Query psy12656
Match_columns 291
No_of_seqs 190 out of 1010
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 16:10:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12656.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12656hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r8s_P 50S ribosomal protein L 100.0 8.2E-45 2.8E-49 299.6 8.4 111 65-180 2-113 (114)
2 2zjr_M 50S ribosomal protein L 100.0 3.8E-44 1.3E-48 311.3 7.9 115 65-180 6-121 (166)
3 2ftc_K 39S ribosomal protein L 100.0 2E-43 6.9E-48 284.7 11.2 98 84-181 1-98 (98)
4 3v2d_T 50S ribosomal protein L 100.0 2E-43 6.9E-48 301.3 10.1 114 63-181 3-119 (146)
5 3bbo_R Ribosomal protein L19; 100.0 7.6E-41 2.6E-45 302.2 -7.4 114 64-177 120-233 (233)
6 2rm4_A CG6311-PB, DM EDC3; enh 79.4 6.3 0.00022 31.8 7.1 60 87-157 9-74 (103)
7 4he6_A Peptidase family U32; u 78.1 1.8 6E-05 32.7 3.4 56 104-172 3-59 (89)
8 2vc8_A Enhancer of mRNA-decapp 74.5 7 0.00024 30.6 5.9 60 87-156 6-70 (84)
9 4a53_A EDC3; RNA binding prote 63.0 11 0.00037 31.5 5.1 53 89-156 11-65 (125)
10 3p8d_A Medulloblastoma antigen 59.7 28 0.00094 25.9 6.4 46 84-141 4-49 (67)
11 1nz9_A Transcription antitermi 51.8 22 0.00077 24.5 4.6 28 86-119 4-31 (58)
12 1y96_A Gemin6, SIP2, GEM-assoc 46.7 99 0.0034 23.9 8.0 61 88-157 15-75 (86)
13 4fm4_B NitrIle hydratase beta 41.9 22 0.00077 31.4 4.0 34 85-118 117-154 (206)
14 2e6z_A Transcription elongatio 41.6 18 0.00063 25.6 2.8 29 84-118 5-33 (59)
15 3m4w_A Sigma-E factor regulato 40.9 48 0.0017 30.3 6.2 50 105-157 16-65 (295)
16 1bkb_A Translation initiation 40.7 95 0.0032 25.2 7.4 57 84-151 11-77 (136)
17 3p8b_B Transcription antitermi 40.3 33 0.0011 27.9 4.5 48 84-139 89-138 (152)
18 3qii_A PHD finger protein 20; 38.7 86 0.0029 24.3 6.4 46 84-141 19-64 (85)
19 2zzd_A Thiocyanate hydrolase s 33.7 38 0.0013 28.1 3.9 37 82-118 32-72 (126)
20 1zq1_A Glutamyl-tRNA(Gln) amid 30.4 73 0.0025 31.0 5.9 64 86-159 11-76 (438)
21 2eif_A IF-5A, protein (eukaryo 29.5 60 0.002 26.5 4.4 50 83-143 12-67 (136)
22 1ugp_B NitrIle hydratase beta 28.8 46 0.0016 29.9 3.9 37 82-118 134-174 (226)
23 3qyh_B CO-type nitrIle hydrata 28.0 48 0.0017 29.6 3.8 37 82-118 126-166 (219)
24 2ldm_A Uncharacterized protein 33.9 13 0.00043 28.7 0.0 71 86-168 6-78 (81)
25 1vq8_K 50S ribosomal protein L 27.5 1.2E+02 0.0043 25.1 6.0 36 82-117 42-77 (132)
26 1jb7_A Telomere-binding protei 27.2 33 0.0011 33.8 2.9 41 82-128 108-149 (495)
27 3hht_B NitrIle hydratase beta 27.0 52 0.0018 29.6 3.9 36 83-118 138-177 (229)
28 1use_A VAsp, vasodilator-stimu 26.5 37 0.0013 23.7 2.2 15 257-271 13-27 (45)
29 3d6x_A (3R)-hydroxymyristoyl-[ 25.9 43 0.0015 26.2 2.8 29 86-114 100-128 (146)
30 3cnr_A Type IV fimbriae assemb 24.5 1.4E+02 0.0046 23.9 5.6 46 86-137 41-86 (117)
31 1u1z_A (3R)-hydroxymyristoyl-[ 23.8 93 0.0032 25.4 4.6 28 87-114 121-148 (168)
32 2gll_A FABZ, (3R)-hydroxymyris 23.5 58 0.002 26.9 3.3 29 86-114 124-152 (171)
33 4h4g_A (3R)-hydroxymyristoyl-[ 23.2 45 0.0016 27.5 2.6 29 86-114 110-138 (160)
34 4b3f_X DNA-binding protein smu 22.2 93 0.0032 30.6 5.0 34 83-119 75-110 (646)
35 2kbn_A Conserved protein; nucl 22.1 50 0.0017 25.6 2.5 25 83-107 57-82 (109)
36 2jvv_A Transcription antitermi 21.8 96 0.0033 25.7 4.4 29 86-120 127-155 (181)
37 3u5e_S L18A, 60S ribosomal pro 21.8 30 0.001 30.2 1.2 81 87-169 53-146 (172)
38 3u5e_V L17A, YL32, 60S ribosom 21.8 1.3E+02 0.0045 25.1 5.1 34 84-117 49-82 (137)
39 4a18_X RPL18A, 60S ribosomal p 21.0 27 0.00093 30.9 0.8 81 88-169 68-159 (189)
40 3r8s_K 50S ribosomal protein L 20.7 1.8E+02 0.0061 23.8 5.6 32 86-117 32-66 (122)
41 2eqk_A Tudor domain-containing 20.7 2.6E+02 0.0089 21.6 6.2 48 86-143 21-68 (85)
42 3hks_A EIF-5A-2, eukaryotic tr 20.4 2.7E+02 0.0094 23.7 7.0 60 86-156 33-94 (167)
43 2bm3_A Type 2 cohesin, scaffol 20.1 1.4E+02 0.0047 25.9 5.0 31 83-117 14-44 (166)
No 1
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=100.00 E-value=8.2e-45 Score=299.57 Aligned_cols=111 Identities=24% Similarity=0.408 Sum_probs=107.7
Q ss_pred HHHHHHHHHHhhhhccCCCCCCcCCCCEEEEEeeecC-CCCccccEEEEEEEEecCCcceeEEEEeeeCceeEEEEEeec
Q psy12656 65 QVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMY 143 (291)
Q Consensus 65 ~Li~~LE~e~m~~rr~~~diPeF~vGDiV~Vt~~i~e-~K~R~q~F~GivIarr~~Gl~sTFtLRnvi~gvGVEr~FpLy 143 (291)
+||+.+|++||. .|+|+|++||||+|++.+.| +++|+|.|+|+||+++|+|+++||||||+++|+|||++||||
T Consensus 2 ~~i~~~e~~~~~-----~~iP~f~~GDtv~V~~~i~EG~keRiQ~F~GvvI~~~~~G~~~tftvRki~~gvGVEr~fpl~ 76 (114)
T 3r8s_P 2 NIIKQLEQEQMK-----QDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTH 76 (114)
T ss_dssp CHHHHHHGGGCC-----SCCCCCCTTCEEEEEEEEEETTEEEEEEEEEEEEEEECCGGGCEEEEEEEETTEEEEEEEETT
T ss_pred hHHHHHHHHHhc-----cCCCccCCCCEEEEEEEEecCCceeeeeEEEEEEEEECCCCCeEEEEEEecCCccEEEEEecC
Confidence 578999999996 69999999999999999999 999999999999999999999999999999999999999999
Q ss_pred CCccceEEEeeecccccccccccccCCCCcccccCCC
Q psy12656 144 DPTIHNITVLRLEKRLDDDLLYLRDALPQYSTFPFDM 180 (291)
Q Consensus 144 SP~I~kIeVlr~gKvRRAKLYYLRd~~gK~srik~~m 180 (291)
||.|++|||+++||+||||||||||+.||+|+|++..
