RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12654
(133 letters)
>2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A
{Saccharomyces cerevisiae} SCOP: c.1.11.1 d.54.1.1 PDB:
1ebg_A 1ebh_A* 1one_A* 2one_A* 1p48_A* 1p43_A* 1l8p_A
4enl_A 1nel_A 1els_A 3enl_A 5enl_A* 6enl_A 7enl_A*
2al2_A* 2al2_B* 2xh7_A* 2xgz_A* 2xh2_A* 2xh4_A* ...
Length = 436
Score = 275 bits (706), Expect = 2e-93
Identities = 91/120 (75%), Positives = 100/120 (83%)
Query: 14 IQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHR 73
IQIV DDLTVTNPKRIATA+EKKA + LLLKVNQIG+++ESI+A + GWG MVSHR
Sbjct: 315 IQIVADDLTVTNPKRIATAIEKKAADALLLKVNQIGTLSESIKAAQDSFAAGWGVMVSHR 374
Query: 74 SGETEDNFIADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGANAKFAGKNFRRPV 133
SGETED FIADLVVGL TGQIKTGAP RSERLAK NQ+LRIEEELG NA FAG+NF
Sbjct: 375 SGETEDTFIADLVVGLRTGQIKTGAPARSERLAKLNQLLRIEEELGDNAVFAGENFHHGD 434
>2akz_A Gamma enolase, neural; fluoride inhibition, negative cooperativity,
glycolysis, , isothermal titration calorimetry, lyase;
1.36A {Homo sapiens} SCOP: c.1.11.1 d.54.1.1 PDB: 2akm_A
1te6_A 2psn_A 3b97_A 2xsx_A 1pdz_A 1pdy_A
Length = 439
Score = 274 bits (704), Expect = 3e-93
Identities = 101/119 (84%), Positives = 108/119 (90%)
Query: 14 IQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHR 73
IQIVGDDLTVTNPKRI AVE+KACNCLLLKVNQIGSVTE+IQA LA++NGWG MVSHR
Sbjct: 312 IQIVGDDLTVTNPKRIERAVEEKACNCLLLKVNQIGSVTEAIQACKLAQENGWGVMVSHR 371
Query: 74 SGETEDNFIADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGANAKFAGKNFRRP 132
SGETED FIADLVVGL TGQIKTGAPCRSERLAKYNQ++RIEEELG A+FAG NFR P
Sbjct: 372 SGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQLMRIEEELGDEARFAGHNFRNP 430
>3otr_A Enolase; structural genomics, center for structural genomics of
infec diseases, csgid, alpha-beta barrel, TIM barrel;
2.75A {Toxoplasma gondii}
Length = 452
Score = 269 bits (689), Expect = 9e-91
Identities = 83/119 (69%), Positives = 102/119 (85%)
Query: 14 IQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHR 73
Q++GDD+ VTN RI A++ KACNCLLLKVNQIGSVTE+I+A LLA+++GWG VSHR
Sbjct: 325 TQVIGDDILVTNILRIEKALKDKACNCLLLKVNQIGSVTEAIEACLLAQKSGWGVQVSHR 384
Query: 74 SGETEDNFIADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGANAKFAGKNFRRP 132
SGETED+FIADLVVGL GQIK+G+PCRSERL KYNQ++RIEE LGA+ +AG++FR P
Sbjct: 385 SGETEDSFIADLVVGLRCGQIKSGSPCRSERLCKYNQLMRIEESLGADCVYAGESFRHP 443
>3qtp_A Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Entamoeba
histolytica}
Length = 441
Score = 266 bits (682), Expect = 7e-90
Identities = 79/119 (66%), Positives = 96/119 (80%), Gaps = 1/119 (0%)
Query: 14 IQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHR 73
QIVGDDL VTNP R+ A++K ACN +L+KVNQIG++TE+ + +A++ GWG M SHR
Sbjct: 322 FQIVGDDLLVTNPARVQMAMDKNACNSVLIKVNQIGTLTETFKTIKMAQEKGWGVMASHR 381
Query: 74 SGETEDNFIADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGANAKFAGKNFRRP 132
SGETED FIADLVVGL+ QIKTGAPCRSERL KYNQ++RIEEELG N +AGKN+R
Sbjct: 382 SGETEDTFIADLVVGLNCKQIKTGAPCRSERLCKYNQLMRIEEELG-NIPYAGKNWRNS 439
>2ptz_A Enolase; lyase, glycolysis,His-TAG; 1.65A {Trypanosoma brucei}
SCOP: c.1.11.1 d.54.1.1 PDB: 2ptx_A 2pty_A* 2ptw_A
2pu0_A 2pu1_A* 1oep_A
Length = 432
