHHHhcCCc
Confidence 56789999999999876544333323 25667778 88999999999999999887765 33
Q ss_pred chhH----HhhhhhhccCceecCCCC
Q psy12654 79 DNFI----ADLVVGLSTGQIKTGAPC 100 (133)
Q Consensus 79 D~~i----adLAVgl~a~~iK~G~p~ 100 (133)
|.+. +||.|+.|-.-|-..+|+
T Consensus 215 da~vqS~dkNF~VPvGgai~As~~~~ 240 (389)
T PF05889_consen 215 DAFVQSTDKNFMVPVGGAIMASFDPS 240 (389)
T ss_dssp SEEEEEHHHHHCEESSHEEEEESSHH
T ss_pred ceeeeecCCCEEecCCCcEEEecCHH
Confidence 3332 589999988888766553
No 251
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=21.71 E-value=2.6e+02 Score=20.59 Aligned_cols=63 Identities=17% Similarity=0.186 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHCCCcE-EeecCCCCCCc-----------hhHHhhhh--hhccCceecCCCCch-------hHHHHHHH
Q psy12654 52 TESIQAHLLAKQNGWGT-MVSHRSGETED-----------NFIADLVV--GLSTGQIKTGAPCRS-------ERLAKYNQ 110 (133)
Q Consensus 52 Te~lea~~~a~~~g~~~-vvS~rsGETeD-----------~~iadLAV--gl~a~~iK~G~p~r~-------Er~aKyN~ 110 (133)
-+++++++.++++|+.+ ++|.|+..... ..+.+..- ++.-..|-.|.|.+| .|.-|.+.
T Consensus 27 ~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipYd~l~~~kp~~~~~~~~~dD~~ir~~~ 106 (126)
T TIGR01689 27 LAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPYDEIYVGKPWCGHDGFYVDDRAIRPSE 106 (126)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCCceEEeCCCcCCCCCceecchhhCHHH
Confidence 47888888888888854 56778876654 12222222 444455677887533 45566666
Q ss_pred HHHH
Q psy12654 111 ILRI 114 (133)
Q Consensus 111 LLrI 114 (133)
+.+.
T Consensus 107 ~~~~ 110 (126)
T TIGR01689 107 FSSL 110 (126)
T ss_pred HHhc
Confidence 6543
No 252
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=21.64 E-value=3.9e+02 Score=24.47 Aligned_cols=74 Identities=16% Similarity=0.112 Sum_probs=53.4
Q ss_pred hhcCCCeEEecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHhhhh
Q psy12654 8 DFAPEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIADLVV 87 (133)
Q Consensus 8 ~~~~~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iadLAV 87 (133)
...+.++-|||-.-.+...+.+...+. +=|+.-.+-+-.|+-++++.+++.|+.+||+ |...+|+|+
T Consensus 104 ~~~~~~iavv~~~~~~~~~~~~~~~l~------~~i~~~~~~~~~e~~~~v~~lk~~G~~~vvG-------~~~~~~~A~ 170 (538)
T PRK15424 104 RKLTSSIGVVTYQETIPALVAFQKTFN------LRIEQRSYVTEEDARGQINELKANGIEAVVG-------AGLITDLAE 170 (538)
T ss_pred HhcCCcEEEEecCcccHHHHHHHHHhC------CceEEEEecCHHHHHHHHHHHHHCCCCEEEc-------CchHHHHHH
Confidence 345678889998776665655665543 3355566678889999999999999999995 457789998
Q ss_pred hhccCce
Q psy12654 88 GLSTGQI 94 (133)
Q Consensus 88 gl~a~~i 94 (133)
-.+-..+
T Consensus 171 ~~g~~g~ 177 (538)
T PRK15424 171 EAGMTGI 177 (538)
T ss_pred HhCCceE
Confidence 5554444
No 253
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=21.54 E-value=2.6e+02 Score=23.77 Aligned_cols=69 Identities=16% Similarity=0.232 Sum_probs=49.4
Q ss_pred CCeEEecCccccc-C--HHHHHHHHhhccccccee-hccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCch
Q psy12654 12 EPIQIVGDDLTVT-N--PKRIATAVEKKACNCLLL-KVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDN 80 (133)
Q Consensus 12 ~~iqivGDDl~vT-n--~~ri~~~i~~~~~na~ll-K~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~ 80 (133)
.++.||.|.-... + .+++...+++......++ .+...-|++...+.++.+++.+..+||+--.|-.-|.