T Consensus 77 SP~I~~IeV~r~gkvRRAKLyYLR~~~GKaarike~~ 113 (114)
T 3r8s_P 77 SPVVDSISVKRRGAVRKAKLYYLRERTGKAARIKERL 113 (114)
T ss_dssp CTTEEEEEEEECEECCSSCCGGGTTCCHHHHCCEECC
T ss_pred CCccceEEEEEccccchhheeeecCCcchHHhhhhhh
Confidence 9999999999999999999999999999999999864
No 2
>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q
Probab=100.00 E-value=3.8e-44 Score=311.29 Aligned_cols=115 Identities=18% Similarity=0.330 Sum_probs=99.3
Q ss_pred HHHHHHHHHHhhhhccCCCCCCcCCCCEEEEEeeecC-CCCccccEEEEEEEEecCCcceeEEEEeeeCceeEEEEEeec
Q psy12656 65 QVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMY 143 (291)
Q Consensus 65 ~Li~~LE~e~m~~rr~~~diPeF~vGDiV~Vt~~i~e-~K~R~q~F~GivIarr~~Gl~sTFtLRnvi~gvGVEr~FpLy 143 (291)
+||+.||+++|+++ ...++|+|++||||+|++.+.| +++|+|.|+||||+++|+|+++||||||+++|+|||++||||
T Consensus 6 ~li~~le~eqlk~l-~~~diP~Fr~GDtV~V~vkI~EG~KeRiQ~FeGVVIarr~~Gl~sTFTVRkis~GvGVER~Fplh 84 (166)
T 2zjr_M 6 KINRGELLRGIEQD-HTRQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGEGVERVFPFA 84 (166)
T ss_dssp CCCHHHHHHHTTGG-GCCCCCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGGGCEEEEEEEETTEEEEEEEETT
T ss_pred HHHHHHHHHHHhhc-cccCCCCcCCCCEEEEEEEEecCCeeeecceEEEEEEEeCCCCCcEEEEEEecCCeeEEEEEecC
Confidence 58999999999754 4579999999999999999999 999999999999999999999999999999999999999999
Q ss_pred CCccceEEEeeecccccccccccccCCCCcccccCCC
Q psy12656 144 DPTIHNITVLRLEKRLDDDLLYLRDALPQYSTFPFDM 180 (291)
Q Consensus 144 SP~I~kIeVlr~gKvRRAKLYYLRd~~gK~srik~~m 180 (291)
||.|++|||+++|||||||||||||+.||+++|++..
T Consensus 85 SP~I~kIEVvrrGKVRRAKLYYLRd~~GKaARIke~~ 121 (166)
T 2zjr_M 85 SPLVNQVTIVERGKVRRAKLYYLRELRGKAARIKSDR 121 (166)
T ss_dssp CTTEEEEEEEECCCCSSSCCGGGCC------------
T ss_pred CCccceEEEEeccccchhheeeccCCCCchhheehhh
Confidence 9999999999999999999999999999999999974
No 3
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=100.00 E-value=2e-43 Score=284.73 Aligned_cols=98 Identities=55% Similarity=1.009 Sum_probs=96.8
Q ss_pred CCCcCCCCEEEEEeeecCCCCccccEEEEEEEEecCCcceeEEEEeeeCceeEEEEEeecCCccceEEEeeecccccccc
Q psy12656 84 IPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDL 163 (291)
Q Consensus 84 iPeF~vGDiV~Vt~~i~e~K~R~q~F~GivIarr~~Gl~sTFtLRnvi~gvGVEr~FpLySP~I~kIeVlr~gKvRRAKL 163 (291)
+|+|++||||+|++.+.++++|+|.|+|+||+++|+|+++||||||+++|+|||++||||||.|++|||+++||+|||||
T Consensus 1 iP~f~~GDtv~V~~~i~g~k~R~q~F~GvvI~~~~~G~~~tftvRki~~gvGVEr~fpl~SP~I~~IeV~r~gkvRRaKL 80 (98)
T 2ftc_K 1 IPEFYVGSILRVTTADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFELYNPRVQEIQVVKLEKRLDDSL 80 (98)
T ss_pred CCccCCCCEEEEEEEECCCceEeeeEEEEEEEEECCCCCcEEEEEEeccCceEEEEEecCCCceeEEEEEEcCcccceeE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCcccccCCCC
Q psy12656 164 LYLRDALPQYSTFPFDME 181 (291)
Q Consensus 164 YYLRd~~gK~srik~~m~ 181 (291)
|||||+++++|+|+++|+
T Consensus 81 yYLR~~~~~~st~~~~~~ 98 (98)
T 2ftc_K 81 LYLRDALPEYSTFDVNMK 98 (98)
T ss_pred EEeccCCcccceeccccC
Confidence 999999999999999996
No 4
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=100.00 E-value=2e-43 Score=301.34 Aligned_cols=114 Identities=22% Similarity=0.391 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCCcCCCCEEEEEeeecC-CCCccccEEEEEEEEecCCcceeEEEEeeeCceeEEEEEe
Q psy12656 63 RNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 141 (291)
Q Consensus 63 ~~~Li~~LE~e~m~~rr~~~diPeF~vGDiV~Vt~~i~e-~K~R~q~F~GivIarr~~Gl~sTFtLRnvi~gvGVEr~Fp 141 (291)
|++||+.+|.+++. .|+|+|+|||||+|++.+.| +++|+|.|+||||+++|+|+++||||||+++|+|||++||
T Consensus 3 ~~~li~~ie~~~~~-----~diP~F~~GDtV~V~~~i~EG~keRiQ~FeGvVI~rr~~Gl~~tFtVRkis~gvGVEr~Fp 77 (146)
T 3v2d_T 3 RGALIKLVESRYVR-----TDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVERIFP 77 (146)
T ss_dssp HHHHHHHHHHTTCC-----CCCCCCCTTCEEEEEEEEECSSCEEEEEEEEEEEEEECCGGGCEEEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHHHHHhh-----ccCCCcCCCCEEEEEEEEccCCceeeeeEEEEEEEEECCCCCeEEEEEEecCCccEEEEEe
Confidence 57899999999986 69999999999999999999 9999999999999999999999999999999999999999
Q ss_pred ecCCccceEEEeeecccccccccccccCCCCccc--ccCCCC
Q psy12656 142 MYDPTIHNITVLRLEKRLDDDLLYLRDALPQYST--FPFDME 181 (291)
Q Consensus 142 LySP~I~kIeVlr~gKvRRAKLYYLRd~~gK~sr--ik~~m~ 181 (291)
||||.|++|||+++|||||||||||||+.||+++ |++..+