Score = 263 bits (675), Expect = 8e-89
Identities = 80/116 (68%), Positives = 94/116 (81%)
Query: 14 IQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHR 73
QIVGDDLTVTN +RI A+EKKACN LLLK+NQIG+++E+I + L +NGW MVSHR
Sbjct: 316 TQIVGDDLTVTNTERIKMAIEKKACNSLLLKINQIGTISEAIASSKLCMENGWSVMVSHR 375
Query: 74 SGETEDNFIADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGANAKFAGKNF 129
SGETED +IADLVV L +GQIKTGAPCR ER AK NQ+LRIEEELGA+AKF +
Sbjct: 376 SGETEDTYIADLVVALGSGQIKTGAPCRGERTAKLNQLLRIEEELGAHAKFGFPGW 431
>2pa6_A Enolase; glycolysis, lyase, magnesium, metal-binding, structural
GENO NPPSFA; 1.85A {Methanocaldococcus jannaschii}
Length = 427
Score = 253 bits (648), Expect = 7e-85
Identities = 77/119 (64%), Positives = 96/119 (80%), Gaps = 1/119 (0%)
Query: 14 IQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHR 73
IQIVGDDL VTN +R+ +E KA N LLLKVNQIG+++E++ A LA +NG+G +VSHR
Sbjct: 309 IQIVGDDLFVTNVERLRKGIEMKAANALLLKVNQIGTLSEAVDAAQLAFRNGYGVVVSHR 368
Query: 74 SGETEDNFIADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGANAKFAGKNFRRP 132
SGETED IADL V L++GQIKTGAP R ER AKYNQ++RIE+ELG +K+AG+NFR P
Sbjct: 369 SGETEDTTIADLSVALNSGQIKTGAPARGERTAKYNQLIRIEQELGL-SKYAGRNFRCP 426
>3uj2_A Enolase 1; enzyme function initiative, EFI, lyase; 2.00A
{Anaerostipes caccae}
Length = 449
Score = 213 bits (545), Expect = 3e-69
Identities = 67/115 (58%), Positives = 91/115 (79%)
Query: 14 IQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHR 73
IQ+VGDDL VTN +R+ ++++ N +L+K+NQIG+V+E+++A +A + G+ +VSHR
Sbjct: 333 IQLVGDDLFVTNTERLNKGIKERCGNSILIKLNQIGTVSETLEAIKMAHKAGYTAVVSHR 392
Query: 74 SGETEDNFIADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGANAKFAGKN 128
SGETED IADL V L+TGQIKTGAP RSER+AKYNQ+LRIEEELG +A + G
Sbjct: 393 SGETEDTTIADLAVALNTGQIKTGAPSRSERVAKYNQLLRIEEELGDSAVYPGFT 447
>1w6t_A Enolase; bacterial infection, surface protein, moonlighting
protein, glycolysis, phosphopyruvate hydratase, lyase;
HET: 2PE; 2.10A {Streptococcus pneumoniae} SCOP:
c.1.11.1 d.54.1.1 PDB: 1iyx_A
Length = 444
Score = 213 bits (544), Expect = 4e-69
Identities = 60/122 (49%), Positives = 90/122 (73%), Gaps = 4/122 (3%)
Query: 14 IQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHR 73
+Q+VGDD VTN +A +++ A N +L+KVNQIG++TE+ +A +AK+ G+ +VSHR
Sbjct: 323 VQLVGDDFFVTNTDYLARGIQEGAANSILIKVNQIGTLTETFEAIEMAKEAGYTAVVSHR 382
Query: 74 SGETEDNFIADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGANAKFAG----KNF 129
SGETED+ IAD+ V + GQIKTG+ R++R+AKYNQ+LRIE++LG A++ G N
Sbjct: 383 SGETEDSTIADIAVATNAGQIKTGSLSRTDRIAKYNQLLRIEDQLGEVAEYRGLKSFYNL 442
Query: 130 RR 131
++
Sbjct: 443 KK 444
>3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii}
Length = 428
Score = 212 bits (543), Expect = 4e-69
Identities = 60/115 (52%), Positives = 83/115 (72%)
Query: 14 IQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHR 73
+Q+VGDD+ VTNP + ++K N +L+K+NQIG++TE++ LAK N +G ++SHR
Sbjct: 307 VQLVGDDIFVTNPDILEKGIKKNIANAILVKLNQIGTLTETLATVGLAKSNKYGVIISHR 366
Query: 74 SGETEDNFIADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGANAKFAGKN 128
SGETED IADL V QIKTG+ CRS+R+AKYN++L+IE EL A +AGK
Sbjct: 367 SGETEDTTIADLAVATDARQIKTGSLCRSDRVAKYNRLLQIERELNDQAPYAGKE 421
