BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12656
(291 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VHN6|RM19_DROME 39S ribosomal protein L19, mitochondrial OS=Drosophila melanogaster
GN=mRpL19 PE=2 SV=1
Length = 306
Score = 320 bits (819), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 146/253 (57%), Positives = 196/253 (77%)
Query: 39 KKLSIPQENRFMYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSA 98
+K IP RF+Y EFLPDP++++RN VREKLER DM+ RR ID+P F+VGS+L+VTS+
Sbjct: 54 RKTIIPANYRFVYPEFLPDPKVEWRNLVREKLERLDMLDRRKQIDLPEFYVGSVLAVTSS 113
Query: 99 DKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMYDPTIHNITVLRLEKR 158
D H KT +FVGICI + CGLR F+LRNV+D+ G+E+ Y++YDPTI I VLRLEKR
Sbjct: 114 DPHAAGKTSRFVGICINRDRCGLRARFILRNVIDHQGMEVVYELYDPTILKIEVLRLEKR 173
Query: 159 LDDDLLYLRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWERKGYKGID 218
LDD L YLRDALP+YSTF +ME E L +GAPVP+NDIKV L+PRPW+ RWER+ +G+
Sbjct: 174 LDDSLFYLRDALPEYSTFDENMEAEPLEEGAPVPVNDIKVVLRPRPWLERWERQNLRGVA 233
Query: 219 DVDQHITEKMKGQKKKLEEPWEKYDLMKEYRRTIPEEEQEEIFSEVFSELHQLSLSNKKL 278
++D+++ +K + K+++PWEKYD+MK+YR +IPEEEQ EIF+EV +ELH L L K+
Sbjct: 234 NIDEYLKDKHRLSAAKVQKPWEKYDMMKDYRSSIPEEEQTEIFAEVHTELHALELQRKRN 293
Query: 279 KKSRVYVKPKKTG 291
K+ R ++KPK+
Sbjct: 294 KRKRTFIKPKQLA 306
>sp|Q95Y83|RM19_CAEEL Probable 39S ribosomal protein L19, mitochondrial OS=Caenorhabditis
elegans GN=Y119C1B.4 PE=3 SV=1
Length = 288
Score = 214 bits (546), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 109/241 (45%), Positives = 158/241 (65%), Gaps = 4/241 (1%)
Query: 50 MYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKF 109
+Y +FL P RN ++E+LER DM++RR IDIP F+VGSI++VTS+DK+ +K +F
Sbjct: 48 IYPDFLQSPVWNRRNALKEELERQDMLERRMNIDIPEFYVGSIVAVTSSDKNLGSKEHRF 107
Query: 110 VGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRDA 169
VGICI++ GL H+F LRN ++N+G+E+ YD+Y+PTI I L+LEKRLD+DL YL DA
Sbjct: 108 VGICIRREKEGLLHQFTLRNTIENIGVEVVYDLYNPTIKKIETLKLEKRLDNDLSYLVDA 167
Query: 170 LPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWERKGYKGIDDVDQHITEKMK 229
LP+YSTF F MEP+ G P+P+N+ KVKLK PW RWE +GI+D T K
Sbjct: 168 LPEYSTFDFHMEPQAHPAGTPIPVNECKVKLKTPPWTRRWEVASVRGIEDTWTQATPWFK 227
Query: 230 GQ-KKKLEEPWEKYDLMKEYRRTIPEEEQ---EEIFSEVFSELHQLSLSNKKLKKSRVYV 285
+ K + +EKYDL+ +YR + +E++ ++ + E H L+ +++ KS
Sbjct: 228 RKLHKTIVNDYEKYDLIADYRTSSTKEQEVFVQKQMQKFEKERHAAGLTRRRILKSAAAY 287
Query: 286 K 286
K
Sbjct: 288 K 288
>sp|Q5R8M4|RM19_PONAB 39S ribosomal protein L19, mitochondrial OS=Pongo abelii GN=MRPL19
PE=2 SV=1
Length = 292
Score = 199 bits (506), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 102/218 (46%), Positives = 147/218 (67%), Gaps = 15/218 (6%)
Query: 38 EKKLSIPQENRFMYQEFLP-----DPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSI 92
+K+ + E RF+ EF+P DP LKF ++ER DM++RR V+ IP F+VGSI
Sbjct: 64 DKRRPVELERRFLSPEFIPPRGRTDP-LKF------QMERKDMLERRKVLHIPEFYVGSI 116
Query: 93 LSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMYDPTIHNITV 152
L VT+AD + K +F+GICIQ+ GL F+LRNV++ G+EI +++Y+P + I V
Sbjct: 117 LRVTTADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFELYNPRVQEIQV 176
Query: 153 LRLEKRLDDDLLYLRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWERK 212
++LEKRLDD LLYLRDALP+YSTF +M+PE VP+N++KVK+KP+PW RWER
Sbjct: 177 VKLEKRLDDSLLYLRDALPEYSTFDVNMKPEVQEPNQKVPVNELKVKMKPKPWSKRWERP 236
Query: 213 GY--KGIDDVDQHITEKMKGQKKKLEEPWEKYDLMKEY 248
+ KGI D +TE+ + +K +PW ++D+M+EY
Sbjct: 237 NFNIKGI-RFDLCLTEEQMKEAQKWSQPWLEFDMMREY 273
>sp|Q2HJI0|RM19_BOVIN 39S ribosomal protein L19, mitochondrial OS=Bos taurus GN=MRPL19
PE=1 SV=1
Length = 292
Score = 197 bits (501), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 98/206 (47%), Positives = 143/206 (69%), Gaps = 5/206 (2%)