T Consensus 78 l~SP~I~~IeVvrrgkVRRAKLYYLR~~~GKaar~~ike~~~ 119 (146)
T 3v2d_T 78 LHSPLIQKIDIVQRGRARRAKLYFIRNLSDREIRRKLRADRK 119 (146)
T ss_dssp TTCTTEEEEEEEECEECSSSCCGGGGGCCHHHHHHHSEECHH
T ss_pred cCCCccceEEEEecCccchhheeeccCCcchhHHHHHHHHHH
Confidence 9999999999999999999999999999999999 998653
No 5
>3bbo_R Ribosomal protein L19; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=7.6e-41 Score=302.22 Aligned_cols=114 Identities=25% Similarity=0.510 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCcCCCCEEEEEeeecCCCCccccEEEEEEEEecCCcceeEEEEeeeCceeEEEEEeec
Q psy12656 64 NQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMY 143 (291)
Q Consensus 64 ~~Li~~LE~e~m~~rr~~~diPeF~vGDiV~Vt~~i~e~K~R~q~F~GivIarr~~Gl~sTFtLRnvi~gvGVEr~FpLy 143 (291)
..+|+.|+++++.+....+++|+|++||||+|++.+.|+|+|+|.|+||||+++|+|+++||||||+++|+|||++|+||
T Consensus 120 ~~iM~~L~re~ie~~q~kkdiPeFr~GDtV~V~vkI~E~KeRiQ~FeGVVIarr~~Gl~sTFTVRkis~GvGVER~FpLh 199 (233)
T 3bbo_R 120 GDIMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTTIRIRRIIAGVGVEIVFPLY 199 (233)
T ss_dssp -CCSSSCSTTHHHHTTCCSCCSSSCCCSCCCCCCCBCCCSSCCSCCBCCCCCSCBCCCSSSCBCBCCCCCSTTTCCCCCB
T ss_pred HHHHHHHHHHHHHHHhhccCCCccCCCCEEEEEEEeccCcceecceEEEEEEEeCCCCCceEEEEEecCCceEEEEEecC
Confidence 35676666666665555579999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccceEEEeeecccccccccccccCCCCccccc
Q psy12656 144 DPTIHNITVLRLEKRLDDDLLYLRDALPQYSTFP 177 (291)
Q Consensus 144 SP~I~kIeVlr~gKvRRAKLYYLRd~~gK~srik 177 (291)
||.|++|||+++|||||||||||||+.+++|||+
T Consensus 200 SP~I~kIEVvRrgKVRRAKLYYLRd~lp~~STf~ 233 (233)
T 3bbo_R 200 SPNIKEIKVVSHRKVRKARLYYLRDKLPRLSTFK 233 (233)
T ss_dssp SSSSSCCCCCCCSCCCCSCSSCCCCSSTTCSSCC
T ss_pred CCccceEEEEeccccchhhhhhhhcCCcccccCC
Confidence 9999999999999999999999999999999986
No 6
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=79.40 E-value=6.3 Score=31.81 Aligned_cols=60 Identities=18% Similarity=0.320 Sum_probs=45.3
Q ss_pred cCCCCEEEEEeeecCCCCccccEEEEEEEEecCCcceeEEEEeee-Cce-----eEEEEEeecCCccceEEEeeecc
Q psy12656 87 FFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVV-DNL-----GIEIAYDMYDPTIHNITVLRLEK 157 (291)
Q Consensus 87 F~vGDiV~Vt~~i~e~K~R~q~F~GivIarr~~Gl~sTFtLRnvi-~gv-----GVEr~FpLySP~I~kIeVlr~gK 157 (291)
=..|+.|.|+-.+. +-.|+|.|+++.. ++++|++.+ +|+ -+|.+|.--. |.+++++...+
T Consensus 9 dwiG~~VSI~C~d~-----LGVyQG~I~~V~~----~~ItL~kaFrNGiplk~~~~EVtLsa~D--I~~L~IIe~~~ 74 (103)
T 2rm4_A 9 DWIGCAVSIACDEV-----LGVFQGLIKQISA----EEITIVRAFRNGVPLRKQNAEVVLKCTD--IRSIDLIEPAK 74 (103)
T ss_dssp GGTTCEEEEEECTT-----TCEEEEEEEEEET----TEEEEEEEEETTEECSCSSSCEEEETTT--EEEEEEEECCC
T ss_pred ceeceEEEEeeCCc-----ceEeeEEEEEccc----ceeEEhhhhhcCcCcCCCCceEEEEecc--hhheeeecccc
Confidence 45799999998655 6799999999983 669998876 343 3588876544 88888875544
No 7
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=78.08 E-value=1.8 Score=32.70 Aligned_cols=56 Identities=21% Similarity=0.169 Sum_probs=38.3
Q ss_pred CccccEEEEEEEEecCCcceeEEEEeee-CceeEEEEEeecCCccceEEEeeecccccccccccccCCCC
Q psy12656 104 NKTRKFVGICIQKRYCGLRHEFVLRNVV-DNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRDALPQ 172 (291)
Q Consensus 104 ~R~q~F~GivIarr~~Gl~sTFtLRnvi-~gvGVEr~FpLySP~I~kIeVlr~gKvRRAKLYYLRd~~gK 172 (291)
.|.+.|.|+|.+....+-..++.+||-+ -|-+||.. +|-...+.+ .+..|.|..|+
T Consensus 3 ~~~~~fvG~V~~~~~~~g~~~ie~rN~f~~GD~iEi~----~P~g~~~~~---------~v~~m~d~~G~ 59 (89)
T 4he6_A 3 KTTREFAGLVLGYDPETGIATVQQRNHFRPGDEVEFF----GPEIENFTQ---------VIEKIWDEDGN 59 (89)
T ss_dssp CSGGGCSEEEEEEETTTTEEEEEESSCBCTTCEEEEE----STTSCCEEE---------ECCCEEETTSC
T ss_pred ccccEEEEEEEEEeCCCCEEEEEEcCCcCCCCEEEEE----cCCCCcEEE---------EeHHeEcCCCC
Confidence 4678999999997655335789999986 47888854 565444432 34556666664
No 8
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=74.51 E-value=7 Score=30.61 Aligned_cols=60 Identities=18% Similarity=0.364 Sum_probs=43.6
Q ss_pred cCCCCEEEEEeeecCCCCccccEEEEEEEEecCCcceeEEEEeeeCceeE-----EEEEeecCCccceEEEeeec
Q psy12656 87 FFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGI-----EIAYDMYDPTIHNITVLRLE 156 (291)
Q Consensus 87 F~vGDiV~Vt~~i~e~K~R~q~F~GivIarr~~Gl~sTFtLRnvi~gvGV-----Er~FpLySP~I~kIeVlr~g 156 (291)
=..|++|.++..+. +-.|+|++..+.. .+.|+||+|++ .-|+ |.+|. .--|++++|++-.