T Consensus 27 kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~ 99 (383)
T cd08186 27 SKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREFGAQAVIAIGGGSPIDS 99 (383)
T ss_pred CEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCccHHHH
Confidence 6888999865432 3 367777777655444444 2344458888899999999999999998887777654
No 254
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=21.37 E-value=4e+02 Score=20.78 Aligned_cols=96 Identities=11% Similarity=0.243 Sum_probs=55.3
Q ss_pred CCCeEEecCcccccCHHHHHHHHhhcccccceehcc----------------ccccHHHHHHHHHHHHHCCCc-EEeecC
Q psy12654 11 PEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVN----------------QIGSVTESIQAHLLAKQNGWG-TMVSHR 73 (133)
Q Consensus 11 ~~~iqivGDDl~vTn~~ri~~~i~~~~~na~llK~n----------------QigTvTe~lea~~~a~~~g~~-~vvS~r 73 (133)
|....++|- .+..||+.+.+..++-..+.+.+-.. +..|.-++++.++.+.+.|+. ++++++
T Consensus 93 G~~~v~ig~-~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i~v~~i 171 (243)
T cd04731 93 GADKVSINS-AAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSM 171 (243)
T ss_pred CCceEEECc-hhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCCCCEEEEecc
Confidence 434446664 34467877777555432233443221 112345677888888899988 566555
Q ss_pred CCCC-----CchhHHhhhhhhccCceecCCCCchhHHHH
Q psy12654 74 SGET-----EDNFIADLVVGLSTGQIKTGAPCRSERLAK 107 (133)
Q Consensus 74 sGET-----eD~~iadLAVgl~a~~iK~G~p~r~Er~aK 107 (133)
..+. .-+++..+.=.+..+-|-.|+....|.+.+
T Consensus 172 ~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~ 210 (243)
T cd04731 172 DRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVE 210 (243)
T ss_pred CCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHH
Confidence 4221 114556665556788888888876665444
No 255
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=21.36 E-value=1.1e+02 Score=25.95 Aligned_cols=48 Identities=19% Similarity=0.228 Sum_probs=35.6
Q ss_pred ccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEe
Q psy12654 23 VTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMV 70 (133)
Q Consensus 23 vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vv 70 (133)
.-+++.+++.++++..=-++--||-.|++-+.=+.+++|+++|.-+++
T Consensus 191 ~~d~~~l~~~i~~~t~~v~l~~pn~tG~v~~l~~I~~~a~~~~~~~iv 238 (447)
T PRK00451 191 VTDLEALEAAVDDDTAAVVVQYPNFFGVIEDLEEIAEIAHAGGALFIV 238 (447)
T ss_pred CCCHHHHHHhcCCCeEEEEEECCCCCCeeCCHHHHHHHHHHCCCEEEE
Confidence 346888888887654322333578889998888889999999987766
No 256
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=21.36 E-value=1.4e+02 Score=23.59 Aligned_cols=50 Identities=14% Similarity=0.165 Sum_probs=35.8
Q ss_pred ccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHhhhh
Q psy12654 37 ACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIADLVV 87 (133)
Q Consensus 37 ~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iadLAV 87 (133)
..+.++|=.++-|.-.+.+++++.|+++|..++.=.. .++.=.-++|...
