RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12655
(299 letters)
>2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A
{Saccharomyces cerevisiae} SCOP: c.1.11.1 d.54.1.1 PDB:
1ebg_A 1ebh_A* 1one_A* 2one_A* 1p48_A* 1p43_A* 1l8p_A
4enl_A 1nel_A 1els_A 3enl_A 5enl_A* 6enl_A 7enl_A*
2al2_A* 2al2_B* 2xh7_A* 2xgz_A* 2xh2_A* 2xh4_A* ...
Length = 436
Score = 573 bits (1479), Expect = 0.0
Identities = 187/297 (62%), Positives = 236/297 (79%), Gaps = 2/297 (0%)
Query: 3 ISKIHARQIFDSRGNPTVEVDLTTELGLFRAAVPSGASTGIYEALELRDNDKAHYHGKGV 62
+SK++AR ++DSRGNPTVEV+LTTE G+FR+ VPSGASTG++EALE+RD DK+ + GKGV
Sbjct: 2 VSKVYARSVYDSRGNPTVEVELTTEKGVFRSIVPSGASTGVHEALEMRDGDKSKWMGKGV 61
Query: 63 TKAVGFINNDIAPALLKESFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAG 122
AV +N+ IAPA +K + +V QK +D+F+I LDGT NKSK GANAILGVSLA ++A
Sbjct: 62 LHAVKNVNDVIAPAFVKANIDVKDQKAVDDFLISLDGTANKSKLGANAILGVSLAASRAA 121
Query: 123 AAKKGVPLYKHLADLAGN--SNIILPVPAFNVINGGSHAGNKLAMQEFMILPTGASSFSE 180
AA+K VPLYKHLADL+ + S +LPVP NV+NGGSHAG LA+QEFMI PTGA +F+E
Sbjct: 122 AAEKNVPLYKHLADLSKSKTSPYVLPVPFLNVLNGGSHAGGALALQEFMIAPTGAKTFAE 181
Query: 181 AMKIGSEVYHHLKKVINTKFGLDATAVGDEGGFAPNILDNKEGLRLIVEAIEKAGYTGKV 240
A++IGSEVYH+LK + ++G A VGDEGG APNI +E L LIV+AI+ AG+ GKV
Sbjct: 182 ALRIGSEVYHNLKSLTKKRYGASAGNVGDEGGVAPNIQTAEEALDLIVDAIKAAGHDGKV 241
Query: 241 EIGMDVAASEFFKEGQYDLDFKNPNSDKSQWLPADKLTALYQEFIKEYPIVSIEDPM 297
+IG+D A+SEFFK+G+YDLDFKNPNSDKS+WL +L LY +K YPIVSIEDP
Sbjct: 242 KIGLDCASSEFFKDGKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPIVSIEDPF 298
>2akz_A Gamma enolase, neural; fluoride inhibition, negative cooperativity,
glycolysis, , isothermal titration calorimetry, lyase;
1.36A {Homo sapiens} SCOP: c.1.11.1 d.54.1.1 PDB: 2akm_A
1te6_A 2psn_A 3b97_A 2xsx_A 1pdz_A 1pdy_A
Length = 439
Score = 572 bits (1476), Expect = 0.0
Identities = 209/295 (70%), Positives = 249/295 (84%), Gaps = 1/295 (0%)
Query: 3 ISKIHARQIFDSRGNPTVEVDLTTELGLFRAAVPSGASTGIYEALELRDNDKAHYHGKGV 62
I KI AR+I DSRGNPTVEVDL T GLFRAAVPSGASTGIYEALELRD DK Y GKGV
Sbjct: 2 IEKIWAREILDSRGNPTVEVDLYTAKGLFRAAVPSGASTGIYEALELRDGDKQRYLGKGV 61
Query: 63 TKAVGFINNDIAPALLKESFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAG 122
KAV IN+ IAPAL+ V +Q+++D M++LDGTENKSKFGANAILGVSLAV KAG
Sbjct: 62 LKAVDHINSTIAPALISSGLSVVEQEKLDNLMLELDGTENKSKFGANAILGVSLAVCKAG 121
Query: 123 AAKKGVPLYKHLADLAGNSNIILPVPAFNVINGGSHAGNKLAMQEFMILPTGASSFSEAM 182
AA++ +PLY+H+A LAGNS++ILPVPAFNVINGGSHAGNKLAMQEFMILP GA SF +AM
Sbjct: 122 AAERELPLYRHIAQLAGNSDLILPVPAFNVINGGSHAGNKLAMQEFMILPVGAESFRDAM 181
Query: 183 KIGSEVYHHLKKVINTKFGLDATAVGDEGGFAPNILDNKEGLRLIVEAIEKAGYTGKVEI 242
++G+EVYH LK VI K+G DAT VGDEGGFAPNIL+N E L L+ EAI+KAGYT K+ I
Sbjct: 182 RLGAEVYHTLKGVIKDKYGKDATNVGDEGGFAPNILENSEALELVKEAIDKAGYTEKIVI 241
Query: 243 GMDVAASEFFKEGQYDLDFKNPNSDKSQWLPADKLTALYQEFIKEYPIVSIEDPM 297
GMDVAASEF+++G+YDLDFK+P +D S+++ D+L ALYQ+F+++YP+VSIEDP
Sbjct: 242 GMDVAASEFYRDGKYDLDFKSP-TDPSRYITGDQLGALYQDFVRDYPVVSIEDPF 295
>3qtp_A Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Entamoeba
histolytica}
Length = 441
Score = 559 bits (1443), Expect = 0.0
Identities = 181/301 (60%), Positives = 220/301 (73%), Gaps = 6/301 (1%)