T Consensus 6 ~~iGs~VSi~c~d~-----lGvYQG~i~~vd~--~~~tItL~~~f-~NG~~~~s~eVtls--~~DI~~L~ii~~~ 70 (84)
T 2vc8_A 6 DWLGSIVSINCGDS-----LGVYQGRVSAVDQ--VSQTISLTRPF-HNGVKCLVPEVTFR--AGDITELKILEIP 70 (84)
T ss_dssp TTTTCEEEEECCTT-----TCEEEEEEEEEET--TTTEEEEEEEE-ETTEECSSSEEEEE--GGGCSEEEEEECC
T ss_pred cccCCEEEEEECCC-----ceEEEEEEEEecc--CCCeEEEehhh-hCCCCCCCcEEEEE--ecChhheEEEecC
Confidence 46899999988655 6699999999875 45789999996 4454 43333 2347888887653
No 9
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=62.98 E-value=11 Score=31.51 Aligned_cols=53 Identities=19% Similarity=0.219 Sum_probs=43.4
Q ss_pred CCCEEEEEeeecCCCCccccEEEEEEEEecCCcceeEEE--EeeeCceeEEEEEeecCCccceEEEeeec
Q psy12656 89 VGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVL--RNVVDNLGIEIAYDMYDPTIHNITVLRLE 156 (291)
Q Consensus 89 vGDiV~Vt~~i~e~K~R~q~F~GivIarr~~Gl~sTFtL--Rnvi~gvGVEr~FpLySP~I~kIeVlr~g 156 (291)
.|..|.|++.+. ..++|+|....+.+ +|| +++..... .+-++-|..++|+...
T Consensus 11 lGy~V~v~LkDg------s~~qG~I~~vd~k~----LtL~~~~a~~s~~-----~I~asdI~DLkVl~~~ 65 (125)
T 4a53_A 11 YGSNVEVLLNND------SKARGVITNFDSSN----SILQLRLANDSTK-----SIVTKDIKDLRILPKN 65 (125)
T ss_dssp TTCEEEEEETTS------CEEEEEEEEEETTT----TEEEEEETTTEEE-----EEEGGGEEEEEECCSC
T ss_pred cCceEEEEECCC------CEeeEEEEeecCCe----eEEeccccccccc-----eeecccccceeeeecc
Confidence 599999999976 38999999997544 456 99966655 8889999999999764
No 10
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=59.68 E-value=28 Score=25.90 Aligned_cols=46 Identities=11% Similarity=0.132 Sum_probs=34.9
Q ss_pred CCCcCCCCEEEEEeeecCCCCccccEEEEEEEEecCCcceeEEEEeeeCceeEEEEEe
Q psy12656 84 IPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 141 (291)
Q Consensus 84 iPeF~vGDiV~Vt~~i~e~K~R~q~F~GivIarr~~Gl~sTFtLRnvi~gvGVEr~Fp 141 (291)
.|.|.+||.|.-.+.+. +.|.|.|.++.+.| +++|.- .+ |+..+..
T Consensus 4 ~~~~~vGd~vmArW~D~------~yYpA~I~si~~~~---~Y~V~F--~d-G~~etvk 49 (67)
T 3p8d_A 4 SSEFQINEQVLACWSDC------RFYPAKVTAVNKDG---TYTVKF--YD-GVVQTVK 49 (67)
T ss_dssp -CCCCTTCEEEEECTTS------CEEEEEEEEECTTS---EEEEEE--TT-SCEEEEE
T ss_pred CcccccCCEEEEEcCCC------CEeeEEEEEECCCC---eEEEEE--eC-CceEEEe
Confidence 57899999999998544 69999999999874 488843 45 7665543
No 11
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=51.84 E-value=22 Score=24.54 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=22.6
Q ss_pred CcCCCCEEEEEeeecCCCCccccEEEEEEEEecC
Q psy12656 86 SFFVGSILSVTSADKHDPNKTRKFVGICIQKRYC 119 (291)
Q Consensus 86 eF~vGDiV~Vt~~i~e~K~R~q~F~GivIarr~~ 119 (291)
.|.+||.|+|+- +-..-|+|.|......
T Consensus 4 ~~~~Gd~V~V~~------Gpf~g~~g~v~~v~~~ 31 (58)
T 1nz9_A 4 AFREGDQVRVVS------GPFADFTGTVTEINPE 31 (58)
T ss_dssp SCCTTCEEEECS------GGGTTCEEEEEEEETT
T ss_pred ccCCCCEEEEee------cCCCCcEEEEEEEcCC
Confidence 589999999964 4467899999998753
No 12
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=46.70 E-value=99 Score=23.93 Aligned_cols=61 Identities=11% Similarity=0.278 Sum_probs=47.8
Q ss_pred CCCCEEEEEeeecCCCCccccEEEEEEEEecCCcceeEEEEeeeCceeEEEEEeecCCccceEEEeeecc
Q psy12656 88 FVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMYDPTIHNITVLRLEK 157 (291)
Q Consensus 88 ~vGDiV~Vt~~i~e~K~R~q~F~GivIarr~~Gl~sTFtLRnvi~gvGVEr~FpLySP~I~kIeVlr~gK 157 (291)
.+|=.|.|+..++ +.|.|++.+..-.. -++.|-|...+...= ..-+....|++|+|+...-
T Consensus 15 li~KeV~V~l~dg------~~y~G~l~tvDp~s--~sIvL~n~~~~~~~~-~~iI~G~aI~eI~v~~~~~ 75 (86)
T 1y96_A 15 YIYKEVRVTASEK------NEYKGWVLTTDPVS--ANIVLVNFLEDGSMS-VTGIMGHAVQTVETMNEGD 75 (86)
T ss_dssp TTTCEEEEEETTT------EEEEEEEEEECTTT--CCEEEEEECTTSCEE-EEEECGGGEEEEEEEECCC
T ss_pred hcCCEEEEEEcCC------CEEEEEEEEECCCc--eEEEEeecccCCeEE-EEEEecceEEEEEEecchh
Confidence 4688899999887 59999999998654 568888886666664 3446778999999998753
No 13
>4fm4_B NitrIle hydratase beta subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=41.95 E-value=22 Score=31.43 Aligned_cols=34 Identities=12% Similarity=0.175 Sum_probs=26.5
Q ss_pred CCcCCCCEEEEEeeecCCCCccccE----EEEEEEEec
Q psy12656 85 PSFFVGSILSVTSADKHDPNKTRKF----VGICIQKRY 118 (291)
Q Consensus 85 PeF~vGDiV~Vt~~i~e~K~R~q~F----~GivIarr~ 118 (291)
|.|.+||.|+|.-..+..-.|...| +|+|+..+|
T Consensus 117 ~~F~vGd~Vrv~~~~~~gHtRlP~Y~rg~~G~I~~~~g 154 (206)
T 4fm4_B 117 GGFKLGQRVHVKNEFVPGHTRFPAYIRGKAGVVVGISP 154 (206)
T ss_dssp TCCCTTCEEEECCCCCSSCCSSCGGGTTCEEEEEEECC
T ss_pred CCCcCCCEEEeCCCCCCCcccccHhhcCCeeEEEEEec
Confidence 5699999999986655566666655 799998875
No 14
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.61 E-value=18 Score=25.57 Aligned_cols=29 Identities=14% Similarity=0.124 Sum_probs=23.4
Q ss_pred CCCcCCCCEEEEEeeecCCCCccccEEEEEEEEec
Q psy12656 84 IPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRY 118 (291)
Q Consensus 84 iPeF~vGDiV~Vt~~i~e~K~R~q~F~GivIarr~ 118 (291)
-..|.+||.|+|.- +=..-|.|+|....+
T Consensus 5 ~~~f~~GD~V~V~~------Gpf~g~~G~V~evd~ 33 (59)
T 2e6z_A 5 SSGFQPGDNVEVCE------GELINLQGKILSVDG 33 (59)
T ss_dssp CSSCCTTSEEEECS------STTTTCEEEECCCBT
T ss_pred cccCCCCCEEEEee------cCCCCCEEEEEEEeC
Confidence 34699999999964 346789999999886
No 15
>3m4w_A Sigma-E factor regulatory protein RSEB; RSEA, RSEB, RSEP, stress response, sigma factor, periplasm, membrane, transmembrane; 2.30A {Escherichia coli} PDB: 2p4b_A 2v43_A 2v42_A
Probab=40.93 E-value=48 Score=30.32 Aligned_cols=50 Identities=14% Similarity=0.078 Sum_probs=39.9
Q ss_pred ccccEEEEEEEEecCCcceeEEEEeeeCceeEEEEEeecCCccceEEEeeecc
Q psy12656 105 KTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMYDPTIHNITVLRLEK 157 (291)
Q Consensus 105 R~q~F~GivIarr~~Gl~sTFtLRnvi~gvGVEr~FpLySP~I~kIeVlr~gK 157 (291)
+.+.|+|+.|..++.++.+.=...-+.+|.-.|+.-.|..|. -||+|++.