>2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli}
SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A 3h8a_A
Length = 431
Score = 212 bits (543), Expect = 5e-69
Identities = 64/119 (53%), Positives = 85/119 (71%), Gaps = 1/119 (0%)
Query: 14 IQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHR 73
IQ+VGDDL VTN K + +EK N +L+K NQIGS+TE++ A +AK G+ ++SHR
Sbjct: 311 IQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHR 370
Query: 74 SGETEDNFIADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGANAKFAGKN-FRR 131
SGETED IADL VG + GQIKTG+ RS+R+AKYNQ++RIEE LG A + G+ +
Sbjct: 371 SGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKG 429
>3qn3_A Enolase; structural genomics, center for structural genomics of
infec diseases, csgid, glycolysis, lyase; 2.13A
{Campylobacter jejuni}
Length = 417
Score = 203 bits (520), Expect = 1e-65
Identities = 57/116 (49%), Positives = 80/116 (68%), Gaps = 3/116 (2%)
Query: 14 IQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHR 73
IQ+VGDDL VTN + + KK N +L+K NQIG++T++++ LA++N + ++SHR
Sbjct: 305 IQLVGDDLFVTNEDILREGIIKKMANAVLIKPNQIGTITQTMRTVRLAQRNNYKCVMSHR 364
Query: 74 SGETEDNFIADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGANAKFAGKNF 129
SGE+ED FIAD V L+TGQIKTGA R ER AKYN++L IE E ++ G+
Sbjct: 365 SGESEDAFIADFAVALNTGQIKTGALARGERTAKYNRLLEIEFESD---EYLGEKL 417
>1kcz_A Beta-methylaspartase; beta zigzag, alpha/beta-barrel, lyase; 1.90A
{Clostridium tetanomorphum} SCOP: c.1.11.2 d.54.1.1 PDB:
1kd0_A* 3zvi_A 3zvh_A
Length = 413
Score = 60.4 bits (146), Expect = 5e-12
Identities = 22/117 (18%), Positives = 42/117 (35%), Gaps = 5/117 (4%)
Query: 8 DFAPEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWG 67
D ++V D+ + + + KA + + +K +G V A + K NG G
Sbjct: 296 DGRGVDAELVADE-WCNTVEDVKFFTDNKAGHMVQIKTPDLGGVNNIADAIMYCKANGMG 354
Query: 68 TMVSHRSGETEDNFIADLVVGLSTGQ----IKTGAPCRSERLAKYNQILRIEEELGA 120
ET + +G++ G K G + N++ R+ +G
Sbjct: 355 AYCGGTCNETNRSAEVTTNIGMACGARQVLAKPGMGVDEGMMIVKNEMNRVLALVGR 411
>1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel;
1.33A {Citrobacter amalonaticus} SCOP: c.1.11.2 d.54.1.1
PDB: 1kkr_A*
Length = 413
Score = 59.7 bits (144), Expect = 1e-11
Identities = 20/113 (17%), Positives = 42/113 (37%), Gaps = 5/113 (4%)
Query: 13 PIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSH 72
++IV D+ + I + +C+ + +K +G + + A L ++G
Sbjct: 301 GVKIVADE-WCNTYQDIVDFTDAGSCHMVQIKTPDLGGIHNIVDAVLYCNKHGMEAYQGG 359
Query: 73 RSGETEDNFIADLVVGLSTG--QI--KTGAPCRSERLAKYNQILRIEEELGAN 121
ETE + + V L+ ++ K G +N++ R L
Sbjct: 360 TCNETEISARTCVHVALAARPMRMLIKPGMGFDEGLNIVFNEMNRTIALLQTK 412
>2okt_A OSB synthetase, O-succinylbenzoic acid synthetase; enolase,
structural genom protein structure initiative, PSI,
nysgrc; 1.30A {Staphylococcus aureus subsp} PDB: 2ola_A
3h70_A
Length = 342
Score = 42.0 bits (99), Expect = 2e-05
Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 2 LLFQLNDFAPEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLA 61
+L ++ D PI + D T+ I +E ++LK ++G + + A
Sbjct: 205 MLDEVADGTIPPIAL---DEKATSLLDIINLIELYNVKVVVLKPFRLGGIDKVQTAIDTL 261
Query: 62 KQNGWGTMVS 71
K +G ++
Sbjct: 262 KSHGAKVVIG 271
>3qld_A Mandelate racemase/muconate lactonizing protein; structural