Query: 45 QENRFMYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPN 104
+E+RF+ EF+P P + N ++ ++ER DM++RR ++ IP F+VGSIL VT+AD +
Sbjct: 71 RESRFLSPEFIP-PRGR-TNPLKFQIERKDMLERRKILHIPEFYVGSILRVTTADPYANG 128
Query: 105 KTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLL 164
KT +F+GICIQ+ GL F+LRN ++ G+EI +++Y+P I I V++LEKRLDD LL
Sbjct: 129 KTSQFLGICIQRSGKGLGATFILRNTIEGQGVEICFELYNPRIQEIQVVKLEKRLDDSLL 188
Query: 165 YLRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWERKGY--KGIDDVDQ 222
YLRDALP+YSTF +M+P VPIN +KVK+KP+PW RWER + KGI D
Sbjct: 189 YLRDALPEYSTFDMNMKPVAQEPSREVPINQLKVKMKPKPWSKRWERPKFNVKGI-RFDL 247
Query: 223 HITEKMKGQKKKLEEPWEKYDLMKEY 248
+TE+ + +K +PW ++D+M+EY
Sbjct: 248 CLTEEQMKEAQKWSQPWLEFDMMREY 273
>sp|P49406|RM19_HUMAN 39S ribosomal protein L19, mitochondrial OS=Homo sapiens GN=MRPL19
PE=1 SV=2
Length = 292
Score = 196 bits (497), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 100/210 (47%), Positives = 142/210 (67%), Gaps = 15/210 (7%)
Query: 46 ENRFMYQEFLP-----DPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADK 100
E RF+ EF+P DP LKF ++ER DM++RR V+ IP F+VGSIL VT+AD
Sbjct: 72 ERRFLSPEFIPRRGRTDP-LKF------QIERKDMLERRKVLHIPEFYVGSILRVTTADP 124
Query: 101 HDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMYDPTIHNITVLRLEKRLD 160
+ K +F+GICIQ+ GL F+LRNV++ G+EI +++Y+P + I V++LEKRLD
Sbjct: 125 YASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFELYNPRVQEIQVVKLEKRLD 184
Query: 161 DDLLYLRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWERKGY--KGID 218
D LLYLRDALP+YSTF +M+P VP+N++KVK+KP+PW RWER + KGI
Sbjct: 185 DSLLYLRDALPEYSTFDVNMKPVVQEPNQKVPVNELKVKMKPKPWSKRWERPNFNIKGI- 243
Query: 219 DVDQHITEKMKGQKKKLEEPWEKYDLMKEY 248
D +TE+ + +K +PW ++D+M+EY
Sbjct: 244 RFDLCLTEQQMKEAQKWNQPWLEFDMMREY 273
>sp|Q9D338|RM19_MOUSE 39S ribosomal protein L19, mitochondrial OS=Mus musculus GN=Mrpl19
PE=2 SV=1
Length = 292
Score = 194 bits (494), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 98/205 (47%), Positives = 140/205 (68%), Gaps = 5/205 (2%)
Query: 46 ENRFMYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNK 105
E RF+ EF+P P + N ++ K+ER DM+ RR V+ IP F+VGSIL VT+AD + K
Sbjct: 72 ERRFLSPEFIP-PRGR-TNPLKFKIERKDMLDRRKVLPIPEFYVGSILRVTTADPYASGK 129
Query: 106 TRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLY 165
T +F+GICI++ GL F LRN ++ G+EI +++Y+P I I V++LEKRLDD+LLY
Sbjct: 130 TSQFLGICIKRSGNGLGATFTLRNTIEGQGVEICFELYNPRIQEIQVVKLEKRLDDNLLY 189
Query: 166 LRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWERKGY--KGIDDVDQH 223
LRDALP+YSTF +M+P VP+N +KVK+KP+PW RWER + KGI D
Sbjct: 190 LRDALPEYSTFDVNMKPVPQEACQEVPVNKLKVKMKPKPWSKRWERPNFNIKGI-RFDLA 248
Query: 224 ITEKMKGQKKKLEEPWEKYDLMKEY 248
+TE+ + +K +PW ++D+M+EY
Sbjct: 249 LTEEQMKEAQKWNKPWIEFDMMREY 273
>sp|P82413|RK19_SPIOL 50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea
GN=RPL19 PE=1 SV=2
Length = 233
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%)
Query: 84 IPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMY 143
+P G I+ + + + + GI I ++ G+ +R ++ +G+EI + +Y
Sbjct: 140 VPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTTIRIRRIIAGVGVEIVFPLY 199
Query: 144 DPTIHNITVLRLEKRLDDDLLYLRDALPQYSTF 176
P I I V+ K L YLRD LP+ STF
Sbjct: 200 SPNIKEIKVVSHRKVRKARLYYLRDKLPRLSTF 232
>sp|Q7MA03|RL19_WOLSU 50S ribosomal protein L19 OS=Wolinella succinogenes (strain ATCC
29543 / DSM 1740 / LMG 7466 / NCTC 11488 / FDC 602W)
GN=rplS PE=3 SV=1
Length = 118
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 62 FRNQVREKLERSDMIKRRSVIDIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCG 120
RN+ E E++ + + +IP F G L V + D + + F GICI R G
Sbjct: 1 MRNRYIESFEKAQIADK----NIPQFKAGDTLRVGVKIQEGDKTRVQNFEGICISVRGTG 56
