Query psy12655
Match_columns 299
No_of_seqs 138 out of 1111
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 16:09:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12655.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12655hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2670|consensus 100.0 2E-114 4E-119 804.1 25.6 299 1-299 1-300 (433)
2 COG0148 Eno Enolase [Carbohydr 100.0 2E-107 5E-112 774.3 30.0 282 2-299 3-287 (423)
3 PTZ00081 enolase; Provisional 100.0 3.5E-98 8E-103 735.9 33.3 297 1-299 2-308 (439)
4 PLN00191 enolase 100.0 1.9E-97 4E-102 733.5 33.7 296 1-299 26-322 (457)
5 PTZ00378 hypothetical protein; 100.0 1.9E-92 4.1E-97 696.2 31.0 276 1-299 49-355 (518)
6 cd03313 enolase Enolase: Enola 100.0 1.3E-83 2.9E-88 629.0 30.8 285 5-299 1-288 (408)
7 PRK00077 eno enolase; Provisio 100.0 1.2E-81 2.7E-86 618.0 30.3 284 1-299 2-288 (425)
8 TIGR01060 eno phosphopyruvate 100.0 2.3E-80 5.1E-85 608.9 27.4 284 3-299 1-289 (425)
9 PRK08350 hypothetical protein; 100.0 5.1E-74 1.1E-78 541.0 25.5 217 2-299 3-221 (341)
10 PF00113 Enolase_C: Enolase, C 100.0 2.6E-55 5.5E-60 412.3 14.8 157 143-299 2-160 (295)
11 PF03952 Enolase_N: Enolase, N 100.0 1.1E-54 2.3E-59 365.0 14.5 131 2-134 1-132 (132)
12 cd03321 mandelate_racemase Man 99.0 1.2E-07 2.5E-12 91.6 23.8 208 1-298 1-222 (355)
13 cd03327 MR_like_2 Mandelate ra 98.9 1.5E-07 3.2E-12 90.5 20.5 110 2-146 1-110 (341)
14 TIGR01502 B_methylAsp_ase meth 98.8 1E-06 2.2E-11 87.1 20.7 215 19-298 51-273 (408)
15 PRK15072 bifunctional D-altron 98.8 6.8E-07 1.5E-11 88.0 19.1 120 1-151 1-121 (404)
16 cd03325 D-galactonate_dehydrat 98.7 2.4E-06 5.1E-11 82.5 20.0 209 2-298 1-212 (352)
17 cd03314 MAL Methylaspartate am 98.6 5.6E-06 1.2E-10 80.9 20.7 210 18-298 13-237 (369)
18 cd03317 NAAAR N-acylamino acid 98.6 6.6E-06 1.4E-10 79.2 20.6 95 18-135 25-120 (354)
19 PRK14017 galactonate dehydrata 98.5 1.2E-05 2.6E-10 78.5 20.3 209 1-298 1-213 (382)
20 cd03316 MR_like Mandelate race 98.5 1.9E-05 4E-10 75.9 20.9 213 2-298 1-225 (357)
21 cd03322 rpsA The starvation se 98.5 6.4E-06 1.4E-10 79.9 17.5 117 2-147 1-118 (361)
22 cd03329 MR_like_4 Mandelate ra 98.4 7.6E-05 1.7E-09 72.5 22.4 168 66-298 58-225 (368)
23 TIGR02534 mucon_cyclo muconate 98.3 4.1E-05 8.9E-10 74.3 18.5 194 17-298 27-223 (368)
24 PRK15440 L-rhamnonate dehydrat 98.3 3.9E-05 8.5E-10 75.6 17.7 76 66-146 82-157 (394)
25 cd03318 MLE Muconate Lactonizi 98.3 9.7E-05 2.1E-09 71.5 18.8 191 18-298 29-224 (365)
26 cd03328 MR_like_3 Mandelate ra 98.2 8.3E-05 1.8E-09 71.9 17.6 67 66-135 53-120 (352)
27 COG4948 L-alanine-DL-glutamate 98.1 0.00021 4.5E-09 69.4 17.9 92 19-135 31-124 (372)
28 cd03319 L-Ala-DL-Glu_epimerase 98.1 0.00023 5E-09 67.4 17.6 158 62-298 54-213 (316)
29 TIGR01928 menC_lowGC/arch o-su 98.1 0.00037 8.1E-09 66.6 18.2 95 17-135 21-116 (324)
30 cd03324 rTSbeta_L-fuconate_deh 98.0 0.0011 2.4E-08 65.8 20.4 111 2-135 2-135 (415)
31 cd03326 MR_like_1 Mandelate ra 97.9 0.0009 1.9E-08 65.8 17.7 165 68-298 60-241 (385)
32 TIGR03247 glucar-dehydr glucar 97.8 0.0018 3.8E-08 64.9 18.2 92 17-135 32-133 (441)
33 cd03323 D-glucarate_dehydratas 97.7 0.0099 2.1E-07 58.6 21.0 100 17-147 28-139 (395)
34 PF02746 MR_MLE_N: Mandelate r 97.5 0.0009 2E-08 54.4 10.1 91 17-135 26-117 (117)
35 cd00308 enolase_like Enolase-s 97.4 0.0018 3.9E-08 58.6 10.6 25 111-135 44-68 (229)
36 PRK15129 L-Ala-D/L-Glu epimera 96.7 0.074 1.6E-06 50.8 15.5 60 60-135 53-112 (321)
37 PLN02980 2-oxoglutarate decarb 96.7 0.15 3.2E-06 59.0 20.0 30 106-135 1035-1064(1655)
38 PRK05105 O-succinylbenzoate sy 95.1 0.92 2E-05 43.5 15.0 55 219-298 140-196 (322)
39 cd03315 MLE_like Muconate lact 95.0 0.53 1.2E-05 43.4 12.7 119 111-298 45-165 (265)
40 PF05034 MAAL_N: Methylasparta 94.6 0.16 3.5E-06 44.0 7.5 101 19-136 52-155 (159)
41 COG3799 Mal Methylaspartate am 90.9 0.92 2E-05 43.5 7.5 106 63-177 87-197 (410)
42 PF01188 MR_MLE: Mandelate rac 73.0 12 0.00025 27.3 5.5 24 272-298 23-46 (67)
43 cd03320 OSBS o-Succinylbenzoat 63.3 25 0.00054 32.4 6.8 54 220-298 110-163 (263)
44 TIGR01927 menC_gamma/gm+ o-suc 60.0 29 0.00063 33.0 6.8 56 219-298 136-193 (307)
45 PRK02901 O-succinylbenzoate sy 59.7 34 0.00074 33.0 7.3 56 219-298 116-171 (327)
46 PRK02714 O-succinylbenzoate sy 59.0 37 0.00079 32.4 7.3 56 219-298 145-202 (320)
47 PF03444 HrcA_DNA-bdg: Winged 55.1 17 0.00036 28.2 3.4 51 172-227 23-73 (78)
48 PF06545 DUF1116: Protein of u 52.3 39 0.00084 31.0 5.9 61 56-127 98-158 (216)
49 PRK10857 DNA-binding transcrip 34.2 31 0.00068 30.0 2.3 59 174-233 27-85 (164)
50 TIGR00738 rrf2_super rrf2 fami 33.6 37 0.00081 27.5 2.6 58 176-234 29-86 (132)
51 COG0245 IspF 2C-methyl-D-eryth 32.6 1.1E+02 0.0025 26.7 5.5 55 186-245 38-99 (159)
52 PF03681 UPF0150: Uncharacteri 32.2 55 0.0012 22.0 2.8 16 218-233 29-44 (48)
53 COG1503 eRF1 Peptide chain rel 31.9 19 0.00041 36.1 0.6 28 272-299 361-390 (411)
54 PF10231 DUF2315: Uncharacteri 31.5 48 0.001 27.9 2.9 19 269-287 74-92 (126)
55 PF13174 TPR_6: Tetratricopept 31.0 47 0.001 19.5 2.1 17 273-289 15-31 (33)
56 cd00554 MECDP_synthase MECDP_s 30.7 1.4E+02 0.003 26.0 5.7 47 186-237 37-89 (153)
57 TIGR02010 IscR iron-sulfur clu 30.4 32 0.00069 28.5 1.7 58 175-233 28-85 (135)
58 cd00453 FTBP_aldolase_II Fruct 29.7 89 0.0019 30.6 4.8 105 117-229 75-192 (340)
59 TIGR00151 ispF 2C-methyl-D-ery 27.7 1.7E+02 0.0037 25.5 5.7 54 186-244 37-97 (155)
60 PF14483 Cut8_M: Cut8 dimerisa 27.4 63 0.0014 21.4 2.4 19 271-289 9-27 (38)
61 KOG4094|consensus 26.9 51 0.0011 28.7 2.3 21 267-287 119-139 (178)
62 PF08013 Tagatose_6_P_K: Tagat 25.3 2.7E+02 0.0058 28.2 7.3 66 204-288 50-116 (424)
63 PF09876 DUF2103: Predicted me 24.3 3.4E+02 0.0073 22.1 6.5 35 16-52 52-86 (103)
64 COG0276 HemH Protoheme ferro-l 23.4 2.5E+02 0.0054 27.3 6.6 61 165-234 257-317 (320)
65 PRK00084 ispF 2-C-methyl-D-ery 23.4 1.9E+02 0.004 25.4 5.2 54 186-244 40-100 (159)
66 PF02542 YgbB: YgbB family; I 22.6 91 0.002 27.2 3.1 53 187-244 39-98 (157)
67 PF03828 PAP_assoc: Cid1 famil 21.1 39 0.00085 23.6 0.5 11 288-298 47-57 (60)
68 COG2088 SpoVG Uncharacterized 21.0 1.9E+02 0.0041 23.0 4.3 28 1-29 1-28 (95)
69 smart00309 PAH Pancreatic horm 20.0 1.9E+02 0.0042 19.1 3.5 23 267-289 7-29 (36)
No 1
>KOG2670|consensus
Probab=100.00 E-value=1.6e-114 Score=804.05 Aligned_cols=299 Identities=77% Similarity=1.185 Sum_probs=294.2
Q ss_pred CceeeEEEeEEeCCCCCeeEEEEEEECCCceEEEeecCCCCcceeeeeeccCCcccccCccHHHHHHHHHHhHHHHHhcC
Q psy12655 1 MPISKIHARQIFDSRGNPTVEVDLTTELGLFRAAVPSGASTGIYEALELRDNDKAHYHGKGVTKAVGFINNDIAPALLKE 80 (299)
Q Consensus 1 ~~I~~v~ar~ilDsrG~pTvevev~~~~g~~ra~~psGaS~G~~Ea~elrd~~~~~~~Gkgv~~Av~~in~~i~p~Li~~ 80 (299)
|.|.+|+|||||||||||||||+++|+.|++||+||||||||.|||+||||+|+++|.||||.+||.|||+.|+|+|+++
T Consensus 1 m~~~kv~aR~I~dSRGnPTVEVdL~T~~G~fRaavPSGAStGi~EAlELrDgdK~~y~GkgV~kaV~niN~~i~pali~~ 80 (433)
T KOG2670|consen 1 MSIIKVKARQIYDSRGNPTVEVDLTTEKGVFRAAVPSGASTGIYEALELRDGDKSKYMGKGVLKAVGNINNTIAPALIKK 80 (433)
T ss_pred CCceeeehhhhhhcCCCCceeEEEEecCcceEeecCCCCccchhhhhheecCCcceecchhHHHHHHHHHHHHHHHHHcc
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccchHHHHHHHHhhcCCCCcccCCChhhHHHHHHHHHHHHHhcCCchHHHHHhhhCCC-ccccccceEEeecCCcCC
Q psy12655 81 SFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLYKHLADLAGNS-NIILPVPAFNVINGGSHA 159 (299)
Q Consensus 81 g~~~~dQ~~ID~~L~~lDgT~nks~lGaNailavSlA~akAaA~~~~~pLy~yi~~l~g~~-~~~lP~P~~nvinGG~ha 159 (299)
++++++|+.||++|++||||+|||++||||||+||||+|||+|..+++|||+||+++.|.. ++.||||.|||||||.||
T Consensus 81 ~~dv~~Q~~iD~~mi~LDGTeNKsklGaNaIlgvSlavckagAa~k~vplykhia~lag~~~~~vlPVPaFNVlNGGsHA 160 (433)
T KOG2670|consen 81 NLDVTDQKAIDNFMIELDGTENKSKLGANAILGVSLAVCKAGAAEKGVPLYKHIADLAGNKQPYVLPVPAFNVLNGGSHA 160 (433)
T ss_pred CCChhhHHHHHHHHHhccCCcccccccchhhHHHHHHHHhhhhhhcCCcHHHHHHHhcCCCCceEecccceeeecCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999987 689999999999999999
Q ss_pred CCcccceeEEEEecCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCCCCCcCCCCCChHHHHHHHHHHHHHcccccc
Q psy12655 160 GNKLAMQEFMILPTGASSFSEAMKIGSEVYHHLKKVINTKFGLDATAVGDEGGFAPNILDNKEGLRLIVEAIEKAGYTGK 239 (299)
Q Consensus 160 ~~~l~iQEfmiiP~ga~s~~eal~~~~ev~~~l~~~l~~k~G~~~t~vgdeGgfap~~~~~e~aL~ll~eAi~~ag~~~~ 239 (299)
+|+|.+|||||+|+|+.||+|+|||++||||+||.++++|||...|+|||||||||++.+++|+|+||.+||++|||+++
T Consensus 161 Gn~lAmQEfMIlP~ga~sf~eamr~GsevYh~LK~vik~kyG~~a~nVGDEGGfAPnI~~~~E~L~Li~~Ai~kagyt~k 240 (433)
T KOG2670|consen 161 GNKLAMQEFMILPVGADSFAEAMRMGSEVYHHLKSVIKEKYGADATNVGDEGGFAPNIQTNEEALDLIKEAINKAGYTGK 240 (433)
T ss_pred cchhhhhhheecccCchhHHHHHHHhHHHHHHHHHHHHHHhCccccccccccCcCCCccchHHHHHHHHHHHHhcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeeccccccccCCceeeecCCCCCCCCCccCHHHHHHHHHHHHhcCCeeEeecCCCC
Q psy12655 240 VEIGMDVAASEFFKEGQYDLDFKNPNSDKSQWLPADKLTALYQEFIKEYPIVSIEDPMLR 299 (299)
Q Consensus 240 i~ialD~AAse~~~~g~Y~~~fk~~~~~~~~~~t~~elid~y~~l~~~yPIvsiEDp~~e 299 (299)
|.||+|+|||+||.+|||+++||+|++++.+++|.++|.|+|.+++++|||+||||||+|
T Consensus 241 ikIgmDvAaseF~~dgkYDLdfk~~~~d~s~~~s~~~L~dlY~~~~k~yPivSiEDPFdq 300 (433)
T KOG2670|consen 241 VKIGMDVAASEFYKDGKYDLDFKSPNSDPSRWLSGDQLADLYKSFIKDYPIVSIEDPFDQ 300 (433)
T ss_pred eEEEEeechhhhhcCCcccccCcCCCCCcccccCHHHHHHHHHHHHhcCCeeeecCCcch
Confidence 999999999999999999999999988999999999999999999999999999999997
No 2
>COG0148 Eno Enolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.4e-107 Score=774.27 Aligned_cols=282 Identities=60% Similarity=0.957 Sum_probs=274.0
Q ss_pred ceeeEEEeEEeCCCCCeeEEEEEEECCCce-EEEeecCCCCcceeeeeeccCCcccccCccHHHHHHHHHHhHHHHHhcC
Q psy12655 2 PISKIHARQIFDSRGNPTVEVDLTTELGLF-RAAVPSGASTGIYEALELRDNDKAHYHGKGVTKAVGFINNDIAPALLKE 80 (299)
Q Consensus 2 ~I~~v~ar~ilDsrG~pTvevev~~~~g~~-ra~~psGaS~G~~Ea~elrd~~~~~~~Gkgv~~Av~~in~~i~p~Li~~ 80 (299)
.|++|++|+||||||||||||+|+|++|.+ ||+||||||||.+||+|+||+| +||.||||++||++||++|+|+|+
T Consensus 3 ~I~~i~aReIlDSRGnpTVEveV~~~~g~~g~a~vPSGAStG~~EavElrdgd-~ry~gkGV~~AV~nVn~~Iap~Li-- 79 (423)
T COG0148 3 AIEDVIAREILDSRGNPTVEVEVTLEDGFGGRAAVPSGASTGEHEAVELRDGD-SRYLGKGVLKAVANVNEIIAPALI-- 79 (423)
T ss_pred ccceeEEEEEEcCCCCceEEEEEEEcCCCcceeecCCCCCCCCceeEEecCCc-cccccccHHHHHHHHHHHHHHHHc--
Confidence 499999999999999999999999999988 9999999999999999999999 799999999999999999999999
Q ss_pred CCCccchHHHHHHHHhhcCCCCcccCCChhhHHHHHHHHHHHHHhcCCchHHHHHhhhCCCccccccceEEeecCCcCCC
Q psy12655 81 SFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLYKHLADLAGNSNIILPVPAFNVINGGSHAG 160 (299)
Q Consensus 81 g~~~~dQ~~ID~~L~~lDgT~nks~lGaNailavSlA~akAaA~~~~~pLy~yi~~l~g~~~~~lP~P~~nvinGG~ha~ 160 (299)
|+|++||..||++|++||||+|||+||+|+|||||||+|||||+++++|||+||+ |...++||+|||||||||+||+
T Consensus 80 G~da~dQ~~ID~~lielDGT~Nks~lGaNailgVSlAvAkAAA~~l~~PLy~YlG---G~~a~~lPvPm~NvinGG~HA~ 156 (423)
T COG0148 80 GLDATDQALIDSLLIELDGTENKSKLGANAILGVSLAVAKAAAASLGIPLYRYLG---GLNALVLPVPMMNVINGGAHAD 156 (423)
T ss_pred CCCcccHHHHHHHHHHccCCCcccccccHHHHHHHHHHHHHHHHhcCCcHHHHhc---CccccccccceeeeecccccCC
Confidence 7999999999999999999999999999999999999999999999999999999 8888999999999999999999
Q ss_pred CcccceeEEEEecCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCCCCCcCCCCCChHHHHHHHHHHHHHcccc--c
Q psy12655 161 NKLAMQEFMILPTGASSFSEAMKIGSEVYHHLKKVINTKFGLDATAVGDEGGFAPNILDNKEGLRLIVEAIEKAGYT--G 238 (299)
Q Consensus 161 ~~l~iQEfmiiP~ga~s~~eal~~~~ev~~~l~~~l~~k~G~~~t~vgdeGgfap~~~~~e~aL~ll~eAi~~ag~~--~ 238 (299)
|.+|||||||+|.|++||.|++||+++|||+|+++|+++ |. .|+|||||||+|+++++++|||+|.+||+++||+ .