T Consensus 174 ~~~D~vI~iS~sG~t~~~~~~~~~ak~~g~~vI~IT~-~~s~l~~~ad~~l 223 (284)
T PRK11302 174 SDGDVVVLISHTGRTKSLVELAQLARENGATVIAITS-AGSPLAREATLAL 223 (284)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEECC-CCChhHHhCCEEE
Confidence 3455666689999999999999999999998887664 3333333344433
No 257
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=21.30 E-value=85 Score=25.03 Aligned_cols=42 Identities=21% Similarity=0.226 Sum_probs=30.2
Q ss_pred HHHHHHHHHHCCCcEEeecCCCCCCchhHHhhhhhhccCceec
Q psy12654 54 SIQAHLLAKQNGWGTMVSHRSGETEDNFIADLVVGLSTGQIKT 96 (133)
Q Consensus 54 ~lea~~~a~~~g~~~vvS~rsGETeD~~iadLAVgl~a~~iK~ 96 (133)
.-++++.|+++|+.+++.|-.-+|- .+|....-.+....|++
T Consensus 164 l~~~~~~A~~~G~aI~Igh~~p~Tl-~~L~~~~~~l~~~gi~l 205 (213)
T PF04748_consen 164 LDQAARIARKQGSAIAIGHPRPETL-EALEEWLPELEAQGIEL 205 (213)
T ss_dssp HHHHHHHHHCCSEEEEEEE-SCCHH-HHHHHHHHHHHHCTEEE
T ss_pred HHHHHHhhhhcCcEEEEEcCCHHHH-HHHHHHHhHHhhCCEEE
Confidence 4568899999999999999999986 46666655555444443
No 258
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=21.25 E-value=1.8e+02 Score=23.00 Aligned_cols=55 Identities=13% Similarity=0.234 Sum_probs=38.4
Q ss_pred cccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCC
Q psy12654 20 DLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGET 77 (133)
Q Consensus 20 Dl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGET 77 (133)
-|-|.||.+.-+.+.+-.++.+.+-+- +.....+.++..+++|..+-++=..+..
T Consensus 63 HLMv~~P~~~i~~~~~~g~~~i~~H~E---~~~~~~~~i~~ik~~g~k~GialnP~T~ 117 (201)
T PF00834_consen 63 HLMVENPERYIEEFAEAGADYITFHAE---ATEDPKETIKYIKEAGIKAGIALNPETP 117 (201)
T ss_dssp EEESSSGGGHHHHHHHHT-SEEEEEGG---GTTTHHHHHHHHHHTTSEEEEEE-TTS-
T ss_pred EeeeccHHHHHHHHHhcCCCEEEEccc---chhCHHHHHHHHHHhCCCEEEEEECCCC
Confidence 467889998777777777777777555 3345666777788899998888766543
No 259
>PRK15398 aldehyde dehydrogenase EutE; Provisional
Probab=21.11 E-value=36 Score=30.10 Aligned_cols=71 Identities=15% Similarity=0.081 Sum_probs=38.8
Q ss_pred HhhcccccceehccccccHHHHHHHHHHHH----HC----CCcEEeecCCCCCCchhHHhhhhhhccCceecCCCCchhH
Q psy12654 33 VEKKACNCLLLKVNQIGSVTESIQAHLLAK----QN----GWGTMVSHRSGETEDNFIADLVVGLSTGQIKTGAPCRSER 104 (133)
Q Consensus 33 i~~~~~na~llK~nQigTvTe~lea~~~a~----~~----g~~~vvS~rsGETeD~~iadLAVgl~a~~iK~G~p~r~Er 104 (133)
-.-.+.|+++|||+.....|-. ..+++.+ +. |.-.++...+.|..+.++.|--|. .-+=+|++.-+..
