RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12654
(133 letters)
>d2akza1 c.1.11.1 (A:140-433) Enolase {Human (Homo sapiens), gamma
isoform [TaxId: 9606]}
Length = 294
Score = 189 bits (481), Expect = 6e-62
Identities = 101/119 (84%), Positives = 108/119 (90%)
Query: 14 IQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHR 73
IQIVGDDLTVTNPKRI AVE+KACNCLLLKVNQIGSVTE+IQA LA++NGWG MVSHR
Sbjct: 173 IQIVGDDLTVTNPKRIERAVEEKACNCLLLKVNQIGSVTEAIQACKLAQENGWGVMVSHR 232
Query: 74 SGETEDNFIADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGANAKFAGKNFRRP 132
SGETED FIADLVVGL TGQIKTGAPCRSERLAKYNQ++RIEEELG A+FAG NFR P
Sbjct: 233 SGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQLMRIEEELGDEARFAGHNFRNP 291
>d1w6ta1 c.1.11.1 (A:138-433) Enolase {Streptococcus pneumoniae
[TaxId: 1313]}
Length = 296
Score = 184 bits (468), Expect = 6e-60
Identities = 62/128 (48%), Positives = 93/128 (72%), Gaps = 1/128 (0%)
Query: 6 LNDFAPEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNG 65
L + + +Q+VGDD VTN +A +++ A N +L+KVNQIG++TE+ +A +AK+ G
Sbjct: 168 LTERLGKKVQLVGDDFFVTNTDYLARGIQEGAANSILIKVNQIGTLTETFEAIEMAKEAG 227
Query: 66 WGTMVSHRSGETEDNFIADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGANAKFA 125
+ +VSHRSGETED+ IAD+ V + GQIKTG+ R++R+AKYNQ+LRIE++LG A++
Sbjct: 228 YTAVVSHRSGETEDSTIADIAVATNAGQIKTGSLSRTDRIAKYNQLLRIEDQLGEVAEYR 287
Query: 126 G-KNFRRP 132
G K+F
Sbjct: 288 GLKSFYNL 295
>d2ptza1 c.1.11.1 (A:139-429) Enolase {Trypanosoma brucei [TaxId:
5691]}
Length = 291
Score = 183 bits (466), Expect = 1e-59
Identities = 80/119 (67%), Positives = 94/119 (78%)
Query: 11 PEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMV 70
QIVGDDLTVTN +RI A+EKKACN LLLK+NQIG+++E+I + L +NGW MV
Sbjct: 172 KGKTQIVGDDLTVTNTERIKMAIEKKACNSLLLKINQIGTISEAIASSKLCMENGWSVMV 231
Query: 71 SHRSGETEDNFIADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGANAKFAGKNF 129
SHRSGETED +IADLVV L +GQIKTGAPCR ER AK NQ+LRIEEELGA+AKF +
Sbjct: 232 SHRSGETEDTYIADLVVALGSGQIKTGAPCRGERTAKLNQLLRIEEELGAHAKFGFPGW 290
>d2al1a1 c.1.11.1 (A:142-436) Enolase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 295
Score = 174 bits (443), Expect = 3e-56
Identities = 92/124 (74%), Positives = 101/124 (81%)
Query: 9 FAPEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGT 68
F IQIV DDLTVTNPKRIATA+EKKA + LLLKVNQIG+++ESI+A + GWG
Sbjct: 169 FKTAGIQIVADDLTVTNPKRIATAIEKKAADALLLKVNQIGTLSESIKAAQDSFAAGWGV 228
Query: 69 MVSHRSGETEDNFIADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGANAKFAGKN 128
MVSHRSGETED FIADLVVGL TGQIKTGAP RSERLAK NQ+LRIEEELG NA FAG+N
Sbjct: 229 MVSHRSGETEDTFIADLVVGLRTGQIKTGAPARSERLAKLNQLLRIEEELGDNAVFAGEN 288
Query: 129 FRRP 132
F
Sbjct: 289 FHHG 292
>d2fyma1 c.1.11.1 (A:140-431) Enolase {Escherichia coli [TaxId:
562]}
Length = 292
Score = 173 bits (440), Expect = 1e-55
Identities = 64/119 (53%), Positives = 85/119 (71%)
Query: 14 IQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSHR 73
IQ+VGDDL VTN K + +EK N +L+K NQIGS+TE++ A +AK G+ ++SHR
Sbjct: 172 IQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHR 231
Query: 74 SGETEDNFIADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGANAKFAGKNFRRP 132
SGETED IADL VG + GQIKTG+ RS+R+AKYNQ++RIEE LG A + G+ +
Sbjct: 232 SGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKG 290
>d1kkoa1 c.1.11.2 (A:161-411) beta-Methylaspartase {Citrobacter
amalonaticus [TaxId: 35703]}
Length = 251
Score = 137 bits (345), Expect = 6e-42
Identities = 19/110 (17%), Positives = 40/110 (36%), Gaps = 5/110 (4%)