Query: 1 MPISKIHARQIFDSRGNPTVEVDLTTELGLFRAAVPSGASTGIYEALELRDNDKAHYHGK 60
M I K+HAR+I DSRGNPT+EV++TT G+FR+ VPSGASTG++EA+ELRD DK Y GK
Sbjct: 6 MSIQKVHAREILDSRGNPTIEVEITTGKGMFRSCVPSGASTGVHEAVELRDGDKKRYGGK 65
Query: 61 GVTKAVGFINNDIAPALLKESFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAK 120
GV KAV +N I PALL V Q E+DE MIKLDGT NK K GANAILG S+++ +
Sbjct: 66 GVLKAVENVNTIIGPALLG--KNVLNQAELDEMMIKLDGTNNKGKLGANAILGCSMSICR 123
Query: 121 AGAAKKGVPLYKHLADLAGNSNIILPVPAFNVINGGSHAGNKLAMQEFMILPTGASSFSE 180
A AA+KG+PLYK+LA+L G+ + +PVP FNVINGG+HAGN LAMQEFMI PTGA++F E
Sbjct: 124 AAAAEKGLPLYKYLAELTGHKEMTMPVPCFNVINGGAHAGNALAMQEFMICPTGATNFHE 183
Query: 181 AMKIGSEVYHHLKKVINTKFGLDATAVGDEGGFAPNILDNKEGLRLIVEAIEKAGYTGKV 240
A+++ +E Y LK VI K+G DAT VGDEGGFAPN+ +E L L+VEAI KAGYTGK+
Sbjct: 184 ALRMAAETYQCLKVVIKAKYGQDATNVGDEGGFAPNVSGAREALDLLVEAIAKAGYTGKI 243
Query: 241 EIGMDVAASEFFKE--GQYDLDFKNP--NSDKSQWLPADKLTALYQEFIKEYPIVSIEDP 296
EI MD AASEF+ E +YDL K P D S D L A Y ++ K YPI SIEDP
Sbjct: 244 EIAMDCAASEFYNEETKKYDLGKKIPADKKDPSLVKDVDGLIAEYVDYGKHYPIASIEDP 303
Query: 297 M 297
Sbjct: 304 F 304
>2ptz_A Enolase; lyase, glycolysis,His-TAG; 1.65A {Trypanosoma brucei}
SCOP: c.1.11.1 d.54.1.1 PDB: 2ptx_A 2pty_A* 2ptw_A
2pu0_A 2pu1_A* 1oep_A
Length = 432
Score = 550 bits (1419), Expect = 0.0
Identities = 173/299 (57%), Positives = 217/299 (72%), Gaps = 7/299 (2%)
Query: 1 MPISKIHARQIFDSRGNPTVEVDLTTELGLFRAAVPSGASTGIYEALELRDNDKAHYHGK 60
M I K+H R++ DSRGNPTVEV++TTE G+FR+AVPSGASTG+YEA ELRD DK Y GK
Sbjct: 4 MTIQKVHGREVLDSRGNPTVEVEVTTEKGVFRSAVPSGASTGVYEACELRDGDKKRYVGK 63
Query: 61 GVTKAVGFINNDIAPALLKESFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAK 120
G +AV +N I PAL+ + +Q+E+D M++LDGT NK K GANAILG S+A++K
Sbjct: 64 GCLQAVKNVNEVIGPALIG--RDELKQEELDTLMLRLDGTPNKGKLGANAILGCSMAISK 121
Query: 121 AGAAKKGVPLYKHLADLAGNSNIILPVPAFNVINGGSHAGNKLAMQEFMILPTGASSFSE 180
A AA KGVPLY++LA LAG + LPVP FNVINGG HAGN L QEFMI P A+SFSE
Sbjct: 122 AAAAAKGVPLYRYLASLAGTKELRLPVPCFNVINGGKHAGNALPFQEFMIAPVKATSFSE 181
Query: 181 AMKIGSEVYHHLKKVINTKFGLDATAVGDEGGFAPNILDNKEGLRLIVEAIEKAGYTGKV 240
A+++GSEVYH L+ +I K+G DA VGDEGGFAP I D E L +++EAIE+AG+ GK
Sbjct: 182 ALRMGSEVYHSLRGIIKKKYGQDAVNVGDEGGFAPPIKDINEPLPILMEAIEEAGHRGKF 241
Query: 241 EIGMDVAASEFFKEG--QYDLDFKNPNSDKSQWLPADKLTALYQEFIKEYPIVSIEDPM 297
I MD AASE + E QY+L FK+P W+ A++L Y ++ +YPIVSIEDP
Sbjct: 242 AICMDCAASETYDEKKQQYNLTFKSPE---PTWVTAEQLRETYCKWAHDYPIVSIEDPY 297
>3otr_A Enolase; structural genomics, center for structural genomics of
infec diseases, csgid, alpha-beta barrel, TIM barrel;
2.75A {Toxoplasma gondii}
Length = 452
Score = 547 bits (1412), Expect = 0.0
Identities = 178/307 (57%), Positives = 225/307 (73%), Gaps = 12/307 (3%)
Query: 1 MPISKIHARQIFDSRGNPTVEVDLTTELGLFRAAVPSGASTGIYEALELRDNDKAHYHGK 60
+ I I AR+I DSRGNPT+EVD++TE G+FRAAVPSGASTGIYEALELRD D Y GK
Sbjct: 2 VVIKDIVAREILDSRGNPTIEVDVSTEGGVFRAAVPSGASTGIYEALELRDKDPKRYLGK 61
Query: 61 GVTKAVGFINNDIAPALLKESFEVTQQKEIDEFMI-KLDGTEN-----KSKFGANAILGV 114
GV AV + +I PALL + QK ID M+ +LDGT+N KSK GANAILGV
Sbjct: 62 GVLNAVEIVRQEIKPALLG--KDPCDQKGIDMLMVEQLDGTKNEWGYSKSKLGANAILGV 119
Query: 115 SLAVAKAGAAKKGVPLYKHLADLAGNS--NIILPVPAFNVINGGSHAGNKLAMQEFMILP 172