T Consensus 152 ~ALaaGN~VVlKps~~tp~t~~-~l~~ll~~~l~eaGlP~gvv~vv~g~~~~~~~~L~~~~~vd---~I~fTGS~~~G~~ 227 (465)
T PRK15398 152 SMLAAGNSVVFSPHPGAKKVSL-RAIELLNEAIVAAGGPENLVVTVAEPTIETAQRLMKHPGIA---LLVVTGGPAVVKA 227 (465)
T ss_pred HHHHhCCcEEEECCccchHHHH-HHHHHHHHHHHHcCCCCCeEEEecCCCHHHHHHHHcCCCcc---EEEeeCCHHHHHH
Confidence 3456899999999988766533 3444444 33 555555433323222233222111 1233588877777
Q ss_pred HHH
Q psy12654 105 LAK 107 (133)
Q Consensus 105 ~aK 107 (133)
+.+
T Consensus 228 v~~ 230 (465)
T PRK15398 228 AMK 230 (465)
T ss_pred HHH
Confidence 776
No 260
>PLN02656 tyrosine transaminase
Probab=21.08 E-value=3e+02 Score=23.20 Aligned_cols=50 Identities=6% Similarity=0.023 Sum_probs=34.0
Q ss_pred ccccCHHHHHHHHhhcccccceehccc-cccH---HHHHHHHHHHHHCCCcEEe
Q psy12654 21 LTVTNPKRIATAVEKKACNCLLLKVNQ-IGSV---TESIQAHLLAKQNGWGTMV 70 (133)
Q Consensus 21 l~vTn~~ri~~~i~~~~~na~llK~nQ-igTv---Te~lea~~~a~~~g~~~vv 70 (133)
-+.-+++.+.+.++++..-.++.-||+ .|++ .+.-+.+++|+++++-+++
T Consensus 154 ~~~~d~~~l~~~~~~~~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~ 207 (409)
T PLN02656 154 GWEVDLDAVEALADQNTVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIA 207 (409)
T ss_pred CCCCCHHHHHHHhccCceEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 345578888888776655556666754 3333 4777788999999876664
No 261
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=21.01 E-value=3.2e+02 Score=19.53 Aligned_cols=56 Identities=20% Similarity=0.257 Sum_probs=27.7
Q ss_pred HHHHHHHHCCCcEEeecCC-CCCCch----hHHhhhhhhccCceec----CCCCchhHHHHHHHHH
Q psy12654 56 QAHLLAKQNGWGTMVSHRS-GETEDN----FIADLVVGLSTGQIKT----GAPCRSERLAKYNQIL 112 (133)
Q Consensus 56 ea~~~a~~~g~~~vvS~rs-GETeD~----~iadLAVgl~a~~iK~----G~p~r~Er~aKyN~LL 112 (133)
+-++.+++.|+..||..|. ||..+- -+...|-.+|..++-. |.+ .-|.+..+-++|
T Consensus 18 ~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~-~~~~v~~f~~~l 82 (110)
T PF04273_consen 18 EDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAI-TEEDVEAFADAL 82 (110)
T ss_dssp HHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT---HHHHHHHHHHH
T ss_pred HHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCC-CHHHHHHHHHHH
Confidence 3444567799999999996 565332 2445555566555543 333 345555555553
No 262
>PLN00196 alpha-amylase; Provisional
Probab=20.87 E-value=1.1e+02 Score=27.04 Aligned_cols=33 Identities=15% Similarity=0.225 Sum_probs=28.2
Q ss_pred cccccHHHHHHHHHHHHHCCCcE----EeecCCCCCC
Q psy12654 46 NQIGSVTESIQAHLLAKQNGWGT----MVSHRSGETE 78 (133)
Q Consensus 46 nQigTvTe~lea~~~a~~~g~~~----vvS~rsGETe 78 (133)
...||-.|..++++.|+++|+.+ |+.|++++..