T Consensus 157 n~~d~QEFmI~p~ga~sf~ealr~~~ev~h~lk~~l~~~-g~-~t~vGDEGgfAP~l~~~eeald~i~~Aie~agy~~g~ 234 (423)
T COG0148 157 NNLDIQEFMIMPVGAESFKEALRAGAEVFHHLKKLLKEK-GL-STGVGDEGGFAPNLKSNEEALDILVEAIEEAGYEPGE 234 (423)
T ss_pred CCccceeEEEeecChHHHHHHHHHHHHHHHHHHHHHhhc-Cc-cccccCCcccCCCCCccHHHHHHHHHHHHHhCCCCCc
Confidence 999999999999999999999999999999999999987 87 6779999999999999999999999999999999 4
Q ss_pred ceEEEeeccccccccCCceeeecCCCCCCCCCccCHHHHHHHHHHHHhcCCeeEeecCCCC
Q psy12655 239 KVEIGMDVAASEFFKEGQYDLDFKNPNSDKSQWLPADKLTALYQEFIKEYPIVSIEDPMLR 299 (299)
Q Consensus 239 ~i~ialD~AAse~~~~g~Y~~~fk~~~~~~~~~~t~~elid~y~~l~~~yPIvsiEDp~~e 299 (299)
+|++||||||||||++|+|+|+ +..+|++||+|||.+|+++|||+||||||+|
T Consensus 235 ~i~~alD~Aasefy~~~~Y~~~--------~~~~~~~e~i~~~~~Lv~~YpivsiEDpl~E 287 (423)
T COG0148 235 DIALALDVAASEFYKDGKYVLE--------GESLTSEELIEYYLELVKKYPIVSIEDPLSE 287 (423)
T ss_pred ceeeeehhhhhhhccCCeeeec--------CcccCHHHHHHHHHHHHHhCCEEEEcCCCCc
Confidence 6999999999999999999993 3489999999999999999999999999997
No 3
>PTZ00081 enolase; Provisional
Probab=100.00 E-value=3.5e-98 Score=735.91 Aligned_cols=297 Identities=69% Similarity=1.048 Sum_probs=282.2
Q ss_pred CceeeEEEeEEeCCCCCeeEEEEEEECCCceEEEeecCCCCcceeeeeeccCCcccccCccHHHHHHHHHHhHHHHHhcC
Q psy12655 1 MPISKIHARQIFDSRGNPTVEVDLTTELGLFRAAVPSGASTGIYEALELRDNDKAHYHGKGVTKAVGFINNDIAPALLKE 80 (299)
Q Consensus 1 ~~I~~v~ar~ilDsrG~pTvevev~~~~g~~ra~~psGaS~G~~Ea~elrd~~~~~~~Gkgv~~Av~~in~~i~p~Li~~ 80 (299)
|+|++|++|+||||||||||||+|+|++|.+||+||||||||.+||+||||+|+.||+||||.+||++||+.|+|+|+
T Consensus 2 ~~I~~v~~r~i~dSrg~ptvev~v~~~~G~~~a~~psgastG~~Ea~elrd~~~~~y~g~gv~~Av~~v~~~i~~~Li-- 79 (439)
T PTZ00081 2 STIKSIKAREILDSRGNPTVEVDLTTEKGVFRAAVPSGASTGIYEALELRDGDKSRYLGKGVLKAVENVNEIIAPALI-- 79 (439)
T ss_pred cEEEEEEEEEEecCCCCceEEEEEEECCCCEEEecccCCCCceeeEeeccCCCccccCCccHHHHHHHHHHHHHHHHc--
Confidence 679999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred CCCccchHHHHHHHHh-hcCCCC-----cccCCChhhHHHHHHHHHHHHHhcCCchHHHHHhhhCC--CccccccceEEe
Q psy12655 81 SFEVTQQKEIDEFMIK-LDGTEN-----KSKFGANAILGVSLAVAKAGAAKKGVPLYKHLADLAGN--SNIILPVPAFNV 152 (299)
Q Consensus 81 g~~~~dQ~~ID~~L~~-lDgT~n-----ks~lGaNailavSlA~akAaA~~~~~pLy~yi~~l~g~--~~~~lP~P~~nv 152 (299)
|+++.||++||++|++ ||||+| ||+||+|||+|||||+|||+|+.+++|||+||+++.|. .+++||+||+||
T Consensus 80 G~d~~dq~~iD~~l~~~ldgt~n~~~~~ks~lGanailavS~A~a~AaA~~~~~PLy~yL~~~~g~~~~~~~lP~P~~ni 159 (439)
T PTZ00081 80 GKDVTDQKKLDKLMVEQLDGTKNEWGWCKSKLGANAILAVSMAVARAAAAAKGVPLYKYLAQLAGKPTDKFVLPVPCFNV 159 (439)
T ss_pred CCChhhHHHHHHHHHHhccCCcccccccccccchHHHHHHHHHHHHHHHHHcCCcHHHHHHHhcCCccCCccccceeEEe
Confidence 8999999999999999 999999 99999999999999999999999999999999766564 467899999999
Q ss_pred ecCCcCCCCcccceeEEEEecCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCCCCCcCCCCCChHHHHHHHHHHHH
Q psy12655 153 INGGSHAGNKLAMQEFMILPTGASSFSEAMKIGSEVYHHLKKVINTKFGLDATAVGDEGGFAPNILDNKEGLRLIVEAIE 232 (299)
Q Consensus 153 inGG~ha~~~l~iQEfmiiP~ga~s~~eal~~~~ev~~~l~~~l~~k~G~~~t~vgdeGgfap~~~~~e~aL~ll~eAi~ 232 (299)
||||+|++|+++||||||+|.++.+|.|++||+++|||+|+++|+++||..+++|||||||+|++++++++|++|++||+
T Consensus 160 inGG~ha~~~~~~qefmi~P~ga~s~~ea~~~~~ev~~~l~~il~~~~g~~~~~vgdeGgfap~~~~~eeal~ll~eAi~ 239 (439)
T PTZ00081 160 INGGKHAGNKLAFQEFMIAPVGAPSFKEALRMGAEVYHSLKSVIKKKYGLDATNVGDEGGFAPNIKDPEEALDLLVEAIK 239 (439)
T ss_pred ccCcccccccccceEEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCcCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998679999999999999999999999999999
Q ss_pred HcccccceEEEeecccccccc--CCceeeecCCCCCCCCCccCHHHHHHHHHHHHhcCCeeEeecCCCC
Q psy12655 233 KAGYTGKVEIGMDVAASEFFK--EGQYDLDFKNPNSDKSQWLPADKLTALYQEFIKEYPIVSIEDPMLR 299 (299)
Q Consensus 233 ~ag~~~~i~ialD~AAse~~~--~g~Y~~~fk~~~~~~~~~~t~~elid~y~~l~~~yPIvsiEDp~~e 299 (299)
++||+++|.||||||||+||+ +++|+++|+.|.+..++.+|++||+|||.+|+++|||++|||||++
T Consensus 240 ~ag~~~~v~i~lD~Aase~~~~~~~~Y~~~f~~~~~~~~~~~s~~eli~~~~~~l~~y~I~~IEDPl~~ 308 (439)
T PTZ00081 240 KAGYEGKVKICMDVAASEFYDKEKKVYDLDFKNPNNDKSNKLTGEELVELYLDLVKKYPIVSIEDPFDQ 308 (439)
T ss_pred HcCCcCceEEEEehhhhhhhhccCCceeeeeccccCccccccCHHHHHHHHHHHHhcCCcEEEEcCCCc
Confidence 999998899999999999994 6899998876532334568999999999999999999999999975
No 4
>PLN00191 enolase
Probab=100.00 E-value=1.9e-97 Score=733.52 Aligned_cols=296 Identities=72% Similarity=1.101 Sum_probs=281.8
Q ss_pred CceeeEEEeEEeCCCCCeeEEEEEEECCCceEEEeecCCCCcceeeeeeccCCcccccCccHHHHHHHHHHhHHHHHhcC
Q psy12655 1 MPISKIHARQIFDSRGNPTVEVDLTTELGLFRAAVPSGASTGIYEALELRDNDKAHYHGKGVTKAVGFINNDIAPALLKE 80 (299)
Q Consensus 1 ~~I~~v~ar~ilDsrG~pTvevev~~~~g~~ra~~psGaS~G~~Ea~elrd~~~~~~~Gkgv~~Av~~in~~i~p~Li~~ 80 (299)
|+|++|++|+||||||||||||+|+|++|.+||+||||||||.+||+|+||+|++ |+||||++||++||+.|+|+|+
T Consensus 26 ~~I~~v~~r~ildsrG~PtVeveV~~~~G~~~a~~psgastG~~Ea~elrd~~~~-~~g~gv~~Av~~v~~~ia~~Li-- 102 (457)
T PLN00191 26 ATITKVKARQIIDSRGNPTVEVDLHTSKGMFRAAVPSGASTGIYEALELRDGDKD-YLGKGVLKAVKNVNEIIAPALI-- 102 (457)
T ss_pred CeeeEEEEEEEEcCCCCeEEEEEEEECCCCEEEEeccCCCCCcceeeeccCCCcc-cCCccHHHHHHHHHHHHHHHHc--
Confidence 4699999999999999999999999999988999999999999999999999987 9999999999999999999999
Q ss_pred CCCccchHHHHHHHHhhcCCCCcccCCChhhHHHHHHHHHHHHHhcCCchHHHHHhhhCCCccccccceEEeecCCcCCC
Q psy12655 81 SFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLYKHLADLAGNSNIILPVPAFNVINGGSHAG 160 (299)
Q Consensus 81 g~~~~dQ~~ID~~L~~lDgT~nks~lGaNailavSlA~akAaA~~~~~pLy~yi~~l~g~~~~~lP~P~~nvinGG~ha~ 160 (299)
|+++.||++||++|+++|||+||++||+|||+|||||+|||+|+.+++|||+||+++.|....+||+||+||||||+|++
T Consensus 103 G~~~~dq~~iD~~l~~ldgt~nk~~lGanailavS~A~a~AaA~~~~~PLy~~l~~~gg~~~~~lP~p~~niinGG~ha~ 182 (457)
T PLN00191 103 GMDPTDQTQIDNFMLELDGTPNKGKLGANAILAVSLAVCKAGAAEKGVPLYKHIADLAGNKKLVLPVPAFNVINGGSHAG 182 (457)
T ss_pred CCChhhHHHHHHHHHHccCCCCccccchhHHHHHHHHHHHHHHHHcCCcHHHHHHhhCCCCCccccceeEEeecCccccc
Confidence 89999999999999999999999999999999999999999999999999999977657667799999999999999999
Q ss_pred CcccceeEEEEecCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCCCCCcCCCCCChHHHHHHHHHHHHHcccccce
Q psy12655 161 NKLAMQEFMILPTGASSFSEAMKIGSEVYHHLKKVINTKFGLDATAVGDEGGFAPNILDNKEGLRLIVEAIEKAGYTGKV 240 (299)
Q Consensus 161 ~~l~iQEfmiiP~ga~s~~eal~~~~ev~~~l~~~l~~k~G~~~t~vgdeGgfap~~~~~e~aL~ll~eAi~~ag~~~~i 240 (299)
|+++||||||+|.++.||+|++||+++|||+|+++|++++|..+++|||||||+|++++++|+|++|++||+++||+++|
T Consensus 183 ~~~~~qefmi~P~ga~s~~ea~~~~~ev~~~l~~il~~~~g~~~~~vgdeGg~ap~~~~~~eal~ll~eAi~~ag~~~~i 262 (457)
T PLN00191 183 NKLAMQEFMILPVGASSFKEAMQMGSEVYHHLKAVIKKKYGQDACNVGDEGGFAPNIQDNKEGLELLKEAIEKAGYTGKI 262 (457)
T ss_pred cccchheeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCcCccCCCCCcCCCCCCHHHHHHHHHHHHHHcCCCCce
Confidence 99999999999999999999999999999999999999999867999999999999999999999999999999999789
Q ss_pred EEEeecccccccc-CCceeeecCCCCCCCCCccCHHHHHHHHHHHHhcCCeeEeecCCCC
Q psy12655 241 EIGMDVAASEFFK-EGQYDLDFKNPNSDKSQWLPADKLTALYQEFIKEYPIVSIEDPMLR 299 (299)
Q Consensus 241 ~ialD~AAse~~~-~g~Y~~~fk~~~~~~~~~~t~~elid~y~~l~~~yPIvsiEDp~~e 299 (299)
.|||||||||||+ +|+|+|.|+.+.+..++.+|++||++||.+|+++|||++|||||++
T Consensus 263 ~i~lD~Aase~~~~~~~Y~~~~~~~~~~~~~~~s~~e~i~~~~~L~~~y~I~~IEDPl~~ 322 (457)
T PLN00191 263 KIGMDVAASEFYTKDKKYDLDFKEENNDGSNKKSGDELIDLYKEFVSDYPIVSIEDPFDQ 322 (457)
T ss_pred EEEeehhhhhhcccCCceEeeccccCCCcccccCHHHHHHHHHHHhhcCCcEEEECCCCc
Confidence 9999999999998 8999998765433344678999999999999999999999999975
No 5
>PTZ00378 hypothetical protein; Provisional
Probab=100.00 E-value=1.9e-92 Score=696.15 Aligned_cols=276 Identities=22% Similarity=0.329 Sum_probs=254.9
Q ss_pred CceeeEEEeEEeCCCCCeeEEEEEEECCCceEEEeecCCCCcceeeeeeccCCccc-c-cCccHHHHHHHHHHhHHHHHh
Q psy12655 1 MPISKIHARQIFDSRGNPTVEVDLTTELGLFRAAVPSGASTGIYEALELRDNDKAH-Y-HGKGVTKAVGFINNDIAPALL 78 (299)
Q Consensus 1 ~~I~~v~ar~ilDsrG~pTvevev~~~~g~~ra~~psGaS~G~~Ea~elrd~~~~~-~-~Gkgv~~Av~~in~~i~p~Li 78 (299)
+.|++|++||||||||||||||+|+|.+|.+ |||||||| ||+||||+|+.+ | .||||.+||+ +.|+|+|+
T Consensus 49 ~~I~~i~areIlDSrGnPTVev~v~l~~G~~---vPSGAStG--EA~elRDgd~~~~~g~gkgV~~Av~---~~i~p~Li 120 (518)
T PTZ00378 49 DEIRALVHNEVLSPAGETVLRFTLELLNGME---VSSGALLS--PSHGERDGEADATLDPAEYTTEALQ---NSYFPRLL 120 (518)
T ss_pred CeeeEEEEEEEEcCCCCeeEEEEEEECCCCE---ECCCCccc--ceeeeecCCcccccCCCccHHHHHH---hhhHHHHc
Confidence 3699999999999999999999999999974 99999999 999999999876 8 9999999999 57999999
Q ss_pred cCCCCccchHHHHHHHHhhcCCCCcccCCChhhHHHHHHHHHHHHHhcCCchHHHHHhhhCC----CccccccceEEeec
Q psy12655 79 KESFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLYKHLADLAGN----SNIILPVPAFNVIN 154 (299)
Q Consensus 79 ~~g~~~~dQ~~ID~~L~~lDgT~nks~lGaNailavSlA~akAaA~~~~~pLy~yi~~l~g~----~~~~lP~P~~nvin 154 (299)
|++++||++||++|+++|||+||+++|+|+|+|||||+|||||+++++|||+||+.+.+. .++.||+|||||||
T Consensus 121 --g~~~~dQ~~iD~~Li~lDGT~nks~lGaNailavS~A~akAAA~~~~~PLy~yL~~~~~~~~~~~~~~lP~P~~Niin 198 (518)
T PTZ00378 121 --QLGARDQREFDSTLRAALSTSPLANVGSAVQWALSIVASLAAARCRSVPLFQYLRALFGSLTSVETFSMPQLCITFFG 198 (518)
T ss_pred --CCChHhHHHHHHHHHHhcCCCcccchhhHHHHHHHHHHHHHHHHHcCCCHHHHhhccccccccCCCcccCccceEeec
Confidence 899999999999999999999999999999999999999999999999999999865432 35789999999999
Q ss_pred CCcCCCCcccceeEEEEecCC--CCHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCCCCCc-CCCCCChHHHHHHHHHHH
Q psy12655 155 GGSHAGNKLAMQEFMILPTGA--SSFSEAMKIGSEVYHHLKKVINTKFGLDATAVGDEGGF-APNILDNKEGLRLIVEAI 231 (299)
Q Consensus 155 GG~ha~~~l~iQEfmiiP~ga--~s~~eal~~~~ev~~~l~~~l~~k~G~~~t~vgdeGgf-ap~~~~~e~aL~ll~eAi 231 (299)
||+||+|+++||||||+|.++ .+|+|+|||++||||+|.+ |. .|+||||||| +|+++++||||++|++||
T Consensus 199 GG~HA~n~l~iQEFmI~P~ga~g~s~~ealr~~~evyh~L~~------~~-~t~vGDEGGfaap~~~~~eeAL~li~eAi 271 (518)
T PTZ00378 199 PGNPSTARLALKSVLFSPVMPSGTVLRERMQKIFAAFHHFCQ------SH-NSSVRSDGSLHWDGFANLTDAVKLATEAL 271 (518)
T ss_pred CccCCCCCCCceEEEEeeCCCCCCCHHHHHHHHHHHHHHHhh------cc-cCccCCCcCcCCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999988 9999999999999999943 44 6999999999 688999999999999999
Q ss_pred HHcccc--cceEEEeecccccc------------ccC---C---ceeeecCCCCCCCCCccCHHHHHHHHHHHHhcCC--
Q psy12655 232 EKAGYT--GKVEIGMDVAASEF------------FKE---G---QYDLDFKNPNSDKSQWLPADKLTALYQEFIKEYP-- 289 (299)
Q Consensus 232 ~~ag~~--~~i~ialD~AAse~------------~~~---g---~Y~~~fk~~~~~~~~~~t~~elid~y~~l~~~yP-- 289 (299)
+++||+ .+|+|||||||||| |++ + +|.|. + + ...+|++||+|||++|+++||
T Consensus 272 ~~aGy~pG~dI~iglD~AASef~~~~~~~~~~~~y~~~k~~~e~~Y~l~-~----~-~~~~t~~elieyy~~li~kYP~i 345 (518)
T PTZ00378 272 RAVQLTPGTDVCLGLRMAASTTRVPATAVADGGAWKEAKDDCEVLYSLF-P----G-EPDVTGDQLSEYVREQLQAVPDI 345 (518)
T ss_pred HHhCCCCCCeEEEEEecccccccccccccccchhhccccCCCceeeeec-C----C-CCCCCHHHHHHHHHHHHHHCCCc
Confidence 999999 47999999999999 976 3 57772 2 1 245899999999999999999
Q ss_pred eeEeecCCCC
Q psy12655 290 IVSIEDPMLR 299 (299)
Q Consensus 290 IvsiEDp~~e 299 (299)
|+||||||+|
T Consensus 346 IvsIEDp~~E 355 (518)
T PTZ00378 346 VVYVEDTHCD 355 (518)
T ss_pred eEEEecCCCc
Confidence 9999999997
No 6
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=100.00 E-value=1.3e-83 Score=629.03 Aligned_cols=285 Identities=65% Similarity=0.970 Sum_probs=271.9
Q ss_pred eEEEeEEeCCCCCeeEEEEEEECCCce-EEEeecCCCCcceeeeeeccCCcccccCccHHHHHHHHHHhHHHHHhcCCCC
Q psy12655 5 KIHARQIFDSRGNPTVEVDLTTELGLF-RAAVPSGASTGIYEALELRDNDKAHYHGKGVTKAVGFINNDIAPALLKESFE 83 (299)
Q Consensus 5 ~v~ar~ilDsrG~pTvevev~~~~g~~-ra~~psGaS~G~~Ea~elrd~~~~~~~Gkgv~~Av~~in~~i~p~Li~~g~~ 83 (299)
+|++||||||||||||||+|+|++|.+ ||+||||||||+|||+|+||+|+.+|.|+||.+||++||+.|+|+|+ |+|
T Consensus 1 ~v~~r~i~dsrg~ptvev~v~~~~g~~g~a~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~~i~~~iap~Li--G~d 78 (408)
T cd03313 1 KIKAREILDSRGNPTVEVEVTTEDGGVGRAAVPSGASTGEHEAVELRDGDKSRYLGKGVLKAVKNVNEIIAPALI--GMD 78 (408)
T ss_pred CeEEEEEecCCCCceEEEEEEECCCCEEEEeecCCCCCCcceeeecCCCCcccccCCcHHHHHHHHHHHHHHHHc--CCC
Confidence 589999999999999999999999987 99999999999999999999999999999999999999999999999 899
Q ss_pred ccchHHHHHHHHhhcCCCCcccCCChhhHHHHHHHHHHHHHhcCCchHHHHHhhhCCCccccccceEEeecCCcCCCCcc
Q psy12655 84 VTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLYKHLADLAGNSNIILPVPAFNVINGGSHAGNKL 163 (299)
Q Consensus 84 ~~dQ~~ID~~L~~lDgT~nks~lGaNailavSlA~akAaA~~~~~pLy~yi~~l~g~~~~~lP~P~~nvinGG~ha~~~l 163 (299)
+.||++||++|+++|||+||+++|+||++|||||+|+|+|+.+|+|||+||+ |....+||+|++||||||+|+++++
T Consensus 79 ~~dq~~id~~l~~~dgt~~~~~~G~nAi~avsiAl~da~A~~~g~PLy~~Lg---g~~~~~lpvp~~nvi~GG~ha~~~~ 155 (408)
T cd03313 79 VTDQRAIDKLLIELDGTPNKSKLGANAILGVSLAVAKAAAAALGLPLYRYLG---GLAAYVLPVPMFNVINGGAHAGNKL 155 (408)
T ss_pred hhhHHHHHHHHHHhcCCCcccccchHHHHHHHHHHHHHHHHHcCCcHHHHhc---CCCCcccceeeEEEecCcccccCcc
Confidence 9999999999999999999999999999999999999999999999999999 7666789999999999999999999
Q ss_pred cceeEEEEecCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCCCCCcCCCCCChHHHHHHHHHHHHHccccc--ceE
Q psy12655 164 AMQEFMILPTGASSFSEAMKIGSEVYHHLKKVINTKFGLDATAVGDEGGFAPNILDNKEGLRLIVEAIEKAGYTG--KVE 241 (299)
Q Consensus 164 ~iQEfmiiP~ga~s~~eal~~~~ev~~~l~~~l~~k~G~~~t~vgdeGgfap~~~~~e~aL~ll~eAi~~ag~~~--~i~ 241 (299)
+||||||+|.++.+|.|+++|+.++||+||++|+++.|..++++||||||+|++++.+++|+++++||+++||+. ||.
T Consensus 156 ~iqe~~i~p~~~~~~~ea~~~~~~~~~~lK~~l~~~~g~~~~~vgdeGg~~p~~~~d~~~l~~i~eAi~~~g~~~G~dv~ 235 (408)
T cd03313 156 DFQEFMIVPVGAPSFSEALRMGAEVYHTLKKVLKKKGGLLATNVGDEGGFAPNLSSNEEALDLLVEAIEKAGYEPGKKIA 235 (408)
T ss_pred ccccccccccCccCHHHHHHHHHHHHHHHHHHHHhhcCccccccccccCcCCCCCChHHHHHHHHHHHHHhcCCCCCeEE
Confidence 999999999999999999999999999999999988776689999999999999999999999999999999993 899
Q ss_pred EEeeccccccccCCceeeecCCCCCCCCCccCHHHHHHHHHHHHhcCCeeEeecCCCC
Q psy12655 242 IGMDVAASEFFKEGQYDLDFKNPNSDKSQWLPADKLTALYQEFIKEYPIVSIEDPMLR 299 (299)
Q Consensus 242 ialD~AAse~~~~g~Y~~~fk~~~~~~~~~~t~~elid~y~~l~~~yPIvsiEDp~~e 299 (299)
|+||+|||+||++++|.|.+ ..++.+|++|+++||.+|+++|||.+|||||++
T Consensus 236 i~lD~aas~~~~~~~y~~~~-----~~~~~~t~~eai~~~~~l~e~~~i~~iEdPl~~ 288 (408)
T cd03313 236 IALDVAASEFYDEGKYVYDS-----DEGKKLTSEELIDYYKELVKKYPIVSIEDPFDE 288 (408)
T ss_pred EEEehhhhhhcccCcceecc-----CCCcccCHHHHHHHHHHHHHhCCcEEEEeCCCC
Confidence 99999999999999999841 124678999999999999999999999999974
No 7
>PRK00077 eno enolase; Provisional
Probab=100.00 E-value=1.2e-81 Score=617.98 Aligned_cols=284 Identities=59% Similarity=0.929 Sum_probs=272.0
Q ss_pred CceeeEEEeEEeCCCCCeeEEEEEEECCCce-EEEeecCCCCcceeeeeeccCCcccccCccHHHHHHHHHHhHHHHHhc
Q psy12655 1 MPISKIHARQIFDSRGNPTVEVDLTTELGLF-RAAVPSGASTGIYEALELRDNDKAHYHGKGVTKAVGFINNDIAPALLK 79 (299)
Q Consensus 1 ~~I~~v~ar~ilDsrG~pTvevev~~~~g~~-ra~~psGaS~G~~Ea~elrd~~~~~~~Gkgv~~Av~~in~~i~p~Li~ 79 (299)
|+|++|++|+||||||||||||+|+|++|.+ ||+||||||||+|||+|+||+|+.+|+||||.+||++||+.|+|+|+
T Consensus 2 ~~I~~v~~r~i~dsrg~ptvev~v~~~~g~~g~a~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~~v~~~iap~Li- 80 (425)
T PRK00077 2 SKIEDIIAREILDSRGNPTVEVEVTLEDGAFGRAAVPSGASTGEREAVELRDGDKSRYLGKGVLKAVENVNEEIAPALI- 80 (425)
T ss_pred CeEEEEEEEEEEcCCCCeEEEEEEEECCCCEEEEEEeccCCCCcceeeecCCCCccccCCcCHHHHHHHHHHHHHHHHc-
Confidence 4699999999999999999999999999987 99999999999999999999999999999999999999999999999
Q ss_pred CCCCccchHHHHHHHHhhcCCCCcccCCChhhHHHHHHHHHHHHHhcCCchHHHHHhhhCCCccccccceEEeecCCcCC
Q psy12655 80 ESFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLYKHLADLAGNSNIILPVPAFNVINGGSHA 159 (299)
Q Consensus 80 ~g~~~~dQ~~ID~~L~~lDgT~nks~lGaNailavSlA~akAaA~~~~~pLy~yi~~l~g~~~~~lP~P~~nvinGG~ha 159 (299)
|+|+.||++||+.|.++|||+|++++|+|||+|||||+|+|+|+.+|+|||+||+ |....++|+|++|+||||+|+
T Consensus 81 -G~d~~d~~~id~~l~~ldgt~~~~~~G~nAi~avsiAl~da~ak~~g~PLy~lLG---G~~~~~~pvp~~n~i~GG~ha 156 (425)
T PRK00077 81 -GLDALDQRAIDKAMIELDGTPNKSKLGANAILGVSLAVAKAAADSLGLPLYRYLG---GPNAKVLPVPMMNIINGGAHA 156 (425)
T ss_pred -CCChhhHHHHHHHHHHhhCccccCccchHHHHHHHHHHHHHHHHHhCCcHHHHhC---CCCcccccceeEEEEcccccc
Confidence 8999999999999999999999999999999999999999999999999999998 755567999999999999999
Q ss_pred CCcccceeEEEEecCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCCCCCcCCCCCChHHHHHHHHHHHHHcccc--
Q psy12655 160 GNKLAMQEFMILPTGASSFSEAMKIGSEVYHHLKKVINTKFGLDATAVGDEGGFAPNILDNKEGLRLIVEAIEKAGYT-- 237 (299)
Q Consensus 160 ~~~l~iQEfmiiP~ga~s~~eal~~~~ev~~~l~~~l~~k~G~~~t~vgdeGgfap~~~~~e~aL~ll~eAi~~ag~~-- 237 (299)
+++++||||||+|.++.+|+|+++++.++|+++|++|+++ |. .+++||||||+|++++++++|++|++||+++||+