S+A +AGAA KG+PLYK++A LAG + +++PVP FNVINGG HAGN LA+QEF+I P
Sbjct: 120 SIACCRAGAASKGLPLYKYIATLAGKTIDKMVMPVPFFNVINGGEHAGNGLALQEFLIAP 179
Query: 173 TGASSFSEAMKIGSEVYHHLKKVINTKFGLDATAVGDEGGFAPNILDNKEGLRLIVEAIE 232
GA + EA++ GSE YHHLK VI K+GLDAT VGDEGGFAPN+ +E L L+VEAI+
Sbjct: 180 VGAPNIREAIRYGSETYHHLKNVIKNKYGLDATNVGDEGGFAPNVATAEEALNLLVEAIK 239
Query: 233 KAGYTGKVEIGMDVAASEFFKE--GQYDLDFKNPNSDKSQWLPADKLTALYQEFIKEYPI 290
AGY GK++I D AASEF+K+ +YDLD+K + S+ L +KL +Y+ ++K+YPI
Sbjct: 240 AAGYEGKIKIAFDAAASEFYKQDEKKYDLDYKCKTKNASKHLTGEKLKEVYEGWLKKYPI 299
Query: 291 VSIEDPM 297
+S+EDP
Sbjct: 300 ISVEDPF 306
>2pa6_A Enolase; glycolysis, lyase, magnesium, metal-binding, structural
GENO NPPSFA; 1.85A {Methanocaldococcus jannaschii}
Length = 427
Score = 506 bits (1305), Expect = 0.0
Identities = 157/298 (52%), Positives = 204/298 (68%), Gaps = 15/298 (5%)
Query: 1 MPISKIHARQIFDSRGNPTVEVDLTTELG-LFRAAVPSGASTGIYEALELRDNDKAHYHG 59
I I AR++ DSRGNPTVEV++ T+ A VPSGASTG +EALELRD +K + G
Sbjct: 9 FEIKDIVAREVIDSRGNPTVEVEVITKGNGYGSAIVPSGASTGTHEALELRDKEKR-FGG 67
Query: 60 KGVTKAVGFINNDIAPALLKESFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVA 119
KGV AV +N+ I P +L ++ Q+EID MI+LDGT NKS+ GANAIL VSLAVA
Sbjct: 68 KGVLMAVENVNSIIRPEILG--YDARMQREIDTIMIELDGTPNKSRLGANAILAVSLAVA 125
Query: 120 KAGAAKKGVPLYKHLADLAGNSNIILPVPAFNVINGGSHAGNKLAMQEFMILPTGASSFS 179
KA AA +PLYK+L G ++ ++PVP NVINGG HAGN L +QEFMI+P GA+S S
Sbjct: 126 KAAAATAKIPLYKYLG---GFNSYVMPVPMMNVINGGKHAGNDLDLQEFMIMPVGATSIS 182
Query: 180 EAMKIGSEVYHHLKKVINTKFGLDATAVGDEGGFAPNILDNKEGLRLIVEAIEKAGYTGK 239
EA+++GSEVYH LK VI K+G +A VGDEGGFAP + ++E L L+ E+++KAGY +
Sbjct: 183 EAVRMGSEVYHVLKNVILEKYGKNAVNVGDEGGFAPPLKTSREALDLLTESVKKAGYEDE 242
Query: 240 VEIGMDVAASEFFKEGQYDLDFKNPNSDKSQWLPADKLTALYQEFIKEYPIVSIEDPM 297
V +D AASEF+K+G Y ++ K L ++L Y+ + EYPIVSIEDP
Sbjct: 243 VVFALDAAASEFYKDGYYYVEGK--------KLTREELLDYYKALVDEYPIVSIEDPF 292
>1w6t_A Enolase; bacterial infection, surface protein, moonlighting
protein, glycolysis, phosphopyruvate hydratase, lyase;
HET: 2PE; 2.10A {Streptococcus pneumoniae} SCOP:
c.1.11.1 d.54.1.1 PDB: 1iyx_A
Length = 444
Score = 441 bits (1138), Expect = e-156
Identities = 143/298 (47%), Positives = 197/298 (66%), Gaps = 10/298 (3%)
Query: 3 ISKIHARQIFDSRGNPTVEVDLTTELGLF-RAAVPSGASTGIYEALELRDNDKAHYHGKG 61
I+ ++AR++ DSRGNPT+EV++ TE G F R VPSGASTG +EA+ELRD DK+ Y G G
Sbjct: 14 ITDVYAREVLDSRGNPTLEVEVYTESGAFGRGMVPSGASTGEHEAVELRDGDKSRYGGLG 73
Query: 62 VTKAVGFINNDIAPALLKESFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKA 121
KAV +NN IA A++ ++V Q+ ID MI LDGT NK K GANAILGVS+AVA+A
Sbjct: 74 TQKAVDNVNNIIAEAII--GYDVRDQQAIDRAMIALDGTPNKGKLGANAILGVSIAVARA 131
Query: 122 GAAKKGVPLYKHLADLAGNSNIILPVPAFNVINGGSHAGNKLAMQEFMILPTGASSFSEA 181
A +PLY +L +LP P N+INGGSH+ +A QEFMILP GA +F EA
Sbjct: 132 AADYLEIPLYSYLGGFNTK---VLPTPMMNIINGGSHSDAPIAFQEFMILPVGAPTFKEA 188
Query: 182 MKIGSEVYHHLKKVINTKFGLDATAVGDEGGFAPNILDNKEGLRLIVEAIEKAGYT-GK- 239
++ G+E++H LKK++ ++ GL TAVGDEGGFAP ++G+ I+ AIE AGY GK
Sbjct: 189 LRYGAEIFHALKKILKSR-GL-ETAVGDEGGFAPRFEGTEDGVETILAAIEAAGYVPGKD 246
Query: 240 VEIGMDVAASEFFKEGQYDLDFKNPNSDKSQWLPADKLTALYQEFIKEYPIVSIEDPM 297