T Consensus 16 ~~lnY~g~fV~~~~~~i~s~ri~H~~~~~~~~e~L~~LdG~~---reviR~~~ 65 (295)
T 3m4w_A 16 QSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPR---REVVQRGN 65 (295)
T ss_dssp HHSEEEEEEEEEETTEEEEEEEEEEECSSSEEEEEEECSSSC---CEEEEETT
T ss_pred hhCCeEEEEEEEeCCeEEEEEEEEEeeCCEEEEEEEEcCCCc---EEEEEECC
Confidence 467999999999988876655555667777899999999987 47887764
No 16
>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5
Probab=40.70 E-value=95 Score=25.23 Aligned_cols=57 Identities=14% Similarity=0.094 Sum_probs=35.0
Q ss_pred CCCcCCCCEEEEEeeecCCCCccccEEEEEEEE----ecCC--cceeEEEEeeeCceeEEEEEee----cCCccceEE
Q psy12656 84 IPSFFVGSILSVTSADKHDPNKTRKFVGICIQK----RYCG--LRHEFVLRNVVDNLGIEIAYDM----YDPTIHNIT 151 (291)
Q Consensus 84 iPeF~vGDiV~Vt~~i~e~K~R~q~F~GivIar----r~~G--l~sTFtLRnvi~gvGVEr~FpL----ySP~I~kIe 151 (291)
..+|+.|.+|.+.= + . -.|+.. -|+| --..+.+||+..|.-+|.+|+- ..|.|++.+
T Consensus 11 ~~~lrkG~~i~~~g-------~--p--~~Vve~~~~KpGKgG~A~vr~k~knl~tG~~~e~tf~s~~kve~~~ve~~~ 77 (136)
T 1bkb_A 11 AGELKEGSYVVIDG-------E--P--CRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVDAQVEVPIIEKFT 77 (136)
T ss_dssp GGGCCTTCEEEETT-------E--E--EEEEEEEEECCSTTSCCEEEEEEEETTTCCEEEEEEETTSEEEECCCEEEE
T ss_pred HHHccCCCEEEECC-------E--E--EEEEEEEEecCCCCCceEEEEEEEECCCCCeEEEEEcCCCEeeeceEEEEE
Confidence 34799999986521 1 1 122222 2332 2346779999999999999984 335554443
No 17
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=40.26 E-value=33 Score=27.94 Aligned_cols=48 Identities=8% Similarity=0.084 Sum_probs=32.7
Q ss_pred CCCcCCCCEEEEEeeecCCCCccccEEEEEEEEecCCcceeEEEEeeeCce--eEEEE
Q psy12656 84 IPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNL--GIEIA 139 (291)
Q Consensus 84 iPeF~vGDiV~Vt~~i~e~K~R~q~F~GivIarr~~Gl~sTFtLRnvi~gv--GVEr~ 139 (291)
...|.+||.|+|+- +-..-|.|+|....+..-. .+|.=.+.|. .||.-
T Consensus 89 ~~~~~~Gd~VrI~~------Gpf~g~~g~V~~vd~~k~~--v~V~v~~~gr~tpvel~ 138 (152)
T 3p8b_B 89 VSGLEPGDLVEVIA------GPFKGQKAKVVKIDESKDE--VVVQFIDAIVPIPVTIK 138 (152)
T ss_dssp TTTCCTTCEEEECS------STTTTCEEEEEEEETTTTE--EEEEESSCSSCCEEEEE
T ss_pred cccCCCCCEEEEee------ecCCCCEEEEEEEeCCCCE--EEEEEEecceeEEEEEC
Confidence 35799999999964 4578999999999876543 3443344443 45543
No 18
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=38.69 E-value=86 Score=24.35 Aligned_cols=46 Identities=11% Similarity=0.155 Sum_probs=34.5
Q ss_pred CCCcCCCCEEEEEeeecCCCCccccEEEEEEEEecCCcceeEEEEeeeCceeEEEEEe
Q psy12656 84 IPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 141 (291)
Q Consensus 84 iPeF~vGDiV~Vt~~i~e~K~R~q~F~GivIarr~~Gl~sTFtLRnvi~gvGVEr~Fp 141 (291)
.+.|.+||.|.-.+.+. +.|.|.|.++.+.| +++|+ +.+ |+..+..
T Consensus 19 ~~~f~vGd~VlArW~D~------~yYPAkI~sV~~~~---~YtV~--F~D-G~~etvk 64 (85)
T 3qii_A 19 SSEFQINEQVLACWSDC------RFYPAKVTAVNKDG---TYTVK--FYD-GVVQTVK 64 (85)
T ss_dssp --CCCTTCEEEEECTTS------CEEEEEEEEECTTS---EEEEE--ETT-SCEEEEE
T ss_pred CcccccCCEEEEEeCCC------CEeeEEEEEECCCC---eEEEE--EeC-CCeEEec
Confidence 56899999999999554 68999999999875 58884 345 7665543
No 19
>2zzd_A Thiocyanate hydrolase subunit alpha; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_A 2dxb_A 2dd5_A* 2dxc_A*
Probab=33.72 E-value=38 Score=28.14 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=27.0
Q ss_pred CCCCCcCCCCEEEEEeeecCCCCccccE----EEEEEEEec
Q psy12656 82 IDIPSFFVGSILSVTSADKHDPNKTRKF----VGICIQKRY 118 (291)
Q Consensus 82 ~diPeF~vGDiV~Vt~~i~e~K~R~q~F----~GivIarr~ 118 (291)
-.-|.|.+||.|+|.-.....=.|+..| +|+|....+
T Consensus 32 ~~~prF~vGDrVrvr~~~p~gHtRlP~YvRGk~G~I~~~~G 72 (126)
T 2zzd_A 32 AGKSKFNVGDRVRIKDLPDLFYTRTMTYTRGATGTIVRLVY 72 (126)
T ss_dssp TCSCSSCTTCEEEECCCCCSSCCSSCGGGTTCEEEEEEEEE
T ss_pred CCCCccCCCCEEEEccCCCCCceeccHHhCCCEEEEEEEec
Confidence 3467999999999986555556666655 688877664
No 20
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1
Probab=30.41 E-value=73 Score=31.03 Aligned_cols=64 Identities=22% Similarity=0.330 Sum_probs=39.9
Q ss_pred CcCCCCEEEEEeeecCCCCccccEEEEEEEEecCCcceeEEEEeee--CceeEEEEEeecCCccceEEEeeecccc
Q psy12656 86 SFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVV--DNLGIEIAYDMYDPTIHNITVLRLEKRL 159 (291)
Q Consensus 86 eF~vGDiV~Vt~~i~e~K~R~q~F~GivIarr~~Gl~sTFtLRnvi--~gvGVEr~FpLySP~I~kIeVlr~gKvR 159 (291)
.+.+||.|+|..... +-...|+|++|-....+-+-.++| |.- .++||.+ -.|++|+++..+...