T Consensus 157 ~~~~~~qe~~i~p~~~~~~~ea~~~~~~~~~~lK~~l~~~-g~-~~~vGdeGg~~p~~~~~~e~l~~lreAi~~ag~~~G 234 (425)
T PRK00077 157 DNNVDIQEFMIMPVGAPSFKEALRMGAEVFHTLKKVLKEK-GL-STAVGDEGGFAPNLKSNEEALDLILEAIEKAGYKPG 234 (425)
T ss_pred cCchhhhHhhcCCcccCCHHHHHHHHHHHHHHHHHHHHhc-CC-CCcCCCcCCcCCCccchHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999999999999976 75 6899999999999999999999999999999999
Q ss_pred cceEEEeeccccccccCCceeeecCCCCCCCCCccCHHHHHHHHHHHHhcCCeeEeecCCCC
Q psy12655 238 GKVEIGMDVAASEFFKEGQYDLDFKNPNSDKSQWLPADKLTALYQEFIKEYPIVSIEDPMLR 299 (299)
Q Consensus 238 ~~i~ialD~AAse~~~~g~Y~~~fk~~~~~~~~~~t~~elid~y~~l~~~yPIvsiEDp~~e 299 (299)
++|.|+||||||+||++++|+++ +..+|++|++++|.+|+++|||++|||||++
T Consensus 235 ~di~l~lD~aas~~~~~~~y~~~--------~~~~s~~e~~~~~~~l~e~y~i~~iEdPl~~ 288 (425)
T PRK00077 235 EDIALALDCAASEFYKDGKYVLE--------GEGLTSEEMIDYLAELVDKYPIVSIEDGLDE 288 (425)
T ss_pred CceEEEEehhhhhcccCCeeecc--------CCcCCHHHHHHHHHHHHhhCCcEEEEcCCCC
Confidence 47999999999999999999983 2358999999999999999999999999974
No 8
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=100.00 E-value=2.3e-80 Score=608.94 Aligned_cols=284 Identities=58% Similarity=0.937 Sum_probs=271.0
Q ss_pred eeeEEEeEEeCCCCCeeEEEEEEECCCce-EEEeecCCCCcceeeeeeccCCcccccCccHHHHHHHHHHhHHHHHhcCC
Q psy12655 3 ISKIHARQIFDSRGNPTVEVDLTTELGLF-RAAVPSGASTGIYEALELRDNDKAHYHGKGVTKAVGFINNDIAPALLKES 81 (299)
Q Consensus 3 I~~v~ar~ilDsrG~pTvevev~~~~g~~-ra~~psGaS~G~~Ea~elrd~~~~~~~Gkgv~~Av~~in~~i~p~Li~~g 81 (299)
|++|++||||||||||||||||+|++|.+ ||+||||||||+|||+|+||+|+++|+||||.+||++||+.|+|+|+ |
T Consensus 1 i~~i~~r~i~dsrg~ptvev~v~~~~g~~g~~~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~~i~~~iap~Li--G 78 (425)
T TIGR01060 1 IKDIRAREILDSRGNPTVEVEVILEDGTFGRAAVPSGASTGEREALELRDGDKKRYLGKGVLKAVENVNDIIAPALI--G 78 (425)
T ss_pred CcEEEEEEEecCCCCceEEEEEEECCCCEEEEeccCCCCCCcceeeeccCCCccccCCcCHHHHHHHHHHHHHHHHc--C
Confidence 78999999999999999999999999987 99999999999999999999999999999999999999999999999 7
Q ss_pred CCccchHHHHHHHHhhcCCCCcccCCChhhHHHHHHHHHHHHHhcCCchHHHHHhhhCCCccccccceEEeecCCcCCCC
Q psy12655 82 FEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLYKHLADLAGNSNIILPVPAFNVINGGSHAGN 161 (299)
Q Consensus 82 ~~~~dQ~~ID~~L~~lDgT~nks~lGaNailavSlA~akAaA~~~~~pLy~yi~~l~g~~~~~lP~P~~nvinGG~ha~~ 161 (299)
+||.||++||+.|.++|+|+|++++|+||++|||||+|+|+|+.+|+|||+||+ |....+||+|++|+||||+|+++
T Consensus 79 ~d~~d~~~id~~l~~~d~t~~~~~~G~nAi~avs~Al~da~ak~~g~Ply~lLG---G~~~~~lPvp~~n~i~GG~~a~~ 155 (425)
T TIGR01060 79 MDAFDQREIDQIMIELDGTPNKSKLGANAILGVSMAVAKAAAKSLGLPLYRYLG---GKNAYVLPVPMMNIINGGAHADN 155 (425)
T ss_pred CCHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHhCCcHHHHhC---CCCCCceeeEEEEeecccccccC
Confidence 999999999999999999999999999999999999999999999999999998 76567899999999999999999
Q ss_pred cccceeEEEEecCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCCCCCcCCCCCChHHHHHHHHHHHHHcccc--cc
Q psy12655 162 KLAMQEFMILPTGASSFSEAMKIGSEVYHHLKKVINTKFGLDATAVGDEGGFAPNILDNKEGLRLIVEAIEKAGYT--GK 239 (299)
Q Consensus 162 ~l~iQEfmiiP~ga~s~~eal~~~~ev~~~l~~~l~~k~G~~~t~vgdeGgfap~~~~~e~aL~ll~eAi~~ag~~--~~ 239 (299)
++++|||||+|.++.+|.|++++++++|++||++|++| |. .+++||||||+|++++++++|+++.+||+++||+ ++
T Consensus 156 ~~~~qe~~i~p~~a~~~~e~~~~~~~g~~~lK~~l~~~-~~-~~~vGdeGg~~p~~~~~~~~l~~~~~ai~~~~~~~G~d 233 (425)
T TIGR01060 156 NLDFQEFMIMPVGAKSFREALRMGAEVFHALKKLLKEK-GL-ATGVGDEGGFAPNLASNEEALEIISEAIEKAGYKPGED 233 (425)
T ss_pred ccCHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhc-CC-CCCCCcccccCCCccccHHHHHHHHHHHHHHhhccCCc
Confidence 99999999999999999999999999999999999866 75 6899999999999999999999999999999999 57
Q ss_pred eEEEeecccccccc--CCceeeecCCCCCCCCCccCHHHHHHHHHHHHhcCCeeEeecCCCC
Q psy12655 240 VEIGMDVAASEFFK--EGQYDLDFKNPNSDKSQWLPADKLTALYQEFIKEYPIVSIEDPMLR 299 (299)
Q Consensus 240 i~ialD~AAse~~~--~g~Y~~~fk~~~~~~~~~~t~~elid~y~~l~~~yPIvsiEDp~~e 299 (299)
+.|+||||||+||+ +++|++. ..++.+|++|++++|.+|+++|||++|||||++
T Consensus 234 i~l~lD~aas~~~~~~~~~y~~~------~~~~~~s~~eai~~~~~lle~~~i~~iEdPl~~ 289 (425)
T TIGR01060 234 VALALDCAASEFYDEEDGKYVYK------GENKQLTSEEMIEYYKELVEKYPIVSIEDGLSE 289 (425)
T ss_pred eEEEEEccccccccccCceeeec------CcccccCHHHHHHHHHHHHhcCCcEEEEcCCCc
Confidence 99999999999998 7899993 334568999999999999999999999999974
No 9
>PRK08350 hypothetical protein; Provisional
Probab=100.00 E-value=5.1e-74 Score=540.96 Aligned_cols=217 Identities=31% Similarity=0.489 Sum_probs=203.6
Q ss_pred ceeeEEEeEEeCCCCCeeEEEEEEECCCceEEEeecCCCCcceeeeeeccCCcccccCccHHHHHHHHHHhHHHHHhcCC
Q psy12655 2 PISKIHARQIFDSRGNPTVEVDLTTELGLFRAAVPSGASTGIYEALELRDNDKAHYHGKGVTKAVGFINNDIAPALLKES 81 (299)
Q Consensus 2 ~I~~v~ar~ilDsrG~pTvevev~~~~g~~ra~~psGaS~G~~Ea~elrd~~~~~~~Gkgv~~Av~~in~~i~p~Li~~g 81 (299)
+|.+|+|||||||||||||||||+|++|+.||+||| |+|+.||+ |||.+||++||+.|+|+|+ |
T Consensus 3 ~I~~i~aReIlDSRGnPTVEveV~~~~g~gra~vPS-------------D~d~~ry~-~gV~~AV~nVn~~Iap~Li--G 66 (341)
T PRK08350 3 VIENIIGRVAVLRGGKYSVEVDVITDSGFGRFAAPI-------------DENPSLYI-AEAHRAVSEVDEIIGPELI--G 66 (341)
T ss_pred eeEEEEEEEEEcCCCCceEEEEEEECCcEEEEEecC-------------CCCccccc-chHHHHHHHHHHHHHHHHc--C
Confidence 599999999999999999999999999944999999 67777999 9999999999999999999 8
Q ss_pred CCccchHHHHHHHHhhcCCCCcccCCChhhHHHHHHHHHHHHHhcCCchHHHHHhhhCCCccccccceEEeecCCcCCCC
Q psy12655 82 FEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLYKHLADLAGNSNIILPVPAFNVINGGSHAGN 161 (299)
Q Consensus 82 ~~~~dQ~~ID~~L~~lDgT~nks~lGaNailavSlA~akAaA~~~~~pLy~yi~~l~g~~~~~lP~P~~nvinGG~ha~~ 161 (299)
++++||++||++|++||||+|||+||+|||||||||+|||||+++++|||+||+ |.....||+|||||||||
T Consensus 67 ~d~~dQ~~ID~~mielDGT~nKs~lGaNAiLavS~A~akAaA~~~~~PLy~ylg---g~~~~~lPvP~~NiiNGG----- 138 (341)
T PRK08350 67 FDASEQELIDSYLWEIDGTEDFSHIGANTALAVSVAVAKAAANSKNMPLYSYIG---GTFTTELPVPILEFAEDE----- 138 (341)
T ss_pred CCHHHHHHHHHHHHhccCCccccccCchhhHHHHHHHHHHHHHHcCCcHHHHhc---CCCCCccCccceeeecCC-----
Confidence 999999999999999999999999999999999999999999999999999998 655678999999999999
Q ss_pred cccceeEEEEecCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCCCCCcCCCCCChHHHHHHHHHHHHHcccc--cc
Q psy12655 162 KLAMQEFMILPTGASSFSEAMKIGSEVYHHLKKVINTKFGLDATAVGDEGGFAPNILDNKEGLRLIVEAIEKAGYT--GK 239 (299)
Q Consensus 162 ~l~iQEfmiiP~ga~s~~eal~~~~ev~~~l~~~l~~k~G~~~t~vgdeGgfap~~~~~e~aL~ll~eAi~~ag~~--~~ 239 (299)
+| ||||+| .|++| ++||||+||++|++ ++++||++|.+||++|||+ .|
T Consensus 139 --~~-EFmI~p------~ea~~-~~ev~~~lk~il~~--------------------~~eeaL~ll~eAi~~aGy~~g~d 188 (341)
T PRK08350 139 --NF-EYYVLV------RDLME-ITDVVDAVNKILEN--------------------SKEVSLEGLSKASEKAGDELGLE 188 (341)
T ss_pred --ce-EEEECc------hHhhh-hHHHHHHHHHHHhh--------------------ChHHHHHHHHHHHHHhCCCcccc
Confidence 45 999999 79999 79999999999984 7899999999999999999 47
Q ss_pred eEEEeeccccccccCCceeeecCCCCCCCCCccCHHHHHHHHHHHHhcCCeeEeecCCCC
Q psy12655 240 VEIGMDVAASEFFKEGQYDLDFKNPNSDKSQWLPADKLTALYQEFIKEYPIVSIEDPMLR 299 (299)
Q Consensus 240 i~ialD~AAse~~~~g~Y~~~fk~~~~~~~~~~t~~elid~y~~l~~~yPIvsiEDp~~e 299 (299)
|.+|+|| + +.+|++||+ +|+++|||+||| ||+|
T Consensus 189 v~~~lD~---------~-------------~~~t~~eli----~l~~kYPIvsIE-p~~E 221 (341)
T PRK08350 189 VALGIAQ---------K-------------REMETEKVL----NLVEDNNIAYIK-PIGD 221 (341)
T ss_pred EEEeecc---------C-------------CCCCHHHHH----HHHHHCCEEEEE-cCCc
Confidence 9999999 1 126899999 999999999999 9997
No 10
>PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E ....
Probab=100.00 E-value=2.6e-55 Score=412.32 Aligned_cols=157 Identities=61% Similarity=1.003 Sum_probs=140.2
Q ss_pred cccccceEEeecCCcCCCCcccceeEEEEecCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCCCCCcCCCCCChHH
Q psy12655 143 IILPVPAFNVINGGSHAGNKLAMQEFMILPTGASSFSEAMKIGSEVYHHLKKVINTKFGLDATAVGDEGGFAPNILDNKE 222 (299)
Q Consensus 143 ~~lP~P~~nvinGG~ha~~~l~iQEfmiiP~ga~s~~eal~~~~ev~~~l~~~l~~k~G~~~t~vgdeGgfap~~~~~e~ 222 (299)
++||+|||||||||+||+|+|+||||||+|.|+.||+|+|||++||||+|+++|++|+|...|+|||||||+|+++++|+
T Consensus 2 ~~lPvP~~nvinGG~ha~~~l~~QEfmI~P~ga~s~~eal~~~~eVy~~Lk~il~~k~G~~~t~vgDeGGfaP~~~~~ee 81 (295)
T PF00113_consen 2 YTLPVPMFNVINGGKHAGNKLDFQEFMIVPVGADSFSEALRMGAEVYHALKKILKKKGGKFATNVGDEGGFAPNIDDNEE 81 (295)
T ss_dssp EEE-EEEEEEEE-GGGSSSSCSSSEEEEEETT-SSHHHHHHHHHHHHHHHHHHHHHHH-GGGGSBETTSSB--SBSSHHH
T ss_pred cccCcceEEEEcCccCCCCcccceEEEEEeccCCCHHHHHHhhhHHHHHHHHHHhhcccccccccCcccccCCCCcchhH
Confidence 68999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred HHHHHHHHHHHcccccceEEEeeccccccc--cCCceeeecCCCCCCCCCccCHHHHHHHHHHHHhcCCeeEeecCCCC
Q psy12655 223 GLRLIVEAIEKAGYTGKVEIGMDVAASEFF--KEGQYDLDFKNPNSDKSQWLPADKLTALYQEFIKEYPIVSIEDPMLR 299 (299)
Q Consensus 223 aL~ll~eAi~~ag~~~~i~ialD~AAse~~--~~g~Y~~~fk~~~~~~~~~~t~~elid~y~~l~~~yPIvsiEDp~~e 299 (299)
||++|++||+++||+.+|.||||||||||| ++|+|++.++++.+++++.+|++||+|||.+|+++|||+||||||+|
T Consensus 82 aL~ll~~Ai~~aGy~~~v~ialD~AAsefyd~~~gkY~~~~~~~~~~~~~~~s~delid~y~~li~~YPIvsIEDpf~e 160 (295)
T PF00113_consen 82 ALDLLMEAIKEAGYEPDVAIALDVAASEFYDEEDGKYDLEFKSKEKDPSRYKSSDELIDYYKDLIKKYPIVSIEDPFDE 160 (295)
T ss_dssp HHHHHHHHHHHTT-TTTBEEEEE--GGGGEETETTEEETTTTSSSSTGGGEEEHHHHHHHHHHHHHHS-EEEEESSS-T
T ss_pred HHHHHHHHHHHccccceeeeeccccHHHhhhccCCeEEEeecccccccccccCHHHHHHHHHHHHHhcCeEEEEccccc
Confidence 999999999999999999999999999999 67999998877555667789999999999999999999999999997
No 11
>PF03952 Enolase_N: Enolase, N-terminal domain; InterPro: IPR020811 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3OTR_F 3QTP_A 1PDY_A 1PDZ_A 3TQP_B 2PTZ_A 2PTW_A ....
Probab=100.00 E-value=1.1e-54 Score=365.05 Aligned_cols=131 Identities=63% Similarity=0.907 Sum_probs=115.6
Q ss_pred ceeeEEEeEEeCCCCCeeEEEEEEECCCce-EEEeecCCCCcceeeeeeccCCcccccCccHHHHHHHHHHhHHHHHhcC
Q psy12655 2 PISKIHARQIFDSRGNPTVEVDLTTELGLF-RAAVPSGASTGIYEALELRDNDKAHYHGKGVTKAVGFINNDIAPALLKE 80 (299)
Q Consensus 2 ~I~~v~ar~ilDsrG~pTvevev~~~~g~~-ra~~psGaS~G~~Ea~elrd~~~~~~~Gkgv~~Av~~in~~i~p~Li~~ 80 (299)
+|++|++||||||||+|||||||+|++|.+ |++||||+|||.|||+|+||++++||+||||.+||+|||+.|+|+|+
T Consensus 1 ~I~~v~~r~IlDsrG~PTVEveV~~~~g~~~ra~~PsGaStG~~Ea~elrD~~~~~~~gkgV~~Av~~vn~~i~~~L~-- 78 (132)
T PF03952_consen 1 TITKVKAREILDSRGNPTVEVEVFTSNGNVGRASVPSGASTGSHEAVELRDGDPERYGGKGVSKAVENVNEIIAPALI-- 78 (132)
T ss_dssp BEEEEEEEEEE-TTS-EEEEEEEEETTEEEEEEE--B-SSSSSSS-B---B-STTSGGGTBHHHHHHHHHHTHHHHHT--
T ss_pred CeEEEEEEEEEcCCCCceEEEEEEECCcccceeccccccCCCccccccccCCCcceecCcccchhhhhHHHHHHHHHH--
Confidence 599999999999999999999999999965 99999999999999999999999999999999999999999999999
Q ss_pred CCCccchHHHHHHHHhhcCCCCcccCCChhhHHHHHHHHHHHHHhcCCchHHHH
Q psy12655 81 SFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLYKHL 134 (299)
Q Consensus 81 g~~~~dQ~~ID~~L~~lDgT~nks~lGaNailavSlA~akAaA~~~~~pLy~yi 134 (299)
|++++||++||++|+++|||+||++||+|+++|||||+|||+|+++++|||+||
T Consensus 79 g~~~~dQ~~iD~~L~~lDgT~nk~~lGaNa~lavS~A~a~AaA~~~~~pL~~~l 132 (132)
T PF03952_consen 79 GLDPTDQEEIDQILIELDGTPNKSRLGANAILAVSLAVAKAAAAAKGIPLYRYL 132 (132)
T ss_dssp TSBTT-HHHHHHHHHHHHTSTTSTTT-HHHHHHHHHHHHHHHHHHHTS-HHHHH
T ss_pred hcchhhHHHhCccceeccCChhhhcccchHHHHHHHHHHHHHHHHcCCChhhcC
Confidence 799999999999999999999999999999999999999999999999999997
No 12
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=99.02 E-value=1.2e-07 Score=91.63 Aligned_cols=208 Identities=24% Similarity=0.299 Sum_probs=120.6
Q ss_pred CceeeEEEeEEe--------CCCC----CeeEEEEEEECCCce-EEEeecCCCCcceeeeeeccCCcccccCccHHHHHH
Q psy12655 1 MPISKIHARQIF--------DSRG----NPTVEVDLTTELGLF-RAAVPSGASTGIYEALELRDNDKAHYHGKGVTKAVG 67 (299)
Q Consensus 1 ~~I~~v~ar~il--------DsrG----~pTvevev~~~~g~~-ra~~psGaS~G~~Ea~elrd~~~~~~~Gkgv~~Av~ 67 (299)
|+|++|+.+.+= .+.| ..+|-|+|.|++|.. -|-+++ |.|..+..+..
T Consensus 1 ~~I~~v~~~~~~~pl~~~~~~~~~~~~~~~~v~V~v~t~~G~~G~Ge~~~-------------------~~~~~~~~~~~ 61 (355)
T cd03321 1 VLITGLRARAVNVPMQYPVHTSVGTVATAPLVLIDLATDEGVTGHSYLFT-------------------YTPAALKSLKQ 61 (355)
T ss_pred CeeEEEEEEEEEccCCCccccccceeccCcEEEEEEEECCCCeEEEeeec-------------------CCCCcHHHHHH
Confidence 678888887553 1233 256789999999874 443221 22323333333
Q ss_pred HHHHhHHHHHhcCCCCccchHHHHHHHHhhcC-CCCcccCCChhhHHHHHHHHHHHHHhcCCchHHHHHhhhCCCccccc
Q psy12655 68 FINNDIAPALLKESFEVTQQKEIDEFMIKLDG-TENKSKFGANAILGVSLAVAKAGAAKKGVPLYKHLADLAGNSNIILP 146 (299)
Q Consensus 68 ~in~~i~p~Li~~g~~~~dQ~~ID~~L~~lDg-T~nks~lGaNailavSlA~akAaA~~~~~pLy~yi~~l~g~~~~~lP 146 (299)
.++ .++|.|+ |.+. +...+.+.|...-. ..+ ..+...|+-|+.+|+.-+.++..|+|+|+.|+ |.. -+
T Consensus 62 ~~~-~l~p~Li--G~~~-~~~~~~~~~~~~~~~~~~-~~~~~~a~aaid~AlwDl~gk~~g~Pv~~LlG---g~~---~~ 130 (355)
T cd03321 62 LLD-DMAALLV--GEPL-APAELERALAKRFRLLGY-TGLVRMAAAGIDMAAWDALAKVHGLPLAKLLG---GNP---RP 130 (355)
T ss_pred HHH-HHHHHhC--CCCC-ChHHHHHHHHHHHHhhcC-CcHHHHHHHHHHHHHHHHHHHHcCCcHHHHhC---CCC---CC
Confidence 344 5999999 4554 44556655544310 001 01123578999999999999999999999998 642 24
Q ss_pred cceEEeecCCcCCCCcccceeEEEEecCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCCCCCcCCCCCChHHHHHH
Q psy12655 147 VPAFNVINGGSHAGNKLAMQEFMILPTGASSFSEAMKIGSEVYHHLKKVINTKFGLDATAVGDEGGFAPNILDNKEGLRL 226 (299)
Q Consensus 147 ~P~~nvinGG~ha~~~l~iQEfmiiP~ga~s~~eal~~~~ev~~~l~~~l~~k~G~~~t~vgdeGgfap~~~~~e~aL~l 226 (299)
+|+...++.+ .| ....+++.++..+=|+.+|= | +|. .++++.++.
T Consensus 131 v~~y~s~~~~--------------~~--~~~~~~a~~~~~~Gf~~~Ki----K-------vg~--------~~~~~d~~~ 175 (355)
T cd03321 131 VQAYDSHGLD--------------GA--KLATERAVTAAEEGFHAVKT----K-------IGY--------PTADEDLAV 175 (355)
T ss_pred eeEEEeCCCC--------------hH--HHHHHHHHHHHHhhhHHHhh----h-------cCC--------CChHhHHHH
Confidence 5655433111 01 11223333333333333331 2 221 233455555
Q ss_pred HHHHHHHcccccceEEEeeccccccccCCceeeecCCCCCCCCCccCHHHHHHHHHHHHhcCCeeEeecCCC
Q psy12655 227 IVEAIEKAGYTGKVEIGMDVAASEFFKEGQYDLDFKNPNSDKSQWLPADKLTALYQEFIKEYPIVSIEDPML 298 (299)
Q Consensus 227 l~eAi~~ag~~~~i~ialD~AAse~~~~g~Y~~~fk~~~~~~~~~~t~~elid~y~~l~~~yPIvsiEDp~~ 298 (299)
+...-+..| +++.|.+|+- ..+|.++-+.+.+.| ++|+|.+||+|+.
T Consensus 176 v~air~~~g--~~~~l~vDaN----------------------~~~~~~~A~~~~~~l-~~~~i~~iEeP~~ 222 (355)
T cd03321 176 VRSIRQAVG--DGVGLMVDYN----------------------QSLTVPEAIERGQAL-DQEGLTWIEEPTL 222 (355)
T ss_pred HHHHHHhhC--CCCEEEEeCC----------------------CCcCHHHHHHHHHHH-HcCCCCEEECCCC
Confidence 554444444 5789999961 125567878887777 6899999999984
No 13
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=98.93 E-value=1.5e-07 Score=90.47 Aligned_cols=110 Identities=21% Similarity=0.283 Sum_probs=76.9
Q ss_pred ceeeEEEeEEeCCCCCeeEEEEEEECCCceEEEeecCCCCcceeeeeeccCCcccccCccHHHHHHHHHHhHHHHHhcCC
Q psy12655 2 PISKIHARQIFDSRGNPTVEVDLTTELGLFRAAVPSGASTGIYEALELRDNDKAHYHGKGVTKAVGFINNDIAPALLKES 81 (299)
Q Consensus 2 ~I~~v~ar~ilDsrG~pTvevev~~~~g~~ra~~psGaS~G~~Ea~elrd~~~~~~~Gkgv~~Av~~in~~i~p~Li~~g 81 (299)
+|++|...- .+|=|+|+|++|.. |-.|+. . + ..++..+++.|+|.|+ |
T Consensus 1 kI~~i~~~~-------~~v~V~i~td~Gi~----------G~GE~~----~------~---~~~~~~i~~~l~p~li--G 48 (341)
T cd03327 1 KIKSVRTRV-------GWLFVEIETDDGTV----------GYANTT----G------G---PVACWIVDQHLARFLI--G 48 (341)
T ss_pred CeEEEEEEE-------EEEEEEEEECCCCe----------EEecCC----C------c---hHHHHHHHHHHHHHhC--C
Confidence 588888853 26889999999864 222220 0 0 1234567788999999 7
Q ss_pred CCccchHHHHHHHHhhcCCCCcccCCChhhHHHHHHHHHHHHHhcCCchHHHHHhhhCCCccccc
Q psy12655 82 FEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLYKHLADLAGNSNIILP 146 (299)
Q Consensus 82 ~~~~dQ~~ID~~L~~lDgT~nks~lGaNailavSlA~akAaA~~~~~pLy~yi~~l~g~~~~~lP 146 (299)
.|+.+...+.+.|.........+.+...|+.|+.+|+.-+.++..|+|+|++|+ |....++|
T Consensus 49 ~dp~~~~~~~~~l~~~~~~~~~~~~~~~a~said~AlwDl~gK~~g~Pv~~LLG---G~~r~~i~ 110 (341)
T cd03327 49 KDPSDIEKLWDQMYRATLAYGRKGIAMAAISAVDLALWDLLGKIRGEPVYKLLG---GRTRDKIP 110 (341)
T ss_pred CCchHHHHHHHHHHhhccccCCccHHHhHHHHHHHHHHHhcccccCCCHHHHcC---CCcCCceE
Confidence 899999999888865432111122334689999999999999999999999998 65333444
No 14
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=98.77 E-value=1e-06 Score=87.10 Aligned_cols=215 Identities=20% Similarity=0.247 Sum_probs=121.4
Q ss_pred eEEEEEEECCCce-EEEeecCCCCcceeeeeeccCCcccccCccHHHHHHHHHHhHHHHHhcCCCCccchHHHHHHHHhh
Q psy12655 19 TVEVDLTTELGLF-RAAVPSGASTGIYEALELRDNDKAHYHGKGVTKAVGFINNDIAPALLKESFEVTQQKEIDEFMIKL 97 (299)
Q Consensus 19 Tvevev~~~~g~~-ra~~psGaS~G~~Ea~elrd~~~~~~~Gkgv~~Av~~in~~i~p~Li~~g~~~~dQ~~ID~~L~~l 97 (299)
+|-|+|.|++|.. .|-+++-.=+|.+ -||+ .|. ....+..|++.|+|.|+ |.|+++.+++-+.|...