T Consensus 86 ~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH~~~~~~ 122 (428)
T PLN00196 86 SKYGNEAQLKSLIEAFHGKGVQVIADIVINHRTAEHK 122 (428)
T ss_pred ccCCCHHHHHHHHHHHHHCCCEEEEEECccCcccccc
Confidence 36899999999999999999997 5689886654
No 263
>PRK02271 methylenetetrahydromethanopterin reductase; Provisional
Probab=20.77 E-value=2.4e+02 Score=23.23 Aligned_cols=49 Identities=20% Similarity=0.232 Sum_probs=33.4
Q ss_pred cHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHhhhhhhccCceecCC
Q psy12654 50 SVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIADLVVGLSTGQIKTGA 98 (133)
Q Consensus 50 TvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iadLAVgl~a~~iK~G~ 98 (133)
...+.++.++.|.+.|+..+...-.--+.|.+..=-+++-.+..||+|.
T Consensus 12 ~~~~~~~~a~~AE~~Gfd~vw~~eh~~~~~~~~~la~~aa~T~rI~lgt 60 (325)
T PRK02271 12 PVKKIAYLAKLAEDNGFDYAWITDHYNNRDVYMTLAAIAAATDTIKLGP 60 (325)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccccCCCCHHHHHHHHHHhcCeEEEEe
Confidence 5788899999999999986644322112355555556667778888875
No 264
>PRK07094 biotin synthase; Provisional
Probab=20.73 E-value=1.7e+02 Score=23.88 Aligned_cols=39 Identities=18% Similarity=0.206 Sum_probs=29.6
Q ss_pred cccHHHHHHHHHHHHHCCCcE---EeecCCCCCCchhHHhhh
Q psy12654 48 IGSVTESIQAHLLAKQNGWGT---MVSHRSGETEDNFIADLV 86 (133)
Q Consensus 48 igTvTe~lea~~~a~~~g~~~---vvS~rsGETeD~~iadLA 86 (133)
-.|..+.+++++.+++.|+.+ ++-.-.|||.+++..++-
T Consensus 161 ~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~ 202 (323)
T PRK07094 161 GMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDIL 202 (323)
T ss_pred CCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHH
Confidence 468899999999999999853 233345899888877553
No 265
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=20.67 E-value=2.4e+02 Score=24.26 Aligned_cols=50 Identities=16% Similarity=0.186 Sum_probs=38.8
Q ss_pred CHHHHHHHHhhcccccceehccccccH-HHHHHHHHHHHHCCCcEEeecCCC
Q psy12654 25 NPKRIATAVEKKACNCLLLKVNQIGSV-TESIQAHLLAKQNGWGTMVSHRSG 75 (133)
Q Consensus 25 n~~ri~~~i~~~~~na~llK~nQigTv-Te~lea~~~a~~~g~~~vvS~rsG 75 (133)
+++.|..+++. .+.+++|--.=.|.+ .+.+++++.+.+.|..+|++.|.+
T Consensus 251 ~~~ll~~~~~~-g~~GlVl~g~G~Gn~p~~~~~al~~a~~~GipVV~~Sr~~ 301 (349)
T TIGR00520 251 PPLIVNAVLDA-GAKGIVLAGVGNGSLSAAGLKVNETAAKLGVPIVRSSRVP 301 (349)
T ss_pred CHHHHHHHHhC-CCCEEEEEeECCCCCCHHHHHHHHHHHHCCCEEEEEccCC
Confidence 46667666654 478999887666666 467789999999999999998873
No 266
>PRK11024 colicin uptake protein TolR; Provisional
Probab=20.67 E-value=2.5e+02 Score=20.56 Aligned_cols=40 Identities=15% Similarity=0.083 Sum_probs=29.9
Q ss_pred HHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcE
Q psy12654 29 IATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGT 68 (133)
Q Consensus 29 i~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~ 68 (133)
++.......-..++|+..+--+....+++...++++|+.-
T Consensus 94 l~~~~~~~~~~~V~i~aD~~~~~~~vv~vmd~~k~aG~~~ 133 (141)
T PRK11024 94 AKSRFKANPKTVFLIGGAKDVPYDEIIKALNLLHSAGVKS 133 (141)
T ss_pred HHHHHhhCCCceEEEEcCCCCCHHHHHHHHHHHHHcCCCe
Confidence 4444444455568999988888888888888899999853
No 267
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.63 E-value=1.1e+02 Score=26.62 Aligned_cols=47 Identities=9% Similarity=0.058 Sum_probs=32.5
Q ss_pred hccccccHHHHHHHHHHHHHC--CCcE---EeecCCCCCCchhHH--hhhhhhc
Q psy12654 44 KVNQIGSVTESIQAHLLAKQN--GWGT---MVSHRSGETEDNFIA--DLVVGLS 90 (133)
Q Consensus 44 K~nQigTvTe~lea~~~a~~~--g~~~---vvS~rsGETeD~~ia--dLAVgl~ 90 (133)
+.|.-.|..+.+++++.+++. ++.+ ++-.-.|||+++|-. +++--+.