Query: 121 LRHEFVLRNV-VDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRD 168
F +R + +N+G+E + +Y ++ ++T+LR+ + L YLRD
Sbjct: 57 TGKTFTIRKMGANNVGVERIFPLYSDSLESVTLLRVGRVRRAKLYYLRD 105
>sp|A0RPR5|RL19_CAMFF 50S ribosomal protein L19 OS=Campylobacter fetus subsp. fetus
(strain 82-40) GN=rplS PE=3 SV=1
Length = 118
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 83 DIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDN-LGIEIAY 140
+P F G L + K D + + F GICI +R G F++R + N +G+E +
Sbjct: 18 SVPDFRAGDTLRIAIRIKEGDKTRVQNFEGICIARRGSGSGETFIIRKIGANSVGVERIF 77
Query: 141 DMYDPTIHNITVLRLEKRLDDDLLYLRD 168
+Y ++ +ITVLR + L YLRD
Sbjct: 78 PIYSESLESITVLRRGRIRRSKLFYLRD 105
>sp|A7GZB0|RL19_CAMC5 50S ribosomal protein L19 OS=Campylobacter curvus (strain 525.92)
GN=rplS PE=3 SV=1
Length = 118
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 84 IPSFFVGSILSVTSADKHDPNKTR--KFVGICIQKRYCGLRHEFVLRNVVDN-LGIEIAY 140
+P F G L V + H+ +KTR F GICI +R G+ F++R + N +G+E +
Sbjct: 19 VPDFRAGDTLRV-AIRIHEGDKTRVQNFEGICIARRGSGVGETFIIRKIGANSVGVERIF 77
Query: 141 DMYDPTIHNITVLRLEKRLDDDLLYLRD 168
+Y +I I VLR + L YLRD
Sbjct: 78 PIYSDSIEEIVVLRKGRVRRAKLFYLRD 105
>sp|C1DSZ9|RL19_AZOVD 50S ribosomal protein L19 OS=Azotobacter vinelandii (strain DJ /
ATCC BAA-1303) GN=rplS PE=3 SV=1
Length = 116
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 64 NQVREKLERSDMIKRRSVIDIPSFFVG-SILSVTSADKHDPNKTRKFVGICIQKRYCGLR 122
N++ ++LE M K +IP+F G +++ + + + + F G+ I KR GL
Sbjct: 3 NKIIQQLEAEQMSK-----EIPAFAPGDTVIVQVKVKEGERQRLQAFEGVVIGKRNRGLN 57
Query: 123 HEFVLRNVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRD 168
F +R + +G+E + Y P + +ITV R L YLRD
Sbjct: 58 SAFTVRKISSGVGVERTFQTYSPLVDSITVKRRGDVRKAKLYYLRD 103
>sp|Q1I5Z1|RL19_PSEE4 50S ribosomal protein L19 OS=Pseudomonas entomophila (strain L48)
GN=rplS PE=3 SV=1
Length = 116
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 64 NQVREKLERSDMIKRRSVIDIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLR 122
N++ ++LE M K +IP+F G + V + D ++ + F G+ I KR GL
Sbjct: 3 NKIIQQLEAEQMSK-----EIPTFAPGDTVVVQVKVKEGDRSRLQAFEGVVIAKRNRGLN 57
Query: 123 HEFVLRNVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRD 168
F +R + +G+E + Y P I ++ V R L YLRD
Sbjct: 58 SAFTVRKISSGVGVERTFQTYSPQIDSLAVKRRGDVRKAKLYYLRD 103
>sp|A1RMB5|RL19_SHESW 50S ribosomal protein L19 OS=Shewanella sp. (strain W3-18-1)
GN=rplS PE=3 SV=1
Length = 117
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 83 DIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 141
D+P+F G + V + D + + F G+ I KR GL F +R + + G+E A+
Sbjct: 16 DVPAFGAGDTVVVQVRVKEGDKERLQAFEGVVIAKRNRGLHSAFTVRKISNGEGVERAFQ 75
Query: 142 MYDPTIHNITVLRLEKRLDDDLLYLRD 168
+ P I +I V R + L YLRD
Sbjct: 76 THSPLIASIEVKRRGRVRRAKLYYLRD 102
>sp|Q0HSK4|RL19_SHESR 50S ribosomal protein L19 OS=Shewanella sp. (strain MR-7) GN=rplS
PE=3 SV=1
Length = 117
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 83 DIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 141
D+P+F G + V + D + + F G+ I KR GL F +R + + G+E A+
Sbjct: 16 DVPAFGAGDTVVVQVRVKEGDKERLQAFEGVVIAKRNRGLHSAFTVRKISNGEGVERAFQ 75
Query: 142 MYDPTIHNITVLRLEKRLDDDLLYLRD 168
+ P I +I V R + L YLRD
Sbjct: 76 THSPLIASIEVKRRGRVRRAKLYYLRD 102
>sp|Q0HGB1|RL19_SHESM 50S ribosomal protein L19 OS=Shewanella sp. (strain MR-4) GN=rplS
PE=3 SV=1
Length = 117
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 83 DIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 141
D+P+F G + V + D + + F G+ I KR GL F +R + + G+E A+
Sbjct: 16 DVPAFGAGDTVVVQVRVKEGDKERLQAFEGVVIAKRNRGLHSAFTVRKISNGEGVERAFQ 75
Query: 142 MYDPTIHNITVLRLEKRLDDDLLYLRD 168
+ P I +I V R + L YLRD
Sbjct: 76 THSPLIASIEVKRRGRVRRAKLYYLRD 102