genomics, PSI-2, isomerase; HET: MSE; 1.85A
{Alicyclobacillus acidocaldarius LAA1}
Length = 388
Score = 36.2 bits (84), Expect = 0.002
Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 13 PIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSH 72
+ D+ +V + + + A L +K ++G +++A +A + G V
Sbjct: 240 RTPVCLDE-SVRSVRELKLTARLGAARVLNVKPGRLGGFGATLRALDVAGEAGMAAWVGG 298
>3mwc_A Mandelate racemase/muconate lactonizing protein; enolase,
structural genomics, protein structure initiative,
nysgrc; 1.80A {Kosmotoga olearia}
Length = 400
Score = 34.7 bits (80), Expect = 0.005
Identities = 10/58 (17%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 13 PIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMV 70
I D+ ++ + + + N +K+ ++G + E+I+ + +A NG
Sbjct: 255 ETPICLDE-SLISSRVAEFVAKLGISNIWNIKIQRVGGLLEAIKIYKIATDNGIKLWG 311
>1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A
{Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A*
1sjb_A* 1sjc_A*
Length = 368
Score = 34.2 bits (79), Expect = 0.008
Identities = 10/58 (17%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 13 PIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMV 70
I D+ ++ + + A A++ A + +K ++G E+ + H + +G
Sbjct: 233 QTPICLDE-SIVSARAAADAIKLGAVQIVNIKPGRVGGYLEARRVHDVCAAHGIPVWC 289
>1wuf_A Hypothetical protein LIN2664; structural genomics, unknown
function, nysgxrc target T2186, superfamily, protein
structure initiative, PSI; 2.90A {Listeria innocua}
SCOP: c.1.11.2 d.54.1.1
Length = 393
Score = 33.8 bits (78), Expect = 0.008
Identities = 13/93 (13%), Positives = 32/93 (34%), Gaps = 2/93 (2%)
Query: 13 PIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSH 72
+I D+ + + K + A +C + LK+ ++G ++ +++ N
Sbjct: 252 KTRICLDE-NIRSVKDVEQAHSIGSCRAINLKLARVGGMSSALKIAEYCALNEILVWC-G 309
Query: 73 RSGETEDNFIADLVVGLSTGQIKTGAPCRSERL 105
E ++ + + G S R
Sbjct: 310 GMLEAGVGRAHNIALAARNEFVFPGDISASNRF 342
>1wue_A Mandelate racemase/muconate lactonizing enzyme FA protein;
structural genomics, unknown function, nysgxrc target
T2185; 2.10A {Enterococcus faecalis} SCOP: c.1.11.2
d.54.1.1
Length = 386
Score = 34.2 bits (79), Expect = 0.008
Identities = 10/60 (16%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 13 PIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSH 72
+I D+ + + K A+ +C + LK+ ++G + E+++ ++N +
Sbjct: 252 KTRICLDE-NIRSLKDCQVALALGSCRSINLKIPRVGGIHEALKIAAFCQENDLLVWLGG 310
>3r0u_A Enzyme of enolase superfamily; structural genomics, putative
epimerase, PSI-biolog YORK structural genomics research
consortium; HET: MSE TAR; 1.90A {Francisella
philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A
3r1z_A*
Length = 379
Score = 33.8 bits (78), Expect = 0.009
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 13 PIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMV 70
I +V D+ +V + K ++++ACN + +K+ + G + E+ + LA G MV
Sbjct: 239 NIPVVADE-SVFDAKDAERVIDEQACNMINIKLAKTGGILEAQKIKKLADSAGISCMV 295
>1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A
{Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1
Length = 370
Score = 33.4 bits (77), Expect = 0.014
Identities = 8/58 (13%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 13 PIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMV 70