T Consensus 257 ~M~R~~t~~~~~~~v~~lr~~~p~i~i~~d~IvGfPgETeedf~~Tl~fl~~l~ 310 (420)
T PRK14339 257 AMKRGYTKEWFLNRAEKLRALVPEVSISTDIIVGFPGESDKDFEDTMDVLEKVR 310 (420)
T ss_pred hccCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHHhcC
Confidence 446666889999999999997 4442 344448999999876 4443333
No 268
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=20.59 E-value=2.8e+02 Score=22.33 Aligned_cols=62 Identities=18% Similarity=0.243 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHCCCcEEeecCC-CCCCchhHHhhh---hhhccCceec---CCCCchhHHHHHHHHH
Q psy12654 51 VTESIQAHLLAKQNGWGTMVSHRS-GETEDNFIADLV---VGLSTGQIKT---GAPCRSERLAKYNQIL 112 (133)
Q Consensus 51 vTe~lea~~~a~~~g~~~vvS~rs-GETeD~~iadLA---Vgl~a~~iK~---G~p~r~Er~aKyN~LL 112 (133)
+-.+.++++.|++.|+.+.++.-. +.+..+++.+++ ..+|+..|-+ .+-..-+++..+=+.+
T Consensus 113 ~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l 181 (268)
T cd07940 113 LERAVEAVEYAKSHGLDVEFSAEDATRTDLDFLIEVVEAAIEAGATTINIPDTVGYLTPEEFGELIKKL 181 (268)
T ss_pred HHHHHHHHHHHHHcCCeEEEeeecCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHH
Confidence 445667999999999998887443 446677777664 5566666644 2223345554443333
No 269
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=20.51 E-value=3.3e+02 Score=22.31 Aligned_cols=70 Identities=19% Similarity=0.191 Sum_probs=43.8
Q ss_pred ccccceehccc---cccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHhhhhhhccCceecCCCCchhHHHHHHHHH
Q psy12654 37 ACNCLLLKVNQ---IGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIADLVVGLSTGQIKTGAPCRSERLAKYNQIL 112 (133)
Q Consensus 37 ~~na~llK~nQ---igTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iadLAVgl~a~~iK~G~p~r~Er~aKyN~LL 112 (133)
...+++||.|. .|.+.++++.++..-..+..+.||-++ .+. +.-|+..++.+|.+|.. ..|-+.+.-+++
T Consensus 150 L~d~ilikdnHi~~~g~~~~~v~~~r~~~~~~~~I~vev~t---~ee--a~~A~~~gaD~I~ld~~-~~e~l~~~v~~i 222 (269)
T cd01568 150 LSDAVLIKDNHIAAAGGITEAVKRARAAAPFEKKIEVEVET---LEE--AEEALEAGADIIMLDNM-SPEELKEAVKLL 222 (269)
T ss_pred CcceeeecHhHHHHhCCHHHHHHHHHHhCCCCCeEEEecCC---HHH--HHHHHHcCCCEEEECCC-CHHHHHHHHHHh
Confidence 45689999998 566666555555433335667777754 222 33455678999999876 446555544433
No 270
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.49 E-value=4e+02 Score=21.17 Aligned_cols=67 Identities=9% Similarity=-0.007 Sum_probs=45.8
Q ss_pred EecCcccccCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHHhhhhhhccCcee
Q psy12654 16 IVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIADLVVGLSTGQIK 95 (133)
Q Consensus 16 ivGDDl~vTn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGETeD~~iadLAVgl~a~~iK 95 (133)