>sp|A0KZM0|RL19_SHESA 50S ribosomal protein L19 OS=Shewanella sp. (strain ANA-3) GN=rplS
PE=3 SV=1
Length = 117
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 83 DIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 141
D+P+F G + V + D + + F G+ I KR GL F +R + + G+E A+
Sbjct: 16 DVPAFGAGDTVVVQVRVKEGDKERLQAFEGVVIAKRNRGLHSAFTVRKISNGEGVERAFQ 75
Query: 142 MYDPTIHNITVLRLEKRLDDDLLYLRD 168
+ P I +I V R + L YLRD
Sbjct: 76 THSPLIASIEVKRRGRVRRAKLYYLRD 102
>sp|A4Y4L6|RL19_SHEPC 50S ribosomal protein L19 OS=Shewanella putrefaciens (strain CN-32
/ ATCC BAA-453) GN=rplS PE=3 SV=1
Length = 117
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 83 DIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 141
D+P+F G + V + D + + F G+ I KR GL F +R + + G+E A+
Sbjct: 16 DVPAFGAGDTVVVQVRVKEGDKERLQAFEGVVIAKRNRGLHSAFTVRKISNGEGVERAFQ 75
Query: 142 MYDPTIHNITVLRLEKRLDDDLLYLRD 168
+ P I +I V R + L YLRD
Sbjct: 76 THSPLIASIEVKRRGRVRRAKLYYLRD 102
>sp|Q8EH70|RL19_SHEON 50S ribosomal protein L19 OS=Shewanella oneidensis (strain MR-1)
GN=rplS PE=3 SV=1
Length = 117
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 83 DIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 141
D+P+F G + V + D + + F G+ I KR GL F +R + + G+E A+
Sbjct: 16 DVPAFGAGDTVVVQVRVKEGDKERLQAFEGVVIAKRNRGLHSAFTVRKISNGEGVERAFQ 75
Query: 142 MYDPTIHNITVLRLEKRLDDDLLYLRD 168
+ P I +I V R + L YLRD
Sbjct: 76 THSPLIASIEVKRRGRVRRAKLYYLRD 102
>sp|A9L5P8|RL19_SHEB9 50S ribosomal protein L19 OS=Shewanella baltica (strain OS195)
GN=rplS PE=3 SV=1
Length = 117
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 83 DIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 141
D+P+F G + V + D + + F G+ I KR GL F +R + + G+E A+
Sbjct: 16 DVPAFGAGDTVVVQVRVKEGDKERLQAFEGVVIAKRNRGLHSAFTVRKISNGEGVERAFQ 75
Query: 142 MYDPTIHNITVLRLEKRLDDDLLYLRD 168
+ P I +I V R + L YLRD
Sbjct: 76 THSPLIASIEVKRRGRVRRAKLYYLRD 102
>sp|A6WKR9|RL19_SHEB8 50S ribosomal protein L19 OS=Shewanella baltica (strain OS185)
GN=rplS PE=3 SV=1
Length = 117
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 83 DIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 141
D+P+F G + V + D + + F G+ I KR GL F +R + + G+E A+
Sbjct: 16 DVPAFGAGDTVVVQVRVKEGDKERLQAFEGVVIAKRNRGLHSAFTVRKISNGEGVERAFQ 75
Query: 142 MYDPTIHNITVLRLEKRLDDDLLYLRD 168
+ P I +I V R + L YLRD
Sbjct: 76 THSPLIASIEVKRRGRVRRAKLYYLRD 102
>sp|A3D1W8|RL19_SHEB5 50S ribosomal protein L19 OS=Shewanella baltica (strain OS155 /
ATCC BAA-1091) GN=rplS PE=3 SV=1
Length = 117
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 83 DIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 141
D+P+F G + V + D + + F G+ I KR GL F +R + + G+E A+
Sbjct: 16 DVPAFGAGDTVVVQVRVKEGDKERLQAFEGVVIAKRNRGLHSAFTVRKISNGEGVERAFQ 75
Query: 142 MYDPTIHNITVLRLEKRLDDDLLYLRD 168
+ P I +I V R + L YLRD
Sbjct: 76 THSPLIASIEVKRRGRVRRAKLYYLRD 102
>sp|B8EBP0|RL19_SHEB2 50S ribosomal protein L19 OS=Shewanella baltica (strain OS223)
GN=rplS PE=3 SV=1
Length = 117
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 83 DIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 141
D+P+F G + V + D + + F G+ I KR GL F +R + + G+E A+
Sbjct: 16 DVPAFGAGDTVVVQVRVKEGDKERLQAFEGVVIAKRNRGLHSAFTVRKISNGEGVERAFQ 75
Query: 142 MYDPTIHNITVLRLEKRLDDDLLYLRD 168
+ P I +I V R + L YLRD
Sbjct: 76 THSPLIASIEVKRRGRVRRAKLYYLRD 102
>sp|A7ZDX6|RL19_CAMC1 50S ribosomal protein L19 OS=Campylobacter concisus (strain 13826)
GN=rplS PE=3 SV=1
Length = 118
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 63 RNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTR--KFVGICIQKRYCG 120
RN+ E E + + + +IP F G L V + H+ +KTR F GICI +R G
Sbjct: 2 RNKYIEAFENAQIAGK----NIPDFRAGDTLRVAT-RIHEGDKTRIQNFEGICIARRGSG 56