T Consensus 51 ~vlV~i~tddG~~G~GE~~~~~ysg~~----g~~~---~~~---~~~~~~~i~~~laP~Li--G~d~~~~~~l~~~~~~~ 118 (408)
T TIGR01502 51 SLSVLLVLEDGQVVHGDCAAVQYSGAG----GRDP---LFL---AKDFIPVIEKEVAPKLI--GRDITNFKDMAEVFEKM 118 (408)
T ss_pred EEEEEEEECCCCEEEEEeecceeccCc----cccc---ccc---HHHHHHHHHHHhhHHHc--CCCccCHHHHHHHHHHH
Confidence 6779999999975 4443320111100 0010 111 45566778888999999 78999988887777665
Q ss_pred cCCCCcccCCChhh-HHHHHHHHHHHHHhcCCchHHHHHhhhCCCccccccceEEeecCCcCCCCcccceeEEEEecCCC
Q psy12655 98 DGTENKSKFGANAI-LGVSLAVAKAGAAKKGVPLYKHLADLAGNSNIILPVPAFNVINGGSHAGNKLAMQEFMILPTGAS 176 (299)
Q Consensus 98 DgT~nks~lGaNai-lavSlA~akAaA~~~~~pLy~yi~~l~g~~~~~lP~P~~nvinGG~ha~~~l~iQEfmiiP~ga~ 176 (299)
-. +.. + ..++ .|+++|+.-+.|+..|+|||+.|+..+|.....-|+|....++- ....
T Consensus 119 ~~--~~~-~-~~a~kaavd~AL~D~~ak~~g~pl~~LLG~~~~~~~~~~~vp~~~s~g~-----------------~~~~ 177 (408)
T TIGR01502 119 TV--NRN-L-HTAIRYGVSQALLDAAAKTRKTTMAEVIRDEYNPGAETNAVPVFAQSGD-----------------DRYD 177 (408)
T ss_pred hh--cCc-c-hhHHHHHHHHHHHHHHHHHcCCcHHHHhCcccccCCcCCceeEEEEeec-----------------cCCC
Confidence 21 111 2 2466 99999999999999999999999832222222346666555421 0122
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhcCCCCc--ccCCCCCcCCCCCChHHHHHHHHHHHHHcc-cccceEEEeecccccccc
Q psy12655 177 SFSEAMKIGSEVYHHLKKVINTKFGLDAT--AVGDEGGFAPNILDNKEGLRLIVEAIEKAG-YTGKVEIGMDVAASEFFK 253 (299)
Q Consensus 177 s~~eal~~~~ev~~~l~~~l~~k~G~~~t--~vgdeGgfap~~~~~e~aL~ll~eAi~~ag-~~~~i~ialD~AAse~~~ 253 (299)
+..+.+..+.++..+ |.+.+ .+| +-+ ... .+-++-+.+.|++.+ ...++.|-+|+-.
T Consensus 178 ~~d~m~~~a~~~~~~---------G~~~~~KkvG----~~~-~k~-~~~~~~~~~ri~~lr~~g~~~~l~vDaN~----- 237 (408)
T TIGR01502 178 NVDKMILKEVDVLPH---------GLINSVEELG----LDG-EKL-LEYVKWLRDRIIKLGREGYAPIFHIDVYG----- 237 (408)
T ss_pred CHHHHHHHHHHHHhc---------cCccceeeec----CCH-HHh-hhhHHHHHHHHHHhhccCCCCeEEEEcCC-----
Confidence 333333333222211 21000 122 211 111 133455556666554 1124567777511
Q ss_pred CCceeeecCCCCCCCCCccCHHHHHHHHHHHHhc---CCeeEeecCCC
Q psy12655 254 EGQYDLDFKNPNSDKSQWLPADKLTALYQEFIKE---YPIVSIEDPML 298 (299)
Q Consensus 254 ~g~Y~~~fk~~~~~~~~~~t~~elid~y~~l~~~---yPIvsiEDp~~ 298 (299)
| + +.-.-+|.++.++|+..|-++ |++ +||+|++
T Consensus 238 ---~-~-------~~~~~~~~~~ai~~l~~l~~~~~~~~~-~iEqPv~ 273 (408)
T TIGR01502 238 ---T-I-------GEAFGVDIKAMADYIQTLAEAAKPFHL-RIEGPMD 273 (408)
T ss_pred ---C-c-------ccccCCCHHHHHHHHHHHHHhCccCCe-EEecCCC
Confidence 0 0 001235889999999999885 666 9999995
No 15
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=98.76 E-value=6.8e-07 Score=87.97 Aligned_cols=120 Identities=20% Similarity=0.318 Sum_probs=81.2
Q ss_pred CceeeEEEeEEeCCCCCeeEEEEEEECCCce-EEEeecCCCCcceeeeeeccCCcccccCccHHHHHHHHHHhHHHHHhc
Q psy12655 1 MPISKIHARQIFDSRGNPTVEVDLTTELGLF-RAAVPSGASTGIYEALELRDNDKAHYHGKGVTKAVGFINNDIAPALLK 79 (299)
Q Consensus 1 ~~I~~v~ar~ilDsrG~pTvevev~~~~g~~-ra~~psGaS~G~~Ea~elrd~~~~~~~Gkgv~~Av~~in~~i~p~Li~ 79 (299)
|+|++|+...+ ..+++.|=|+|+|++|.. -|-++. .|.. ......+.+.++|.|+
T Consensus 1 mkI~~v~~~~~--~~~~~~vlVri~td~G~~G~GE~~~--------------------~~~~-~~~~~~~~~~l~p~l~- 56 (404)
T PRK15072 1 MKIVDAEVIVT--CPGRNFVTLKITTDDGVTGLGDATL--------------------NGRE-LAVASYLQDHVCPLLI- 56 (404)
T ss_pred CeeEEEEEEEE--CCCCcEEEEEEEeCCCCeEEEeccc--------------------CCch-HHHHHHHHHHHHHHcC-
Confidence 89999999765 345678889999999974 333211 0001 1224456778999998
Q ss_pred CCCCccchHHHHHHHHhhcCCCCcccCCChhhHHHHHHHHHHHHHhcCCchHHHHHhhhCCCccccccceEE
Q psy12655 80 ESFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLYKHLADLAGNSNIILPVPAFN 151 (299)
Q Consensus 80 ~g~~~~dQ~~ID~~L~~lDgT~nks~lGaNailavSlA~akAaA~~~~~pLy~yi~~l~g~~~~~lP~P~~n 151 (299)
|.++.+-..|-+.|...- .-....+...++.|+.+|+.=+.|+..|+|||+.|+ |.. +-++|+.+
T Consensus 57 -G~d~~~~e~~~~~l~~~~-~~~~~~~~~~a~aaID~AlwDl~gK~~g~Pl~~LLG---G~~--r~~v~~y~ 121 (404)
T PRK15072 57 -GRDAHRIEDIWQYLYRGA-YWRRGPVTMSAIAAVDMALWDIKAKAAGMPLYQLLG---GAS--REGVMVYG 121 (404)
T ss_pred -CCChhHHHHHHHHHHHhc-ccCCchHHHHHHHHHHHHHHHHhhhhcCCcHHHHcC---CCc--cCceEEEE
Confidence 789988888877775421 000001122488999999999999999999999998 643 23444444
No 16
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=98.69 E-value=2.4e-06 Score=82.54 Aligned_cols=209 Identities=17% Similarity=0.197 Sum_probs=120.9
Q ss_pred ceeeEEEeEEeCCCCCeeEEEEEEECCCce-EEEeecCCCCcceeeeeeccCCcccccCccHHHHHHHHHHhHHHHHhcC
Q psy12655 2 PISKIHARQIFDSRGNPTVEVDLTTELGLF-RAAVPSGASTGIYEALELRDNDKAHYHGKGVTKAVGFINNDIAPALLKE 80 (299)
Q Consensus 2 ~I~~v~ar~ilDsrG~pTvevev~~~~g~~-ra~~psGaS~G~~Ea~elrd~~~~~~~Gkgv~~Av~~in~~i~p~Li~~ 80 (299)
+|++|..+.+ + .+.|=|+|.|++|.. .+-+..+ +. .......++. |+|.|+
T Consensus 1 ~I~~i~~~~~-~---~~~~~V~i~~~~G~~G~GE~~~~---~~------------------~~~~~~~~~~-l~p~l~-- 52 (352)
T cd03325 1 KITKIETFVV-P---PRWLFVKIETDEGVVGWGEPTVE---GK------------------ARTVEAAVQE-LEDYLI-- 52 (352)
T ss_pred CeEEEEEEEE-C---CCEEEEEEEECCCCEEEeccccC---Cc------------------chHHHHHHHH-HHHHhC--
Confidence 5888999876 3 357889999999975 4432110 10 0112233455 999998
Q ss_pred CCCccchHHHHHHHHhhcCCCCcccCCChhhHHHHHHHHHHHHHhcCCchHHHHHhhhCCCccccccceEEeecCCcCCC
Q psy12655 81 SFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLYKHLADLAGNSNIILPVPAFNVINGGSHAG 160 (299)
Q Consensus 81 g~~~~dQ~~ID~~L~~lDgT~nks~lGaNailavSlA~akAaA~~~~~pLy~yi~~l~g~~~~~lP~P~~nvinGG~ha~ 160 (299)
|.++.+...+=+.|.... ..........++.|+-+|+.=+.++..|+|+|+.|+ |.....+|+ ...+.
T Consensus 53 G~d~~~~~~~~~~~~~~~-~~~~~~~~~~a~aaid~Al~Dl~gk~~g~pv~~LLG---g~~~~~i~~--~~~~~------ 120 (352)
T cd03325 53 GKDPMNIEHHWQVMYRGG-FYRGGPVLMSAISGIDQALWDIKGKVLGVPVHQLLG---GQVRDRVRV--YSWIG------ 120 (352)
T ss_pred CCCHHHHHHHHHHHHHhc-CcCCcchhhhHHHHHHHHHHHHhhhhcCCcHHHHcC---CCccceeEE--EEeCC------
Confidence 788888776655553210 001111123478999999999999999999999998 643333443 22221
Q ss_pred CcccceeEEEEecCCCCHHHHHHHHHHHHHHHHHHHhhhcCC--CCcccCCCCCcCCCCCChHHHHHHHHHHHHHccccc
Q psy12655 161 NKLAMQEFMILPTGASSFSEAMKIGSEVYHHLKKVINTKFGL--DATAVGDEGGFAPNILDNKEGLRLIVEAIEKAGYTG 238 (299)
Q Consensus 161 ~~l~iQEfmiiP~ga~s~~eal~~~~ev~~~l~~~l~~k~G~--~~t~vgdeGgfap~~~~~e~aL~ll~eAi~~ag~~~ 238 (299)
..+..+..+ .+++... .|. +-..+|...++.+.-.++++-++.|...-+..| +
T Consensus 121 --------------~~~~~~~~~-------~~~~~~~--~Gf~~~KiKvg~~~~~~~~~~~~~~D~~~i~avr~~~g--~ 175 (352)
T cd03325 121 --------------GDRPSDVAE-------AARARRE--AGFTAVKMNATEELQWIDTSKKVDAAVERVAALREAVG--P 175 (352)
T ss_pred --------------CCCHHHHHH-------HHHHHHH--cCCCEEEecCCCCcccCCCHHHHHHHHHHHHHHHHhhC--C
Confidence 112322222 2233322 131 112344322232211234555666666655555 4
Q ss_pred ceEEEeeccccccccCCceeeecCCCCCCCCCccCHHHHHHHHHHHHhcCCeeEeecCCC
Q psy12655 239 KVEIGMDVAASEFFKEGQYDLDFKNPNSDKSQWLPADKLTALYQEFIKEYPIVSIEDPML 298 (299)
Q Consensus 239 ~i~ialD~AAse~~~~g~Y~~~fk~~~~~~~~~~t~~elid~y~~l~~~yPIvsiEDp~~ 298 (299)
++.|.+|+- ..+|.++-+++...| ++|+|.+||+|+.
T Consensus 176 ~~~l~vDaN----------------------~~~~~~~A~~~~~~l-~~~~i~~iEeP~~ 212 (352)
T cd03325 176 DIDIGVDFH----------------------GRVSKPMAKDLAKEL-EPYRLLFIEEPVL 212 (352)
T ss_pred CCEEEEECC----------------------CCCCHHHHHHHHHhc-cccCCcEEECCCC
Confidence 788999972 224566766665555 6799999999985
No 17
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=98.63 E-value=5.6e-06 Score=80.93 Aligned_cols=210 Identities=21% Similarity=0.211 Sum_probs=116.7
Q ss_pred eeEEEEEEECCCce-EEE-eecCCCCcceeeeeeccCCcccccCccH----HHHHHHHHHhHHHHHhcCCCCccchHHHH
Q psy12655 18 PTVEVDLTTELGLF-RAA-VPSGASTGIYEALELRDNDKAHYHGKGV----TKAVGFINNDIAPALLKESFEVTQQKEID 91 (299)
Q Consensus 18 pTvevev~~~~g~~-ra~-~psGaS~G~~Ea~elrd~~~~~~~Gkgv----~~Av~~in~~i~p~Li~~g~~~~dQ~~ID 91 (299)
..|=|+|.|++|.. -+- +|. .++|. .|.+. ..+...|++.|+|.|+ |.|+.|...|-
T Consensus 13 ~~vlV~I~tddG~~G~GEa~~~-~~~~~--------------~g~~~~~~~~~~~~~i~~~lap~Li--G~d~~~i~~i~ 75 (369)
T cd03314 13 EAISVMLVLEDGQVAVGDCAAV-QYSGA--------------GGRDPLFLAADFIPVIEKVIAPALV--GRDVANFRPAA 75 (369)
T ss_pred cEEEEEEEECCCCEEEEecccc-cccCc--------------CCcccccchHHHHHHHHHhhhhHhc--CCCHHHHHHHH
Confidence 34559999999975 443 222 12211 11111 2234567888999999 78999988887
Q ss_pred HHHHhhcCCCCcccCCChhhHHHHHHHHHHHHHhcCCchHHHHHhhhCC---CccccccceEEeecCCcCCCCcccceeE
Q psy12655 92 EFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLYKHLADLAGN---SNIILPVPAFNVINGGSHAGNKLAMQEF 168 (299)
Q Consensus 92 ~~L~~lDgT~nks~lGaNailavSlA~akAaA~~~~~pLy~yi~~l~g~---~~~~lP~P~~nvinGG~ha~~~l~iQEf 168 (299)
+.|...--..+ .....+..|+.+|+.=+.++..|+|||+.|+ |. ...+-|+|....+++. .
T Consensus 76 ~~m~~~~~~g~--~~~~aaksAIDiALwDl~gK~~g~Pv~~LLG---g~~~~g~~r~~v~~y~~~~~~----~------- 139 (369)
T cd03314 76 AVLDKMRLDGN--RLHTAIRYGVSQALLDAVALAQRRTMAEVLC---DEYGLPLADEPVPIFAQSGDD----R------- 139 (369)
T ss_pred HHHHHHhhcCC--cchhhHHHHHHHHHHHHHHHHhCCcHHHHcC---CcccCCCcccceEEEEEecCc----c-------
Confidence 77744210011 1111245899999999999999999999997 43 2345777777543211 0
Q ss_pred EEEecCCCCHHHHHHHHHHHHHH-HHHHHhhhcCCCCcccCCCCCcCCCCCChHHHHHHHHHHHHHcc-cccceEEEeec
Q psy12655 169 MILPTGASSFSEAMKIGSEVYHH-LKKVINTKFGLDATAVGDEGGFAPNILDNKEGLRLIVEAIEKAG-YTGKVEIGMDV 246 (299)
Q Consensus 169 miiP~ga~s~~eal~~~~ev~~~-l~~~l~~k~G~~~t~vgdeGgfap~~~~~e~aL~ll~eAi~~ag-~~~~i~ialD~ 246 (299)
.....+.++.+.++..+ .-+.++++ | |-+ ++. .+-++-..+.|+++. .-+++.|-+|+
T Consensus 140 ------~~~~~~~~~~~~~~~~~~~~~~~k~k-G-----------~~~-~K~-~~~~~~~~~~v~avr~~G~~~~l~vDa 199 (369)
T cd03314 140 ------YINVDKMILKGADVLPHALINNVEEK-G-----------PKG-EKL-LEYVKWLSDRIRKLGRPGYHPILHIDV 199 (369)
T ss_pred ------cccHHHHHHHHHhhhhhhhhhhHhhc-C-----------ccH-HHH-HHhHHHHHHHHHHHhhcCCCCEEEEEc
Confidence 12333333333222111 01112212 3 210 100 011222233333333 11568888886
Q ss_pred cccccccCCceeeecCCCCCCCCCcc--CHHHHHHHHHHHHhcCC--eeEeecCCC
Q psy12655 247 AASEFFKEGQYDLDFKNPNSDKSQWL--PADKLTALYQEFIKEYP--IVSIEDPML 298 (299)
Q Consensus 247 AAse~~~~g~Y~~~fk~~~~~~~~~~--t~~elid~y~~l~~~yP--IvsiEDp~~ 298 (299)
- . .| ++.+ |.++.+++...|-+.|+ +.+|||||.
T Consensus 200 N--~-----~w-----------~~~~~~~~~~A~~~~~~Le~~~~~~~~~iEqP~~ 237 (369)
T cd03314 200 Y--G-----TI-----------GQAFDPDPDRAADYLATLEEAAAPFPLRIEGPMD 237 (369)
T ss_pred C--C-----cc-----------ccccCCCHHHHHHHHHHHHHhcCCCcEEEecCCC
Confidence 1 1 00 1235 77899999999987655 789999995
No 18
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=98.61 E-value=6.6e-06 Score=79.16 Aligned_cols=95 Identities=24% Similarity=0.307 Sum_probs=71.1
Q ss_pred eeEEEEEEECCCce-EEEeecCCCCcceeeeeeccCCcccccCccHHHHHHHHHHhHHHHHhcCCCCccchHHHHHHHHh
Q psy12655 18 PTVEVDLTTELGLF-RAAVPSGASTGIYEALELRDNDKAHYHGKGVTKAVGFINNDIAPALLKESFEVTQQKEIDEFMIK 96 (299)
Q Consensus 18 pTvevev~~~~g~~-ra~~psGaS~G~~Ea~elrd~~~~~~~Gkgv~~Av~~in~~i~p~Li~~g~~~~dQ~~ID~~L~~ 96 (299)
..+=|+|.|++|.. -|-+.. .. ...|.|..+..++..+++.++|.|+ |.++.+..++.+.|..
T Consensus 25 ~~~~Vrv~t~~G~~G~GE~~~-----------~~---~~~~~~~~~~~~~~~i~~~~~p~l~--g~~~~~~~~~~~~~~~ 88 (354)
T cd03317 25 EFLIVELTDEEGITGYGEVVA-----------FE---GPFYTEETNATAWHILKDYLLPLLL--GREFSHPEEVSERLAP 88 (354)
T ss_pred eEEEEEEEECCCCeEEEecCC-----------CC---CCcccCCCHHHHHHHHHHHHHHHHc--CCCCCCHHHHHHHHHH
Confidence 34568888988864 332211 00 0135555666777888888999998 7899999999888866
Q ss_pred hcCCCCcccCCChhhHHHHHHHHHHHHHhcCCchHHHHH
Q psy12655 97 LDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLYKHLA 135 (299)
Q Consensus 97 lDgT~nks~lGaNailavSlA~akAaA~~~~~pLy~yi~ 135 (299)
+.+ ...++.|+.+|+.-+.++..|+|+|+.|+
T Consensus 89 ~~~-------~~~a~aaid~AlwDl~gk~~g~Pv~~LLG 120 (354)
T cd03317 89 IKG-------NNMAKAGLEMAVWDLYAKAQGQSLAQYLG 120 (354)
T ss_pred hcC-------ChHHHHHHHHHHHHHHHHHcCCCHHHHhC
Confidence 532 23589999999999999999999999998
No 19
>PRK14017 galactonate dehydratase; Provisional
Probab=98.54 E-value=1.2e-05 Score=78.47 Aligned_cols=209 Identities=16% Similarity=0.215 Sum_probs=118.7
Q ss_pred CceeeEEEeEEeCCCCCeeEEEEEEECCCce-EEEeecCCCCcceeeeeeccCCcccccCccHHHHHHHHHHhHHHHHhc
Q psy12655 1 MPISKIHARQIFDSRGNPTVEVDLTTELGLF-RAAVPSGASTGIYEALELRDNDKAHYHGKGVTKAVGFINNDIAPALLK 79 (299)
Q Consensus 1 ~~I~~v~ar~ilDsrG~pTvevev~~~~g~~-ra~~psGaS~G~~Ea~elrd~~~~~~~Gkgv~~Av~~in~~i~p~Li~ 79 (299)
|+|++|..+.+ +. .+|=|+|.|++|.. -|-++.+ +. .......++ .++|.|+
T Consensus 1 mkI~~i~~~~~-~~---~~vlV~v~t~dG~~G~GE~~~~---~~------------------~~~~~~~~~-~~~p~l~- 53 (382)
T PRK14017 1 MKITKLETFRV-PP---RWLFLKIETDEGIVGWGEPVVE---GR------------------ARTVEAAVH-ELADYLI- 53 (382)
T ss_pred CeEEEEEEEEE-CC---CEEEEEEEECCCCeEEeccccC---Cc------------------hHHHHHHHH-HHHHHhC-
Confidence 89999999877 32 24679999999864 3332211 10 011122334 5899998
Q ss_pred CCCCccchHHHHHHHHhhcCCCCcc-cCCChhhHHHHHHHHHHHHHhcCCchHHHHHhhhCCCccccccceEEeecCCcC
Q psy12655 80 ESFEVTQQKEIDEFMIKLDGTENKS-KFGANAILGVSLAVAKAGAAKKGVPLYKHLADLAGNSNIILPVPAFNVINGGSH 158 (299)
Q Consensus 80 ~g~~~~dQ~~ID~~L~~lDgT~nks-~lGaNailavSlA~akAaA~~~~~pLy~yi~~l~g~~~~~lP~P~~nvinGG~h 158 (299)
|.++.+...+-+.|... +-... .....|+-|+.||+.=+.|+..|+|||+.|+ |.....+ |+...+.
T Consensus 54 -G~d~~~~~~~~~~l~~~--~~~~~~~~~~~A~aaid~AlwDl~gK~~g~Pv~~LLG---g~~r~~i--~~~~~~~---- 121 (382)
T PRK14017 54 -GKDPRRIEDHWQVMYRG--GFYRGGPILMSAIAGIDQALWDIKGKALGVPVHELLG---GLVRDRI--RVYSWIG---- 121 (382)
T ss_pred -CCCHHHHHHHHHHHHHh--cccCCchHHhhHHHHHHHHHHHHhhhhcCCcHHHHcC---CCcccee--eEeEeCC----
Confidence 78888887776666431 10000 1112378999999999999999999999998 6432333 3332221
Q ss_pred CCCcccceeEEEEecCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCc--ccCCCCCcCCCCCChHHHHHHHHHHHHHccc
Q psy12655 159 AGNKLAMQEFMILPTGASSFSEAMKIGSEVYHHLKKVINTKFGLDAT--AVGDEGGFAPNILDNKEGLRLIVEAIEKAGY 236 (299)
Q Consensus 159 a~~~l~iQEfmiiP~ga~s~~eal~~~~ev~~~l~~~l~~k~G~~~t--~vgdeGgfap~~~~~e~aL~ll~eAi~~ag~ 236 (299)
..+..+.++.+ .+... .|-... .+|..-+....-.++++.++.|...-+..|
T Consensus 122 ----------------~~~~~~~~~~a-------~~~~~--~Gf~~~KiKv~~~~~~~~~~~~~~~d~~~i~avr~~~g- 175 (382)
T PRK14017 122 ----------------GDRPADVAEAA-------RARVE--RGFTAVKMNGTEELQYIDSPRKVDAAVARVAAVREAVG- 175 (382)
T ss_pred ----------------CCCHHHHHHHH-------HHHHH--cCCCEEEEcCcCCccccccHHHHHHHHHHHHHHHHHhC-
Confidence 11333332322 22222 142111 222100011111234555666666555555
Q ss_pred ccceEEEeeccccccccCCceeeecCCCCCCCCCccCHHHHHHHHHHHHhcCCeeEeecCCC
Q psy12655 237 TGKVEIGMDVAASEFFKEGQYDLDFKNPNSDKSQWLPADKLTALYQEFIKEYPIVSIEDPML 298 (299)
Q Consensus 237 ~~~i~ialD~AAse~~~~g~Y~~~fk~~~~~~~~~~t~~elid~y~~l~~~yPIvsiEDp~~ 298 (299)
+++.|.+|+- +.+|.++-+.+...| ++|++.+||+|+.