+|| -=+|+|+++.+++++.++ .+++.|+-. - +.++.++++|+..+....+ . .-+.-|...|+.++|
T Consensus 69 ~vG-aGTV~~~~~~~~a~~aGA--~FivsP~~~---~---~v~~~~~~~~i~~iPG~~T---~--~E~~~A~~~Gad~vk 134 (213)
T PRK06552 69 LIG-AGTVLDAVTARLAILAGA--QFIVSPSFN---R---ETAKICNLYQIPYLPGCMT---V--TEIVTALEAGSEIVK 134 (213)
T ss_pred EEe-eeeCCCHHHHHHHHHcCC--CEEECCCCC---H---HHHHHHHHcCCCEECCcCC---H--HHHHHHHHcCCCEEE
Confidence 566 357999999999887654 577777633 2 4455577888887775542 2 223446678888888
Q ss_pred c
Q psy12654 96 T 96 (133)
Q Consensus 96 ~ 96 (133)
+
T Consensus 135 l 135 (213)
T PRK06552 135 L 135 (213)
T ss_pred E
Confidence 8
No 271
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=20.31 E-value=2.4e+02 Score=22.65 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=28.3
Q ss_pred cCHHHHHHHHhhcccccceehccccccHHHHHHHHHHHHHCCCcEEeecCCCC
Q psy12654 24 TNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGE 76 (133)
Q Consensus 24 Tn~~ri~~~i~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~~vvS~rsGE 76 (133)
+||+-++.|++.. +-+| |-+.-..+--+.++++++.|..+++.|..+.
T Consensus 84 ~~~~v~~aaL~~g---~~iI--Ndis~~~~~~~~~~l~~~~~~~vV~m~~~~~ 131 (258)
T cd00423 84 FNAEVAEAALKAG---ADII--NDVSGGRGDPEMAPLAAEYGAPVVLMHMDGT 131 (258)
T ss_pred CcHHHHHHHHHhC---CCEE--EeCCCCCCChHHHHHHHHcCCCEEEECcCCC
Confidence 5677777777654 2232 4332222112456677788888888886654
No 272
>cd07083 ALDH_P5CDH ALDH subfamily NAD+-dependent delta(1)-pyrroline-5-carboxylate dehydrogenase-like. ALDH subfamily of the NAD+-dependent, delta(1)-pyrroline-5-carboxylate dehydrogenases (P5CDH, EC=1.5.1.12). The proline catabolic enzymes, proline dehydrogenase and P5CDH catalyze the two-step oxidation of proline to glutamate. P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA). These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes. Monofunctional enzyme sequences such as those seen in the Bacillus RocA P5CDH are also present in this subfamily as well as the human ALDH4A1 P5CDH and the Drosophila Aldh17 P5CDH.
Probab=20.29 E-value=1.3e+02 Score=26.54 Aligned_cols=69 Identities=10% Similarity=0.056 Sum_probs=38.7
Q ss_pred hhcccccceehccccccHHHHHHHHHHHHHCCCc----EEeecCCCCCCchhHHhhhhhhccCceecCCCCchhHHH
Q psy12654 34 EKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWG----TMVSHRSGETEDNFIADLVVGLSTGQIKTGAPCRSERLA 106 (133)
Q Consensus 34 ~~~~~na~llK~nQigTvTe~lea~~~a~~~g~~----~vvS~rsGETeD~~iadLAVgl~a~~iK~G~p~r~Er~a 106 (133)
.-.+.|++++||+.....| +...+++..+.|+. -+|.....+..+..+.|-.|.. -.=+|++.-+..+.