Query: 121 LRHEFVLRNVVDN-LGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRD 168
F++R + N +G+E + ++ +I I VLR + L YLR+
Sbjct: 57 TGETFIIRKIGANSVGVERIFPIFSDSIEEIKVLRKGRVRRAKLFYLRE 105
>sp|Q3A2E9|RL19_PELCD 50S ribosomal protein L19 OS=Pelobacter carbinolicus (strain DSM
2380 / Gra Bd 1) GN=rplS PE=3 SV=1
Length = 115
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 83 DIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 141
DIP+F G L V + D + + F G+CI++ GL F +R + D +G+E +
Sbjct: 15 DIPAFKAGDTLRVHVKIVEGDKRRIQVFQGVCIKRHNKGLGSTFTVRKISDGMGVERVFP 74
Query: 142 MYDPTIHNITVLRLEKRLDDDLLYLR 167
++ P I I V+ + + L YLR
Sbjct: 75 LHSPNIDKIEVMMVGRVRRAKLYYLR 100
>sp|Q8EWU9|RL19_MYCPE 50S ribosomal protein L19 OS=Mycoplasma penetrans (strain HF-2)
GN=rplS PE=3 SV=1
Length = 145
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 83 DIPSFFVG-SILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 141
DIP F G +I+ +++ ++ +KF G+ I++R GL ++R +G+E +
Sbjct: 23 DIPEFRSGDTIIVHNKIIENNKSRIQKFEGVVIRRRGSGLSETIIVRKESSGIGVERIFQ 82
Query: 142 MYDPTIHNITVLRLEKRLDDDLLYLRD 168
++ P I I V+RL K L YLR+
Sbjct: 83 LHSPQIEKIEVIRLGKVRRAYLTYLRE 109
>sp|Q74FG1|RL19_GEOSL 50S ribosomal protein L19 OS=Geobacter sulfurreducens (strain ATCC
51573 / DSM 12127 / PCA) GN=rplS PE=3 SV=1
Length = 118
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 83 DIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 141
+IP F G L V + D ++ + F G+CI ++ G+R F +R + +N+G+E +
Sbjct: 15 NIPPFKPGDTLKVHVKIVEGDKSRIQAFQGVCISRQNGGIRESFTVRKISNNIGVERVFP 74
Query: 142 MYDPTIHNITVLRLEKRLDDDLLYLR 167
++ PT+ I V+ L YLR
Sbjct: 75 LHSPTVDAIEVITRGHVRRAKLYYLR 100
>sp|A4SW76|RL19_POLSQ 50S ribosomal protein L19 OS=Polynucleobacter necessarius subsp.
asymbioticus (strain DSM 18221 / CIP 109841 /
QLW-P1DMWA-1) GN=rplS PE=3 SV=1
Length = 129
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Query: 68 EKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNK-TRKFVGICIQKRYCGLRHEFV 126
EK+E+ ++ + + +PSF G + V K T+ F G+ I KR GL F+
Sbjct: 5 EKIEQEEIARLSANKTLPSFAPGDTVVVGVNVVEGARKRTQAFEGVVIAKRNRGLNSSFI 64
Query: 127 LRNVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRD 168
+R + G+E + Y P I +I V R L YLRD
Sbjct: 65 VRKISSGEGVERTFQTYSPLIASIEVKRRGDVRRAKLYYLRD 106
>sp|A7I0V8|RL19_CAMHC 50S ribosomal protein L19 OS=Campylobacter hominis (strain ATCC
BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=rplS PE=3
SV=1
Length = 118
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 83 DIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDN-LGIEIAY 140
++P F G L + K + + + F GICI +R G+ F++R + N +G+E +
Sbjct: 18 NVPDFRAGDTLKLAIRIKEGEKTRIQNFEGICIARRGSGVGETFIVRKIGANGIGVERIF 77
Query: 141 DMYDPTIHNITVLRLEKRLDDDLLYLRD 168
+Y ++ NI VLR L YLRD
Sbjct: 78 PIYSESLENIEVLRKGNVRRSKLFYLRD 105
>sp|B1JDE2|RL19_PSEPW 50S ribosomal protein L19 OS=Pseudomonas putida (strain W619)
GN=rplS PE=3 SV=1
Length = 116
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 64 NQVREKLERSDMIKRRSVIDIPSFFVG-SILSVTSADKHDPNKTRKFVGICIQKRYCGLR 122
N++ ++LE M K +IP+F G +I+ + + ++ + F G+ I KR GL
Sbjct: 3 NKIIQQLEAEQMSK-----EIPTFAPGDTIVVQVKVKEGERSRLQAFEGVVIAKRNRGLN 57
Query: 123 HEFVLRNVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRD 168
F +R + +G+E + Y P I ++ V R L YLRD
Sbjct: 58 SAFTVRKISSGVGVERTFQTYSPQIDSLAVKRRGDVRKAKLYYLRD 103
>sp|Q88MV3|RL19_PSEPK 50S ribosomal protein L19 OS=Pseudomonas putida (strain KT2440)
GN=rplS PE=3 SV=1
Length = 116
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 64 NQVREKLERSDMIKRRSVIDIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLR 122
N++ ++LE M K +IP+F G + V + + ++ + F G+ I KR GL
Sbjct: 3 NKIIQQLEAEQMSK-----EIPTFAPGDTVVVQVKVKEGERSRLQAFEGVVIAKRNRGLN 57
Query: 123 HEFVLRNVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRD 168