T Consensus 11 ~~~~gd~v~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~-kl~~gyn~g~~~------~~~~~~~~~~~~~~~ 76 (438)
T 1zq1_A 11 NINVGDFVRITKEED---GEEVTYEGYIMPPYELSAGDTLVL-KLENGYNIGIAL------EKIRRIEVLERAKVK 76 (438)
T ss_dssp TCCTTCEEEEEEESS---SSEEECCEEECCCCTTCCCSEEEE-EETTSCEEEEEG------GGEEEEEEEECCCCC
T ss_pred CCCCCCEEEEEECCC---cceeEEEEEEecCcccCCCCeEEE-EccCCceeeech------hhcceEEEeccCCCC
Confidence 477899999988653 123489999996554442333443 444 4566641 236678888876433
No 21
>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A
Probab=29.52 E-value=60 Score=26.54 Aligned_cols=50 Identities=12% Similarity=0.098 Sum_probs=32.3
Q ss_pred CCCCcCCCCEEEEEeeecCCCCccccEEEEEEEEe----cC-C-cceeEEEEeeeCceeEEEEEeec
Q psy12656 83 DIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKR----YC-G-LRHEFVLRNVVDNLGIEIAYDMY 143 (291)
Q Consensus 83 diPeF~vGDiV~Vt~~i~e~K~R~q~F~GivIarr----~~-G-l~sTFtLRnvi~gvGVEr~FpLy 143 (291)
..++|+.|++|.+. . +.+. |+... |+ | --..+.+||+..|.-+|.+|+--
T Consensus 12 ~~~~lr~G~~I~~~---g------~p~~--V~e~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~ 67 (136)
T 2eif_A 12 NVGSLKVGQYVMID---G------VPCE--IVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTS 67 (136)
T ss_dssp EGGGCCTTSEEEET---T------EEEE--EEEEEECCCCSSSCCEEEEEEEESSSCCEEEEEEETT
T ss_pred EHHHCcCCCEEEEC---C------EEEE--EEEEEeecCCCCCceEEEEEEEEcCCCCeEEEEecCC
Confidence 35689999998662 1 1222 33322 22 3 12356799999999999999853
No 22
>1ugp_B NitrIle hydratase beta subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: b.34.4.4 PDB: 1ire_B 1ugq_B 1ugr_B 1ugs_B
Probab=28.81 E-value=46 Score=29.87 Aligned_cols=37 Identities=14% Similarity=0.333 Sum_probs=27.3
Q ss_pred CCCCCcCCCCEEEEEeeecCCCCccccE----EEEEEEEec
Q psy12656 82 IDIPSFFVGSILSVTSADKHDPNKTRKF----VGICIQKRY 118 (291)
Q Consensus 82 ~diPeF~vGDiV~Vt~~i~e~K~R~q~F----~GivIarr~ 118 (291)
-.-|.|.+||.|+|.-..+..-.|+..| +|+|....+
T Consensus 134 ~~~~~F~vGd~Vrv~~~~~~~HtR~P~Y~Rgk~G~I~~~~g 174 (226)
T 1ugp_B 134 DRPPKFKEGDVVRFSTASPKGHARRARYVRGKTGTVVKHHG 174 (226)
T ss_dssp SSCCSCCTTCEEEECCCCCSSCCCCCGGGTTCEEEEEEEEE
T ss_pred CCCCcCCCCCeEEEccCCCCCcccccHHhCCCeEEEEEEec
Confidence 3467899999999986655566666665 688887664
No 23
>3qyh_B CO-type nitrIle hydratase beta subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} SCOP: b.34.4.0 PDB: 3qxe_B 3qz5_B 3qyg_B 3qz9_B
Probab=27.95 E-value=48 Score=29.60 Aligned_cols=37 Identities=16% Similarity=0.236 Sum_probs=27.0
Q ss_pred CCCCCcCCCCEEEEEeeecCCCCccccE----EEEEEEEec
Q psy12656 82 IDIPSFFVGSILSVTSADKHDPNKTRKF----VGICIQKRY 118 (291)
Q Consensus 82 ~diPeF~vGDiV~Vt~~i~e~K~R~q~F----~GivIarr~ 118 (291)
-.-|.|.+||.|+|.-.....-.|+..| +|+|....+
T Consensus 126 ~~~~~F~vGd~Vrv~~~~~~~HtR~P~Y~RG~~G~I~~~~g 166 (219)
T 3qyh_B 126 GARARFAVGDKVRVLNKNPVGHTRMPRYTRGKVGTVVIDHG 166 (219)
T ss_dssp CSCCCCCTTCEEEECCCCCSSCCCSCGGGTTCEEEEEEEEE
T ss_pred CCCCCCCCCCEEEECCCCCCCcccccHHHCCCeeEEEEEec
Confidence 3557999999999976555556666655 688877764
No 24
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=33.89 E-value=13 Score=28.71 Aligned_cols=71 Identities=8% Similarity=0.097 Sum_probs=47.1
Q ss_pred CcCCCCEEEEEeeecCCCCccccEEEEEEEEecCCcceeEEEEeeeCceeEEEEEeecC--CccceEEEeeecccccccc
Q psy12656 86 SFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMYD--PTIHNITVLRLEKRLDDDL 163 (291)
Q Consensus 86 eF~vGDiV~Vt~~i~e~K~R~q~F~GivIarr~~Gl~sTFtLRnvi~gvGVEr~FpLyS--P~I~kIeVlr~gKvRRAKL 163 (291)
.|++||.+.-.+.+. +-|.+.|.++...| +++|.-+ . |-+.+.++.. |+-++=++....|-.||.-
T Consensus 6 ~~kvGd~clAkwsDg------~wY~A~I~~v~~~~---~y~V~F~--D-Gn~E~V~~s~LrPl~~~~~~~~~~~~~~~~~ 73 (81)
T 2ldm_A 6 EFQINEQVLASWSDS------RFYPAKVTAVNKDG---TYTVKFY--D-GVVQTVKHIHVKAFSKDQNIVGNARGSRAHS 73 (81)
Confidence 699999999888755 58899999886544 5777433 3 6666666543 6666655555556666655
Q ss_pred ccccc
Q psy12656 164 LYLRD 168 (291)
Q Consensus 164 YYLRd 168 (291)
..|..