T Consensus 176 -~~~~l~vDaN----------------------~~w~~~~A~~~~~~l-~~~~~~~iEeP~~ 213 (382)
T PRK14017 176 -PEIGIGVDFH----------------------GRVHKPMAKVLAKEL-EPYRPMFIEEPVL 213 (382)
T ss_pred -CCCeEEEECC----------------------CCCCHHHHHHHHHhh-cccCCCeEECCCC
Confidence 4788999971 124556655555554 6799999999984
No 20
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=98.52 E-value=1.9e-05 Score=75.90 Aligned_cols=213 Identities=21% Similarity=0.223 Sum_probs=122.4
Q ss_pred ceeeEEEeEEeC--------CCCCeeEEEEEEECCCce-EEEeecCCCCcceeeeeeccCCcccccCccHHHHHHHHHHh
Q psy12655 2 PISKIHARQIFD--------SRGNPTVEVDLTTELGLF-RAAVPSGASTGIYEALELRDNDKAHYHGKGVTKAVGFINND 72 (299)
Q Consensus 2 ~I~~v~ar~ilD--------srG~pTvevev~~~~g~~-ra~~psGaS~G~~Ea~elrd~~~~~~~Gkgv~~Av~~in~~ 72 (299)
+|++|+...+=- -...+++=|+|.|++|.. .|-++...+ .......+++.
T Consensus 1 kI~~i~~~~~~~p~~~~~~~~~~~~~~~V~v~~~~G~~G~GE~~~~~~---------------------~~~~~~~l~~~ 59 (357)
T cd03316 1 KITDVETFVLRVPLPEPGGAVTWRNLVLVRVTTDDGITGWGEAYPGGR---------------------PSAVAAAIEDL 59 (357)
T ss_pred CeeEEEEEEEecCCcccccccccceEEEEEEEeCCCCEEEEeccCCCC---------------------chHHHHHHHHH
Confidence 466666665421 123467889999999875 444332100 12234556777
Q ss_pred HHHHHhcCCCCccchHHHHHHHHhhcCCCCc-ccCCChhhHHHHHHHHHHHHHhcCCchHHHHHhhhCCCccccccceEE
Q psy12655 73 IAPALLKESFEVTQQKEIDEFMIKLDGTENK-SKFGANAILGVSLAVAKAGAAKKGVPLYKHLADLAGNSNIILPVPAFN 151 (299)
Q Consensus 73 i~p~Li~~g~~~~dQ~~ID~~L~~lDgT~nk-s~lGaNailavSlA~akAaA~~~~~pLy~yi~~l~g~~~~~lP~P~~n 151 (299)
++|.|+ |.++.+..++-+.|...-- .+. ...-..+..|+.+|+.-+.++..|+|+|+.|+ |... -.+|+..
T Consensus 60 ~~p~l~--G~~~~~~~~~~~~l~~~~~-~~~~~~~~~~a~~aid~Al~Dl~gk~~g~pl~~llG---g~~~--~~v~~~~ 131 (357)
T cd03316 60 LAPLLI--GRDPLDIERLWEKLYRRLF-WRGRGGVAMAAISAVDIALWDIKGKAAGVPVYKLLG---GKVR--DRVRVYA 131 (357)
T ss_pred HHHHcc--CCChHHHHHHHHHHHHhcc-cCCCcHHHHHHHHHHHHHHHHhcccccCCcHhhccC---CccC--CceeeEE
Confidence 899998 7888888887666654311 000 00013578999999999999999999999998 6422 2344443
Q ss_pred eecCCcCCCCcccceeEEEEecCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCC--cccCCCCCcCCCCCChHHHHHHHHH
Q psy12655 152 VINGGSHAGNKLAMQEFMILPTGASSFSEAMKIGSEVYHHLKKVINTKFGLDA--TAVGDEGGFAPNILDNKEGLRLIVE 229 (299)
Q Consensus 152 vinGG~ha~~~l~iQEfmiiP~ga~s~~eal~~~~ev~~~l~~~l~~k~G~~~--t~vgdeGgfap~~~~~e~aL~ll~e 229 (299)
.+.++. .+..+.++.+ ++..+ .|... ..+|. ++... ++.++.++.|..
T Consensus 132 ~~~~~~------------------~~~~~~~~~a-------~~~~~--~Gf~~~Kik~g~--~~~~~-~~~~~d~~~v~~ 181 (357)
T cd03316 132 SGGGYD------------------DSPEELAEEA-------KRAVA--EGFTAVKLKVGG--PDSGG-EDLREDLARVRA 181 (357)
T ss_pred ecCCCC------------------CCHHHHHHHH-------HHHHH--cCCCEEEEcCCC--CCcch-HHHHHHHHHHHH
Confidence 332110 0333332222 22222 24211 12221 11111 345666666666
Q ss_pred HHHHcccccceEEEeeccccccccCCceeeecCCCCCCCCCccCHHHHHHHHHHHHhcCCeeEeecCCC
Q psy12655 230 AIEKAGYTGKVEIGMDVAASEFFKEGQYDLDFKNPNSDKSQWLPADKLTALYQEFIKEYPIVSIEDPML 298 (299)
Q Consensus 230 Ai~~ag~~~~i~ialD~AAse~~~~g~Y~~~fk~~~~~~~~~~t~~elid~y~~l~~~yPIvsiEDp~~ 298 (299)
.-+.+| .++.|.+|+- + .+|.+|.+++...| ++|.+.+||+|+.
T Consensus 182 ir~~~g--~~~~l~vDaN-------~---------------~~~~~~a~~~~~~l-~~~~i~~iEqP~~ 225 (357)
T cd03316 182 VREAVG--PDVDLMVDAN-------G---------------RWDLAEAIRLARAL-EEYDLFWFEEPVP 225 (357)
T ss_pred HHHhhC--CCCEEEEECC-------C---------------CCCHHHHHHHHHHh-CccCCCeEcCCCC
Confidence 655565 4688888861 1 24567777666555 6788999999985
No 21
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=98.51 E-value=6.4e-06 Score=79.86 Aligned_cols=117 Identities=21% Similarity=0.301 Sum_probs=77.6
Q ss_pred ceeeEEEeEEeCCCCCeeEEEEEEECCCce-EEEeecCCCCcceeeeeeccCCcccccCccHHHHHHHHHHhHHHHHhcC
Q psy12655 2 PISKIHARQIFDSRGNPTVEVDLTTELGLF-RAAVPSGASTGIYEALELRDNDKAHYHGKGVTKAVGFINNDIAPALLKE 80 (299)
Q Consensus 2 ~I~~v~ar~ilDsrG~pTvevev~~~~g~~-ra~~psGaS~G~~Ea~elrd~~~~~~~Gkgv~~Av~~in~~i~p~Li~~ 80 (299)
+|++|... ++ +-+++.|=|+|.|++|.. -|-++. +|. .......+++.++|.|+
T Consensus 1 kI~~ie~~-~~-~~~~~~vlV~v~td~G~~G~GE~~~---~~~------------------~~~~~~~i~~~l~p~l~-- 55 (361)
T cd03322 1 KITAIEVI-VT-CPGRNFVTLKITTDQGVTGLGDATL---NGR------------------ELAVKAYLREHLKPLLI-- 55 (361)
T ss_pred CeEEEEEE-EE-CCCCCEEEEEEEeCCCCeEEEeccc---CCC------------------HHHHHHHHHHHHHHHcC--
Confidence 58888884 33 345667889999999974 443221 110 11123456778999999
Q ss_pred CCCccchHHHHHHHHhhcCCCCcccCCChhhHHHHHHHHHHHHHhcCCchHHHHHhhhCCCcccccc
Q psy12655 81 SFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLYKHLADLAGNSNIILPV 147 (299)
Q Consensus 81 g~~~~dQ~~ID~~L~~lDgT~nks~lGaNailavSlA~akAaA~~~~~pLy~yi~~l~g~~~~~lP~ 147 (299)
|.++.+...+-+.|....-... ......++.|+.+|+.=+.|+..|+|||+.|+ |.....+|+
T Consensus 56 G~d~~~~~~~~~~~~~~~~~~~-~~~~~~a~aaid~AlwDl~gk~~g~Pl~~LLG---g~~r~~v~~ 118 (361)
T cd03322 56 GRDANRIEDIWQYLYRGAYWRR-GPVTMNAIAAVDMALWDIKGKAAGMPLYQLLG---GKSRDGIMV 118 (361)
T ss_pred CCChhHHHHHHHHHHHhcccCC-chHHHHHHHHHHHHHHHHhHhhcCCcHHHHcC---CCccCeeeE
Confidence 7899988888777754210000 00112378999999999999999999999998 643334443
No 22
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=98.42 E-value=7.6e-05 Score=72.45 Aligned_cols=168 Identities=16% Similarity=0.222 Sum_probs=98.8
Q ss_pred HHHHHHhHHHHHhcCCCCccchHHHHHHHHhhcCCCCcccCCChhhHHHHHHHHHHHHHhcCCchHHHHHhhhCCCcccc
Q psy12655 66 VGFINNDIAPALLKESFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLYKHLADLAGNSNIIL 145 (299)
Q Consensus 66 v~~in~~i~p~Li~~g~~~~dQ~~ID~~L~~lDgT~nks~lGaNailavSlA~akAaA~~~~~pLy~yi~~l~g~~~~~l 145 (299)
...+...++|.|+ |.|+.+-+++-+.|...-. .....|+-|+.||+.=..++..|+|||+.|+ |.. .
T Consensus 58 ~~~~~~~l~p~li--G~d~~~~~~~~~~~~~~~~-----~~~~~A~said~AlwDl~gk~~g~Pl~~LLG---g~~-~-- 124 (368)
T cd03329 58 PALVDRFLKKVLI--GQDPLDRERLWQDLWRLQR-----GLTDRGLGLVDIALWDLAGKYLGLPVHRLLG---GYR-E-- 124 (368)
T ss_pred HHHHHHHHHHhcC--CCChhHHHHHHHHHHHHhc-----CcchhHHHHHHHHHHHHhhhhcCCcHHHHhh---ccc-c--
Confidence 3456778999999 7899998888777755311 1334589999999999999999999999998 632 2
Q ss_pred ccceEEeecCCcCCCCcccceeEEEEecCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCCCCCcCCCCCChHHHHH
Q psy12655 146 PVPAFNVINGGSHAGNKLAMQEFMILPTGASSFSEAMKIGSEVYHHLKKVINTKFGLDATAVGDEGGFAPNILDNKEGLR 225 (299)
Q Consensus 146 P~P~~nvinGG~ha~~~l~iQEfmiiP~ga~s~~eal~~~~ev~~~l~~~l~~k~G~~~t~vgdeGgfap~~~~~e~aL~ 225 (299)
.+|....+..|.+ +.+..+.++..+.+ ++..+ .|.....+- +| .+. ..++.++
T Consensus 125 ~v~~y~s~~~~~~-------------~~~~~~~~~~~~~a-------~~~~~--~Gf~~~Kik--~~-~~~--~~~~di~ 177 (368)
T cd03329 125 KIPAYASTMVGDD-------------LEGLESPEAYADFA-------EECKA--LGYRAIKLH--PW-GPG--VVRRDLK 177 (368)
T ss_pred ceeEEEecCCCcc-------------cccCCCHHHHHHHH-------HHHHH--cCCCEEEEe--cC-Cch--hHHHHHH
Confidence 3344433322211 11233444433322 22222 242111120 11 110 1344555
Q ss_pred HHHHHHHHcccccceEEEeeccccccccCCceeeecCCCCCCCCCccCHHHHHHHHHHHHhcCCeeEeecCCC
Q psy12655 226 LIVEAIEKAGYTGKVEIGMDVAASEFFKEGQYDLDFKNPNSDKSQWLPADKLTALYQEFIKEYPIVSIEDPML 298 (299)
Q Consensus 226 ll~eAi~~ag~~~~i~ialD~AAse~~~~g~Y~~~fk~~~~~~~~~~t~~elid~y~~l~~~yPIvsiEDp~~ 298 (299)
.+...=+.+| +++.|.+|+. + .+|.++.+.+.+.| ++|++.+||+|+.
T Consensus 178 ~i~~vR~~~G--~~~~l~vDan-------~---------------~~~~~~A~~~~~~l-~~~~l~~iEeP~~ 225 (368)
T cd03329 178 ACLAVREAVG--PDMRLMHDGA-------H---------------WYSRADALRLGRAL-EELGFFWYEDPLR 225 (368)
T ss_pred HHHHHHHHhC--CCCeEEEECC-------C---------------CcCHHHHHHHHHHh-hhcCCCeEeCCCC
Confidence 5554444555 4688999972 1 24456666555554 6688899999984
No 23
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=98.34 E-value=4.1e-05 Score=74.28 Aligned_cols=194 Identities=18% Similarity=0.184 Sum_probs=111.8
Q ss_pred CeeEEEEEEECCCce-EEEeecCCCCcceeeeeeccCCcccccCccHHHHHHHHHHhHHHHHhcCCCCccchHHHHHHHH
Q psy12655 17 NPTVEVDLTTELGLF-RAAVPSGASTGIYEALELRDNDKAHYHGKGVTKAVGFINNDIAPALLKESFEVTQQKEIDEFMI 95 (299)
Q Consensus 17 ~pTvevev~~~~g~~-ra~~psGaS~G~~Ea~elrd~~~~~~~Gkgv~~Av~~in~~i~p~Li~~g~~~~dQ~~ID~~L~ 95 (299)
.+++=|+|+|++|.. .|-+.. +. ...|.|.+.......+++.++|.|+ |.++.+...+-+.|.
T Consensus 27 ~~~~~V~v~t~~G~~G~Ge~~~-----------~~---~~~~~~~~~~~~~~~~~~~~~~~l~--G~~~~~~~~~~~~~~ 90 (368)
T TIGR02534 27 QTLVLVRIRTEDGVIGYGEGTT-----------IG---GLWWGGESPETIKANIDTYLAPVLV--GRDATEIAAIMADLE 90 (368)
T ss_pred ccEEEEEEEECCCCeEEEecCC-----------CC---CCccCCCCHHHHHHHHHHhhHHHHc--CCChhhHHHHHHHHH
Confidence 467889999998864 443321 10 0135555566666778888999999 677766544433333
Q ss_pred hhcCCCCcccCCChhhHHHHHHHHHHHHHhcCCchHHHHHhhhCCCccccccceEEeecCCcCCCCcccceeEEEEecCC
Q psy12655 96 KLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLYKHLADLAGNSNIILPVPAFNVINGGSHAGNKLAMQEFMILPTGA 175 (299)
Q Consensus 96 ~lDgT~nks~lGaNailavSlA~akAaA~~~~~pLy~yi~~l~g~~~~~lP~P~~nvinGG~ha~~~l~iQEfmiiP~ga 175 (299)
.+- .-+..++.|+.+|+.-+.++..|+|+|+.|+ |.....+|+ .-.+. .
T Consensus 91 ~~~------~~~~~a~said~AlwDl~gK~~g~Pv~~LLG---g~~r~~v~~--~~~~~------------------~-- 139 (368)
T TIGR02534 91 KVV------AGNRFAKAAVDTALHDAQARRLGVPVSELLG---GRVRDSVDV--TWTLA------------------S-- 139 (368)
T ss_pred HHh------cCCchHHHHHHHHHHHHHHHHcCCcHHHHhC---CCCCCceEE--EEEEe------------------C--
Confidence 221 0122389999999999999999999999998 643233332 21111 1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhcCCCC--cccCCCCCcCCCCCChHHHHHHHHHHHHHcccccceEEEeecccccccc
Q psy12655 176 SSFSEAMKIGSEVYHHLKKVINTKFGLDA--TAVGDEGGFAPNILDNKEGLRLIVEAIEKAGYTGKVEIGMDVAASEFFK 253 (299)
Q Consensus 176 ~s~~eal~~~~ev~~~l~~~l~~k~G~~~--t~vgdeGgfap~~~~~e~aL~ll~eAi~~ag~~~~i~ialD~AAse~~~ 253 (299)
.+..+.++ ++++.++ +.|... ..+|. .++++-++.+...-+..| +++.|.+|+-
T Consensus 140 ~~~~~~~~-------~~~~~~~-~~Gf~~~KiKvg~--------~~~~~d~~~v~~~re~~g--~~~~l~~DaN------ 195 (368)
T TIGR02534 140 GDTDRDIA-------EAEERIE-EKRHRSFKLKIGA--------RDPADDVAHVVAIAKALG--DRASVRVDVN------ 195 (368)
T ss_pred CCHHHHHH-------HHHHHHH-hcCcceEEEEeCC--------CCcHHHHHHHHHHHHhcC--CCcEEEEECC------
Confidence 11112222 2222222 124211 12331 234555666666556555 4688999961
Q ss_pred CCceeeecCCCCCCCCCccCHHHHHHHHHHHHhcCCeeEeecCCC
Q psy12655 254 EGQYDLDFKNPNSDKSQWLPADKLTALYQEFIKEYPIVSIEDPML 298 (299)
Q Consensus 254 ~g~Y~~~fk~~~~~~~~~~t~~elid~y~~l~~~yPIvsiEDp~~ 298 (299)
..+|.++-+.+. +.+++|.+.+||+|+.
T Consensus 196 ----------------~~~~~~~A~~~~-~~l~~~~~~~iEeP~~ 223 (368)
T TIGR02534 196 ----------------AAWDERTALHYL-PQLADAGVELIEQPTP 223 (368)
T ss_pred ----------------CCCCHHHHHHHH-HHHHhcChhheECCCC
Confidence 124556655544 4446688999999984
No 24
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=98.31 E-value=3.9e-05 Score=75.56 Aligned_cols=76 Identities=20% Similarity=0.163 Sum_probs=55.5
Q ss_pred HHHHHHhHHHHHhcCCCCccchHHHHHHHHhhcCCCCcccCCChhhHHHHHHHHHHHHHhcCCchHHHHHhhhCCCcccc
Q psy12655 66 VGFINNDIAPALLKESFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLYKHLADLAGNSNIIL 145 (299)
Q Consensus 66 v~~in~~i~p~Li~~g~~~~dQ~~ID~~L~~lDgT~nks~lGaNailavSlA~akAaA~~~~~pLy~yi~~l~g~~~~~l 145 (299)
...+++.|+|.|+ |.|+.+.+.+-+.|...-.......+..+|+.|+-+|+.=..++..|+|+|+.|+ |....++
T Consensus 82 ~~~v~~~l~p~Li--G~dp~~~e~l~~~m~~~~~~~g~~g~~~~A~saIDiALwDl~gK~~g~Pv~~LLG---G~~r~~v 156 (394)
T PRK15440 82 AFIVEKHLNRFIE--GKCVSDIELIWDQMLNATLYYGRKGLVMNTISCVDLALWDLLGKVRGLPVYKLLG---GAVRDEL 156 (394)
T ss_pred HHHHHHHHHHHcC--CCChhhHHHHHHHHHhhccccCCccHhhhHHHHHHHHHHHHhhhHcCCcHHHHcC---CCCCCee
Confidence 3467788999999 7899999888777754311011111234799999999999999999999999998 6533344
Q ss_pred c
Q psy12655 146 P 146 (299)
Q Consensus 146 P 146 (299)
|
T Consensus 157 ~ 157 (394)
T PRK15440 157 Q 157 (394)
T ss_pred E
Confidence 4
No 25
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=98.25 E-value=9.7e-05 Score=71.48 Aligned_cols=191 Identities=18% Similarity=0.234 Sum_probs=111.7
Q ss_pred eeEEEEEEECCCce-EEEeecCCCCcceeeeeeccCCcccccCccHHHHHHHHHHhHHHHHhcCCCCccchHHHHHHHHh
Q psy12655 18 PTVEVDLTTELGLF-RAAVPSGASTGIYEALELRDNDKAHYHGKGVTKAVGFINNDIAPALLKESFEVTQQKEIDEFMIK 96 (299)
Q Consensus 18 pTvevev~~~~g~~-ra~~psGaS~G~~Ea~elrd~~~~~~~Gkgv~~Av~~in~~i~p~Li~~g~~~~dQ~~ID~~L~~ 96 (299)
..+=|+|+|++|.. .|-+.. +.. ..|.|......+..++..++|.|+ |.++.+...+-+.|..
T Consensus 29 ~~~~V~v~t~~G~~G~GE~~~-----------~~~---~~~~~~~~~~~~~~l~~~~~~~l~--G~~~~~~~~~~~~l~~ 92 (365)
T cd03318 29 SLVLVRLTTSDGVVGIGEATT-----------PGG---PAWGGESPETIKAIIDRYLAPLLI--GRDATNIGAAMALLDR 92 (365)
T ss_pred ceEEEEEEECCCCeEEEecCC-----------CCC---CccCCCCHHHHHHHHHHhhHHHHc--CCChHHHHHHHHHHHH
Confidence 44668888988864 333211 100 013344445556778888999998 7888887766555433
Q ss_pred -hcCCCCcccCCChhhHHHHHHHHHHHHHhcCCchHHHHHhhhCCCccccccceEEeecCCcCCCCcccceeEEEEecCC
Q psy12655 97 -LDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLYKHLADLAGNSNIILPVPAFNVINGGSHAGNKLAMQEFMILPTGA 175 (299)
Q Consensus 97 -lDgT~nks~lGaNailavSlA~akAaA~~~~~pLy~yi~~l~g~~~~~lP~P~~nvinGG~ha~~~l~iQEfmiiP~ga 175 (299)
+.+ +..++.|+.+|+.-+.++..|+|+|+.|+ |.....+|+ .-.+. .+
T Consensus 93 ~~~~-------~~~a~said~AlwDl~gK~~g~Pl~~LLG---g~~~~~v~~--~~~~~------------------~~- 141 (365)
T cd03318 93 AVAG-------NLFAKAAIEMALLDAQGRRLGLPVSELLG---GRVRDSLPV--AWTLA------------------SG- 141 (365)
T ss_pred HhcC-------CccHHHHHHHHHHHHHHhHcCCCHHHHcC---CCcCCceEE--EEEEe------------------CC-
Confidence 221 23488999999999999999999999998 643333433 21111 11
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhcC-C--CCcccCCCCCcCCCCCChHHHHHHHHHHHHHcccccceEEEeeccccccc
Q psy12655 176 SSFSEAMKIGSEVYHHLKKVINTKFG-L--DATAVGDEGGFAPNILDNKEGLRLIVEAIEKAGYTGKVEIGMDVAASEFF 252 (299)
Q Consensus 176 ~s~~eal~~~~ev~~~l~~~l~~k~G-~--~~t~vgdeGgfap~~~~~e~aL~ll~eAi~~ag~~~~i~ialD~AAse~~ 252 (299)
+..+..+ ...+.++ .| . +-..+|. .++++-++.|...-+..| .++.|.+|+-
T Consensus 142 -~~~~~~~-------~~~~~~~--~G~f~~~KiKvg~--------~~~~~d~~~v~avr~~~g--~~~~l~iDaN----- 196 (365)
T cd03318 142 -DTERDIA-------EAEEMLE--AGRHRRFKLKMGA--------RPPADDLAHVEAIAKALG--DRASVRVDVN----- 196 (365)
T ss_pred -CHHHHHH-------HHHHHHh--CCCceEEEEEeCC--------CChHHHHHHHHHHHHHcC--CCcEEEEECC-----
Confidence 1222222 2222332 13 1 1112331 234556666655555555 3688999972
Q ss_pred cCCceeeecCCCCCCCCCccCHHHHHHHHHHHHhcCCeeEeecCCC
Q psy12655 253 KEGQYDLDFKNPNSDKSQWLPADKLTALYQEFIKEYPIVSIEDPML 298 (299)
Q Consensus 253 ~~g~Y~~~fk~~~~~~~~~~t~~elid~y~~l~~~yPIvsiEDp~~ 298 (299)
..+|.++-+. +.+.+++|.+.+||+|+.
