RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12654
(133 letters)
>gnl|CDD|109180 pfam00113, Enolase_C, Enolase, C-terminal TIM barrel domain.
Length = 296
Score = 256 bits (656), Expect = 1e-87
Identities = 99/120 (82%), Positives = 108/120 (90%)
Query: 14 IQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHR 73
IQIVGDDLTVTNPKRIA A+EKKACN LLLKVNQIGSVTES+ A +AK GWG MVSHR
Sbjct: 177 IQIVGDDLTVTNPKRIAKAIEKKACNSLLLKVNQIGSVTESLAAVKMAKDAGWGVMVSHR 236
Query: 74 SGETEDNFIADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGANAKFAGKNFRRPV 133
SGETED FIADLVVGL+ GQIKTGAPCRSERLAKYNQ+LRIEEELG+ AK+AG+NFR+P
Sbjct: 237 SGETEDTFIADLVVGLNAGQIKTGAPCRSERLAKYNQLLRIEEELGSKAKYAGRNFRKPQ 296
>gnl|CDD|215095 PLN00191, PLN00191, enolase.
Length = 457
Score = 253 bits (647), Expect = 3e-84
Identities = 93/124 (75%), Positives = 109/124 (87%)
Query: 10 APEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTM 69
+ E +QIVGDDL VTNPKR+A A+++KACN LLLKVNQIG+VTESI+A ++K GWG M
Sbjct: 333 SLEDVQIVGDDLLVTNPKRVAKAIQEKACNALLLKVNQIGTVTESIEAVKMSKAAGWGVM 392
Query: 70 VSHRSGETEDNFIADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGANAKFAGKNF 129
SHRSGETED+FIADL VGL+TGQIKTGAPCRSERLAKYNQ+LRIEEELG A +AG+NF
Sbjct: 393 TSHRSGETEDSFIADLAVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGDEAVYAGENF 452
Query: 130 RRPV 133
R+PV
Sbjct: 453 RKPV 456
>gnl|CDD|240259 PTZ00081, PTZ00081, enolase; Provisional.
Length = 439
Score = 244 bits (626), Expect = 2e-81
Identities = 93/117 (79%), Positives = 105/117 (89%)
Query: 12 EPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVS 71
+ +QIVGDDL VTNP RI A+EKKACN LLLKVNQIG+VTE+I+A LA++NGWG MVS
Sbjct: 323 QKVQIVGDDLLVTNPTRIKKAIEKKACNALLLKVNQIGTVTEAIEAAKLAQKNGWGVMVS 382
Query: 72 HRSGETEDNFIADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGANAKFAGKN 128
HRSGETED FIADLVVGL TGQIKTGAPCRSERLAKYNQ+LRIEEELG+NA +AG+N
Sbjct: 383 HRSGETEDTFIADLVVGLGTGQIKTGAPCRSERLAKYNQLLRIEEELGSNAVYAGEN 439
>gnl|CDD|239429 cd03313, enolase, Enolase: Enolases are homodimeric enzymes that
catalyse the reversible dehydration of
2-phospho-D-glycerate to phosphoenolpyruvate as part of
the glycolytic and gluconeogenesis pathways. The
reaction is facilitated by the presence of metal ions.
Length = 408
Score = 233 bits (598), Expect = 2e-77
Identities = 77/104 (74%), Positives = 89/104 (85%)
Query: 14 IQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHR 73
IQIVGDDL VTNP+R+ +EKKA N LL+KVNQIG++TE+I+A LAK+NG+G +VSHR
Sbjct: 305 IQIVGDDLFVTNPERLKKGIEKKAANALLIKVNQIGTLTETIEAIKLAKKNGYGVVVSHR 364
Query: 74 SGETEDNFIADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEE 117
SGETED FIADL V L GQIKTGAPCRSER AKYNQ+LRIEEE
Sbjct: 365 SGETEDTFIADLAVALGAGQIKTGAPCRSERTAKYNQLLRIEEE 408
>gnl|CDD|234617 PRK00077, eno, enolase; Provisional.
