RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12655
(299 letters)
>d2al1a1 c.1.11.1 (A:142-436) Enolase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 295
Score = 206 bits (526), Expect = 4e-66
Identities = 99/157 (63%), Positives = 122/157 (77%)
Query: 141 SNIILPVPAFNVINGGSHAGNKLAMQEFMILPTGASSFSEAMKIGSEVYHHLKKVINTKF 200
S +LPVP NV+NGGSHAG LA+QEFMI PTGA +F+EA++IGSEVYH+LK + ++
Sbjct: 1 SPYVLPVPFLNVLNGGSHAGGALALQEFMIAPTGAKTFAEALRIGSEVYHNLKSLTKKRY 60
Query: 201 GLDATAVGDEGGFAPNILDNKEGLRLIVEAIEKAGYTGKVEIGMDVAASEFFKEGQYDLD 260
G A VGDEGG APNI +E L LIV+AI+ AG+ GKV+IG+D A+SEFFK+G+YDLD
Sbjct: 61 GASAGNVGDEGGVAPNIQTAEEALDLIVDAIKAAGHDGKVKIGLDCASSEFFKDGKYDLD 120
Query: 261 FKNPNSDKSQWLPADKLTALYQEFIKEYPIVSIEDPM 297
FKNPNSDKS+WL +L LY +K YPIVSIEDP
Sbjct: 121 FKNPNSDKSKWLTGPQLADLYHSLMKRYPIVSIEDPF 157
>d2akza2 d.54.1.1 (A:1-139) Enolase {Human (Homo sapiens), gamma
isoform [TaxId: 9606]}
Length = 139
Score = 195 bits (497), Expect = 7e-64
Identities = 99/138 (71%), Positives = 113/138 (81%)
Query: 3 ISKIHARQIFDSRGNPTVEVDLTTELGLFRAAVPSGASTGIYEALELRDNDKAHYHGKGV 62
I KI AR+I DSRGNPTVEVDL T GLFRAAVPSGASTGIYEALELRD DK Y GKGV
Sbjct: 2 IEKIWAREILDSRGNPTVEVDLYTAKGLFRAAVPSGASTGIYEALELRDGDKQRYLGKGV 61
Query: 63 TKAVGFINNDIAPALLKESFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAG 122
KAV IN+ IAPAL+ V +Q+++D M++LDGTENKSKFGANAILGVSLAV KAG
Sbjct: 62 LKAVDHINSTIAPALISSGLSVVEQEKLDNLMLELDGTENKSKFGANAILGVSLAVCKAG 121
Query: 123 AAKKGVPLYKHLADLAGN 140
AA++ +PLY+H+A LAGN
Sbjct: 122 AAERELPLYRHIAQLAGN 139
>d2al1a2 d.54.1.1 (A:1-141) Enolase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 141
Score = 186 bits (474), Expect = 3e-60
Identities = 88/138 (63%), Positives = 114/138 (82%)
Query: 3 ISKIHARQIFDSRGNPTVEVDLTTELGLFRAAVPSGASTGIYEALELRDNDKAHYHGKGV 62
+SK++AR ++DSRGNPTVEV+LTTE G+FR+ VPSGASTG++EALE+RD DK+ + GKGV
Sbjct: 2 VSKVYARSVYDSRGNPTVEVELTTEKGVFRSIVPSGASTGVHEALEMRDGDKSKWMGKGV 61
Query: 63 TKAVGFINNDIAPALLKESFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAG 122
AV +N+ IAPA +K + +V QK +D+F+I LDGT NKSK GANAILGVSLA ++A
Sbjct: 62 LHAVKNVNDVIAPAFVKANIDVKDQKAVDDFLISLDGTANKSKLGANAILGVSLAASRAA 121
Query: 123 AAKKGVPLYKHLADLAGN 140
AA+K VPLYKHLADL+ +
Sbjct: 122 AAEKNVPLYKHLADLSKS 139
Score = 29.5 bits (66), Expect = 0.27
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 156 GSHAGNKLAMQEFMILPTGASSFSEAMKIGSEVYHHLKKVINTK 199
G+ +KL + + AS + A K +Y HL + +K
Sbjct: 98 GTANKSKLGANAILGVSLAASRAAAAEK-NVPLYKHLADLSKSK 140
>d2akza1 c.1.11.1 (A:140-433) Enolase {Human (Homo sapiens), gamma
isoform [TaxId: 9606]}
Length = 294
Score = 188 bits (478), Expect = 7e-59
Identities = 110/157 (70%), Positives = 136/157 (86%), Gaps = 1/157 (0%)