V +G D A+SEF+ + + D+ + + + + +E + +YPI++IED M
Sbjct: 247 VFLGFDCASSEFYDKERKVYDYTKFEGEGAAVRTSAEQIDYLEELVNKYPIITIEDGM 304
>2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli}
SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A 3h8a_A
Length = 431
Score = 441 bits (1136), Expect = e-156
Identities = 162/299 (54%), Positives = 205/299 (68%), Gaps = 13/299 (4%)
Query: 3 ISKIHARQIFDSRGNPTVEVDLTTELGLF-RAAVPSGASTGIYEALELRDNDKAHYHGKG 61
I KI R+I DSRGNPTVE ++ E G AA PSGASTG EALELRD DK+ + GKG
Sbjct: 3 IVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKG 62
Query: 62 VTKAVGFINNDIAPALLKESFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKA 121
VTKAV +N IA AL+ + Q ID+ MI LDGTENKSKFGANAIL VSLA AKA
Sbjct: 63 VTKAVAAVNGPIAQALI--GKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKA 120
Query: 122 GAAKKGVPLYKHLADLAGNSNI-ILPVPAFNVINGGSHAGNKLAMQEFMILPTGASSFSE 180
AA KG+PLY+H+A+L G +PVP N+INGG HA N + +QEFMI P GA + E
Sbjct: 121 AAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKE 180
Query: 181 AMKIGSEVYHHLKKVINTKFGLDATAVGDEGGFAPNILDNKEGLRLIVEAIEKAGYT-GK 239
A+++GSEV+HHL KV+ K G+ TAVGDEGG+APN+ N E L +I EA++ AGY GK
Sbjct: 181 AIRMGSEVFHHLAKVLKAK-GM-NTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGK 238
Query: 240 -VEIGMDVAASEFFKEGQYDLDFKNPNSDKSQWLPADKLTALYQEFIKEYPIVSIEDPM 297
+ + MD AASEF+K+G+Y L + ++ +++ T +E K+YPIVSIED +
Sbjct: 239 DITLAMDCAASEFYKDGKYVLA-----GEGNKAFTSEEFTHFLEELTKQYPIVSIEDGL 292
>3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii}
Length = 428
Score = 436 bits (1125), Expect = e-154
Identities = 144/298 (48%), Positives = 196/298 (65%), Gaps = 17/298 (5%)
Query: 3 ISKIHARQIFDSRGNPTVEVDLTTELGLF-RAAVPSGASTGIYEALELRDNDKAHYHGKG 61
I+ I+A +I DSR NPT+EV +T + AAVPSGASTG EA+ELRDND Y GKG
Sbjct: 5 ITDINAHEILDSRANPTLEVRVTLSSQAYGCAAVPSGASTGEREAVELRDNDLERYGGKG 64
Query: 62 VTKAVGFINNDIAPALLKESFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKA 121
V +AV +N I ALL + Q+EID MI+LDGTENK+ GANAILGVSLAVA A
Sbjct: 65 VLQAVENVNGPIRDALL--GQDPRSQEEIDRIMIELDGTENKANLGANAILGVSLAVAYA 122
Query: 122 GAAKKGVPLYKHLADLAGNSNIILPVPAFNVINGGSHAGNKLAMQEFMILPTGASSFSEA 181
A +PLY++L +PVP N+INGG+HA N L QEFMI+P GA +F+EA
Sbjct: 123 AANNADLPLYRYLGGD--GGPFSMPVPMMNIINGGAHATNNLDFQEFMIVPVGAPTFAEA 180
Query: 182 MKIGSEVYHHLKKVINTKFGLDATAVGDEGGFAPNILDNKEGLRLIVEAIEKAGYT-GK- 239
++ G+EV+H LKK + ++ GL +AVGDEGGFAP++ +N+ LI+EAIE A Y GK
Sbjct: 181 LRYGAEVFHALKKRLVSR-GL-MSAVGDEGGFAPDLPNNEAAFELILEAIEDANYVPGKD 238
Query: 240 VEIGMDVAASEFFKEGQYDLDFKNPNSDKSQWLPADKLTALYQEFIKEYPIVSIEDPM 297
+ + +D A+SE ++ G+YD + L ++++ E+ K+YP++SIED +
Sbjct: 239 IYLALDAASSELYQNGRYDFENNQ--------LTSEEMIDRLTEWTKKYPVISIEDGL 288
>3qn3_A Enolase; structural genomics, center for structural genomics of
infec diseases, csgid, glycolysis, lyase; 2.13A
{Campylobacter jejuni}
Length = 417
Score = 431 bits (1112), Expect = e-152
Identities = 139/296 (46%), Positives = 191/296 (64%), Gaps = 17/296 (5%)
Query: 3 ISKIHARQIFDSRGNPTVEVDLTTELGLF-RAAVPSGASTGIYEALELRDNDKAHYHGKG 61
I + A ++ DSRGNPTV+ ++T G A VPSGASTG EALELRDND+ + GKG
Sbjct: 7 IEDVRAYEVLDSRGNPTVKAEVTLSDGSVGAAIVPSGASTGSKEALELRDNDE-RFGGKG 65