F +R + +G+E + Y P I ++ V R L YLRD
Sbjct: 58 SAFTVRKISSGVGVERTFQTYSPQIDSLAVKRRGDVRKAKLYYLRD 103
>sp|B0KRI4|RL19_PSEPG 50S ribosomal protein L19 OS=Pseudomonas putida (strain GB-1)
GN=rplS PE=3 SV=1
Length = 116
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 64 NQVREKLERSDMIKRRSVIDIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLR 122
N++ ++LE M K +IP+F G + V + + ++ + F G+ I KR GL
Sbjct: 3 NKIIQQLEAEQMSK-----EIPTFAPGDTVVVQVKVKEGERSRLQAFEGVVIAKRNRGLN 57
Query: 123 HEFVLRNVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRD 168
F +R + +G+E + Y P I ++ V R L YLRD
Sbjct: 58 SAFTVRKISSGVGVERTFQTYSPQIDSLAVKRRGDVRKAKLYYLRD 103
>sp|A5W8C0|RL19_PSEP1 50S ribosomal protein L19 OS=Pseudomonas putida (strain F1 / ATCC
700007) GN=rplS PE=3 SV=1
Length = 116
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 64 NQVREKLERSDMIKRRSVIDIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLR 122
N++ ++LE M K +IP+F G + V + + ++ + F G+ I KR GL
Sbjct: 3 NKIIQQLEAEQMSK-----EIPTFAPGDTVVVQVKVKEGERSRLQAFEGVVIAKRNRGLN 57
Query: 123 HEFVLRNVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRD 168
F +R + +G+E + Y P I ++ V R L YLRD
Sbjct: 58 SAFTVRKISSGVGVERTFQTYSPQIDSLAVKRRGDVRKAKLYYLRD 103
>sp|Q30TE5|RL19_SULDN 50S ribosomal protein L19 OS=Sulfurimonas denitrificans (strain
ATCC 33889 / DSM 1251) GN=rplS PE=3 SV=1
Length = 119
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 62 FRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCG 120
RN+ E E++ ++ + +IP F G + + K D + + + G+CI KR G
Sbjct: 1 MRNKYIENFEKAQVVGK----NIPDFRAGDTVRLAVTIKEGDKTRIQNYEGVCIAKRGQG 56
Query: 121 LRHEFVLRNVVDN-LGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRD 168
+R + N +GIE + +Y +I+ ITV+R + L YLRD
Sbjct: 57 TGQTITVRKIGANSIGIERIFPIYSDSINEITVIRRGRVRRAKLFYLRD 105
>sp|Q2VZV5|RL19_MAGSA 50S ribosomal protein L19 OS=Magnetospirillum magneticum (strain
AMB-1 / ATCC 700264) GN=rplS PE=3 SV=1
Length = 148
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 68 EKLERSDMIKRRSVIDIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLRHEFV 126
E+LE+ + K + +PSF G L V + + + + + G+CI ++ GL FV
Sbjct: 6 EQLEKEQIEKLTADRGVPSFAPGDTLKVNVKVIEGNRERVQAYEGVCIARKNDGLNSSFV 65
Query: 127 LRNVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRD 168
+R + G+E + +Y P I +I V+R L YLRD
Sbjct: 66 VRKISYGEGVERIFPLYSPNIASIEVVRRGDVRRAKLYYLRD 107
>sp|Q5FGP4|RL19_EHRRG 50S ribosomal protein L19 OS=Ehrlichia ruminantium (strain Gardel)
GN=rplS PE=3 SV=2
Length = 125
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 83 DIPSFFVGSILSVTSADKHDPN-KTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 141
+IP F G L VT + + F G+CI+KR GL F LR + N I++
Sbjct: 20 EIPKFKSGDTLRVTMKIFDSAGERIQTFEGVCIKKRNNGLHSSFTLRKISYNESIQLQIF 79
Query: 142 MYDPTIHNITVLRLEKRLDDDLLYL 166
+Y PTI +I V++ K L Y+
Sbjct: 80 LYSPTIESIEVVKFGKVRRAKLYYM 104
>sp|Q97I93|RL19_CLOAB 50S ribosomal protein L19 OS=Clostridium acetobutylicum (strain
ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
GN=rplS PE=3 SV=1
Length = 114
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 83 DIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 141
D+PSF VG + + K + + + F G I+++ GLR F +R V +G+E +
Sbjct: 16 DLPSFNVGDTVRIEVRIKEGEKERLQAFEGTVIKRQNGGLRETFTVRRVAYGVGVERTFP 75
Query: 142 MYDPTIHNITVLRLEKRLDDDLLYLRDALPQYS 174
+ P I + V+R K L YLRD + + +
Sbjct: 76 LNAPVIAGLKVVRRGKVRRAKLYYLRDRVGKAA 108
>sp|A4VIT8|RL19_PSEU5 50S ribosomal protein L19 OS=Pseudomonas stutzeri (strain A1501)
GN=rplS PE=3 SV=1
Length = 116
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 6/105 (5%)
Query: 64 NQVREKLERSDMIKRRSVIDIPSFFVG-SILSVTSADKHDPNKTRKFVGICIQKRYCGLR 122
N++ ++LE M K +IP F G +++ + D + + F G+ I KR GL