T Consensus 197 -----------------~~~~~~~A~~-~~~~l~~~~~~~iEeP~~ 224 (365)
T cd03318 197 -----------------QAWDESTAIR-ALPRLEAAGVELIEQPVP 224 (365)
T ss_pred -----------------CCCCHHHHHH-HHHHHHhcCcceeeCCCC
Confidence 1245556444 445567789999999985
No 26
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=98.23 E-value=8.3e-05 Score=71.95 Aligned_cols=67 Identities=21% Similarity=0.228 Sum_probs=50.5
Q ss_pred HHHHHHhHHHHHhcCCCCccchHHHHHHHHhh-cCCCCcccCCChhhHHHHHHHHHHHHHhcCCchHHHHH
Q psy12655 66 VGFINNDIAPALLKESFEVTQQKEIDEFMIKL-DGTENKSKFGANAILGVSLAVAKAGAAKKGVPLYKHLA 135 (299)
Q Consensus 66 v~~in~~i~p~Li~~g~~~~dQ~~ID~~L~~l-DgT~nks~lGaNailavSlA~akAaA~~~~~pLy~yi~ 135 (299)
...+++.++|.|+ |.|+.+...|-+.|... .+... +.....|+.|+.+|+.=..++..|+|+|+.|+
T Consensus 53 ~~~i~~~~~p~li--G~d~~~~~~l~~~~~~~~~~~~~-~g~~~~a~aaiD~AlwDl~gK~~g~Pv~~LLG 120 (352)
T cd03328 53 AALVDGLLAPVVE--GRDALDPPAAWEAMQRAVRNAGR-PGVAAMAISAVDIALWDLKARLLGLPLARLLG 120 (352)
T ss_pred HHHHHHHHHHHhc--CCCcccHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHhhhhcCCcHHHHhc
Confidence 3356778999999 78999988887777543 21111 01112588999999999999999999999998
No 27
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=98.11 E-value=0.00021 Score=69.42 Aligned_cols=92 Identities=23% Similarity=0.287 Sum_probs=60.3
Q ss_pred eEEEEEEECCCce-EEEeecCCCCcceeeeeeccCCcccccCccHHHHHHHHHHhHHHHHhcCCCCccchHHHHHHHHhh
Q psy12655 19 TVEVDLTTELGLF-RAAVPSGASTGIYEALELRDNDKAHYHGKGVTKAVGFINNDIAPALLKESFEVTQQKEIDEFMIKL 97 (299)
Q Consensus 19 Tvevev~~~~g~~-ra~~psGaS~G~~Ea~elrd~~~~~~~Gkgv~~Av~~in~~i~p~Li~~g~~~~dQ~~ID~~L~~l 97 (299)
.|=|+|.|++|.. .|-++.+..... +..... + .+++.|+ |.++.+...+.+.|..-
T Consensus 31 ~v~v~i~~d~G~~G~GE~~~~~~~~~------------------~~~~~~-~--~~~~~l~--g~d~~~i~~~~~~~~~~ 87 (372)
T COG4948 31 RVIVEITTDDGIVGWGEAVPGGRARY------------------GEEAEA-V--LLAPLLI--GRDPFDIERIWQKLYRA 87 (372)
T ss_pred EEEEEEEECCCceeeccccCcccccc------------------hhhhhH-H--HHHHHhc--CCCHHHHHHHHHHHHHh
Confidence 6788999998875 554443211110 111111 1 5889998 78888877755554332
Q ss_pred -cCCCCcccCCChhhHHHHHHHHHHHHHhcCCchHHHHH
Q psy12655 98 -DGTENKSKFGANAILGVSLAVAKAGAAKKGVPLYKHLA 135 (299)
Q Consensus 98 -DgT~nks~lGaNailavSlA~akAaA~~~~~pLy~yi~ 135 (299)
... ...+.-.++.||-+|+.=..|+..|+|||+.|+
T Consensus 88 ~~~~--~~~~~~~a~sAvd~ALwDl~gK~~g~Pv~~LLG 124 (372)
T COG4948 88 GFAR--RGGITMAAISAVDIALWDLAGKALGVPVYKLLG 124 (372)
T ss_pred cccc--cchHHHHHHHHHHHHHHHHHHhHcCCcHHHHcC
Confidence 221 112223699999999999999999999999998
No 28
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=98.10 E-value=0.00023 Score=67.45 Aligned_cols=158 Identities=22% Similarity=0.248 Sum_probs=92.7
Q ss_pred HHHHHHHHHHhHHHHHhcCCCCccchHHHHHHHHhhcCCCCcccCCChhhHHHHHHHHHHHHHhcCCchHHHHHhhhCCC
Q psy12655 62 VTKAVGFINNDIAPALLKESFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLYKHLADLAGNS 141 (299)
Q Consensus 62 v~~Av~~in~~i~p~Li~~g~~~~dQ~~ID~~L~~lDgT~nks~lGaNailavSlA~akAaA~~~~~pLy~yi~~l~g~~ 141 (299)
...+...++. +.|.|+ |.++. ...+-+.|...- .-+..++.|+.+|++-+.++..|+|+|+.|+ |..
T Consensus 54 ~~~~~~~~~~-~~~~l~--G~~~~-~~~~~~~l~~~~------~~~~~a~~aid~AlwDl~gk~~g~pv~~ll~---g~~ 120 (316)
T cd03319 54 VESVLAALKS-VRPALI--GGDPR-LEKLLEALQELL------PGNGAARAAVDIALWDLEAKLLGLPLYQLWG---GGA 120 (316)
T ss_pred HHHHHHHHHH-HHHHhc--CCCch-HHHHHHHHHHhc------cCChHHHHHHHHHHHHHHHHHcCCcHHHHcC---CCC
Confidence 3444555665 489998 67776 554444443321 1134589999999999999999999999865 433
Q ss_pred ccccccceEEeecCCcCCCCcccceeEEEEecCCCCHHHHHHHHHHHHHHHHHHHhhhcCC--CCcccCCCCCcCCCCCC
Q psy12655 142 NIILPVPAFNVINGGSHAGNKLAMQEFMILPTGASSFSEAMKIGSEVYHHLKKVINTKFGL--DATAVGDEGGFAPNILD 219 (299)
Q Consensus 142 ~~~lP~P~~nvinGG~ha~~~l~iQEfmiiP~ga~s~~eal~~~~ev~~~l~~~l~~k~G~--~~t~vgdeGgfap~~~~ 219 (299)
...+|+ .-.+ + ..+.++.+ ..+++.++ .|. +-..+| + +
T Consensus 121 ~~~~~~--~~~~------------------~--~~~~~~~~-------~~~~~~~~--~Gf~~iKik~g---~------~ 160 (316)
T cd03319 121 PRPLET--DYTI------------------S--IDTPEAMA-------AAAKKAAK--RGFPLLKIKLG---G------D 160 (316)
T ss_pred CCCcee--EEEE------------------e--CCCHHHHH-------HHHHHHHH--cCCCEEEEEeC---C------C
Confidence 333442 1111 1 11222222 22233332 242 111232 1 2
Q ss_pred hHHHHHHHHHHHHHcccccceEEEeeccccccccCCceeeecCCCCCCCCCccCHHHHHHHHHHHHhcCCeeEeecCCC
Q psy12655 220 NKEGLRLIVEAIEKAGYTGKVEIGMDVAASEFFKEGQYDLDFKNPNSDKSQWLPADKLTALYQEFIKEYPIVSIEDPML 298 (299)
Q Consensus 220 ~e~aL~ll~eAi~~ag~~~~i~ialD~AAse~~~~g~Y~~~fk~~~~~~~~~~t~~elid~y~~l~~~yPIvsiEDp~~ 298 (299)
.++.++.+....+..| ++.|.+|+- ..+|.++.+++...| ++|++.+||||+.
T Consensus 161 ~~~d~~~v~~lr~~~g---~~~l~vD~n----------------------~~~~~~~A~~~~~~l-~~~~l~~iEeP~~ 213 (316)
T cd03319 161 LEDDIERIRAIREAAP---DARLRVDAN----------------------QGWTPEEAVELLREL-AELGVELIEQPVP 213 (316)
T ss_pred hhhHHHHHHHHHHhCC---CCeEEEeCC----------------------CCcCHHHHHHHHHHH-HhcCCCEEECCCC
Confidence 3566777777666666 578888872 124456766666555 6789999999985
No 29
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=98.06 E-value=0.00037 Score=66.63 Aligned_cols=95 Identities=15% Similarity=0.132 Sum_probs=65.9
Q ss_pred CeeEEEEEEECCCce-EEEeecCCCCcceeeeeeccCCcccccCccHHHHHHHHHHhHHHHHhcCCCCccchHHHHHHHH
Q psy12655 17 NPTVEVDLTTELGLF-RAAVPSGASTGIYEALELRDNDKAHYHGKGVTKAVGFINNDIAPALLKESFEVTQQKEIDEFMI 95 (299)
Q Consensus 17 ~pTvevev~~~~g~~-ra~~psGaS~G~~Ea~elrd~~~~~~~Gkgv~~Av~~in~~i~p~Li~~g~~~~dQ~~ID~~L~ 95 (299)
..++=|+|.|++|.. -|-++. ..- .-|.|..+..+...+++.++|.|+ | ++.+-.++-+.|.
T Consensus 21 ~~~~lV~v~~~~G~~G~GE~~~-----------~~~---~~~~~~~~~~~~~~i~~~~~~~l~--g-~~~~~~~~~~~~~ 83 (324)
T TIGR01928 21 RDCLIIELIDDKGNAGFGEVVA-----------FQT---PWYTHETIATVKHIIEDFFEPNIN--K-EFEHPSEALELVR 83 (324)
T ss_pred CcEEEEEEEECCCCeEEEeccc-----------cCC---CCcCcccHHHHHHHHHHHHHHHhc--C-CCCCHHHHHHHHH
Confidence 466779999998864 333211 000 013333455566777888899998 7 7887777766664
Q ss_pred hhcCCCCcccCCChhhHHHHHHHHHHHHHhcCCchHHHHH
Q psy12655 96 KLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLYKHLA 135 (299)
Q Consensus 96 ~lDgT~nks~lGaNailavSlA~akAaA~~~~~pLy~yi~ 135 (299)
.+. -+..++.|+-+|+.-+.++..|+|||+.|+
T Consensus 84 ~~~-------~~~~a~said~AlwDl~gk~~g~Pl~~llG 116 (324)
T TIGR01928 84 SLK-------GTPMAKAGLEMALWDMYHKLPSFSLAYGQG 116 (324)
T ss_pred Hcc-------CCcHHHHHHHHHHHHHHHhhhCCcHHHHhC
Confidence 331 133489999999999999999999999998
No 30
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=97.98 E-value=0.0011 Score=65.85 Aligned_cols=111 Identities=22% Similarity=0.208 Sum_probs=66.2
Q ss_pred ceeeEEEeEEe-------CCC----CCe---eEEEEEEECC-Cce-EEEeecCCCCcceeeeeeccCCcccccCccHHHH
Q psy12655 2 PISKIHARQIF-------DSR----GNP---TVEVDLTTEL-GLF-RAAVPSGASTGIYEALELRDNDKAHYHGKGVTKA 65 (299)
Q Consensus 2 ~I~~v~ar~il-------Dsr----G~p---Tvevev~~~~-g~~-ra~~psGaS~G~~Ea~elrd~~~~~~~Gkgv~~A 65 (299)
+|++|..+.+= +.. -.| ++=|+|.|++ |.. -|-+.. +| .+....
T Consensus 2 kI~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~V~i~td~~G~~G~Ge~~~---~~-----------------~~~~~~ 61 (415)
T cd03324 2 KITALEVRDVRFPTSLELDGSDAMNPDPDYSAAYVVLRTDAAGLKGHGLTFT---IG-----------------RGNEIV 61 (415)
T ss_pred eEEEEEEEEEEeecCccCCCcccccCCCCceEEEEEEEecCCCCEEEEEecc---CC-----------------CchHHH
Confidence 67888877653 111 112 5668999998 875 443221 00 111112
Q ss_pred HHHHHHhHHHHHhcCCCCccchHHHHHHH-HhhcCCC---Ccc-cCC--ChhhHHHHHHHHHHHHHhcCCchHHHHH
Q psy12655 66 VGFINNDIAPALLKESFEVTQQKEIDEFM-IKLDGTE---NKS-KFG--ANAILGVSLAVAKAGAAKKGVPLYKHLA 135 (299)
Q Consensus 66 v~~in~~i~p~Li~~g~~~~dQ~~ID~~L-~~lDgT~---nks-~lG--aNailavSlA~akAaA~~~~~pLy~yi~ 135 (299)
.. +.+.++|.|+ |.|+.+...+-+.| ..+.+.. ... +-| ..|+.|+-+|++=..++..|+|+|+.|+
T Consensus 62 ~~-~~~~lap~li--G~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~saiD~AlwDl~gK~~g~Pv~~LLG 135 (415)
T cd03324 62 CA-AIEALAHLVV--GRDLESIVADMGKFWRRLTSDSQLRWIGPEKGVIHLATAAVVNAVWDLWAKAEGKPLWKLLV 135 (415)
T ss_pred HH-HHHHHHHHhC--CCCHHHHHHHHHHHHHHhhccccceecCCcccHHHHHHHHHHHHHHHHhhhhcCCcHHHHhc
Confidence 22 3356999999 78898874332222 2222110 000 112 2589999999999999999999999998
No 31
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=97.88 E-value=0.0009 Score=65.77 Aligned_cols=165 Identities=21% Similarity=0.284 Sum_probs=93.9
Q ss_pred HHHHhHHHHHhcCCCCccch----------HHHHHHHHhhcCCCCccc--CCChhhHHHHHHHHHHHHHhcCCchHHHHH
Q psy12655 68 FINNDIAPALLKESFEVTQQ----------KEIDEFMIKLDGTENKSK--FGANAILGVSLAVAKAGAAKKGVPLYKHLA 135 (299)
Q Consensus 68 ~in~~i~p~Li~~g~~~~dQ----------~~ID~~L~~lDgT~nks~--lGaNailavSlA~akAaA~~~~~pLy~yi~ 135 (299)
.|++.++|.|+ |.||.+. ..+=+.|.. .+ .... ....|+.|+-||+.=+.++..|+|+|+.|+
T Consensus 60 ~i~~~~~p~Li--G~dp~~~~~~~~~~~~~~~l~~~~~~--~~-~~~~~~~~~~A~saID~ALwDl~gK~~g~Pv~~LLG 134 (385)
T cd03326 60 LLRERFIPRLL--AAAPDSLLDDAGGNLDPARAWAAMMR--NE-KPGGHGERAVAVGALDMAVWDAVAKIAGLPLYRLLA 134 (385)
T ss_pred HHHHHHHHHhc--CCChHHhhhcccccCCHHHHHHHHHh--cC-ccCCCCHHHHHHHHHHHHHHHHhHHHcCCcHHHHcC
Confidence 37888999999 7888855 444343422 11 1111 123478999999999999999999999998
Q ss_pred hhhCCC---ccccccceEEeecCCcCCCCcccceeEEEEecCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCC--cccCCC
Q psy12655 136 DLAGNS---NIILPVPAFNVINGGSHAGNKLAMQEFMILPTGASSFSEAMKIGSEVYHHLKKVINTKFGLDA--TAVGDE 210 (299)
Q Consensus 136 ~l~g~~---~~~lP~P~~nvinGG~ha~~~l~iQEfmiiP~ga~s~~eal~~~~ev~~~l~~~l~~k~G~~~--t~vgde 210 (299)
|.. ..+-.+|.-.. +|. . .| ..+..+.++ ..++.++ .|... ..+|
T Consensus 135 ---G~~~~~~~~~~v~~y~~--~~~-~-----------~~--~~~~~~~~~-------~a~~~~~--~Gf~~~Kikvg-- 184 (385)
T cd03326 135 ---RRYGRGQADPRVPVYAA--GGY-Y-----------YP--GDDLGRLRD-------EMRRYLD--RGYTVVKIKIG-- 184 (385)
T ss_pred ---CcccCCCCCCeEEEEEe--cCC-C-----------CC--CCCHHHHHH-------HHHHHHH--CCCCEEEEeCC--
Confidence 532 11223444332 221 0 11 123333322 2223332 24211 1232
Q ss_pred CCcCCCCCChHHHHHHHHHHHHHcccccceEEEeeccccccccCCceeeecCCCCCCCCCccCHHHHHHHHHHHHhcCCe
Q psy12655 211 GGFAPNILDNKEGLRLIVEAIEKAGYTGKVEIGMDVAASEFFKEGQYDLDFKNPNSDKSQWLPADKLTALYQEFIKEYPI 290 (299)
Q Consensus 211 Ggfap~~~~~e~aL~ll~eAi~~ag~~~~i~ialD~AAse~~~~g~Y~~~fk~~~~~~~~~~t~~elid~y~~l~~~yPI 290 (299)
-.+.++.++.|...-+..| +++.|.+|+- ..+|.++-+.+...| ++|.+
T Consensus 185 ------~~~~~~di~~v~avRe~~G--~~~~l~vDaN----------------------~~w~~~~A~~~~~~l-~~~~~ 233 (385)
T cd03326 185 ------GAPLDEDLRRIEAALDVLG--DGARLAVDAN----------------------GRFDLETAIAYAKAL-APYGL 233 (385)
T ss_pred ------CCCHHHHHHHHHHHHHhcC--CCCeEEEECC----------------------CCCCHHHHHHHHHHh-hCcCC
Confidence 1234556666666656666 4789999961 124556655544444 67999
Q ss_pred eEeecCCC
Q psy12655 291 VSIEDPML 298 (299)
Q Consensus 291 vsiEDp~~ 298 (299)
.+||+|+.
T Consensus 234 ~~iEeP~~ 241 (385)
T cd03326 234 RWYEEPGD 241 (385)
T ss_pred CEEECCCC
Confidence 99999984
No 32
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=97.79 E-value=0.0018 Score=64.88 Aligned_cols=92 Identities=17% Similarity=0.159 Sum_probs=60.6
Q ss_pred CeeEEEEEEECCCce-EEEeecCCCCcceeeeeeccCCcccccCccHHHHHHHHHHhHHHHHhcCCCCccchHHHHHHHH
Q psy12655 17 NPTVEVDLTTELGLF-RAAVPSGASTGIYEALELRDNDKAHYHGKGVTKAVGFINNDIAPALLKESFEVTQQKEIDEFMI 95 (299)
Q Consensus 17 ~pTvevev~~~~g~~-ra~~psGaS~G~~Ea~elrd~~~~~~~Gkgv~~Av~~in~~i~p~Li~~g~~~~dQ~~ID~~L~ 95 (299)
...+=|.|+|++|.. .|-++. +.++.. .++ .++|.|+ |.|+.+...|-+.|.
T Consensus 32 ~~~~iV~v~Td~Gi~G~GEa~~---------------------~~~~~~---~l~-~lap~Li--G~dp~~~e~i~~~m~ 84 (441)
T TIGR03247 32 FTRNIVILTDSSGNTGVGEVPG---------------------GEKIRA---TLE-DARPLVV--GKPLGEYQNVLNDVR 84 (441)
T ss_pred ceEEEEEEEECCCCeEEEeCCC---------------------cHHHHH---HHH-HHHHHhc--CCCHHHHHHHHHHHH
Confidence 456678888888865 443321 112332 234 5899999 789998888766664
Q ss_pred hhc------CCCCc---ccCCChhhHHHHHHHHHHHHHhcCCchHHHHH
Q psy12655 96 KLD------GTENK---SKFGANAILGVSLAVAKAGAAKKGVPLYKHLA 135 (299)
Q Consensus 96 ~lD------gT~nk---s~lGaNailavSlA~akAaA~~~~~pLy~yi~ 135 (299)
..- +..+- .+....|+-|+-||+.=..++..|+|||+.|+
T Consensus 85 ~~~~~~~~~~~g~~~~~~~~~~~A~aAIDiALWDl~gK~~g~Pl~~LLG 133 (441)
T TIGR03247 85 ATFADRDAGGRGLQTFDLRTTIHAVTAIESALLDLLGQHLGVPVAALLG 133 (441)
T ss_pred HHhhcccccccCcccccchhHHHHHHHHHHHHHHHhhhHcCCCHHHHhC
Confidence 421 00000 00112488999999999999999999999997
No 33
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=97.66 E-value=0.0099 Score=58.59 Aligned_cols=100 Identities=18% Similarity=0.222 Sum_probs=61.2
Q ss_pred CeeEEEEEEECCCce-EEEeecCCCCcceeeeeeccCCcccccCccHHHHHHHHHHhHHHHHhcCCCCc-cc-hHHHHHH
Q psy12655 17 NPTVEVDLTTELGLF-RAAVPSGASTGIYEALELRDNDKAHYHGKGVTKAVGFINNDIAPALLKESFEV-TQ-QKEIDEF 93 (299)
Q Consensus 17 ~pTvevev~~~~g~~-ra~~psGaS~G~~Ea~elrd~~~~~~~Gkgv~~Av~~in~~i~p~Li~~g~~~-~d-Q~~ID~~ 93 (299)
.+++=|+|.|++|.. -+ |+ |.| ..++..+. .++|.|+ |.++ .+ ....+++
T Consensus 28 ~~~~~Vrv~td~G~~G~G-----------e~----------~~~---~~~~~~~~-~~~~~ll--g~~~~~~~~~~~~~~ 80 (395)
T cd03323 28 FTRNIVELTDDNGNTGVG-----------ES----------PGG---AEALEALL-EAARSLV--GGDVFGAYLAVLESV 80 (395)
T ss_pred ceEEEEEEEECCCCeecc-----------cc----------CCC---HHHHHHHH-HHhHHHh--CCCcchhhHHHHHHH
Confidence 377889999999863 22 11 111 12334443 4788888 5566 23 3445554
Q ss_pred HHhhcCCCCcccCC---------ChhhHHHHHHHHHHHHHhcCCchHHHHHhhhCCCcccccc
Q psy12655 94 MIKLDGTENKSKFG---------ANAILGVSLAVAKAGAAKKGVPLYKHLADLAGNSNIILPV 147 (299)
Q Consensus 94 L~~lDgT~nks~lG---------aNailavSlA~akAaA~~~~~pLy~yi~~l~g~~~~~lP~ 147 (299)
...+-.. ..++-| ..|+.|+-+|+.=..++..|+|||+.|+ |....++|+
T Consensus 81 ~~~~~~~-~~~~~g~~~~~~~~~~~A~saiD~ALwDl~gK~~g~Pl~~LLG---G~~r~~v~~ 139 (395)
T cd03323 81 RVAFADR-DAGGRGLQTFDLRTTVHVVTAFEVALLDLLGQALGVPVADLLG---GGQRDSVPF 139 (395)
T ss_pred HHHHhcc-cccccCccccchhHHHHHHHHHHHHHHHHhhhhcCCCHHHHhC---CCccCeEEE
Confidence 4433111 111112 4578999999999999999999999998 653334443
No 34
>PF02746 MR_MLE_N: Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; InterPro: IPR013341 Mandelate racemase 5.1.2.2 from EC (MR) and muconate lactonizing enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the N-terminal region of these proteins.; PDB: 2OX4_F 3T9P_A 2QQ6_A 3CYJ_C 3GY1_A 3S47_B 3RRA_B 3RR1_A 3STP_A 3T8Q_A ....
Probab=97.55 E-value=0.0009 Score=54.41 Aligned_cols=91 Identities=21% Similarity=0.242 Sum_probs=66.1
Q ss_pred CeeEEEEEEECCCce-EEEeecCCCCcceeeeeeccCCcccccCccHHHHHHHHHHhHHHHHhcCCCCccchHHHHHHHH
Q psy12655 17 NPTVEVDLTTELGLF-RAAVPSGASTGIYEALELRDNDKAHYHGKGVTKAVGFINNDIAPALLKESFEVTQQKEIDEFMI 95 (299)
Q Consensus 17 ~pTvevev~~~~g~~-ra~~psGaS~G~~Ea~elrd~~~~~~~Gkgv~~Av~~in~~i~p~Li~~g~~~~dQ~~ID~~L~ 95 (299)
++.|-|+|.|++|.. -|-+++. ++ ........+.+.+.|.|+ |.++.+...+.+.|.