Length = 425
Score = 224 bits (573), Expect = 3e-73
Identities = 71/119 (59%), Positives = 91/119 (76%)
Query: 14 IQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHR 73
+Q+VGDDL VTN KR+ +EK A N +L+KVNQIG++TE++ A LAK+ G+ +VSHR
Sbjct: 305 VQLVGDDLFVTNTKRLKKGIEKGAANSILIKVNQIGTLTETLDAIELAKRAGYTAVVSHR 364
Query: 74 SGETEDNFIADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGANAKFAGKNFRRP 132
SGETED IADL V + GQIKTG+ RSER+AKYNQ+LRIEEELG A++AGK +
Sbjct: 365 SGETEDTTIADLAVATNAGQIKTGSLSRSERIAKYNQLLRIEEELGDAARYAGKKAFKN 423
>gnl|CDD|223226 COG0148, Eno, Enolase [Carbohydrate transport and metabolism].
Length = 423
Score = 202 bits (516), Expect = 8e-65
Identities = 70/127 (55%), Positives = 93/127 (73%)
Query: 5 QLNDFAPEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQN 64
+L + +QIVGDDL VTNPKR+ +EK A N +L+K NQIG++TE+++A LAK
Sbjct: 295 ELTKRLGDKVQIVGDDLFVTNPKRLKKGIEKGAANAILIKPNQIGTLTETLEAINLAKDA 354
Query: 65 GWGTMVSHRSGETEDNFIADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGANAKF 124
G+ ++SHRSGETED IADL V + GQIKTG+ RSER+AKYN++LRIEEELG A++
Sbjct: 355 GYTAVISHRSGETEDTTIADLAVATNAGQIKTGSLSRSERVAKYNELLRIEEELGDKARY 414
Query: 125 AGKNFRR 131
AG +
Sbjct: 415 AGIKEFK 421
>gnl|CDD|213580 TIGR01060, eno, phosphopyruvate hydratase. Alternate name: enolase
[Energy metabolism, Glycolysis/gluconeogenesis].
Length = 425
Score = 191 bits (487), Expect = 2e-60
Identities = 67/119 (56%), Positives = 88/119 (73%)
Query: 14 IQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHR 73
+QIVGDDL VTN + + +E N +L+K NQIG++TE++ A LAK+ G+ ++SHR
Sbjct: 306 VQIVGDDLFVTNTEILREGIEMGVANSILIKPNQIGTLTETLDAIELAKKAGYTAVISHR 365
Query: 74 SGETEDNFIADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGANAKFAGKNFRRP 132
SGETED IADL V + GQIKTG+ RSER+AKYNQ+LRIEEELG +A++AGKN
Sbjct: 366 SGETEDTTIADLAVATNAGQIKTGSLSRSERIAKYNQLLRIEEELGDSARYAGKNSFYR 424
>gnl|CDD|238188 cd00308, enolase_like, Enolase-superfamily, characterized by the
presence of an enolate anion intermediate which is
generated by abstraction of the alpha-proton of the
carboxylate substrate by an active site residue and is
stabilized by coordination to the essential Mg2+ ion.
Enolase superfamily contains different enzymes, like
enolases, glutarate-, fucanate- and galactonate
dehydratases, o-succinylbenzoate synthase, N-acylamino
acid racemase, L-alanine-DL-glutamate epimerase,
mandelate racemase, muconate lactonizing enzyme and
3-methylaspartase.
Length = 229
Score = 54.3 bits (131), Expect = 7e-10
Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 3/86 (3%)
Query: 13 PIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSH 72
I I D+ T A+E A + L +K ++G +TES +A LA+ G MV
Sbjct: 145 GIPIAADESVTTVDDA-LEALELGAVDILQIKPTRVGGLTESRRAADLAEAFGIRVMVHG 203
Query: 73 RSG-ETEDNFIADLVVGLS-TGQIKT 96
L L I+T
Sbjct: 204 TLESSIGTAAALHLAAALPNDRAIET 229
>gnl|CDD|222086 pfam13378, MR_MLE_C, Enolase C-terminal domain-like. This domain
appears at the C-terminus of many of the proteins that
carry the MR_MLE, pfam01188 and MR_MLE_N pfam02746
domains. EC:4.2.1.40.