Sbjct: 3 NKIIQQLEAEQMTK-----EIPPFAPGDTVIVQVKVKEGDRQRLQAFEGVVIGKRNRGLN 57
Query: 123 HEFVLRNVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLR 167
F +R + + +G+E + Y P + +I+V R L YLR
Sbjct: 58 SAFTVRKISNGVGVERTFQSYSPMVDSISVKRRGDVRKAKLYYLR 102
>sp|C0ZFN0|RL19_BREBN 50S ribosomal protein L19 OS=Brevibacillus brevis (strain 47 / JCM
6285 / NBRC 100599) GN=rplS PE=3 SV=1
Length = 115
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 6/112 (5%)
Query: 64 NQVREKLERSDMIKRRSVIDIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLR 122
NQ+ +LE++ + + DIP+F G + V + + + F G+CI++R G+
Sbjct: 2 NQIIRELEKAQLKQ-----DIPAFRPGDTVRVHVKVIEGQRERIQLFEGVCIRRRGTGIS 56
Query: 123 HEFVLRNVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRDALPQYS 174
F R + +G+E + ++ P I I ++R K L YLRD + + +
Sbjct: 57 ETFTARKISYGVGVERTFPVHTPKIDKIEIVRHGKVRRAKLYYLRDRVGKAA 108
>sp|Q4KHQ5|RL19_PSEF5 50S ribosomal protein L19 OS=Pseudomonas fluorescens (strain Pf-5 /
ATCC BAA-477) GN=rplS PE=3 SV=1
Length = 116
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 64 NQVREKLERSDMIKRRSVIDIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLR 122
N++ LE M K +IP+F G + V + D ++ + F G+ I KR G+
Sbjct: 3 NKIILALEAEQMTK-----EIPAFAPGDTIVVQVKVKEGDRSRLQAFEGVVIAKRNRGVN 57
Query: 123 HEFVLRNVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRD 168
F +R + + +G+E + Y P I ++ V R L YLRD
Sbjct: 58 SAFTVRKISNGVGVERTFQTYSPQIDSMAVKRRGDVRKAKLYYLRD 103
>sp|A4XXT4|RL19_PSEMY 50S ribosomal protein L19 OS=Pseudomonas mendocina (strain ymp)
GN=rplS PE=3 SV=1
Length = 116
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 64 NQVREKLERSDMIKRRSVIDIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLR 122
N++ + LE M K +IP+F G + V + D + + F G+ I KR GL
Sbjct: 3 NKIIQMLEAEQMNK-----EIPTFAPGDTVVVQVKVKEGDRQRLQAFEGVVIAKRNRGLN 57
Query: 123 HEFVLRNVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRD 168
F +R + +G+E + Y P + +++V R L YLRD
Sbjct: 58 SAFTVRKISSGVGVERTFQTYSPLVDSLSVKRRGDVRKAKLYYLRD 103
>sp|A6LSN2|RL19_CLOB8 50S ribosomal protein L19 OS=Clostridium beijerinckii (strain ATCC
51743 / NCIMB 8052) GN=rplS PE=3 SV=1
Length = 116
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 83 DIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 141
D+P F +G + V + + + + F G I+K+ GLR F +R V G+E +
Sbjct: 16 DLPKFAIGDTIKVYVKIQEGNKERVQMFEGTVIKKQNGGLRETFTVRRVAYGTGVERTFP 75
Query: 142 MYDPTIHNITVLRLEKRLDDDLLYLRDALPQYS 174
M P I I + R K L YLRD + + +
Sbjct: 76 MNAPIIDKIEIARKGKVRRAKLYYLRDRVGKSA 108
>sp|Q3KHJ1|RL19_PSEPF 50S ribosomal protein L19 OS=Pseudomonas fluorescens (strain Pf0-1)
GN=rplS PE=3 SV=1
Length = 116
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 64 NQVREKLERSDMIKRRSVIDIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLR 122
N++ LE M K +IP+F G + V + D ++ + F G+ I KR G+
Sbjct: 3 NKIILALEAEQMTK-----EIPTFAPGDTIVVQVKVKEGDRSRLQAFEGVVIAKRNRGVN 57
Query: 123 HEFVLRNVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRD 168
F +R + + +G+E + Y P I ++ V R L YLRD
Sbjct: 58 SAFTVRKISNGVGVERTFQTYSPQIDSMAVKRRGDVRKAKLYYLRD 103
>sp|C3K1G8|RL19_PSEFS 50S ribosomal protein L19 OS=Pseudomonas fluorescens (strain SBW25)
GN=rplS PE=3 SV=1
Length = 116
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 64 NQVREKLERSDMIKRRSVIDIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLR 122
N++ LE M K +IP+F G + V + D ++ + F G+ I KR G+
Sbjct: 3 NKIILALEAEQMTK-----EIPTFAPGDTIVVQVKVKEGDRSRLQAFEGVVIAKRNRGVN 57
Query: 123 HEFVLRNVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRD 168
F +R + + +G+E + Y P I ++ V R L YLRD
Sbjct: 58 SAFTVRKISNGVGVERTFQTYSPQIDSMAVKRRGDVRKAKLYYLRD 103
>sp|Q7V2K1|RL19_PROMP 50S ribosomal protein L19 OS=Prochlorococcus marinus subsp.