+ I+ D+ ++++ A + LK+ +G + +++ +A+ G +
Sbjct: 239 GVAILADE-SLSSLSSAFELARDHAVDAFSLKLCNMGGIANTLKVAAVAEAAGISSYG 295
>2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel,
metal-binding, metal binding; 1.95A {Thermus
thermophilus}
Length = 369
Score = 32.6 bits (75), Expect = 0.021
Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 2/93 (2%)
Query: 13 PIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSH 72
I D+ ++T ++ A+E A +K ++G ES++ H LA+ G +
Sbjct: 232 STPICLDE-SLTGAEKARKAIELGAGRVFNVKPARLGGHGESLRVHALAESAGIPLWM-G 289
Query: 73 RSGETEDNFIADLVVGLSTGQIKTGAPCRSERL 105
E +L + G K G + R
Sbjct: 290 GMLEAGVGRAHNLHLATLPGFTKPGDVSSASRY 322
>1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super
family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2
d.54.1.1 PDB: 1jpm_A
Length = 366
Score = 32.3 bits (74), Expect = 0.029
Identities = 10/58 (17%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 13 PIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMV 70
I+ D+ +V P++ ++ ++ + + +K+ + G ++ + + + +A+ G MV
Sbjct: 238 DTPIMADE-SVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEKINAMAEACGVECMV 294
>1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus
radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A
2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A
Length = 375
Score = 32.3 bits (74), Expect = 0.030
Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 2/93 (2%)
Query: 13 PIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSH 72
+ D+ +V + A+ A + LKV ++G ES + H +A+ G
Sbjct: 239 RTPLCLDE-SVASASDARKALALGAGGVINLKVARVGGHAESRRVHDVAQSFGAPVWC-G 296
Query: 73 RSGETEDNFIADLVVGLSTGQIKTGAPCRSERL 105
E+ ++ + + G + R
Sbjct: 297 GMLESGIGRAHNIHLSTLSNFRLPGDTSSASRY 329
>3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A
{Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A*
3k1g_A* 3kum_A*
Length = 354
Score = 31.1 bits (71), Expect = 0.073
Identities = 9/58 (15%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 13 PIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMV 70
I+ D+ + + + V+K + + +K+ + G + E+++ + + + G M+
Sbjct: 234 NTTIMADE-SCFDAQDALELVKKGTVDVINIKLMKCGGIHEALKINQICETAGIECMI 290
>3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible
chloromuconate cycloisomerase...; (beta/alpha)8-barrel;
3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A
Length = 368
Score = 30.7 bits (70), Expect = 0.10
Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 13 PIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMV 70
I I+ D+ + N ++ +AC+ LK+++ +T ++ LA+Q V
Sbjct: 235 RIPIMADE-SCCNSFDAERLIQIQACDSFNLKLSKSAGITNALNIIRLAEQAHMPVQV 291
>3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer
9468A, muconate lactonizing enzyme, PSI-2, protein
structure initiative; 1.70A {Ruegeria pomeroyi} PDB:
3i6t_A
Length = 385
Score = 30.7 bits (70), Expect = 0.11
Identities = 10/60 (16%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 13 PIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSH 72
+ ++ D+ +V P+ + A + C+ + +K+ + G +T + +A +G
Sbjct: 243 DVPLLADE-SVYGPEDMVRAAHEGICDGVSIKIMKSGGLTRAQTVARIAAAHGLMAYGGD 301