Query: 141 SNIILPVPAFNVINGGSHAGNKLAMQEFMILPTGASSFSEAMKIGSEVYHHLKKVINTKF 200
S++ILPVPAFNVINGGSHAGNKLAMQEFMILP GA SF +AM++G+EVYH LK VI K+
Sbjct: 1 SDLILPVPAFNVINGGSHAGNKLAMQEFMILPVGAESFRDAMRLGAEVYHTLKGVIKDKY 60
Query: 201 GLDATAVGDEGGFAPNILDNKEGLRLIVEAIEKAGYTGKVEIGMDVAASEFFKEGQYDLD 260
G DAT VGDEGGFAPNIL+N E L L+ EAI+KAGYT K+ IGMDVAASEF+++G+YDLD
Sbjct: 61 GKDATNVGDEGGFAPNILENSEALELVKEAIDKAGYTEKIVIGMDVAASEFYRDGKYDLD 120
Query: 261 FKNPNSDKSQWLPADKLTALYQEFIKEYPIVSIEDPM 297
FK+P +D S+++ D+L ALYQ+F+++YP+VSIEDP
Sbjct: 121 FKSP-TDPSRYITGDQLGALYQDFVRDYPVVSIEDPF 156
>d1w6ta1 c.1.11.1 (A:138-433) Enolase {Streptococcus pneumoniae
[TaxId: 1313]}
Length = 296
Score = 187 bits (476), Expect = 1e-58
Identities = 65/160 (40%), Positives = 99/160 (61%), Gaps = 5/160 (3%)
Query: 140 NSNIILPVPAFNVINGGSHAGNKLAMQEFMILPTGASSFSEAMKIGSEVYHHLKKVINTK 199
N+ + LP P N+INGGSH+ +A QEFMILP GA +F EA++ G+E++H LKK++ ++
Sbjct: 1 NTKV-LPTPMMNIINGGSHSDAPIAFQEFMILPVGAPTFKEALRYGAEIFHALKKILKSR 59
Query: 200 FGLDATAVGDEGGFAPNILDNKEGLRLIVEAIEKAGYTG--KVEIGMDVAASEFFKEGQY 257
TAVGDEGGFAP ++G+ I+ AIE AGY V +G D A+SEF+ + +
Sbjct: 60 G--LETAVGDEGGFAPRFEGTEDGVETILAAIEAAGYVPGKDVFLGFDCASSEFYDKERK 117
Query: 258 DLDFKNPNSDKSQWLPADKLTALYQEFIKEYPIVSIEDPM 297
D+ + + + + +E + +YPI++IED M
Sbjct: 118 VYDYTKFEGEGAAVRTSAEQIDYLEELVNKYPIITIEDGM 157
>d2ptza2 d.54.1.1 (A:0-138) Enolase {Trypanosoma brucei [TaxId:
5691]}
Length = 139
Score = 179 bits (456), Expect = 1e-57
Identities = 85/139 (61%), Positives = 107/139 (76%), Gaps = 2/139 (1%)
Query: 1 MPISKIHARQIFDSRGNPTVEVDLTTELGLFRAAVPSGASTGIYEALELRDNDKAHYHGK 60
M I K+H R++ DSRGNPTVEV++TTE G+FR+AVPSGASTG+YEA ELRD DK Y GK
Sbjct: 2 MTIQKVHGREVLDSRGNPTVEVEVTTEKGVFRSAVPSGASTGVYEACELRDGDKKRYVGK 61
Query: 61 GVTKAVGFINNDIAPALLKESFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAK 120
G +AV +N I PAL+ + +Q+E+D M++LDGT NK K GANAILG S+A++K
Sbjct: 62 GCLQAVKNVNEVIGPALIGR--DELKQEELDTLMLRLDGTPNKGKLGANAILGCSMAISK 119
Query: 121 AGAAKKGVPLYKHLADLAG 139
A AA KGVPLY++LA LAG
Sbjct: 120 AAAAAKGVPLYRYLASLAG 138
>d1pdza2 d.54.1.1 (A:1-139) Enolase {European lobster (Homarus
vulgaris) [TaxId: 6707]}
Length = 139
Score = 172 bits (437), Expect = 9e-55
Identities = 95/136 (69%), Positives = 112/136 (82%)
Query: 3 ISKIHARQIFDSRGNPTVEVDLTTELGLFRAAVPSGASTGIYEALELRDNDKAHYHGKGV 62
I+K+ AR IFDSRGNPTVEVDL T GLFRAAVPSGASTG++EALE+RD DK+ YHGK V
Sbjct: 2 ITKVFARTIFDSRGNPTVEVDLYTSKGLFRAAVPSGASTGVHEALEMRDGDKSKYHGKSV 61
Query: 63 TKAVGFINNDIAPALLKESFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAG 122
AV +N+ I P ++K +VTQQKE DEFM KLDGTENKS GANAILGVSLA+ KAG
Sbjct: 62 FNAVKNVNDVIVPEIIKSGLKVTQQKECDEFMCKLDGTENKSSLGANAILGVSLAICKAG 121
Query: 123 AAKKGVPLYKHLADLA 138