T Consensus 26 ~~~v~V~l~t~~G~~G~Ge~~~~--~~------------------~~~~~~~~~~~~l~~~l~--g~~~~~~~~~~~~~~ 83 (117)
T PF02746_consen 26 REFVLVRLETDDGVVGWGEAFPS--PG------------------TAETVASALEDYLAPLLI--GQDPDDIEDIWQELY 83 (117)
T ss_dssp EEEEEEEEEETTSEEEEEEEESS--SS------------------SHHHHHHHHHHTHHHHHT--TSBTTGHHHHHHHHH
T ss_pred eEEEEEEEEECCCCEEEEEeeCC--cc------------------hhHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHH
Confidence 467889999999976 5544431 11 134455667788999998 788888777776664
Q ss_pred hhcCCCCcccCCChhhHHHHHHHHHHHHHhcCCchHHHHH
Q psy12655 96 KLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLYKHLA 135 (299)
Q Consensus 96 ~lDgT~nks~lGaNailavSlA~akAaA~~~~~pLy~yi~ 135 (299)
..- .-..-|+-|+.+|+.=+.|+..|+|||++||
T Consensus 84 ~~~------~~~~~a~aaid~AlwDl~gK~~g~Pl~~LlG 117 (117)
T PF02746_consen 84 RLI------KGNPAAKAAIDMALWDLLGKIAGQPLYQLLG 117 (117)
T ss_dssp HHT------SSHHHHHHHHHHHHHHHHHHHHTSBHHHHTT
T ss_pred Hhc------cchHHHHHHHHHHHHHHHHHHcCCCHHHHcC
Confidence 431 1134577899999999999999999999885
No 35
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=97.36 E-value=0.0018 Score=58.60 Aligned_cols=25 Identities=36% Similarity=0.507 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHhcCCchHHHHH
Q psy12655 111 ILGVSLAVAKAGAAKKGVPLYKHLA 135 (299)
Q Consensus 111 ilavSlA~akAaA~~~~~pLy~yi~ 135 (299)
+.|+.+|+.-+.++..|+|+|+.|+
T Consensus 44 ~~aid~Al~Dl~gk~~~~pl~~llg 68 (229)
T cd00308 44 ISGIDMALWDLAAKALGVPLAELLG 68 (229)
T ss_pred HHHHHHHHHHHhHhHcCCcHHHHcC
Confidence 8999999999999999999999998
No 36
>PRK15129 L-Ala-D/L-Glu epimerase; Provisional
Probab=96.70 E-value=0.074 Score=50.81 Aligned_cols=60 Identities=13% Similarity=0.201 Sum_probs=42.4
Q ss_pred ccHHHHHHHHHHhHHHHHhcCCCCccchHHHHHHHHhhcCCCCcccCCChhhHHHHHHHHHHHHHhcCCchHHHHH
Q psy12655 60 KGVTKAVGFINNDIAPALLKESFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLYKHLA 135 (299)
Q Consensus 60 kgv~~Av~~in~~i~p~Li~~g~~~~dQ~~ID~~L~~lDgT~nks~lGaNailavSlA~akAaA~~~~~pLy~yi~ 135 (299)
.....+...++ .+.|.|+ .+.+ ...+++++ + ..-+..|+.+|+.-..++..++|||+.|+
T Consensus 53 ~~~~~~~~~l~-~~~~~l~-~~~~---~~~~~~~~----~-------~~~a~~aid~AlwDl~gk~~~~pl~~llG 112 (321)
T PRK15129 53 ESDASVMAQIM-SVVPQLE-KGLT---REALQKLL----P-------AGAARNAVDCALWDLAARQQQQSLAQLIG 112 (321)
T ss_pred CCHHHHHHHHH-HHHHHHh-CCCC---HHHHHhhc----c-------ChHHHHHHHHHHHHHHHHHcCCcHHHHcC
Confidence 45566666665 5889997 2332 23344432 1 12488999999999999999999999998
No 37
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=96.66 E-value=0.15 Score=58.99 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=27.3
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCchHHHHH
Q psy12655 106 FGANAILGVSLAVAKAGAAKKGVPLYKHLA 135 (299)
Q Consensus 106 lGaNailavSlA~akAaA~~~~~pLy~yi~ 135 (299)
.-..+..|+.||++-+.++..|+|||+.|+
T Consensus 1035 ~~psa~~ald~ALwDl~gk~~g~Pl~~LLG 1064 (1655)
T PLN02980 1035 IFPSVRCGLEMAILNAIAVRHGSSLLNILD 1064 (1655)
T ss_pred cchHHHHHHHHHHHHHHHHHcCCcHHHHhC
Confidence 345689999999999999999999999997
No 38
>PRK05105 O-succinylbenzoate synthase; Provisional
Probab=95.10 E-value=0.92 Score=43.46 Aligned_cols=55 Identities=13% Similarity=0.138 Sum_probs=35.7
Q ss_pred ChHHHHHHHHHHHHHcccccceEEEeeccccccccCCceeeecCCCCCCCCCccCHHHHHHHHHHHHhc--CCeeEeecC
Q psy12655 219 DNKEGLRLIVEAIEKAGYTGKVEIGMDVAASEFFKEGQYDLDFKNPNSDKSQWLPADKLTALYQEFIKE--YPIVSIEDP 296 (299)
Q Consensus 219 ~~e~aL~ll~eAi~~ag~~~~i~ialD~AAse~~~~g~Y~~~fk~~~~~~~~~~t~~elid~y~~l~~~--yPIvsiEDp 296 (299)
++++-++.|...-+.. +++.|.+|+- ..+|.++-+.+...|-+. |+|.+||+|
T Consensus 140 ~~~~d~~~i~~vr~~~---~~~~l~vDaN----------------------~~w~~~~A~~~~~~l~~~~~~~i~~iEqP 194 (322)
T PRK05105 140 EAVRDGMLVNLLLEAI---PDLKLRLDAN----------------------RGWTLEKAQQFAKYVPPDYRHRIAFLEEP 194 (322)
T ss_pred CHHHHHHHHHHHHHhC---CCCeEEEECC----------------------CCCCHHHHHHHHHHhhhhcCCCccEEECC
Confidence 4455566555544332 4688888861 235667777777666442 889999999
Q ss_pred CC
Q psy12655 297 ML 298 (299)
Q Consensus 297 ~~ 298 (299)
+.
T Consensus 195 ~~ 196 (322)
T PRK05105 195 CK 196 (322)
T ss_pred CC
Confidence 84
No 39
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=94.97 E-value=0.53 Score=43.39 Aligned_cols=119 Identities=17% Similarity=0.284 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHHHHhcCCchHHHHHhhhCCCccccccceEEeecCCcCCCCcccceeEEEEecCCCCHHHHHHHHHHHHH
Q psy12655 111 ILGVSLAVAKAGAAKKGVPLYKHLADLAGNSNIILPVPAFNVINGGSHAGNKLAMQEFMILPTGASSFSEAMKIGSEVYH 190 (299)
Q Consensus 111 ilavSlA~akAaA~~~~~pLy~yi~~l~g~~~~~lP~P~~nvinGG~ha~~~l~iQEfmiiP~ga~s~~eal~~~~ev~~ 190 (299)
+.|+.+|+.-+.++..|+|+|+.++ +. ...+|+ ...+ +. .+..+..+
T Consensus 45 ~~aid~Al~Dl~gk~~g~pv~~llG---~~-~~~i~~--~~~~------------------~~--~~~~~~~~------- 91 (265)
T cd03315 45 KAAVDMALWDLWGKRLGVPVYLLLG---GY-RDRVRV--AHML------------------GL--GEPAEVAE------- 91 (265)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHcC---CC-CCceEE--EEEe------------------cC--CCHHHHHH-------
Confidence 7899999999999999999998876 42 223443 2222 11 12222221
Q ss_pred HHHHHHhhhcCCCC--cccCCCCCcCCCCCChHHHHHHHHHHHHHcccccceEEEeeccccccccCCceeeecCCCCCCC
Q psy12655 191 HLKKVINTKFGLDA--TAVGDEGGFAPNILDNKEGLRLIVEAIEKAGYTGKVEIGMDVAASEFFKEGQYDLDFKNPNSDK 268 (299)
Q Consensus 191 ~l~~~l~~k~G~~~--t~vgdeGgfap~~~~~e~aL~ll~eAi~~ag~~~~i~ialD~AAse~~~~g~Y~~~fk~~~~~~ 268 (299)
.+++.++ .|... ..+|. ++++-++.+...-+..| .++.|.+|+-
T Consensus 92 ~~~~~~~--~G~~~~KiKvg~---------~~~~d~~~v~~vr~~~g--~~~~l~vDan--------------------- 137 (265)
T cd03315 92 EARRALE--AGFRTFKLKVGR---------DPARDVAVVAALREAVG--DDAELRVDAN--------------------- 137 (265)
T ss_pred HHHHHHH--CCCCEEEEecCC---------CHHHHHHHHHHHHHhcC--CCCEEEEeCC---------------------
Confidence 2233332 24211 12331 23566666665555544 3678888861
Q ss_pred CCccCHHHHHHHHHHHHhcCCeeEeecCCC
Q psy12655 269 SQWLPADKLTALYQEFIKEYPIVSIEDPML 298 (299)
Q Consensus 269 ~~~~t~~elid~y~~l~~~yPIvsiEDp~~ 298 (299)
..+|.++.+++.+.| ++|+|.+||+|+.
T Consensus 138 -~~~~~~~a~~~~~~l-~~~~i~~iEeP~~ 165 (265)
T cd03315 138 -RGWTPKQAIRALRAL-EDLGLDYVEQPLP 165 (265)
T ss_pred -CCcCHHHHHHHHHHH-HhcCCCEEECCCC
Confidence 124556777766655 5688999999984
No 40
>PF05034 MAAL_N: Methylaspartate ammonia-lyase N-terminus; InterPro: IPR022665 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the N-terminal region of methylaspartate ammonia-lyase. This domain is structurally related to PF03952 from PFAM []. This domain is associated with the catalytic domain PF07476 from PFAM. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=94.60 E-value=0.16 Score=44.01 Aligned_cols=101 Identities=21% Similarity=0.251 Sum_probs=60.6
Q ss_pred eEEEEEEECCCce-EEEeecCCC--CcceeeeeeccCCcccccCccHHHHHHHHHHhHHHHHhcCCCCccchHHHHHHHH
Q psy12655 19 TVEVDLTTELGLF-RAAVPSGAS--TGIYEALELRDNDKAHYHGKGVTKAVGFINNDIAPALLKESFEVTQQKEIDEFMI 95 (299)
Q Consensus 19 Tvevev~~~~g~~-ra~~psGaS--~G~~Ea~elrd~~~~~~~Gkgv~~Av~~in~~i~p~Li~~g~~~~dQ~~ID~~L~ 95 (299)
+|-|.+++++|.+ ++-|-.--- .|-++.+-+ -..=+..|++.|+|.|+ |++.+.-++.=+.+-
T Consensus 52 sisV~l~L~dG~va~GDCaaVQYSGagGRDPLF~------------a~~~ip~ie~~v~p~L~--g~d~~~Fr~~a~~~d 117 (159)
T PF05034_consen 52 SISVMLVLEDGQVAYGDCAAVQYSGAGGRDPLFL------------AEDFIPVIEKEVAPRLV--GRDLSSFRENAEKFD 117 (159)
T ss_dssp EEEEEEEETTS-EEEEEE---TTTTSTTS-S---------------HHHHHHHHHHHTHHHHT--T-B-S-CHHHHHHHH
T ss_pred EEEEEEEeCCCCEEEeeehheeecccCCCCCccc------------HHHHHHHHHhhccHHHc--CCcHHHHHHHHHHHH
Confidence 6889999999987 554433211 133332222 23346778899999999 678777655444443
Q ss_pred hhcCCCCcccCCChhhHHHHHHHHHHHHHhcCCchHHHHHh
Q psy12655 96 KLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLYKHLAD 136 (299)
Q Consensus 96 ~lDgT~nks~lGaNailavSlA~akAaA~~~~~pLy~yi~~ 136 (299)
++ -+..+|..-.=.+||-|+..|+|++++.-.-+.|++
T Consensus 118 ~~---~~g~rlhtAiRYGvsQALL~A~A~a~~~tmaeVi~~ 155 (159)
T PF05034_consen 118 EL---VDGKRLHTAIRYGVSQALLDAAAKAQRTTMAEVIAE 155 (159)
T ss_dssp H----ETTEE--HHHHHHHHHHHHHHHHHHCTS-HHHHHHH
T ss_pred hc---ccCCcchhHHHHhHHHHHHHHHHHHcCCcHHHHHHH
Confidence 33 133478766669999999999999999887777764
No 41
>COG3799 Mal Methylaspartate ammonia-lyase [Amino acid transport and metabolism]
Probab=90.91 E-value=0.92 Score=43.53 Aligned_cols=106 Identities=21% Similarity=0.332 Sum_probs=63.8
Q ss_pred HHHHHHHHHhHHHHHhcCCCCccc----hHHHHHHHHhhcCCCCcccCCChhhHHHHHHHHHHHHHhcCCchHHHHHhhh
Q psy12655 63 TKAVGFINNDIAPALLKESFEVTQ----QKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLYKHLADLA 138 (299)
Q Consensus 63 ~~Av~~in~~i~p~Li~~g~~~~d----Q~~ID~~L~~lDgT~nks~lGaNailavSlA~akAaA~~~~~pLy~yi~~l~ 138 (299)
..-+..+|..+.|+|+ |.|+.- -+-++++ +|+ ..|--..=.+||-|+.+|+|...+.---+.+.+-.
T Consensus 87 ~~~~~~~~~~v~p~Lv--grDv~~~ldnA~vfe~l---~d~----~~LhtAvrYGvSQALl~Aaa~a~~tt~tevvcde~ 157 (410)
T COG3799 87 EHFIPFLNDHVKPLLV--GRDVDAFLDNARVFEKL---IDG----NLLHTAVRYGVSQALLDAAALATGTTKTEVVCDEW 157 (410)
T ss_pred hhhHHHHhhhhhhhhh--CccHHhhcchhHHhHhh---ccC----CcchHHHHhhHHHHHHHHHHHhhccchheeehhhh
Confidence 3446678999999999 566532 1222222 233 23444455899999999999999988777777655
Q ss_pred CCCccccccceEEeecCCcCC-CCcccceeEEEEecCCCC
Q psy12655 139 GNSNIILPVPAFNVINGGSHA-GNKLAMQEFMILPTGASS 177 (299)
Q Consensus 139 g~~~~~lP~P~~nvinGG~ha-~~~l~iQEfmiiP~ga~s 177 (299)
+.+..+-|+|+|---+.-..- -.++-++-+=++|.|-.+
T Consensus 158 ~lp~~te~vP~fgQSGd~R~~~vdkMiLK~vdVLPHgLiN 197 (410)
T COG3799 158 QLPRVTESVPLFGQSGDDRYIAVDKMILKGVDVLPHGLIN 197 (410)
T ss_pred CCCCccccccccccCcchhhhhHHHHHHhhcCccchhhhh
Confidence 555566777776322111111 013334555567766443
No 42
>PF01188 MR_MLE: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; InterPro: IPR013342 Mandelate racemase 5.1.2.2 from EC (MR) and muconate lactonising enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the C-terminal region of these proteins.; PDB: 3QLD_B 3CYJ_C 2QDD_B 3FVD_A 3H7V_A 2OZT_A 3NXL_A 1JDF_D 1JCT_B 1EC9_C ....
Probab=73.04 E-value=12 Score=27.27 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=18.5
Q ss_pred cCHHHHHHHHHHHHhcCCeeEeecCCC
Q psy12655 272 LPADKLTALYQEFIKEYPIVSIEDPML 298 (299)
Q Consensus 272 ~t~~elid~y~~l~~~yPIvsiEDp~~ 298 (299)
+|.++-+.+...|-+ | .+||+|+.
T Consensus 23 ~~~~~a~~~~~~l~~-~--~~iEeP~~ 46 (67)
T PF01188_consen 23 WTLEEAIRLARALED-Y--EWIEEPLP 46 (67)
T ss_dssp BSHHHHHHHHHHHGG-G--SEEESSSS
T ss_pred CCHHHHHHHHHHcCh-h--heeecCCC
Confidence 577887777777754 4 99999985
No 43
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=63.27 E-value=25 Score=32.36 Aligned_cols=54 Identities=17% Similarity=0.156 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHHcccccceEEEeeccccccccCCceeeecCCCCCCCCCccCHHHHHHHHHHHHhcCCeeEeecCCC
Q psy12655 220 NKEGLRLIVEAIEKAGYTGKVEIGMDVAASEFFKEGQYDLDFKNPNSDKSQWLPADKLTALYQEFIKEYPIVSIEDPML 298 (299)
Q Consensus 220 ~e~aL~ll~eAi~~ag~~~~i~ialD~AAse~~~~g~Y~~~fk~~~~~~~~~~t~~elid~y~~l~~~yPIvsiEDp~~ 298 (299)
+++-++.+...-+..| .++.|.+|+- ..+|.++-+.+.. .+++|+|.+||+|+.
T Consensus 110 ~~~d~~~v~~vr~~~g--~~~~l~vDaN----------------------~~w~~~~A~~~~~-~l~~~~i~~iEqP~~ 163 (263)
T cd03320 110 FEEDLARLRALREALP--ADAKLRLDAN----------------------GGWSLEEALAFLE-ALAAGRIEYIEQPLP 163 (263)
T ss_pred hHHHHHHHHHHHHHcC--CCCeEEEeCC----------------------CCCCHHHHHHHHH-hhcccCCceEECCCC
Confidence 3556666666655555 4688889961 1235556555444 446688899999983
No 44
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=60.01 E-value=29 Score=32.96 Aligned_cols=56 Identities=18% Similarity=0.197 Sum_probs=36.5
Q ss_pred ChHHHHHHHHHHHHHcccccceEEEeeccccccccCCceeeecCCCCCCCCCccCHHHHHHHHHHHHhc--CCeeEeecC
Q psy12655 219 DNKEGLRLIVEAIEKAGYTGKVEIGMDVAASEFFKEGQYDLDFKNPNSDKSQWLPADKLTALYQEFIKE--YPIVSIEDP 296 (299)
Q Consensus 219 ~~e~aL~ll~eAi~~ag~~~~i~ialD~AAse~~~~g~Y~~~fk~~~~~~~~~~t~~elid~y~~l~~~--yPIvsiEDp 296 (299)
++++-++.|...-+..| .++.|.+|+- ..+|.+|-+.+...|-+. |+|.+||+|
T Consensus 136 ~~~~d~~~v~~vr~~~g--~~~~l~vDaN----------------------~~w~~~~A~~~~~~l~~~~~~~i~~iEqP 191 (307)
T TIGR01927 136 ELAREGMLVNLLLEALP--DKAELRLDAN----------------------GGLSPDEAQQFLKALDPNLRGRIAFLEEP 191 (307)
T ss_pred ChHHHHHHHHHHHHHcC--CCCeEEEeCC----------------------CCCCHHHHHHHHHhcccccCCCceEEeCC
Confidence 34555666655555554 4688999961 235667766666666433 889999999
Q ss_pred CC
Q psy12655 297 ML 298 (299)
Q Consensus 297 ~~ 298 (299)
+.
T Consensus 192 ~~ 193 (307)
T TIGR01927 192 LP 193 (307)
T ss_pred CC
Confidence 84
No 45
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=59.71 E-value=34 Score=33.01 Aligned_cols=56 Identities=13% Similarity=0.151 Sum_probs=39.7
Q ss_pred ChHHHHHHHHHHHHHcccccceEEEeeccccccccCCceeeecCCCCCCCCCccCHHHHHHHHHHHHhcCCeeEeecCCC
Q psy12655 219 DNKEGLRLIVEAIEKAGYTGKVEIGMDVAASEFFKEGQYDLDFKNPNSDKSQWLPADKLTALYQEFIKEYPIVSIEDPML 298 (299)
Q Consensus 219 ~~e~aL~ll~eAi~~ag~~~~i~ialD~AAse~~~~g~Y~~~fk~~~~~~~~~~t~~elid~y~~l~~~yPIvsiEDp~~ 298 (299)
+.++-++.+...-+..| +++.|.+|+- ..+|.++-+.+...|-..|+|.+||+|+.
T Consensus 116 ~~~~Di~rv~avRe~lG--pd~~LrvDAN----------------------~~ws~~~Ai~~~~~L~e~~~l~~iEqP~~ 171 (327)
T PRK02901 116 TLADDVARVNAVRDALG--PDGRVRVDAN----------------------GGWSVDEAVAAARALDADGPLEYVEQPCA 171 (327)
T ss_pred CHHHHHHHHHHHHHhcC--CCCEEEEECC----------------------CCCCHHHHHHHHHHhhhccCceEEecCCC
Confidence 45666676666555555 4688888851 12566787777777766799999999985
No 46
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=59.04 E-value=37 Score=32.42 Aligned_cols=56 Identities=16% Similarity=0.197 Sum_probs=36.8
Q ss_pred ChHHHHHHHHHHHHHcccccceEEEeeccccccccCCceeeecCCCCCCCCCccCHHHHHHHHHHHHh--cCCeeEeecC
Q psy12655 219 DNKEGLRLIVEAIEKAGYTGKVEIGMDVAASEFFKEGQYDLDFKNPNSDKSQWLPADKLTALYQEFIK--EYPIVSIEDP 296 (299)
Q Consensus 219 ~~e~aL~ll~eAi~~ag~~~~i~ialD~AAse~~~~g~Y~~~fk~~~~~~~~~~t~~elid~y~~l~~--~yPIvsiEDp 296 (299)
++++-++.|...-+..| .++.|.+|+- +.+|.++-+.+...|-+ .|.|.+||+|
T Consensus 145 ~~~~d~~~v~air~~~g--~~~~l~vDaN----------------------~~w~~~~A~~~~~~l~~l~~~~i~~iEqP 200 (320)
T PRK02714 145 PLEQELKIFEQLLERLP--AGAKLRLDAN----------------------GGLSLEEAKRWLQLCDRRLSGKIEFIEQP 200 (320)
T ss_pred ChHHHHHHHHHHHHhcC--CCCEEEEECC----------------------CCCCHHHHHHHHHHHhhccCCCccEEECC
Confidence 44556666666555555 4688888861 22456676666666644 3889999999
Q ss_pred CC
Q psy12655 297 ML 298 (299)
Q Consensus 297 ~~ 298 (299)
+.
T Consensus 201 ~~ 202 (320)
T PRK02714 201 LP 202 (320)
T ss_pred CC
Confidence 84
No 47
>PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress. Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=55.06 E-value=17 Score=28.15 Aligned_cols=51 Identities=18% Similarity=0.356 Sum_probs=34.8
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCCCCCcCCCCCChHHHHHHH
Q psy12655 172 PTGASSFSEAMKIGSEVYHHLKKVINTKFGLDATAVGDEGGFAPNILDNKEGLRLI 227 (299)
Q Consensus 172 P~ga~s~~eal~~~~ev~~~l~~~l~~k~G~~~t~vgdeGgfap~~~~~e~aL~ll 227 (299)
|++..++.+.+.+....-++-...|+ ..|....-.+..||+.|. +++.+++
T Consensus 23 PVgSk~ia~~l~~s~aTIRN~M~~Le-~lGlve~~p~~s~GriPT----~~aYr~~ 73 (78)
T PF03444_consen 23 PVGSKTIAEELGRSPATIRNEMADLE-ELGLVESQPHPSGGRIPT----DKAYRAL 73 (78)
T ss_pred CcCHHHHHHHHCCChHHHHHHHHHHH-HCCCccCCCCCCCCCCcC----HHHHHHH
Confidence 66777777777666666666666676 568643346789999998 5555554
No 48
>PF06545 DUF1116: Protein of unknown function (DUF1116); InterPro: IPR009499 This family contains hypothetical bacterial proteins of unknown function.; PDB: 3CLQ_A.
Probab=52.27 E-value=39 Score=31.02 Aligned_cols=61 Identities=23% Similarity=0.432 Sum_probs=36.0
Q ss_pred cccCccHHHHHHHHHHhHHHHHhcCCCCccchHHHHHHHHhhcCCCCcccCCChhhHHHHHHHHHHHHHhcC
Q psy12655 56 HYHGKGVTKAVGFINNDIAPALLKESFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKG 127 (299)
Q Consensus 56 ~~~Gkgv~~Av~~in~~i~p~Li~~g~~~~dQ~~ID~~L~~lDgT~nks~lGaNailavSlA~akAaA~~~~ 127 (299)
.++.+..-. -..+-..|+|.|+..+.+..+.+++.++|. +++ .--|-+|||.||+......
T Consensus 98 E~H~Rn~Aa-t~ll~~~L~P~l~~~~~~~~~~~~v~~fl~---~nd-------~FFLnl~MAa~K~~~daa~ 158 (216)
T PF06545_consen 98 ECHNRNIAA-TSLLLRELAPALVDTDFPKDDKAEVLEFLA---SND-------HFFLNLSMAACKAMMDAAR 158 (216)
T ss_dssp -SSS--HHH-HHHHHHHHHHHHHTSSS-HHHHHHHHHHHT---S-T-------TTTHHHHHHHHHHHHHHTS
T ss_pred hhhhHhHHH-HHHHHHHHHHHHhccCCChHHHHHHHHHHh---cCC-------ceeehHHHHHHHHHHHHhc
Confidence 356555443 344555699999854454555555555554 332 2568899999998776553
No 49
>PRK10857 DNA-binding transcriptional regulator IscR; Provisional
Probab=34.23 E-value=31 Score=29.95 Aligned_cols=59 Identities=19% Similarity=0.244 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCCCCCcCCCCCChHHHHHHHHHHHHH
Q psy12655 174 GASSFSEAMKIGSEVYHHLKKVINTKFGLDATAVGDEGGFAPNILDNKEGLRLIVEAIEK 233 (299)
Q Consensus 174 ga~s~~eal~~~~ev~~~l~~~l~~k~G~~~t~vgdeGgfap~~~~~e~aL~ll~eAi~~ 233 (299)
....+.+.+.....+-.++-+.|+ +.|......|..|||.+.-+-.+-.|-=|.+|++.
T Consensus 27 s~~eIA~~~~ip~~~l~kIl~~L~-~aGLv~s~rG~~GGy~Lar~p~~Itl~dIl~aieg 85 (164)
T PRK10857 27 PLADISERQGISLSYLEQLFSRLR-KNGLVSSVRGPGGGYLLGKDASSIAVGEVISAVDE 85 (164)
T ss_pred cHHHHHHHHCcCHHHHHHHHHHHH-HCCCEEeCCCCCCCeeccCCHHHCCHHHHHHHHcC
Confidence 344566666666555555555666 45875556799999998866444456666667763
No 50
>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator). This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.
Probab=33.55 E-value=37 Score=27.50 Aligned_cols=58 Identities=17% Similarity=0.271 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCCCCCcCCCCCChHHHHHHHHHHHHHc
Q psy12655 176 SSFSEAMKIGSEVYHHLKKVINTKFGLDATAVGDEGGFAPNILDNKEGLRLIVEAIEKA 234 (299)
Q Consensus 176 ~s~~eal~~~~ev~~~l~~~l~~k~G~~~t~vgdeGgfap~~~~~e~aL~ll~eAi~~a 234 (299)
..+.+.+......-+++-+.|. +.|......|..|||.+.-+-.+-.+.-|.+|++..