Query: 62 VTKAVGFINNDIAPALLKESFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKA 121
V KAV +N IA +L + Q ++D+ + +LDGT N S GANA LGVS+A A+A
Sbjct: 66 VLKAVANVNETIADEIL--GLDAFNQTQLDDTLRELDGTNNYSNLGANATLGVSMATARA 123
Query: 122 GAAKKGVPLYKHLADLAGNSNIILPVPAFNVINGGSHAGNKLAMQEFMILPTGASSFSEA 181
AA G+PLY++L G + ILPVP N+INGG+HA N + QEFMI+P G +SF EA
Sbjct: 124 AAAALGMPLYRYLG---GANASILPVPMCNIINGGAHANNNVDFQEFMIMPFGFTSFKEA 180
Query: 182 MKIGSEVYHHLKKVINTKFGLDATAVGDEGGFAPNILDNKEGLRLIVEAIEKAGYTGKVE 241
++ E+Y LKK + G +TA+GDEGGFAPN+ +N E + L++ I+KAGY +V+
Sbjct: 181 LRSVCEIYAILKKELANS-GH-STALGDEGGFAPNLANNTEPIDLLMTCIKKAGYENRVK 238
Query: 242 IGMDVAASEFFKEGQYDLDFKNPNSDKSQWLPADKLTALYQEFIKEYPIVSIEDPM 297
I +DVA++EFFK+G+Y ++ K ++ L Y E +YPI SIED +
Sbjct: 239 IALDVASTEFFKDGKYHMEGKA--------FSSEALIERYVELCAKYPICSIEDGL 286
>3uj2_A Enolase 1; enzyme function initiative, EFI, lyase; 2.00A
{Anaerostipes caccae}
Length = 449
Score = 431 bits (1111), Expect = e-151
Identities = 139/300 (46%), Positives = 193/300 (64%), Gaps = 14/300 (4%)
Query: 1 MPISKIHARQIFDSRGNPTVEVDLTTELGLF-RAAVPSGASTGIYEALELRDNDKAHYHG 59
+ I K+ R+I DSRGNPTVE ++ G+ R PSGASTG +EALELRD DK + G
Sbjct: 26 LEIEKVIGREIIDSRGNPTVEAEVYLAGGVTGRGTAPSGASTGEFEALELRDGDKGRFGG 85
Query: 60 KGVTKAVGFINNDIAPALLKESFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVA 119
KGVTKAV IN +I+ L + + +D MI DGT++KSKFGANA+L VS+A A
Sbjct: 86 KGVTKAVQNINTEISEILS--GMDASDIYAVDRAMIDADGTKDKSKFGANAVLAVSIACA 143
Query: 120 KAGAAKKGVPLYKHLADLAGNSNIILPVPAFNVINGGSHAGNKLAMQEFMILPTGASSFS 179
KA AA GVPLY+ L L N LPVP N++NGG+HA N + +QEFMI+P GA SF
Sbjct: 144 KAAAAALGVPLYRFLGGLNAN---RLPVPMMNILNGGAHAANTVDVQEFMIMPVGAESFR 200
Query: 180 EAMKIGSEVYHHLKKVINTKFGLDATAVGDEGGFAPNILDNKEGLRLIVEAIEKAGYT-G 238
EA++ +EV+H L ++ +K GL AT+VGDEGGFAP++ ++E + I+EA++ AGY G
Sbjct: 201 EALRQCTEVFHALAGLLKSK-GL-ATSVGDEGGFAPDLASDEEAIEYILEAVKLAGYEPG 258
Query: 239 K-VEIGMDVAASEFFKEGQYDLDFKNPNSDKSQWLPADKLTALYQEFIKEYPIVSIEDPM 297
+ + MD A+SE+ E + + + +++L A ++ + YPIVSIED +
Sbjct: 259 RDFVLAMDAASSEWKGEKKGEYILPKCKRKFA----SEELVAHWKSLCERYPIVSIEDGL 314
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.5 bits (128), Expect = 4e-08
Identities = 60/341 (17%), Positives = 98/341 (28%), Gaps = 145/341 (42%)
Query: 8 ARQIFD-----------------SRGNPTVEVDLTTELGLFRAAVPSGASTGIYEALELR 50
A+ +++ NP + G G +R
Sbjct: 1642 AQDVWNRADNHFKDTYGFSILDIVINNPV------------NLTIHFGGEKG----KRIR 1685
Query: 51 DNDKAH-YH----GKGVTKAVGFINNDIAPALLKESFEVTQQKEIDEFMIKLDGTENKSK 105
+N A + GK T+ I +I +F +K L T+
Sbjct: 1686 ENYSAMIFETIVDGKLKTEK---IFKEINEHSTSYTFR--SEKG------LLSATQF--- 1731
Query: 106 FGAN-AILGVSLAVAKAGAAKKGVPLYKHLADLAGNSNIILPVPAFNVINGG------SH 158
A+ + A + +K +P A AG+S L G S
Sbjct: 1732 --TQPALTLMEKAAFEDLKSKGLIPAD---ATFAGHS---L----------GEYAALASL 1773
Query: 159 AGNKLAMQEFMILPTGASSFSEAMKI----GSEVYHHLKKVINTKFGLDATAVGDEGGFA 214
A M S +++ G + + + D + G A
Sbjct: 1774 AD---VM-----------SIESLVEVVFYRGMTMQVAVPR--------DELGRSNYGMIA 1811
Query: 215 PN-----ILDNKEGLRLIVEAIEKAGYTGK-VEIGMDVAASEFFKEGQYDLDFKNPNSDK 268
N ++E L+ +VE + K TG VEI V N N +
Sbjct: 1812 INPGRVAASFSQEALQYVVERVGKR--TGWLVEI---V----------------NYNVEN 1850