AA+ G+PLY+H+A+LA
Sbjct: 122 AAELGIPLYRHIANLA 137
>d2ptza1 c.1.11.1 (A:139-429) Enolase {Trypanosoma brucei [TaxId:
5691]}
Length = 291
Score = 176 bits (447), Expect = 3e-54
Identities = 82/158 (51%), Positives = 107/158 (67%), Gaps = 1/158 (0%)
Query: 142 NIILPVPAFNVINGGSHAGNKLAMQEFMILPTGASSFSEAMKIGSEVYHHLKKVINTKFG 201
+ LPVP FNVINGG HAGN L QEFMI P A+SFSEA+++GSEVYH L+ +I K+G
Sbjct: 2 ELRLPVPCFNVINGGKHAGNALPFQEFMIAPVKATSFSEALRMGSEVYHSLRGIIKKKYG 61
Query: 202 LDATAVGDEGGFAPNILDNKEGLRLIVEAIEKAGYTGKVEIGMDVAASEFFKEGQYDLDF 261
DA VGDEGGFAP I D E L +++EAIE+AG+ GK I MD AASE + E + +
Sbjct: 62 QDAVNVGDEGGFAPPIKDINEPLPILMEAIEEAGHRGKFAICMDCAASETYDEKKQQYNL 121
Query: 262 KNPNSDKSQWLPADKLTALYQEFIKEYPIVSIEDPMLR 299
+ + W+ A++L Y ++ +YPIVSIEDP +
Sbjct: 122 TFKSPEP-TWVTAEQLRETYCKWAHDYPIVSIEDPYDQ 158
>d2fyma2 d.54.1.1 (A:1-139) Enolase {Escherichia coli [TaxId: 562]}
Length = 139
Score = 166 bits (422), Expect = 1e-52
Identities = 86/138 (62%), Positives = 100/138 (72%), Gaps = 3/138 (2%)
Query: 3 ISKIHARQIFDSRGNPTVEVDLTTELGLF-RAAVPSGASTGIYEALELRDNDKAHYHGKG 61
I KI R+I DSRGNPTVE ++ E G AA PSGASTG EALELRD DK+ + GKG
Sbjct: 3 IVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKG 62
Query: 62 VTKAVGFINNDIAPALLKESFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKA 121
VTKAV +N IA AL+ + + Q ID+ MI LDGTENKSKFGANAIL VSLA AKA
Sbjct: 63 VTKAVAAVNGPIAQALIGKDAK--DQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKA 120
Query: 122 GAAKKGVPLYKHLADLAG 139
AA KG+PLY+H+A+L G
Sbjct: 121 AAAAKGMPLYEHIAELNG 138
>d2fyma1 c.1.11.1 (A:140-431) Enolase {Escherichia coli [TaxId:
562]}
Length = 292
Score = 169 bits (429), Expect = 1e-51
Identities = 72/155 (46%), Positives = 101/155 (65%), Gaps = 9/155 (5%)
Query: 145 LPVPAFNVINGGSHAGNKLAMQEFMILPTGASSFSEAMKIGSEVYHHLKKVINTKFGLDA 204
+PVP N+INGG HA N + +QEFMI P GA + EA+++GSEV+HHL KV+ K
Sbjct: 6 MPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKG--MN 63
Query: 205 TAVGDEGGFAPNILDNKEGLRLIVEAIEKAGYTG--KVEIGMDVAASEFFKEGQYDLDFK 262
TAVGDEGG+APN+ N E L +I EA++ AGY + + MD AASEF+K+G+Y
Sbjct: 64 TAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKY----- 118
Query: 263 NPNSDKSQWLPADKLTALYQEFIKEYPIVSIEDPM 297
+ ++ +++ T +E K+YPIVSIED +
Sbjct: 119 VLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGL 153
>d1w6ta2 d.54.1.1 (A:1-137) Enolase {Streptococcus pneumoniae
[TaxId: 1313]}
Length = 137
Score = 159 bits (404), Expect = 8e-50
Identities = 74/133 (55%), Positives = 93/133 (69%), Gaps = 3/133 (2%)
Query: 3 ISKIHARQIFDSRGNPTVEVDLTTELGLF-RAAVPSGASTGIYEALELRDNDKAHYHGKG 61
I+ ++AR++ DSRGNPT+EV++ TE G F R VPSGASTG +EA+ELRD DK+ Y G G
Sbjct: 4 ITDVYAREVLDSRGNPTLEVEVYTESGAFGRGMVPSGASTGEHEAVELRDGDKSRYGGLG 63