Length = 111
Score = 33.3 bits (77), Expect = 0.009
Identities = 9/48 (18%), Positives = 21/48 (43%)
Query: 23 VTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMV 70
+ + +E A + + V ++G +TE+++ LA+ G
Sbjct: 4 LYSLADFRRLLEAGAVDIIQPDVTRVGGITEALKIAALAEAFGVPVAP 51
>gnl|CDD|239433 cd03317, NAAAR, N-acylamino acid racemase (NAAAR), an octameric
enzyme that catalyzes the racemization of N-acylamino
acids. NAAARs act on a broad range of N-acylamino acids
rather than amino acids. Enantiopure amino acids are of
industrial interest as chiral building blocks for
antibiotics, herbicides, and drugs. NAAAR is a member of
the enolase superfamily, characterized by the presence
of an enolate anion intermediate which is generated by
abstraction of the alpha-proton of the carboxylate
substrate by an active site residue and is stabilized by
coordination to the essential Mg2+ ion.
Length = 354
Score = 31.8 bits (73), Expect = 0.081
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 20 DLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNG---W-GTMV 70
D ++ + + A+E AC + +K ++G +TE+++ H L +++G W G M+
Sbjct: 234 DESIQSAEDARKAIELGACKIINIKPGRVGGLTEALKIHDLCQEHGIPVWCGGML 288
>gnl|CDD|213667 TIGR01928, menC_lowGC/arch, o-succinylbenzoate synthase. This
model describes the enzyme o-succinylbenzoic acid
synthetase (menC) that is involved in one of the steps
of the menaquinone biosynthesis pathway. It takes SHCHC
and makes it into 2-succinylbenzoate. Included in this
model are low GC gram positive bacteria and archaea.
Also included in the seed and in the model are enzymes
with the com-name of N-acylamino acid racemase (or the
more general term, racemase / racemase family), which
refers to the enzyme's industrial application as
racemases, and not to its biological function as
o-succinylbenzoic acid synthetase [Biosynthesis of
cofactors, prosthetic groups, and carriers, Menaquinone
and ubiquinone].
Length = 324
Score = 31.0 bits (70), Expect = 0.16
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 20 DLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNG---W-GTMV 70
D ++T+ +E + +K ++G +TE +A K++G W G M+
Sbjct: 229 DESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQKAIDTCKEHGAKVWIGGML 283
>gnl|CDD|227284 COG4948, COG4948, L-alanine-DL-glutamate epimerase and related
enzymes of enolase superfamily [Cell envelope
biogenesis, outer membrane / General function prediction
only].
Length = 372
Score = 29.7 bits (67), Expect = 0.44
Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 10 APEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGW--G 67
A I + +V +E A + + + ++G +TE+++ LA+ G G
Sbjct: 236 AATSTPIAAGE-SVYTRWDFRRLLEAGAVDIVQPDLARVGGITEALKIAALAEGFGVMVG 294
Query: 68 TMV 70
V
Sbjct: 295 PHV 297
>gnl|CDD|173970 cd08205, RuBisCO_IV_RLP, Ribulose bisphosphate carboxylase like
proteins, Rubisco-Form IV. Ribulose bisphosphate
carboxylase (Rubisco) plays an important role in the
Calvin reductive pentose phosphate pathway. It catalyzes
the primary CO2 fixation step. Rubisco is activated by
carbamylation of an active site lysine, stabilized by a
divalent cation, which then catalyzes the proton
abstraction from the substrate ribulose 1,5 bisphosphate
(RuBP) and leads to the formation of two molecules of
3-phosphoglycerate. Members of the Rubisco family can be
divided into 4 subgroups, Form I-IV, which differ in
their taxonomic distribution and subunit composition.
Form I-III have Rubisco activity, while Form IV, also
called Rubisco-like proteins (RLP), are missing critical
active site residues and therefore do not catalyze CO2
fixation. They are believed to utilize a related
enzymatic mechanism, but have divergent functions, like
for example 2,3-diketo-5-methylthiopentyl-1-phosphate
enolase or 5-methylthio-d-ribulose 1-phosphate
isomerase.
Length = 367
Score = 28.3 bits (64), Expect = 1.0
Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 10/67 (14%)
Query: 27 KRIATAVEKKACNCLLLKVNQIG-SVTESIQAH----LLAKQNGWGTMVSHRSGETEDNF 81
+R A + N LL+ N +G ++ ++A G + D
Sbjct: 213 RRRADRAVEAGANALLINPNLVGLDALRALAEDPDLPIMAHPAFAGALSRS-----PDYG 267
Query: 82 IADLVVG 88
L++G
Sbjct: 268 SHFLLLG 274
>gnl|CDD|148650 pfam07163, Pex26, Pex26 protein. This family consists of Pex26 and
related mammalian proteins. Pex26 is a type II
peroxisomal membrane protein which recruits Pex6-Pex1
complexes to peroxisomes. Mutations in Pex26 can lead to
human disorders.