Query: 269 SQW-----LPA-DKLTALYQEFIKEYPI--------VSIED 295
Q+ L A D +T + FIK I +S+E+
Sbjct: 1851 QQYVAAGDLRALDTVTNV-LNFIKLQKIDIIELQKSLSLEE 1890
Score = 33.1 bits (75), Expect = 0.13
Identities = 48/258 (18%), Positives = 80/258 (31%), Gaps = 86/258 (33%)
Query: 78 LKESFEVTQQKEIDEFMIKLDGTENKS------KFGANAILG-VSLAVAKAGAAKKGVPL 130
L+E F + + F E + KF LG VS V + + L
Sbjct: 33 LQEQFNKILPEPTEGFA---ADDEPTTPAELVGKF-----LGYVSSLVEPSKVGQFDQVL 84
Query: 131 YKHLAD-----LAGNSNIILPVPAFNVINGGSHAGNKLAMQEFMILPTGASSFSEAMKIG 185
L + L GN +I HA LA + T E +K
Sbjct: 85 NLCLTEFENCYLEGN-DI--------------HA---LAAKLLQENDTTLVKTKELIKN- 125
Query: 186 SEVYHHLKKVINTKFG-------LDATAVGDE------GGFAPNI--LDNKEGLR----- 225
Y + + F A G+ GG + E LR
Sbjct: 126 ---YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE--E-LRDLYQT 179
Query: 226 ---LIVEAIEKAGYTGKVEIGMDVAASEFFKEGQYDLDFKNPNSDKSQWL--PADKLTAL 280
L+ + I+ + T I + A + F +G L+ +WL P++
Sbjct: 180 YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG---LNIL-------EWLENPSNTPD-- 227
Query: 281 YQEFIKEYPIVSIEDPML 298
++++ P +S P++
Sbjct: 228 -KDYLLSIP-ISC--PLI 241
Score = 27.7 bits (61), Expect = 6.4
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 7/55 (12%)
Query: 238 GKVEIGMDVAASEFFKEGQYDLDFKNPNSDKSQWLPAD-------KLTALYQEFI 285
G +E + V + FF Q F + ++ AD +L + ++
Sbjct: 14 GSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYV 68
>1kcz_A Beta-methylaspartase; beta zigzag, alpha/beta-barrel, lyase; 1.90A
{Clostridium tetanomorphum} SCOP: c.1.11.2 d.54.1.1 PDB:
1kd0_A* 3zvi_A 3zvh_A
Length = 413
Score = 44.3 bits (104), Expect = 3e-05
Identities = 37/242 (15%), Positives = 65/242 (26%), Gaps = 50/242 (20%)
Query: 19 TVEVDLTTELGLF---RAAVPSGASTGIYEALELRDNDKAHYHGKGVTKAVGFINNDIAP 75
++ V L E G A + G + L L + + I +IAP
Sbjct: 52 SISVLLVLEDGQVAHGDCAAVQYSGAGGRDPLFLAKD------------FIPVIEKEIAP 99
Query: 76 ALLKESFEVTQQKEIDEFMIKLDGTENKSKFGANAI-LGVSLAVAKAGAAKKGVPLYKHL 134
L+ + D AI G++ A+ A A + V + + +
Sbjct: 100 KLIGREIT-----NFKPMAEEFDKMTVNGNRLHTAIRYGITQAILDAVAKTRKVTMAEVI 154
Query: 135 ADLAGNSNIILPVPAFNVINGGSHAGNKLAMQEFMILPTGASSFSEAMKIGSEVYHHLKK 194
D I VP F ++ + MI +K + H L
Sbjct: 155 RDEYNPGAEINAVPVF-----AQSGDDRYDNVDKMI-----------IKEADVLPHALIN 198
Query: 195 VINTKFGLDATAVGDEGGFAPNILDNKEGLRLIVEAIEKAGYTGKVEIGMDVAASEFFKE 254
+ K GL + E ++ + + I K +
Sbjct: 199 NVEEKLGLKGEKL-------------LEYVKWLRDRIIKLRVREDYAPIFHIDVYGTIGA 245
Query: 255 GQ 256
Sbjct: 246 AF 247
>1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel;
1.33A {Citrobacter amalonaticus} SCOP: c.1.11.2 d.54.1.1
PDB: 1kkr_A*
Length = 413
Score = 40.0 bits (93), Expect = 6e-04
Identities = 25/145 (17%), Positives = 43/145 (29%), Gaps = 22/145 (15%)
Query: 66 VGFINNDIAPALLKESFEVTQQKEIDEFMIKLDGTENKSKFGANAI-LGVSLAVAKAGAA 124
+ F+N+ I P L + D A+ G+S A+ A A
Sbjct: 90 IPFLNDHIKPLLEGRDVD-----AFLPNARFFDKLRIDGNLLHTAVRYGLSQALLDATAL 144
Query: 125 KKGVPLYKHLADLAGNSNIILPVPAFNVINGGSHAGNKLAMQEFMILPTGASSFSEAMKI 184
G + + D + +P F G ++ + MIL K
Sbjct: 145 ASGRLKTEVVCDEWQLPCVPEAIPLF-----GQSGDDRYIAVDKMIL-----------KG 188
Query: 185 GSEVYHHLKKVINTKFGLDATAVGD 209
+ H L + K G + +
Sbjct: 189 VDVLPHALINNVEEKLGFKGEKLRE 213