Query: 62 VTKAVGFINNDIAPALLKESFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKA 121
KAV +NN IA A++ Q+ ID MI LDGT NK K GANAILGVS+AVA+A
Sbjct: 64 TQKAVDNVNNIIAEAIIGYDV--RDQQAIDRAMIALDGTPNKGKLGANAILGVSIAVARA 121
Query: 122 GAAKKGVPLYKHL 134
A +PLY +L
Sbjct: 122 AADYLEIPLYSYL 134
>d1kkoa1 c.1.11.2 (A:161-411) beta-Methylaspartase {Citrobacter
amalonaticus [TaxId: 35703]}
Length = 251
Score = 71.1 bits (174), Expect = 5e-15
Identities = 20/157 (12%), Positives = 44/157 (28%), Gaps = 45/157 (28%)
Query: 143 IILPVPAFNVINGGSHAGNKLAMQEFMILPTGASSFSEAMKIGSEVYHHLKKVINTKFGL 202
+ +P F G ++ + MIL G A+ ++++
Sbjct: 3 VPEAIPLF-----GQSGDDRYIAVDKMILK-GVDVLPHAL------INNVE--------- 41
Query: 203 DATAVGDEGGFAPNILDNKEGLRLIVEAIEKAGYTGKVEIGMDVAASEFFKEGQYDLDFK 262
+G +G +E +R + + I + + + + D+D
Sbjct: 42 --EKLGFKGEK------LREYVRWLSDRILSLRSSPRYHPTLHIDVYGTIGLIF-DMD-- 90
Query: 263 NPNSDKSQWLPADKLTALYQEFIKEYP--IVSIEDPM 297
+ KE + IE P+
Sbjct: 91 -----------PVRCAEYIASLEKEAQGLPLYIEGPV 116
>d1kcza1 c.1.11.2 (A:161-413) beta-Methylaspartase {Clostridium
tetanomorphum [TaxId: 1553]}
Length = 253
Score = 53.1 bits (127), Expect = 8e-09
Identities = 17/116 (14%), Positives = 31/116 (26%), Gaps = 14/116 (12%)
Query: 184 IGSEVYHHLKKVINTKFGL--DATAVGDEGGFAPNILDNKEGLRLIVEAIEKAGYTGKVE 241
G + Y ++ K+I + + A E E ++ + + I K
Sbjct: 13 SGDDRYDNVDKMIIKEADVLPHALINNVEEKLGLKGEKLLEYVKWLRDRIIKLRVREDYA 72
Query: 242 IGMDVAASEFFKEGQYDLDFKNPNSDKSQWLPADKLTALYQEFIKEYPIVSIEDPM 297
+ Y + D E K + + IE PM
Sbjct: 73 PIFHIDV--------YGTIGAAFDVDIKA---MADYIQTLAEAAKPFHL-RIEGPM 116
>d1a4sa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Baltic cod (Gadus callarias) [TaxId: 8053]}
Length = 503
Score = 31.6 bits (71), Expect = 0.13
Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 15/94 (15%)
Query: 145 LPVPAFNVINGGSHAGNKLAMQEF--MILPTGASSFSEAMKIGSEVYHHLKKVINTKFGL 202
+PV NV+ GG+ G+ L + TG S K+ +K V
Sbjct: 210 VPVGLVNVVQGGAETGSLLCHHPNVAKVSFTG--SVPTGKKVMEMSAKTVKHV------- 260
Query: 203 DATAVGDEGGFAPNILDNKEGLRLIVEAIEKAGY 236
+ GG +P ++ L V A +
Sbjct: 261 ----TLELGGKSPLLIFKDCELENAVRGALMANF 290
>d1pfba_ b.34.13.2 (A:) Polycomb protein, Pc {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 55
Score = 25.5 bits (56), Expect = 1.4
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 256 QYDLDFKNPNSDKSQWLPADKLTALYQEFIKEY 288
+Y + +K N + W P + + I Y
Sbjct: 20 EYRVKWKGWNQRYNTWEPEVNILD--RRLIDIY 50
>d1p6ta2 d.58.17.1 (A:73-151) Potential copper-translocating P-type
ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]}
Length = 79
Score = 26.4 bits (58), Expect = 1.5
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 191 HLKKVINTKFGLDATAVGDEGGFAPNILDNKE-GLRLIVEAIEKAGYTGKVE 241