>2pmq_A Mandelate racemase/muconate lactonizing enzyme; structural
genomics, isomerase, PSI-2; HET: MSE; 1.72A {Roseovarius
SP}
Length = 377
Score = 30.3 bits (69), Expect = 0.16
Identities = 7/48 (14%), Positives = 14/48 (29%)
Query: 23 VTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMV 70
T+ + TA + +KV++IG +
Sbjct: 246 GTSLNTVITAAATSLVDGFGMKVSRIGGLQHMRAFRDFCAARNLPHTC 293
>3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone
binding, isomeras structural genomics, PSI-2; HET: MUC;
1.70A {Pseudomonas fluorescens} PDB: 3ct2_A* 3fj4_A*
1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A
Length = 382
Score = 29.9 bits (68), Expect = 0.21
Identities = 10/58 (17%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 13 PIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMV 70
P I+ D+ ++ + + A + LK+ + G +++ +A+ G G
Sbjct: 245 PAPIMADE-SIECVEDAFNLAREGAASVFALKIAKNGGPRATLRTAAIAEAAGIGLYG 301
>4e8g_A Enolase, mandelate racemase/muconate lactonizing enzyme, N domain
protein; putative racemase, nysgrc, structural genomics,
PSI-biology; 2.00A {Paracoccus denitrificans}
Length = 391
Score = 29.6 bits (67), Expect = 0.28
Identities = 5/50 (10%), Positives = 16/50 (32%)
Query: 23 VTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSH 72
+ + A + C+ +K+ +IG + + + +
Sbjct: 267 GEDLSTVIRAAGQGLCDGFGMKLTRIGGLQQMAAFRDICEARALPHSCDD 316
>3fcp_A L-Ala-D/L-Glu epimerase, A muconate lactonizing enzyme; structural
genomics, nysgrc,target 9450E, PSI-2; 1.80A {Klebsiella
pneumoniae subsp}
Length = 381
Score = 29.6 bits (67), Expect = 0.30
Identities = 9/58 (15%), Positives = 18/58 (31%), Gaps = 1/58 (1%)
Query: 13 PIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMV 70
I+ D+ V ++ LK+ + G + +A+ G G
Sbjct: 244 ETAILADE-AVATAYDGYQLAQQGFTGAYALKIAKAGGPNSVLALARVAQAAGIGLYG 300
>1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} SCOP:
c.1.11.2 d.54.1.1 PDB: 2chr_A
Length = 370
Score = 29.2 bits (66), Expect = 0.34
Identities = 8/58 (13%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 13 PIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMV 70
+ I+ D+ +++ ++ + LK+ +G V+ + + +A+ +G +
Sbjct: 239 RVAIMADE-SLSTLASAFDLARDRSVDVFSLKLCNMGGVSATQKIAAVAEASGIASYG 295
>3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target
9450D, isomerase, PSI-2, protein structure initiative;
2.20A {Corynebacterium glutamicum}
Length = 383
Score = 29.1 bits (66), Expect = 0.34
Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 13 PIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMV 70
+ ++ D+ +V P V+ +A + + LK + G + ES + +A+ G
Sbjct: 245 NVSVMADE-SVWTPAEALAVVKAQAADVIALKTTKHGGLLESKKIAAIAEAGGLACHG 301
>3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein
structure INI NEW YORK SGX research center for
structural genomics, nysgx; 2.20A {Azorhizobium
caulinodans}
Length = 377
Score = 29.2 bits (66), Expect = 0.35
Identities = 6/50 (12%), Positives = 19/50 (38%)
Query: 23 VTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSH 72
+ + V ++A + + +K+ + G + ++ +A G
Sbjct: 251 CFDAVDLMEVVRRQAADAISVKIMKCGGLMKAQSLMAIADTAGLPGYGGT 300
>3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural
genomics, unknown function, PSI-2, protein structure