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.8 bits (79), Expect = 0.033
Identities = 46/329 (13%), Positives = 90/329 (27%), Gaps = 104/329 (31%)
Query: 9 RQIFDSRGNPT---VEVD-----LTTE--LGLFRAAV-------PSGASTG-------IY 44
+Q+ D T + +D LT + L + P T I
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII- 333
Query: 45 EALELRDNDK-----AHYHGKGVTKAVGFINNDIAPALLKESFE----------VTQQ-- 87
A +RD H + +T + N + PA ++ F+ +
Sbjct: 334 -AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392
Query: 88 -------KEIDEFMIKLDGTENKS------KFGANAILGVSLAVAKAGAA-----KKGVP 129
+ D ++ ++ S K +I + L + + V
Sbjct: 393 SLIWFDVIKSDVMVV-VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451
Query: 130 LYKHLADLAGNSNIILPVPA----FNVINGGSHAGNKLAMQEFMILPTGASSFSEAMKIG 185
Y + ++P ++ I G H N + +
Sbjct: 452 HYNIPKTFDSDD--LIPPYLDQYFYSHI--GHHLKNIEHPERMTLFR------------- 494
Query: 186 SEVYHHL----KKVINTKFGLDATA-----VGDEGGFAPNILDNKEGLRLIVEAIEK--- 233
V+ +K+ + +A+ + + P I DN +V AI
Sbjct: 495 -MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP 553
Query: 234 --------AGYTGKVEIGMDVAASEFFKE 254
+ YT + I + F+E
Sbjct: 554 KIEENLICSKYTDLLRIALMAEDEAIFEE 582
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 1.6
Identities = 7/13 (53%), Positives = 9/13 (69%), Gaps = 1/13 (7%)
Query: 72 DIAPAL-LKESFE 83
D APAL +K + E
Sbjct: 35 DSAPALAIKATME 47
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR
{Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A
2ggp_B
Length = 72
Score = 26.8 bits (60), Expect = 2.0
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 219 DNKEGLRLIVEAIEKAGYTGKV 240
DN+ I E IE G+ ++
Sbjct: 47 DNEVTADSIKEIIEDCGFDCEI 68
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein
interaction, copper(I), metal homeostasis, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
1yjt_A 1yju_A 1yjv_A
Length = 75
Score = 26.5 bits (59), Expect = 2.7
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 223 GLRLIVEAIEKAGYTGKVE 241
G R I+ IE G+ +
Sbjct: 54 GPRDIIHTIESLGFEPSLV 72
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab
fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1
PDB: 1oq3_A 1oq6_A
Length = 76
Score = 26.2 bits (58), Expect = 4.6
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 223 GLRLIVEAIEKAGYTGKVE 241
G I E IEK GY +E
Sbjct: 56 GTAAIQEKIEKLGYHVVIE 74
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like
fold, structural genomics, structural proteomics in
europe, spine, hydrolase; NMR {Homo sapiens}
Length = 149
Score = 26.9 bits (60), Expect = 4.6
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 223 GLRLIVEAIEKAGYTGKV 240
G R I++ IE+ G+ +
Sbjct: 130 GPRDIIKIIEEIGFHASL 147
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation;
NMR {Enterococcus hirae} SCOP: d.58.17.1
Length = 68
Score = 25.7 bits (57), Expect = 5.0
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 4/28 (14%)
Query: 213 FAPNILDNKEGLRLIVEAIEKAGYTGKV 240
F + E I +AI + GY +V
Sbjct: 44 FDEANVQATE----ICQAINELGYQAEV 67
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding
protein, perisplasm, structural genomics; 2.00A
{Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A
1afj_A 2hqi_A
Length = 72