++K +N G+ V + KE + + EA++K GY K++
Sbjct: 19 RIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKLK 70
>d2dy8a1 b.34.13.2 (A:279-347) ATP-dependent helicase CHD1 (Chromo
domain protein 1) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 69
Score = 25.6 bits (56), Expect = 2.1
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 256 QYDLDFKNPNSDKSQWLPADKLTALYQEFIKEY 288
QY + ++ N D++ W A + L E +K +
Sbjct: 28 QYLVKWRRLNYDEATWENATDIVKLAPEQVKHF 60
>d2b2ya1 b.34.13.2 (A:108-187) ATP-dependent helicase CHD1 (Chromo
domain protein 1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 25.2 bits (55), Expect = 3.8
Identities = 6/33 (18%), Positives = 12/33 (36%)
Query: 256 QYDLDFKNPNSDKSQWLPADKLTALYQEFIKEY 288
Y ++ + W ++ +Q I EY
Sbjct: 43 DYYCKWQGLPYSECSWEDGALISKKFQACIDEY 75
>d1fe0a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Human
(Homo sapiens), HAH1 [TaxId: 9606]}
Length = 66
Score = 24.4 bits (53), Expect = 4.6
Identities = 4/18 (22%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
Query: 227 IVEAIEKAGYTGKVEIGM 244
++ ++K G T +G+
Sbjct: 50 LLATLKKTGKTVSY-LGL 66
>d1osda_ d.58.17.1 (A:) Mercuric ion binding protein MerP {Ralstonia
metallidurans CH34 [TaxId: 266264]}
Length = 72
Score = 24.3 bits (53), Expect = 5.1
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 227 IVEAIEKAGYTGKVE 241
+ +A AGY V+
Sbjct: 57 LTKATADAGYPSSVK 71
>d2ggpb1 d.58.17.1 (B:1-72) Copper transporter domain ccc2a {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 72
Score = 24.3 bits (53), Expect = 6.0
Identities = 8/50 (16%), Positives = 16/50 (32%)
Query: 191 HLKKVINTKFGLDATAVGDEGGFAPNILDNKEGLRLIVEAIEKAGYTGKV 240
+ + G+ + DN+ I E IE G+ ++
Sbjct: 19 TINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIEDCGFDCEI 68
>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Yeast (Hansenula saturnus) [TaxId: 4906]}
Length = 341
Score = 25.4 bits (54), Expect = 8.7
Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 129 PLYK--HLADLAGNSNIILPVPAFNVINGGSHAGNKLAMQEFMIL 171
P+ L+ G+ + + +G + GNKL E+++
Sbjct: 17 PISNLNRLSQHLGSKVNVY-AKREDCNSGLAFGGNKLRKLEYIVP 60
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.135 0.380
Gapped
Lambda K H
0.267 0.0572 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,100,396
Number of extensions: 51375
Number of successful extensions: 188
Number of sequences better than 10.0: 1
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 27
Length of query: 299
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 214
Effective length of database: 1,240,546
Effective search space: 265476844
Effective search space used: 265476844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.5 bits)