T Consensus 74 ~~~~~ 78 (81)
T 2ldm_A 74 SHLXS 78 (81)
Confidence 44443
No 25
>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ...
Probab=27.46 E-value=1.2e+02 Score=25.11 Aligned_cols=36 Identities=11% Similarity=0.261 Sum_probs=29.3
Q ss_pred CCCCCcCCCCEEEEEeeecCCCCccccEEEEEEEEe
Q psy12656 82 IDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKR 117 (291)
Q Consensus 82 ~diPeF~vGDiV~Vt~~i~e~K~R~q~F~GivIarr 117 (291)
...|.-.+||+|.|+++..-...|-+.+.+||+..+
T Consensus 42 ~r~p~a~iGD~IvvsVKk~~p~~kg~v~~AVIVRtk 77 (132)
T 1vq8_K 42 NRLPKAGLGDKITVSVTKGTPEMRRQVLEAVVVRQR 77 (132)
T ss_dssp TCCCEECTTCEEEEEEEEECTTTTTCEEEEEEEECS
T ss_pred cccCCCccCcEEEEEEEecCCCCCCcEEEEEEEEcC
Confidence 456788999999999987764458899999999854
No 26
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=27.22 E-value=33 Score=33.84 Aligned_cols=41 Identities=22% Similarity=0.227 Sum_probs=31.6
Q ss_pred CCCCCc-CCCCEEEEEeeecCCCCccccEEEEEEEEecCCcceeEEEE
Q psy12656 82 IDIPSF-FVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLR 128 (291)
Q Consensus 82 ~diPeF-~vGDiV~Vt~~i~e~K~R~q~F~GivIarr~~Gl~sTFtLR 128 (291)
.++|.+ .+||||.++=. ++|.|.|-+.+.-+.|.+++|.|=
T Consensus 108 e~LP~V~~~GDII~Lhrv------kIq~~ng~~~~v~~~~~~SswavF 149 (495)
T 1jb7_A 108 EDLPIIHRAGDIIRVHRA------TLRLYNGQRQFNANVFYSSSWALF 149 (495)
T ss_dssp GGSCCCCEETCEEEEEEE------EEEEETTEEEEEEETTTTCEEEEE
T ss_pred HHCCCCCCCCCEEEEEEE------EEEEECCcEEEEecCCCceEEEEE
Confidence 479999 79999999643 356888888877777877888763
No 27
>3hht_B NitrIle hydratase beta subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: b.34.4.4 PDB: 2dpp_B 1v29_B
Probab=26.98 E-value=52 Score=29.62 Aligned_cols=36 Identities=14% Similarity=0.226 Sum_probs=26.6
Q ss_pred CCCCcCCCCEEEEEeeecCCCCccccE----EEEEEEEec
Q psy12656 83 DIPSFFVGSILSVTSADKHDPNKTRKF----VGICIQKRY 118 (291)
Q Consensus 83 diPeF~vGDiV~Vt~~i~e~K~R~q~F----~GivIarr~ 118 (291)
.-|.|.+||.|+|.-.....-.|+..| +|+|....+
T Consensus 138 ~~~~F~vGd~Vrv~~~~~~~HtR~P~Y~RG~~G~I~~~~g 177 (229)
T 3hht_B 138 ASPRFKVGERIKTKNIHPTGHTRFPRYARDKYGVIDEVYG 177 (229)
T ss_dssp SCCSCCTTCEEEECCCCCSSCCSCCGGGTTCEEEEEEEEE
T ss_pred CCCCCCCCCEEEECCCCCCCcccCcHHHCCCeeEEEEEec
Confidence 457899999999976555555666655 688877764
No 28
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=26.54 E-value=37 Score=23.71 Aligned_cols=15 Identities=33% Similarity=0.616 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHhhhh
Q psy12656 257 QEEIFSEVFSELHQL 271 (291)
Q Consensus 257 ~~~i~~e~~~~~~~~ 271 (291)
+++|+.||..+||++
T Consensus 13 KqEIL~E~RkElqK~ 27 (45)
T 1use_A 13 KQELLEEVKKELQKV 27 (45)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 347888998888875
No 29
>3d6x_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; FABZ, hot DOG fold, dehydratase, lipid biosynthesis, lipid synthesis, lyase; HET: MSE; 2.59A {Campylobacter jejuni subsp}
Probab=25.89 E-value=43 Score=26.19 Aligned_cols=29 Identities=14% Similarity=0.105 Sum_probs=20.4
Q ss_pred CcCCCCEEEEEeeecCCCCccccEEEEEE
Q psy12656 86 SFFVGSILSVTSADKHDPNKTRKFVGICI 114 (291)
Q Consensus 86 eF~vGDiV~Vt~~i~e~K~R~q~F~GivI 114 (291)
.++|||+|.+++.+.+.+.++-.|.|.+.
T Consensus 100 pV~pGd~l~~~~~v~~~~~~~~~~~~~~~ 128 (146)
T 3d6x_A 100 PVRPGDRLDYEMSVVKNRGNMWIFKGQAF 128 (146)
T ss_dssp CCCTTCEEEEEEEEEEEETTEEEEEEEEE
T ss_pred ccCCCCEEEEEEEEEEeeCCEEEEEEEEE
Confidence 36889999999888764445556666554
No 30
>3cnr_A Type IV fimbriae assembly protein; PILZ, xanthomonas citri, type IV pilus assembly, unknown function; HET: MSE; 1.90A {Xanthomonas axonopodis PV} PDB: 3dsg_A
Probab=24.54 E-value=1.4e+02 Score=23.90 Aligned_cols=46 Identities=13% Similarity=0.242 Sum_probs=32.1
Q ss_pred CcCCCCEEEEEeeecCCCCccccEEEEEEEEecCCcceeEEEEeeeCceeEE
Q psy12656 86 SFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIE 137 (291)
Q Consensus 86 eF~vGDiV~Vt~~i~e~K~R~q~F~GivIarr~~Gl~sTFtLRnvi~gvGVE 137 (291)
.+.+||.|.+.+...+..++ -.+.|.|+-+...|-.. +.-.|+||+
T Consensus 41 ~~~~G~~V~l~l~Lp~~~~~-i~~~GkVvWi~p~~~~~-----~~p~G~GVq 86 (117)
T 3cnr_A 41 RYMLGDEVFLLLTLPDSSER-LPVAGKVIWTTPAGAQG-----NRAAGIGVQ 86 (117)
T ss_dssp CCCTTCEEEEEEECTTCSCE-EEEEEEEEEEECC-----------CCEEEEE
T ss_pred ccCCCCEEEEEEEcCCCCce-EEEEEEEEEecCCCCCC-----CCCCceEEE
Confidence 58999999999999865444 35679999987665432 335788887
No 31
>1u1z_A (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase; fatty acid biosynthesis, hot DOG fold, lyase; 2.50A {Pseudomonas aeruginosa} SCOP: d.38.1.6
Probab=23.78 E-value=93 Score=25.38 Aligned_cols=28 Identities=14% Similarity=0.036 Sum_probs=18.6
Q ss_pred cCCCCEEEEEeeecCCCCccccEEEEEE
Q psy12656 87 FFVGSILSVTSADKHDPNKTRKFVGICI 114 (291)
Q Consensus 87 F~vGDiV~Vt~~i~e~K~R~q~F~GivI 114 (291)
+.|||+|.+++.+.+.+..+-.|.|.+.