initiative; 2.80A {Silicibacter pomeroyi}
Length = 378
Score = 28.8 bits (65), Expect = 0.45
Identities = 11/83 (13%), Positives = 28/83 (33%), Gaps = 1/83 (1%)
Query: 23 VTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHRSGETEDNFI 82
+ + A +K+N++G +T + + +A +G V +G +
Sbjct: 246 LVTLQDAARVARDGLAEVFGIKLNRVGGLTRAARMRDIALTHGIDMFV-MATGGSVLADA 304
Query: 83 ADLVVGLSTGQIKTGAPCRSERL 105
L + + A + +
Sbjct: 305 EALHLAATIPDHACHAVWACQDM 327
>2pge_A MENC; OSBS, NYSGXRC, PSI-II, structural genomics, protein structure
initiative; 1.60A {Desulfotalea psychrophila LSV54}
Length = 377
Score = 28.9 bits (65), Expect = 0.52
Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 13 PIQIVGDDLTVTNPKRIATAVEKKACNC--LLLKVNQIGSVTESIQAHLLAKQNGWGTMV 70
P+ I D+ + + A ++LK + +G + Q LA++ G G +
Sbjct: 259 PLAIALDE-ELIGLGAEQRSAMLDAIRPQYIILKPSLLGGFHYAGQWIELARERGIGFWI 317
Query: 71 SH 72
+
Sbjct: 318 TS 319
>2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein;
enolase superfamily, prediction of function; HET: NSK;
1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A*
Length = 369
Score = 28.4 bits (64), Expect = 0.67
Identities = 7/58 (12%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 13 PIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMV 70
+ ++ D+ + + + + ++ +A + + +K+ + G + +++ A+ G V
Sbjct: 237 DLPLMIDE-GLKSSREMRQIIKLEAADKVNIKLMKCGGIYPAVKLAHQAEMAGIECQV 293
>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase,
structural genomics, PSI, protein structu initiative,
nysgrc; 2.00A {Roseovarius nubinhibens}
Length = 379
Score = 28.0 bits (63), Expect = 1.0
Identities = 7/50 (14%), Positives = 17/50 (34%)
Query: 23 VTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSH 72
VT V + LK++ +G ++++ + N +
Sbjct: 246 VTGLHMAQRIVADRGAEICCLKISNLGGLSKARRTRDFLIDNRMPVVAED 295
>1r6w_A OSB synthase, O-succinylbenzoate synthase, OSBS; enolase
superfamily, TIM barrel, capping alpha+beta domain,
lyase; HET: 164; 1.62A {Escherichia coli} SCOP: c.1.11.2
d.54.1.1 PDB: 1fhv_A* 1fhu_A 2ofj_A 3gc2_A*
Length = 322
Score = 27.4 bits (61), Expect = 1.5
Identities = 6/35 (17%), Positives = 14/35 (40%)
Query: 37 ACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVS 71
+++K GS+ + + A G ++S
Sbjct: 230 GVRAVVIKPTLTGSLEKVREQVQAAHALGLTAVIS 264
>2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural
genomics, NYSGXRC, target 9440A, enolase superfamily,
PSI-2; 1.80A {Aspergillus oryzae RIB40}
Length = 371
Score = 27.2 bits (61), Expect = 1.7
Identities = 10/50 (20%), Positives = 19/50 (38%)
Query: 23 VTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSH 72
TN I + A + LK+++ G +T + + G+ V
Sbjct: 248 ATNEMSIVKILADDAAEGIDLKISKAGGLTRGRRQRDICLAAGYSVSVQE 297
>3u9i_A Mandelate racemase/muconate lactonizing enzyme, C domain protein;
structural genomics, PSI-biology; 2.90A {Roseiflexus SP}
Length = 393
Score = 27.3 bits (61), Expect = 1.7
Identities = 11/58 (18%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 13 PIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMV 70
+ + D+ +V + A A + L +K+ + G + E++ +A+ G M+
Sbjct: 270 RVPVAADE-SVASATDAARLARNAAVDVLNIKLMKCG-IVEALDIAAIARTAGLHLMI 325
>2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II,