T Consensus 178 ALaaGN~VVlKPs~~tp~~-~~~l~~~~~eaGlP~gvv~~v~g~~~~~~~~L~~~~~v~~---v~ftGs~~~g~~v~ 250 (500)
T cd07083 178 PVAVGNTVIAKPAEDAVVV-GYKVFEIFHEAGFPPGVVQFLPGVGEEVGAYLTEHERIRG---INFTGSLETGKKIY 250 (500)
T ss_pred HHHcCCeEEEeCCCcchHH-HHHHHHHHHHcCCCCCceEEEeCCCchhHHHHhcCCCcCE---EEEECcHHHHHHHH
Confidence 3458999999999886554 44567777787553 4554433333333333222211 22356665565554
No 273
>TIGR03558 oxido_grp_1 luciferase family oxidoreductase, group 1. The Pfam domain family pfam00296 is named for luciferase-like monooxygenases, but the family also contains several coenzyme F420-dependent enzymes. This protein family represents a well-resolved clade within family pfam00296 and shows no restriction to coenzyme F420-positive species, unlike some other clades within pfam00296.
Probab=20.24 E-value=2.5e+02 Score=23.06 Aligned_cols=49 Identities=14% Similarity=0.228 Sum_probs=32.4
Q ss_pred cHHHHHHHHHHHHHCCCcE-Eee-cCCCC---CCchhHHhhhhhhccCceecCC
Q psy12654 50 SVTESIQAHLLAKQNGWGT-MVS-HRSGE---TEDNFIADLVVGLSTGQIKTGA 98 (133)
Q Consensus 50 TvTe~lea~~~a~~~g~~~-vvS-~rsGE---TeD~~iadLAVgl~a~~iK~G~ 98 (133)
.+-+.++.+++|.+.|+.. .++ |...+ ..+.++.=-+++-.+..|++|.
T Consensus 18 ~~~~~~~~a~~AE~lGfd~~w~~Ehh~~~~~~~~~P~~~la~la~~T~rI~lgt 71 (323)
T TIGR03558 18 ALRNTVELAQHAERLGYHRFWVAEHHNMPGIASSAPEVLIGHIAAATSRIRVGS 71 (323)
T ss_pred HHHHHHHHHHHHHHcCCCEEEecccCCCCCccCCCHHHHHHHHHHhCCeEEEEe
Confidence 6778899999999999984 555 44332 2233333345566677888775
No 274
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=20.04 E-value=1.8e+02 Score=22.46 Aligned_cols=66 Identities=18% Similarity=0.137 Sum_probs=41.9
Q ss_pred HHHHHhhcccccceehcccc----c----cHHHHHHHHHHHHHCCCcEEeecCCCCCCchhHH---hhhhhhccCceecC
Q psy12654 29 IATAVEKKACNCLLLKVNQI----G----SVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIA---DLVVGLSTGQIKTG 97 (133)
Q Consensus 29 i~~~i~~~~~na~llK~nQi----g----TvTe~lea~~~a~~~g~~~vvS~rsGETeD~~ia---dLAVgl~a~~iK~G 97 (133)
++.+++. .++.+-+-+|.- | ...|.-+.++.++ |+.+.+-.-.++-.|+.|. .+++-+|+.+||+.
T Consensus 75 ve~A~~~-GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~--g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKTs 151 (203)
T cd00959 75 AREAIAD-GADEIDMVINIGALKSGDYEAVYEEIAAVVEACG--GAPLKVILETGLLTDEEIIKACEIAIEAGADFIKTS 151 (203)
T ss_pred HHHHHHc-CCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcC--CCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEcC
Confidence 5556655 366666545432 1 4455555555554 7777666666666555554 67889999999996
Done!