Score = 25.7 bits (57), Expect = 6.0
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 227 IVEAIEKAGYTGKVE 241
+ +A AGY V+
Sbjct: 57 LTKATADAGYPSSVK 71
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.0 bits (59), Expect = 6.9
Identities = 6/34 (17%), Positives = 18/34 (52%)
Query: 72 DIAPALLKESFEVTQQKEIDEFMIKLDGTENKSK 105
D A ++++ + +K+++E+ + K+K
Sbjct: 102 DAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK 135
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain,
hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB:
2aw0_A
Length = 72
Score = 25.3 bits (56), Expect = 6.9
Identities = 4/15 (26%), Positives = 7/15 (46%)
Query: 227 IVEAIEKAGYTGKVE 241
+ AIE G+ +
Sbjct: 57 LRGAIEDMGFDATLS 71
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold,
ATP- binding, ethylene signaling pathway, hydrolase, ION
transport; 1.70A {Arabidopsis thaliana}
Length = 74
Score = 25.3 bits (56), Expect = 8.0
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 213 FAPNILDNKEGLRLIVEAIEKAGYTGKVE 241
F PN++ ++ I E IE AG+ ++
Sbjct: 46 FDPNLVKEED----IKEEIEDAGFEAEIL 70
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces
pombe}
Length = 450
Score = 27.1 bits (60), Expect = 8.4
Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 8/78 (10%)
Query: 58 HGKGVTKAVGFINNDIAPALLKESFEVTQQKEIDEFMIK-LDGTENKSKFGANAILGV-- 114
+ V N I +L + VT+ E + LD + I+GV
Sbjct: 98 ADQNVWNICA---NKIVDSLSQNGMTVTKLVFGGEASLVELDKLRKQCPDDTQVIIGVGG 154
Query: 115 --SLAVAKAGAAKKGVPL 130
++ AK A +P
Sbjct: 155 GKTMDSAKYIAHSMNLPS 172
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo
sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Length = 84
Score = 25.4 bits (56), Expect = 8.7
Identities = 4/15 (26%), Positives = 8/15 (53%)
Query: 227 IVEAIEKAGYTGKVE 241
+ + IE G+ V+
Sbjct: 63 MKKQIEAMGFPAFVK 77
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold,
beta-alpha-beta-BETA-alpha-beta structure, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
1y3k_A
Length = 77
Score = 25.4 bits (56), Expect = 8.7
Identities = 6/28 (21%), Positives = 11/28 (39%), Gaps = 4/28 (14%)
Query: 213 FAPNILDNKEGLRLIVEAIEKAGYTGKV 240
+ P ++ I E I + G+ V
Sbjct: 47 YNPAVIQPPM----IAEFIRELGFGATV 70
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase,
water-soluble region, beta-alpha-beta- beta-alpha-beta
fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1
PDB: 2rml_A
Length = 151
Score = 26.2 bits (58), Expect = 8.8
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 223 GLRLIVEAIEKAGYTGKVE 241
+ + EA++K GY K++
Sbjct: 124 SVSDLKEAVDKLGYKLKLK 142
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.135 0.380
Gapped
Lambda K H
0.267 0.0650 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,726,036
Number of extensions: 302465
Number of successful extensions: 637
Number of sequences better than 10.0: 1
Number of HSP's gapped: 589
Number of HSP's successfully gapped: 38
Length of query: 299
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 206
Effective length of database: 4,105,140
Effective search space: 845658840
Effective search space used: 845658840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (25.9 bits)