NYSGXRC, enolase, structural genomics, protei structure
initiative, PSI-2; 1.93A {Azoarcus SP}
Length = 397
Score = 26.6 bits (59), Expect = 3.0
Identities = 9/58 (15%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 13 PIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMV 70
I D+ + + + K A + L++K + G + ++ + LA+ +
Sbjct: 240 ATPIYADE-SAQELHDLLAIINKGAADGLMIKTQKAGGLLKAQRWLTLARLANLPVIC 296
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.6 bits (58), Expect = 3.3
Identities = 13/94 (13%), Positives = 29/94 (30%), Gaps = 27/94 (28%)
Query: 1 PLL-----FQLNDFAPEPIQIVGDDL------TVT--NPKRIATAVEKKACNCLL-LKVN 46
LL D + D+ T + + ++ ++ ++ +C++ L V
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK 489
Query: 47 ----QIGSVTESIQAHLLA----KQNGWGTMVSH 72
T H+L +G G +
Sbjct: 490 WETTTQFKAT-----HILDFGPGGASGLGVLTHR 518
>2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006,
struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga
maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A
Length = 345
Score = 26.1 bits (58), Expect = 4.7
Identities = 8/58 (13%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 13 PIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMV 70
P + D+ + + V+++A + + +K+ + +++++ +A+ +G M+
Sbjct: 235 PFPVAADE-SARTKFDVMRLVKEEAVDYVNIKLMK-SGISDALAIVEIAESSGLKLMI 290
>3s5s_A Mandelate racemase/muconate lactonizing enzyme FA protein;
PSI-biology, structural genomics, NEW YORK structural
genomi research consortium; 2.40A {Sorangium cellulosum}
Length = 389
Score = 25.8 bits (57), Expect = 5.6
Identities = 9/58 (15%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 13 PIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMV 70
+ + D+ + + + + ++A + +K+ + G + E++ +A+ G G M+
Sbjct: 241 GVDVAADE-SAASAEDVLRVAAERAATVVNIKLMK-GGIAEALDIAAVARAAGLGLMI 296
>3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A
{Methylococcus capsulatus} PDB: 3rit_A
Length = 356
Score = 25.7 bits (57), Expect = 6.2
Identities = 8/39 (20%), Positives = 16/39 (41%)
Query: 32 AVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMV 70
A AC +K+ + G + + + +A+ G M
Sbjct: 254 AAPPAACGIFNIKLMKCGGLAPARRIATIAETAGIDLMW 292
>3fv9_G Mandelate racemase/muconate lactonizing enzyme; structural
genomics, mandelate racemase/muconatelactonizing
hydrolase, PSI-2; 1.90A {Roseovarius nubinhibens ism}
PDB: 2pce_A
Length = 386
Score = 25.7 bits (57), Expect = 6.2
Identities = 10/48 (20%), Positives = 21/48 (43%)
Query: 23 VTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMV 70
+ + A+ C+ + LKV++ G +T ++ +A G V
Sbjct: 252 IQTETDLIAAIRDDLCDGVGLKVSKQGGITPMLRQRAIAAAAGMVMSV 299
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.389
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,956,734
Number of extensions: 103682
Number of successful extensions: 183
Number of sequences better than 10.0: 1
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 51
Length of query: 133
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 50
Effective length of database: 4,384,350
Effective search space: 219217500
Effective search space used: 219217500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (23.8 bits)