Length = 309
Score = 28.4 bits (63), Expect = 1.1
Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 44 KVNQIGSVTESIQAHLLAKQNGWGTMVSH-RSGETEDNFIADLVVGLSTGQIKTGAPCRS 102
KV++ GS++ + + ++ + W + VSH RS +A L++ L + P
Sbjct: 222 KVSKEGSLSLKLLSLIMLLRRLWSSAVSHIRSIPFRKVLLAALILCLLIARFDPALPSSL 281
Query: 103 ERLAKYNQILR 113
L + +Q+ +
Sbjct: 282 PFLYRLHQLFQ 292
>gnl|CDD|213632 TIGR01502, B_methylAsp_ase, methylaspartate ammonia-lyase. This
model describes methylaspartate ammonia-lyase, also
called beta-methylaspartase (EC 4.3.1.2). It follows
methylaspartate mutase (composed of S and E subunits) in
one of several possible pathways of glutamate
fermentation [Energy metabolism, Amino acids and amines,
Energy metabolism, Fermentation].
Length = 408
Score = 27.9 bits (62), Expect = 1.7
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 33 VEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIADLVVGLSTG 92
+ KA + + +K +G V +A + K NG G V ET + VG++TG
Sbjct: 316 TDAKAGHMVQIKTPDVGGVNNIARAIMYCKANGMGAYVGGTCNETNRSAEVTTHVGMATG 375
>gnl|CDD|239430 cd03314, MAL, Methylaspartate ammonia lyase (3-methylaspartase,
MAL) is a homodimeric enzyme, catalyzing the
magnesium-dependent reversible alpha,beta-elimination of
ammonia from L-threo-(2S,3S)-3-methylaspartic acid to
mesaconic acid. This reaction is part of the main
catabolic pathway for glutamate. MAL belongs to the
enolase superfamily of enzymes, characterized by the
presence of an enolate anion intermediate which is
generated by abstraction of the alpha-proton of the
carboxylate substrate by an active site residue and is
stabilized by coordination to the essential Mg2+ ion.
Length = 369
Score = 27.7 bits (62), Expect = 1.7
Identities = 14/60 (23%), Positives = 28/60 (46%)
Query: 33 VEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIADLVVGLSTG 92
+ A + + +K +G + +I A L K++G G + ET+ + + V L+T
Sbjct: 280 ADAGAAHMVQIKTPDLGGIDNTIDAVLYCKEHGVGAYLGGSCNETDISARVTVHVALATR 339
>gnl|CDD|173972 cd08207, RLP_NonPhot, Ribulose bisphosphate carboxylase like
proteins from nonphototrophic bacteria. Ribulose
bisphosphate carboxylase (Rubisco) plays an important
role in the Calvin reductive pentose phosphate pathway.
It catalyzes the primary CO2 fixation step. Rubisco is
activated by carbamylation of an active site lysine,
stabilized by a divalent cation, which then catalyzes
the proton abstraction from the substrate ribulose 1,5
bisphosphate (RuBP) and leads to the formation of two
molecules of 3-phosphoglycerate. Members of the Rubisco
family can be divided into 4 subgroups, Form I-IV, which
differ in their taxonomic distribution and subunit
composition. Form I-III have Rubisco activity, while
Form IV, also called Rubisco-like proteins (RLP), are
missing critical active site residues and therefore do
not catalyze CO2 fixation. They are believed to utilize
a related enzymatic mechanism, but have divergent
functions. The specific function of this subgroup is
unknown.
Length = 406
Score = 27.3 bits (61), Expect = 2.7
Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 28 RIATAVEKKACNCLLLKVNQIG-SVTESIQAH----LLAKQNGWGTMVSH 72
R V + C+++ +N +G S +++ H + +NGWG +
Sbjct: 227 RNHDLVVEAGGTCVMVSLNSVGLSGLAALRRHSQLPIHGHRNGWGMLTRS 276
>gnl|CDD|239437 cd03321, mandelate_racemase, Mandelate racemase (MR) catalyzes the
Mg2+-dependent 1,1-proton transfer reaction that
interconverts the enantiomers of mandelic acid. MR is
the first enzyme in the bacterial pathway that converts
mandelic acid to benzoic acid and allows this pathway to
utilize either enantiomer of mandelate. MR belongs to
the enolase superfamily of enzymes, characterized by the
presence of an enolate anion intermediate which is
generated by abstraction of the alpha-proton of the
carboxylate substrate by an active site residue and is
stabilized by coordination to the essential Mg2+ ion.