Query: 13 PIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQNGWGTMVSH 72
++IV D+ T + I + +C+ + +K +G + + A L ++G
Sbjct: 141 GVKIVADEWCNT-YQDIVDFTDAGSCHMVQIKTPDLGGIHNIVDAVLYCNKHGMEAYQGG 199
Query: 73 RSGETED--NFIADLVVGLSTGQI--KTGAPCRSERLAKYNQILRIEEEL 118
ETE + + ++ K G +N++ R L
Sbjct: 200 TCNETEISARTCVHVALAARPMRMLIKPGMGFDEGLNIVFNEMNRTIALL 249
>d1kcza1 c.1.11.2 (A:161-413) beta-Methylaspartase {Clostridium
tetanomorphum [TaxId: 1553]}
Length = 253
Score = 130 bits (329), Expect = 2e-39
Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 5/121 (4%)
Query: 5 QLNDFAPEPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIQAHLLAKQN 64
D ++V D+ + + + KA + + +K +G V A + K N
Sbjct: 133 AELDGRGVDAELVADEW-CNTVEDVKFFTDNKAGHMVQIKTPDLGGVNNIADAIMYCKAN 191
Query: 65 GWGTMVSHRSGETED--NFIADLVVGLSTGQI--KTGAPCRSERLAKYNQILRIEEELGA 120
G G ET ++ + Q+ K G + N++ R+ +G
Sbjct: 192 GMGAYCGGTCNETNRSAEVTTNIGMACGARQVLAKPGMGVDEGMMIVKNEMNRVLALVGR 251
Query: 121 N 121
Sbjct: 252 R 252
>d1qnaa1 d.129.1.1 (A:17-115) TATA-box binding protein (TBP),
C-terminal domain {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 99
Score = 25.9 bits (57), Expect = 0.92
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 96 TGAPCRSERLAKYNQILRIEEELGANAKFAGKNFR 130
TGA + RI ++LG AKF K+F+
Sbjct: 66 TGAKSEDFSKMAARKYARIVQKLGFPAKF--KDFK 98
>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate
dehydrogenase (IMPDH) {Thermotoga maritima [TaxId:
2336]}
Length = 330
Score = 25.8 bits (56), Expect = 1.8
Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 50 SVTESIQAHLLAKQNGWGTMVSHRSGETEDNFIAD-----LVVGLSTG 92
+VTE+ A LA++ G G + + + + + ++ L+VG + G
Sbjct: 47 TVTEAALAKALAREGGIGIIHKNLTPDEQARQVSIVKKTRLLVGAAVG 94
>d2btva_ e.28.1.1 (A:) BTV vp3 {Bluetongue virus, strain 1 [TaxId:
40051]}
Length = 845
Score = 24.8 bits (54), Expect = 3.9
Identities = 8/34 (23%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 3 LFQLNDFAPEPIQIVGDDLTVTNPKRIATAVEKK 36
+ +++ + E + VGD +T P++ + + KK
Sbjct: 45 VLRVDTYY-EEMSQVGDVITEDEPEKFYSTIIKK 77
>d2bu3a1 d.3.1.14 (A:29-238) Primitive phytochelatin synthase
{Nostoc sp. pcc 7120 [TaxId: 103690]}
Length = 210
Score = 24.4 bits (53), Expect = 5.2
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 56 QAHLLAKQNGWGTMVSHRSGETEDNFIADLV 86
+ L G V+H S ++F +
Sbjct: 99 ELGRLIASYGVKVKVNHASDTNIEDFRKQVA 129
>d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate
dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId:
5724]}
Length = 362
Score = 24.4 bits (52), Expect = 5.6
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 50 SVTESIQAHLLAKQNGWGTMVSHRSGETEDNF 81
SV+ A LA++ G + +S E++
Sbjct: 60 SVSGEKMAIALAREGGISFIFGSQSIESQAAM 91
>d1rzna_ c.52.1.28 (A:) Recombination protein U (RecU)/PBP related
factor A (PrfA) {Bacillus subtilis [TaxId: 1423]}
Length = 165
Score = 23.5 bits (51), Expect = 9.1
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 11 PEPIQIVGDDLTVTNPKRIATAVEKKACNC 40
P P+QIV + I A K++
Sbjct: 25 PTPVQIVNVHYPKRSAAVIKEAYFKQSSTT 54
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.389
Gapped
Lambda K H
0.267 0.0546 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 467,503
Number of extensions: 18153
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 13
Length of query: 133
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 57
Effective length of database: 1,364,116
Effective search space: 77754612
Effective search space used: 77754612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.7 bits)