pastoris (strain CCMP1986 / MED4) GN=rplS PE=3 SV=1
Length = 160
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 70/151 (46%), Gaps = 11/151 (7%)
Query: 25 KNSPLQFENAENGEKKLSIPQENRFMYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDI 84
+ + L+ N + +L++ ++ + E + L N ++E ER + K+ +
Sbjct: 12 QETELEITNETDTTTELTVEKQGK----ELIAQTNLSSSNLIKE-FEREQLKKQ-----L 61
Query: 85 PSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMY 143
P +VG + V + + + + + G+ I KR+ GL +R + +G+E + ++
Sbjct: 62 PEIYVGDTVKVGVKITEGNKERVQPYEGVVIAKRHGGLHQTITVRRIFQGIGVERVFMLH 121
Query: 144 DPTIHNITVLRLEKRLDDDLLYLRDALPQYS 174
P + ++ V R K L YLRD + + +
Sbjct: 122 SPQVASLKVERRGKVRRAKLFYLRDRVGKAT 152
>sp|C6E5I6|RL19_GEOSM 50S ribosomal protein L19 OS=Geobacter sp. (strain M21) GN=rplS
PE=3 SV=1
Length = 118
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 83 DIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 141
+IP F G + V + D ++ + F G+C+ ++ G+R F +R + + +G+E +
Sbjct: 15 NIPKFIPGDTIKVQVKIVEGDKSRIQAFQGVCLGRQNGGIRESFTVRKISNGVGVERVFP 74
Query: 142 MYDPTIHNITVLRLEKRLDDDLLYLR 167
++ P+I I V+ + L YLR
Sbjct: 75 LHSPSIEAIEVVTRGQVRRAKLYYLR 100
>sp|B5EBC7|RL19_GEOBB 50S ribosomal protein L19 OS=Geobacter bemidjiensis (strain Bem /
ATCC BAA-1014 / DSM 16622) GN=rplS PE=3 SV=1
Length = 118
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 83 DIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 141
+IP F G + V + D ++ + F G+C+ ++ G+R F +R + + +G+E +
Sbjct: 15 NIPKFIPGDTIKVQVKIVEGDKSRIQAFQGVCLGRQNGGIRESFTVRKISNGVGVERVFP 74
Query: 142 MYDPTIHNITVLRLEKRLDDDLLYLR 167
++ P+I I V+ + L YLR
Sbjct: 75 LHSPSIEAIEVVTRGQVRRAKLYYLR 100
>sp|B1XVN0|RL19_POLNS 50S ribosomal protein L19 OS=Polynucleobacter necessarius subsp.
necessarius (strain STIR1) GN=rplS PE=3 SV=1
Length = 131
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Query: 68 EKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNK-TRKFVGICIQKRYCGLRHEFV 126
EK+E+ ++ + + +PSF G + V+ K T+ F G+ I KR GL F+
Sbjct: 5 EKIEQEEVARLSANKVLPSFAPGDTVVVSVNVVEGTRKRTQAFEGVVIAKRNRGLNSSFI 64
Query: 127 LRNVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRD 168
+R + G+E + Y P I ++ V R L YLRD
Sbjct: 65 VRKISSGEGVERTFQTYSPLIASVEVKRRGDVRRAKLYYLRD 106
>sp|B2A2P3|RL19_NATTJ 50S ribosomal protein L19 OS=Natranaerobius thermophilus (strain
ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=rplS PE=3
SV=1
Length = 113
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 83 DIPSFFVG-SILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 141
DIP F G S+ + + + F GI I+K+ GLR F +R +G+E +
Sbjct: 15 DIPDFKTGDSVRVYVKVVEGQRERQQPFEGIVIRKKGSGLRETFTVRRTSFGVGVERTFP 74
Query: 142 MYDPTIHNITVLRLEKRLDDDLLYLRD 168
++ P + I VLR K L YLRD
Sbjct: 75 VHSPKLGKIEVLRRGKTRRAKLYYLRD 101
>sp|Q5H9Z6|RL19_EHRRW 50S ribosomal protein L19 OS=Ehrlichia ruminantium (strain
Welgevonden) GN=rplS PE=3 SV=1
Length = 125
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 83 DIPSFFVGSILSVTSADKHDPN-KTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 141
+IP F G L VT + + F G+CI++R GL F LR + N I++
Sbjct: 20 EIPKFKSGDTLRVTMKIFDSAGERIQTFEGVCIKRRNNGLHSSFTLRKISYNESIQLQVF 79
Query: 142 MYDPTIHNITVLRLEKRLDDDLLYL 166
+Y PTI +I V++ K L Y+
Sbjct: 80 LYSPTIESIEVVKFGKVRRAKLYYM 104
>sp|A9KLM0|RL19_CLOPH 50S ribosomal protein L19 OS=Clostridium phytofermentans (strain
ATCC 700394 / DSM 18823 / ISDg) GN=rplS PE=3 SV=1
Length = 115
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 83 DIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 141
++ F VG + V + K + +T+ F G+ ++++ G R F +R + +G+E +
Sbjct: 16 EVSKFHVGDTVKVYAKVKEGNRERTQVFEGVVLKRQNGGARETFTVRKQSNGVGVEKTWP 75
Query: 142 MYDPTIHNITVLRLEKRLDDDLLYLRDALPQYS 174
++ P + + V+RL K L YLRD + + +
Sbjct: 76 VHSPIVEKVEVVRLGKVRRAKLTYLRDRVGKKA 108
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,467,048
Number of Sequences: 539616
Number of extensions: 5184698
Number of successful extensions: 16826
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 138
Number of HSP's that attempted gapping in prelim test: 16141
Number of HSP's gapped (non-prelim): 815
length of query: 291
length of database: 191,569,459
effective HSP length: 116
effective length of query: 175
effective length of database: 128,974,003
effective search space: 22570450525
effective search space used: 22570450525
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)