Length = 355
Score = 27.1 bits (60), Expect = 3.0
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 13 PIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSH 72
P+Q+ G++ P+ + A+ AC+ ++ + +IG VT ++A LA+Q G M SH
Sbjct: 239 PVQM-GENWL--GPEEMFKALSAGACDLVMPDLMKIGGVTGWLRASALAEQAGI-PMSSH 294
>gnl|CDD|239431 cd03315, MLE_like, Muconate lactonizing enzyme (MLE) like subgroup
of the enolase superfamily. Enzymes of this subgroup
share three conserved carboxylate ligands for the
essential divalent metal ion (usually Mg2+), two
aspartates and a glutamate, and residues that can
function as general acid/base catalysts, a Lys-X-Lys
motif and another conserved lysine. Despite these
conserved residues, the members of the MLE subgroup,
like muconate lactonizing enzyme, o-succinylbenzoate
synthase (OSBS) and N-acylamino acid racemase (NAAAR),
catalyze different reactions.
Length = 265
Score = 26.5 bits (59), Expect = 4.3
Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 13 PIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVS 71
I+ D+ + P + A + + +K + G +T++ + +A+ G MV
Sbjct: 180 DTPIMADE-SAFTPHDAFRELALGAADAVNIKTAKTGGLTKAQRVLAVAEALGLPVMVG 237
>gnl|CDD|132469 TIGR03428, ureacarb_perm, permease, urea carboxylase system. A
number of bacteria obtain nitrogen by biotin- and
ATP-dependent urea degradation system distinct from
urease. The two characterized proteins of this system
are the enzymes urea carboxylase and allophanate
hydrolase, but other, uncharacterized proteins co-occur
as genes encoded nearby in multiple organisms. This
family includes predicted permeases of the amino acid
permease family, likely to transport either urea or a
compound from which urea is derived. It is found so far
only Actinobacteria, whereas a number of other species
with the urea carboxylase have an adjacent ABC
transporter operon.
Length = 475
Score = 26.3 bits (58), Expect = 5.9
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 12/51 (23%)
Query: 15 QIVGDDLTVTNPKRIATAVEKKAC--------NCLLLK----VNQIGSVTE 53
QI+G+D T+T+P A AV + NC+ ++ VN IG E
Sbjct: 127 QIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIGVEWMSRVNTIGVTCE 177
>gnl|CDD|215643 PLN03241, PLN03241, magnesium chelatase subunit H; Provisional.
Length = 1315
Score = 26.4 bits (58), Expect = 6.3
Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 4/21 (19%)
Query: 52 TESIQAHLLAKQNGWGTMVSH 72
+ESI +AK+ G+GT+VSH
Sbjct: 714 SESI----VAKRRGYGTIVSH 730
>gnl|CDD|116097 pfam07476, MAAL_C, Methylaspartate ammonia-lyase C-terminus.
Methylaspartate ammonia-lyase EC:4.3.1.2 catalyzes the
second step of fermentation of glutamate. It is a
homodimer. This family represents the C-terminal region
of Methylaspartate ammonia-lyase and contains a TIM
barrel fold similar to the pfam01188. This family
represents the catalytic domain and contains a metal
binding site.
Length = 249
Score = 25.7 bits (57), Expect = 7.5
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 13 PIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSH 72
++IV D+ T + I V+ A + + +K +G + +I+A L K+ G G +
Sbjct: 139 GVEIVADEWCNT-LEDIREFVDAGAADMVQIKTPDLGGINNTIEAVLYCKEKGVGAYLGG 197
Query: 73 RSGETEDNFIADLVVGLSTG 92
ET+ + + V L+T
Sbjct: 198 TCNETDRSARVSVHVALATR 217
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.389
Gapped
Lambda K H
0.267 0.0792 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,593,155
Number of extensions: 557797
Number of successful extensions: 412
Number of sequences better than 10.0: 1
Number of HSP's gapped: 412
Number of HSP's successfully gapped: 26
Length of query: 133
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 47
Effective length of database: 7,123,158
Effective search space: 334788426
Effective search space used: 334788426
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.1 bits)