T Consensus 29 ~eia~~~~i~~~~v~~il~~L~-~~gli~~~~g~~ggy~l~~~~~~itl~~I~~~~e~~ 86 (132)
T TIGR00738 29 KEIAERQGISRSYLEKILRTLR-RAGLVESVRGPGGGYRLARPPEEITVGDVVRAVEGP 86 (132)
T ss_pred HHHHHHHCcCHHHHHHHHHHHH-HCCcEEeccCCCCCccCCCCHHHCCHHHHHHHHcCc
Confidence 3344555544444444444444 347543334888999998554344476677787654
No 51
>COG0245 IspF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Lipid metabolism]
Probab=32.57 E-value=1.1e+02 Score=26.70 Aligned_cols=55 Identities=31% Similarity=0.501 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhhhcCCCCcccCCCCCcCCCCC------ChHHHHHHHHHHHHHcccc-cceEEEee
Q psy12655 186 SEVYHHLKKVINTKFGLDATAVGDEGGFAPNIL------DNKEGLRLIVEAIEKAGYT-GKVEIGMD 245 (299)
Q Consensus 186 ~ev~~~l~~~l~~k~G~~~t~vgdeGgfap~~~------~~e~aL~ll~eAi~~ag~~-~~i~ialD 245 (299)
=-+.|++...|- | .++.||-|.|.|+.+ +..+-|+-..+-+++.||+ .++.+-+=
T Consensus 38 DVllHAi~DAll---g--A~glGDIG~~Fp~~d~~~kgadS~~lL~~~~~~v~~~g~~i~Nvd~tii 99 (159)
T COG0245 38 DVLLHALTDALL---G--AAGLGDIGKHFPDTDPRWKGADSRILLKEAVELVREKGYRIGNVDITII 99 (159)
T ss_pred HHHHHHHHHHHH---H--hhccCcchhcCCCCCcccCCCchHHHHHHHHHHHHHhCcEEEeEEEEEE
Confidence 456788888876 4 689999999999875 2233344444556667777 45544443
No 52
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=32.16 E-value=55 Score=22.04 Aligned_cols=16 Identities=31% Similarity=0.158 Sum_probs=14.4
Q ss_pred CChHHHHHHHHHHHHH
Q psy12655 218 LDNKEGLRLIVEAIEK 233 (299)
Q Consensus 218 ~~~e~aL~ll~eAi~~ 233 (299)
+|.+||++.+++|++.
T Consensus 29 ~t~eea~~~~~eal~~ 44 (48)
T PF03681_consen 29 DTLEEALENAKEALEL 44 (48)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 6899999999999875
No 53
>COG1503 eRF1 Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis]
Probab=31.89 E-value=19 Score=36.06 Aligned_cols=28 Identities=18% Similarity=0.152 Sum_probs=24.1
Q ss_pred cCHHHHHHHHHHHHhcCC--eeEeecCCCC
Q psy12655 272 LPADKLTALYQEFIKEYP--IVSIEDPMLR 299 (299)
Q Consensus 272 ~t~~elid~y~~l~~~yP--IvsiEDp~~e 299 (299)
.....++|++.++..+++ +..|.|+++|
T Consensus 361 v~~~d~vd~l~e~a~~~Ga~ve~is~~~~e 390 (411)
T COG1503 361 VEVSDLVDELAELAEESGAKVEIISDDTDE 390 (411)
T ss_pred hhhhhHHHHHHHHHHhcCCeEEEecCchHH
Confidence 356888999999999999 8899998875
No 54
>PF10231 DUF2315: Uncharacterised conserved protein (DUF2315); InterPro: IPR018796 This entry consists of small conserved proteins found from worms to humans. Their function is not known.
Probab=31.54 E-value=48 Score=27.85 Aligned_cols=19 Identities=37% Similarity=0.735 Sum_probs=16.7
Q ss_pred CCccCHHHHHHHHHHHHhc
Q psy12655 269 SQWLPADKLTALYQEFIKE 287 (299)
Q Consensus 269 ~~~~t~~elid~y~~l~~~ 287 (299)
...++++||.++|++++++
T Consensus 74 ~~~l~a~~mseFYk~FL~~ 92 (126)
T PF10231_consen 74 KQELSADEMSEFYKEFLDK 92 (126)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 4578999999999999876
No 55
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=30.96 E-value=47 Score=19.49 Aligned_cols=17 Identities=35% Similarity=0.675 Sum_probs=14.8
Q ss_pred CHHHHHHHHHHHHhcCC
Q psy12655 273 PADKLTALYQEFIKEYP 289 (299)
Q Consensus 273 t~~elid~y~~l~~~yP 289 (299)
..++-+++|.+++++||
T Consensus 15 ~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 15 DYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHCc
Confidence 35788999999999999
No 56
>cd00554 MECDP_synthase MECDP_synthase (2-C-methyl-D-erythritol-2,4-cyclodiphosphate synthase), encoded by the ispF gene, catalyzes the formation of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MEC) in the non-mevalonate deoxyxylulose (DOXP) pathway for isoprenoid biosynthesis. This pathway is present in bacteria, plants and some protozoa but is distinct from that used by mammals and Archaea. MECDP_synthase forms a homotrimer, carrying three active sites, each of which is formed in a cleft between pairs of subunits.
Probab=30.71 E-value=1.4e+02 Score=25.97 Aligned_cols=47 Identities=30% Similarity=0.479 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhhhcCCCCcccCCCCCcCCCCCC---hHHHHHHHHHH---HHHcccc
Q psy12655 186 SEVYHHLKKVINTKFGLDATAVGDEGGFAPNILD---NKEGLRLIVEA---IEKAGYT 237 (299)
Q Consensus 186 ~ev~~~l~~~l~~k~G~~~t~vgdeGgfap~~~~---~e~aL~ll~eA---i~~ag~~ 237 (299)
=-+.|++...|- | .++.||-|-|.|+-+. .-....+|+++ +++.||+
T Consensus 37 DVl~HAl~DAlL---G--A~glgDIG~~Fp~~d~~~k~~~S~~lL~~~~~~~~~~g~~ 89 (153)
T cd00554 37 DVLLHALTDALL---G--AAGLGDIGEHFPDTDPKWKGADSRILLEEALKLIREKGYE 89 (153)
T ss_pred HHHHHHHHHHHH---H--HccCCcccccCCCCChhhCCCCHHHHHHHHHHHHHHcCCE
Confidence 456788888876 5 6899999999999762 23445555555 4566776
No 57
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.
Probab=30.37 E-value=32 Score=28.52 Aligned_cols=58 Identities=21% Similarity=0.282 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCCCCCcCCCCCChHHHHHHHHHHHHH
Q psy12655 175 ASSFSEAMKIGSEVYHHLKKVINTKFGLDATAVGDEGGFAPNILDNKEGLRLIVEAIEK 233 (299)
Q Consensus 175 a~s~~eal~~~~ev~~~l~~~l~~k~G~~~t~vgdeGgfap~~~~~e~aL~ll~eAi~~ 233 (299)
...+.+.+.....+-.++-+.|. +.|......|..|||.+.-+-.+-.|-=|.+|++.
T Consensus 28 ~~~ia~~~~ip~~~l~kil~~L~-~~glv~s~~G~~Ggy~l~~~~~~Itl~dv~~a~eg 85 (135)
T TIGR02010 28 LADISERQGISLSYLEQLFAKLR-KAGLVKSVRGPGGGYQLGRPAEDISVADIIDAVDE 85 (135)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHH-HCCceEEEeCCCCCEeccCCHHHCcHHHHHHHhCC
Confidence 34455666655555555555555 44765555688999998865444445556667753
No 58
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=29.70 E-value=89 Score=30.63 Aligned_cols=105 Identities=21% Similarity=0.293 Sum_probs=62.6
Q ss_pred HHHHHHHHhcCCchHHHHHhhhCCCccccccceEEeecCC-cCC--CCcccceeEEEEecCCCCHHHHHHHHHHHHHHHH
Q psy12655 117 AVAKAGAAKKGVPLYKHLADLAGNSNIILPVPAFNVINGG-SHA--GNKLAMQEFMILPTGASSFSEAMKIGSEVYHHLK 193 (299)
Q Consensus 117 A~akAaA~~~~~pLy~yi~~l~g~~~~~lP~P~~nvinGG-~ha--~~~l~iQEfmiiP~ga~s~~eal~~~~ev~~~l~ 193 (299)
+.+++.|...++|..-||- ......++.-. -.|.-| +|. +++.-|..+||= -...+|+|.++...++-...+
T Consensus 75 ~~~~~~A~~~~VPV~lHLD---H~~~~~~e~i~-~ai~~G~~~~~~~~~~~FsSVMiD-gS~l~~eeNi~~T~~vve~Ah 149 (340)
T cd00453 75 HHVHQMAEHYGVPVILHTD---HCAKKLLPWID-GLLDAGEKHFAATGKPLFSSHMID-LSEESLQENIEICSKYLERMS 149 (340)
T ss_pred HHHHHHHHHCCCCEEEEcC---CCCCCCHHHHH-HHHHcCCccccccCCCCceeEEec-CCCCCHHHHHHHHHHHHHHHH
Confidence 4677888888999988885 22211233322 233444 555 345559999994 456899999988766654443
Q ss_pred HH---HhhhcCCCCcccCCCCC---c----CCCCCChHHHHHHHHH
Q psy12655 194 KV---INTKFGLDATAVGDEGG---F----APNILDNKEGLRLIVE 229 (299)
Q Consensus 194 ~~---l~~k~G~~~t~vgdeGg---f----ap~~~~~e~aL~ll~e 229 (299)
.. ++...|.. + |.|.| . .--+.++|||.+++.+
T Consensus 150 ~~gi~VEaElG~i--g-G~ed~~~~~~~~~~~~yT~Peea~~Fv~~ 192 (340)
T cd00453 150 KIGMTLEIELGCT--G-GEEDGVDNSHMDASALYTQPEDVDYAYTE 192 (340)
T ss_pred HcCCEEEEEEEec--C-CccCCcccccccccccCCCHHHHHHHHHH
Confidence 22 22234432 1 34434 1 1226789999998864
No 59
>TIGR00151 ispF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase. Members of this protein family are 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, the IspF protein of the deoxyxylulose (non-mevalonate) pathway of IPP biosynthesis. This protein occurs as an IspDF bifunctional fusion protein in about 20 percent of bacterial genomes.
Probab=27.69 E-value=1.7e+02 Score=25.49 Aligned_cols=54 Identities=28% Similarity=0.508 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhhhcCCCCcccCCCCCcCCCCC---ChHHHHHHHHHHH---HHcccc-cceEEEe
Q psy12655 186 SEVYHHLKKVINTKFGLDATAVGDEGGFAPNIL---DNKEGLRLIVEAI---EKAGYT-GKVEIGM 244 (299)
Q Consensus 186 ~ev~~~l~~~l~~k~G~~~t~vgdeGgfap~~~---~~e~aL~ll~eAi---~~ag~~-~~i~ial 244 (299)
=-+.|++...|- | .++.||-|-|.|+-+ ..-....+|++++ ++.||+ .++.+-|
T Consensus 37 DVl~HAi~DAlL---G--A~glgDIG~~Fpdtd~~~k~~~S~~lL~~~~~~~~~~g~~i~niD~ti 97 (155)
T TIGR00151 37 DVLLHALTDALL---G--ALGLGDIGKHFPDTDPRWKGADSRVLLRHAVALIKEKGYRIGNVDITI 97 (155)
T ss_pred HHHHHHHHHHHH---H--HccCCcCcccCCCCChhhCCCCHHHHHHHHHHHHHHcCCEEEEEEEEE
Confidence 456788888876 5 689999999999965 2233455666554 466777 4444333
No 60
>PF14483 Cut8_M: Cut8 dimerisation domain; PDB: 3Q5W_A 3Q5X_A.
Probab=27.39 E-value=63 Score=21.43 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=16.8
Q ss_pred ccCHHHHHHHHHHHHhcCC
Q psy12655 271 WLPADKLTALYQEFIKEYP 289 (299)
Q Consensus 271 ~~t~~elid~y~~l~~~yP 289 (299)
.+|.++|.....++|+++|
T Consensus 9 ~Ld~~qL~~lL~~l~~~HP 27 (38)
T PF14483_consen 9 TLDKDQLQSLLQSLCERHP 27 (38)
T ss_dssp TS-HHHHHHHHHHHHHHST
T ss_pred HcCHHHHHHHHHHHHHhCh
Confidence 4789999999999999999
No 61
>KOG4094|consensus
Probab=26.93 E-value=51 Score=28.69 Aligned_cols=21 Identities=14% Similarity=0.631 Sum_probs=17.5
Q ss_pred CCCCccCHHHHHHHHHHHHhc
Q psy12655 267 DKSQWLPADKLTALYQEFIKE 287 (299)
Q Consensus 267 ~~~~~~t~~elid~y~~l~~~ 287 (299)
+....++++||.++|++++++
T Consensus 119 G~~~~vsA~ems~FYk~FL~k 139 (178)
T KOG4094|consen 119 GRLEHVSANEMSEFYKDFLNK 139 (178)
T ss_pred ccccccCHHHHHHHHHHHHhh
Confidence 334578999999999999886
No 62
>PF08013 Tagatose_6_P_K: Tagatose 6 phosphate kinase; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases [, ]. However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity []. It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ [] and other members of this family turned out to be erroneous [, ].; GO: 0019402 galactitol metabolic process; PDB: 2FIQ_A 3TXV_A.
Probab=25.31 E-value=2.7e+02 Score=28.19 Aligned_cols=66 Identities=26% Similarity=0.496 Sum_probs=44.1
Q ss_pred CcccCCCCCcCCCCCChHHHHHHHHHHHHHcccc-cceEEEeeccccccccCCceeeecCCCCCCCCCccCHHHHHHHHH
Q psy12655 204 ATAVGDEGGFAPNILDNKEGLRLIVEAIEKAGYT-GKVEIGMDVAASEFFKEGQYDLDFKNPNSDKSQWLPADKLTALYQ 282 (299)
Q Consensus 204 ~t~vgdeGgfap~~~~~e~aL~ll~eAi~~ag~~-~~i~ialD~AAse~~~~g~Y~~~fk~~~~~~~~~~t~~elid~y~ 282 (299)
...|...|||. .+ ++.+.-+++.+-.++.|+. ..|.+|-|= +. | +.-+.+..+|=++.-+
T Consensus 50 ~NQVnq~GGYT-Gm-tP~dF~~~V~~iA~~~g~~~~~iiLGGDH------------LG---P--~~w~~lpaeeAM~~A~ 110 (424)
T PF08013_consen 50 SNQVNQFGGYT-GM-TPADFRDFVREIADEVGFPRDRIILGGDH------------LG---P--NPWQHLPAEEAMAKAK 110 (424)
T ss_dssp TTTCSTT-TTT-TB--HHHHHHHHHHHHHHCT--GGGEEEEEEE------------ES---S--CCCTTSBHHHHHHHHH
T ss_pred cccccccCCcC-CC-CHHHHHHHHHHHHHHcCCchhhEEecCCC------------CC---c--ccccCCCHHHHHHHHH
Confidence 34789999999 55 8899999999999999999 469999883 31 1 1223455666666666
Q ss_pred HHHhcC
Q psy12655 283 EFIKEY 288 (299)
Q Consensus 283 ~l~~~y 288 (299)
+++..|
T Consensus 111 ~li~ay 116 (424)
T PF08013_consen 111 ELIRAY 116 (424)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666544
No 63
>PF09876 DUF2103: Predicted metal-binding protein (DUF2103); InterPro: IPR018664 This family of various putative metal binding prokaryotic proteins has no known function.
Probab=24.28 E-value=3.4e+02 Score=22.09 Aligned_cols=35 Identities=26% Similarity=0.289 Sum_probs=26.0
Q ss_pred CCeeEEEEEEECCCceEEEeecCCCCcceeeeeeccC
Q psy12655 16 GNPTVEVDLTTELGLFRAAVPSGASTGIYEALELRDN 52 (299)
Q Consensus 16 G~pTvevev~~~~g~~ra~~psGaS~G~~Ea~elrd~ 52 (299)
|...+.|..-+..|.++..+-+|.|. .|++...|-
T Consensus 52 ~gl~lkvt~~~~~Gn~Kllar~G~Sv--QEvfVVT~~ 86 (103)
T PF09876_consen 52 GGLRLKVTRPTRGGNFKLLARSGSSV--QEVFVVTTL 86 (103)
T ss_pred CCeEEEEEEecCCCcEEEEEecCCee--EEEEEEeeC
Confidence 44777778888889899999988654 677766554
No 64
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=23.39 E-value=2.5e+02 Score=27.31 Aligned_cols=61 Identities=15% Similarity=0.284 Sum_probs=48.2
Q ss_pred ceeEEEEecCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCCCCCcCCCCCChHHHHHHHHHHHHHc
Q psy12655 165 MQEFMILPTGASSFSEAMKIGSEVYHHLKKVINTKFGLDATAVGDEGGFAPNILDNKEGLRLIVEAIEKA 234 (299)
Q Consensus 165 iQEfmiiP~ga~s~~eal~~~~ev~~~l~~~l~~k~G~~~t~vgdeGgfap~~~~~e~aL~ll~eAi~~a 234 (299)
.+.++++|.|. ..|-++...|+-++.+.+..+. |. ..=-+.|.+.+..+-+++|.+.+++.
T Consensus 257 ~k~iiv~pigF--vsDhlETL~Eid~e~~e~~~~~-Gg------~~y~rip~lN~~p~fi~~la~lv~~~ 317 (320)
T COG0276 257 VKKIIVVPIGF--VSDHLETLYEIDHEYRELAEEA-GG------KKYVRIPCLNDSPEFIDALADLVREL 317 (320)
T ss_pred CCeEEEECCch--hhhhHHHHHHHHHHHHHHHHHh-CC------ccEEecCCCCCCHHHHHHHHHHHHHH
Confidence 56799999988 4588999999999999988754 41 12235799999999999999988763
No 65
>PRK00084 ispF 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed
Probab=23.36 E-value=1.9e+02 Score=25.38 Aligned_cols=54 Identities=28% Similarity=0.473 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhhhcCCCCcccCCCCCcCCCCC---ChHHHHHHHHHHH---HHcccc-cceEEEe
Q psy12655 186 SEVYHHLKKVINTKFGLDATAVGDEGGFAPNIL---DNKEGLRLIVEAI---EKAGYT-GKVEIGM 244 (299)
Q Consensus 186 ~ev~~~l~~~l~~k~G~~~t~vgdeGgfap~~~---~~e~aL~ll~eAi---~~ag~~-~~i~ial 244 (299)
=-+.|++...|- | .++.||-|-|.|+-+ ..-....+|++++ ++.||+ .++.+-|
T Consensus 40 DVl~HAi~DAlL---G--A~glgDIG~~Fp~td~~~kg~~S~~lL~~~~~~~~~~g~~i~niD~ti 100 (159)
T PRK00084 40 DVLLHAICDALL---G--AAALGDIGKHFPDTDPAFKGADSRVLLREVARLLRAKGYRIGNVDITI 100 (159)
T ss_pred HHHHHHHHHHHH---H--HccCCchhhhCCCCChhhCCCCHHHHHHHHHHHHHHcCCEEEEEEEEE
Confidence 557789988876 5 578999999999965 2233455555554 456776 3443333
No 66
>PF02542 YgbB: YgbB family; InterPro: IPR003526 MECDP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate) synthetase, an enzyme in the non-mevalonate pathway of isoprenoid synthesis, isoprenoids being essential in all organisms. Isoprenoids can also be synthesized through the mevalonate pathway. The non-mevolante route is used by many bacteria and human pathogens, including Mycobacterium tuberculosis and Plasmodium falciparum. This route appears to involve seven enzymes. MECDP synthetase catalyses the intramolecular attack by a phosphate group on a diphosphate, with cytidine monophosphate (CMP) acting as the leaving group to give the cyclic diphosphate product MEDCP. The enzyme is a trimer with three active sites shared between adjacent copies of the protein. The enzyme also has two metal binding sites, the metals playing key roles in catalysis[]. A number of proteins from eukaryotes and prokaryotes share this common N-terminal signature and appear to be involved in terpenoid biosynthesis. The YgbB protein is a putative enzyme of this type [].; GO: 0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity, 0016114 terpenoid biosynthetic process; PDB: 3T80_B 3GHZ_A 2PMP_A 3F6M_A 3FPI_A 3RE3_A 1T0A_C 1W57_A 1W55_A 3B6N_A ....
Probab=22.64 E-value=91 Score=27.22 Aligned_cols=53 Identities=23% Similarity=0.431 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhhhcCCCCcccCCCCCcCCCCC---ChHHHHHHHH---HHHHHcccc-cceEEEe
Q psy12655 187 EVYHHLKKVINTKFGLDATAVGDEGGFAPNIL---DNKEGLRLIV---EAIEKAGYT-GKVEIGM 244 (299)
Q Consensus 187 ev~~~l~~~l~~k~G~~~t~vgdeGgfap~~~---~~e~aL~ll~---eAi~~ag~~-~~i~ial 244 (299)
-+.|++...|- | .++.||-|-|.|+-+ ..-+...+|+ +-+++.||+ .+|.+-+
T Consensus 39 Vl~HAi~DAlL---G--A~glgDIG~~Fpd~d~~~k~~~S~~lL~~~~~~~~~~g~~i~niD~ti 98 (157)
T PF02542_consen 39 VLLHAIIDALL---G--AAGLGDIGTHFPDTDPKYKGADSRILLKEVVELLREKGYRIVNIDITI 98 (157)
T ss_dssp HHHHHHHHHHH---H--HTTS-THHHHSTTTSGGGTTCSHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred HHHHHHHHHHH---H--hccCCcccccCCCCChhhCCCCHHHHHHHHHHHHHHcCcEEEEEEEEE
Confidence 45688888776 4 578999999999976 2233445554 455666777 4444433
No 67
>PF03828 PAP_assoc: Cid1 family poly A polymerase; InterPro: IPR002058 These PAP/25A associated domains are found in uncharacterised eukaryotic proteins, a number of which are described as 'topoisomerase 1-related' though they appear to have little or no homology to topoisomerase 1. The signatures that define this group of sequences often occur towards the C terminus after the PAP/25A core domain IPR001201 from INTERPRO.; PDB: 2B4V_A 2B56_A 2B51_A 4EP7_B 2NOM_B 2Q0G_B 2Q0D_B 2Q0C_A 2Q0F_A 2Q0E_A ....
Probab=21.09 E-value=39 Score=23.60 Aligned_cols=11 Identities=36% Similarity=0.434 Sum_probs=8.9
Q ss_pred CCeeEeecCCC
Q psy12655 288 YPIVSIEDPML 298 (299)
Q Consensus 288 yPIvsiEDp~~ 298 (299)
...+.|||||+
T Consensus 47 ~~~l~IeDP~~ 57 (60)
T PF03828_consen 47 KKRLCIEDPFD 57 (60)
T ss_dssp CSSSEBBESSS
T ss_pred CCeEEEECCCC
Confidence 34789999996
No 68
>COG2088 SpoVG Uncharacterized protein, involved in the regulation of septum location [Cell envelope biogenesis, outer membrane]
Probab=20.99 E-value=1.9e+02 Score=23.03 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=24.5
Q ss_pred CceeeEEEeEEeCCCCCeeEEEEEEECCC
Q psy12655 1 MPISKIHARQIFDSRGNPTVEVDLTTELG 29 (299)
Q Consensus 1 ~~I~~v~ar~ilDsrG~pTvevev~~~~g 29 (299)
|+|++|+-|+| |+.|+---=|.|.+++-
T Consensus 1 m~iTdVRirkv-~~dgrmkA~vsvT~D~e 28 (95)
T COG2088 1 MEITDVRIRKV-DTDGRMKAYVSVTLDNE 28 (95)
T ss_pred CcceeEEEEEe-cCCCcEEEEEEEEecce
Confidence 78999999998 88998888888888763
No 69
>smart00309 PAH Pancreatic hormones / neuropeptide F / peptide YY family. Pancreatic hormone is a regulator of pancreatic and gastrointestinal functions.
Probab=20.01 E-value=1.9e+02 Score=19.08 Aligned_cols=23 Identities=4% Similarity=-0.029 Sum_probs=17.6
Q ss_pred CCCCccCHHHHHHHHHHHHhcCC
Q psy12655 267 DKSQWLPADKLTALYQEFIKEYP 289 (299)
Q Consensus 267 ~~~~~~t~~elid~y~~l~~~yP 289 (299)
.++...|++||..||..|.+=+-
T Consensus 7 ~Pg~~a~~e~l~~Y~~~L~~Yin 29 (36)
T smart00309 7 RPGDDASPEDLRQYLAALREYIN 29 (36)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHH
Confidence 35567899999999999876443
Done!