T Consensus 121 V~pGD~L~~~v~v~~~~~g~~~~~~~~~ 148 (168)
T 1u1z_A 121 VLPGDQLQLHAKFISVKRSIWKFDCHAT 148 (168)
T ss_dssp CCTTCEEEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCCCEEEEEEEEEEEeCCEEEEEEEEE
Confidence 5689999998887754344445555443
No 32
>2gll_A FABZ, (3R)-hydroxymyristoyl-acyl carrier protein dehydratase; lyase; 2.20A {Helicobacter pylori} PDB: 2glm_A* 2glp_A* 2glv_A 3dp1_A* 3cf8_A* 3cf9_A* 3d04_A* 3doy_A* 3doz_A* 3dp0_A* 3b7j_A* 3dp2_A* 3dp3_A* 3ed0_A*
Probab=23.47 E-value=58 Score=26.88 Aligned_cols=29 Identities=10% Similarity=-0.032 Sum_probs=21.7
Q ss_pred CcCCCCEEEEEeeecCCCCccccEEEEEE
Q psy12656 86 SFFVGSILSVTSADKHDPNKTRKFVGICI 114 (291)
Q Consensus 86 eF~vGDiV~Vt~~i~e~K~R~q~F~GivI 114 (291)
.++|||+|.+++.+.+.+.++-.|.|.+.
T Consensus 124 pV~PGD~L~i~v~v~~~~~~~~~~~~~~~ 152 (171)
T 2gll_A 124 PVTPGDRLEYHLEVLKHKGMIWQVGGTAQ 152 (171)
T ss_dssp CCCTTCEEEEEEEEEEESSSEEEEEEEEE
T ss_pred ccCCCCEEEEEEEEEEEeCCEEEEEEEEE
Confidence 36799999999888765556667777665
No 33
>4h4g_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Burkholderia thailandensis}
Probab=23.17 E-value=45 Score=27.54 Aligned_cols=29 Identities=14% Similarity=0.020 Sum_probs=21.2
Q ss_pred CcCCCCEEEEEeeecCCCCccccEEEEEE
Q psy12656 86 SFFVGSILSVTSADKHDPNKTRKFVGICI 114 (291)
Q Consensus 86 eF~vGDiV~Vt~~i~e~K~R~q~F~GivI 114 (291)
.+.|||+|.+++.....+..+-.|.|.+-
T Consensus 110 ~V~PGd~L~i~v~~~~~~~~~~~~~~~~~ 138 (160)
T 4h4g_A 110 VVEPGDQLILNVTFERYIRGIWKFKAVAE 138 (160)
T ss_dssp CCCTTCEEEEEEEEEEEETTEEEEEEEEE
T ss_pred ccCCCCEEEEEEEEEEeeCCEEEEEEEEE
Confidence 36899999999887765566666766543
No 34
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=22.22 E-value=93 Score=30.59 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=24.8
Q ss_pred CCC--CcCCCCEEEEEeeecCCCCccccEEEEEEEEecC
Q psy12656 83 DIP--SFFVGSILSVTSADKHDPNKTRKFVGICIQKRYC 119 (291)
Q Consensus 83 diP--eF~vGDiV~Vt~~i~e~K~R~q~F~GivIarr~~ 119 (291)
.+| .|++||+|.|.-... ...+.+.|+|..+...
T Consensus 75 ~l~~~~~~~Gd~v~~~~~~~---~~~~~~~g~v~~~~~~ 110 (646)
T 4b3f_X 75 ALPSNSFTSGDIVGLYDAAN---EGSQLATGILTRVTQK 110 (646)
T ss_dssp CCCCCCCCTTCEEEEEETTT---TSCCCEEEEEEEEETT
T ss_pred CCccCCCCCCCEEEEEecCC---CCCceEEEEEEEEeCC
Confidence 455 699999999864333 3446799999998754
No 35
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=22.09 E-value=50 Score=25.60 Aligned_cols=25 Identities=8% Similarity=0.110 Sum_probs=17.3
Q ss_pred CCCCcCCCCEEEEE-eeecCCCCccc
Q psy12656 83 DIPSFFVGSILSVT-SADKHDPNKTR 107 (291)
Q Consensus 83 diPeF~vGDiV~Vt-~~i~e~K~R~q 107 (291)
+.+.|.+||+|+|. .++.+-+++.|
T Consensus 57 ~~~~~~~G~~V~i~n~~v~~~~G~~~ 82 (109)
T 2kbn_A 57 ELPLLEQGESYLLRSVVVGEYNDRFQ 82 (109)
T ss_dssp CCCCCCTTCEEEEEEEEEEEETTEEE
T ss_pred cccccCCCCEEEEEEEEEEEECCEEE
Confidence 56799999999998 55554334333
No 36
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=21.84 E-value=96 Score=25.72 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=23.6
Q ss_pred CcCCCCEEEEEeeecCCCCccccEEEEEEEEecCC
Q psy12656 86 SFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCG 120 (291)
Q Consensus 86 eF~vGDiV~Vt~~i~e~K~R~q~F~GivIarr~~G 120 (291)
.|.+||.|+|+- +=..-|+|+|..+.+..
T Consensus 127 ~~~~Gd~V~V~~------GPf~g~~G~v~~v~~~k 155 (181)
T 2jvv_A 127 LFEPGEMVRVND------GPFADFNGVVEEVDYEK 155 (181)
T ss_dssp CCCTTEEEEECS------STTTTEEEEEEEEETTT
T ss_pred cCCCCCEEEEec------cCCCCcEEEEEEEeCCC
Confidence 699999999964 45789999999987543
No 37
>3u5e_S L18A, 60S ribosomal protein L20-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_S 4b6a_S
Probab=21.83 E-value=30 Score=30.20 Aligned_cols=81 Identities=16% Similarity=0.288 Sum_probs=56.3
Q ss_pred cCCCCEEEEEeeecC-CCCccccEEEEEEEEe-cCCcceeE-EEEeeeCceeEEEEEe---------ecCCccceEEEe-
Q psy12656 87 FFVGSILSVTSADKH-DPNKTRKFVGICIQKR-YCGLRHEF-VLRNVVDNLGIEIAYD---------MYDPTIHNITVL- 153 (291)
Q Consensus 87 F~vGDiV~Vt~~i~e-~K~R~q~F~GivIarr-~~Gl~sTF-tLRnvi~gvGVEr~Fp---------LySP~I~kIeVl- 153 (291)
=..|.||.+.- +.| +..++..| ||.+.=. ++|..--+ -.|.+...-.||++|. -+|=.|.+|+.|
T Consensus 53 ks~GeIv~~~~-i~Ek~p~~VKNf-GIwlrYdSrsgtHNmYKEyRdlt~~gAV~q~Y~dMgsRHRar~~sIqIikVeeI~ 130 (172)
T 3u5e_S 53 KASGEIVSINQ-INEAHPTKVKNF-GVWVRYDSRSGTHNMYKEIRDVSRVAAVETLYQDMAARHRARFRSIHILKVAEIE 130 (172)
T ss_dssp GGGCCEEEEEE-CCCSSTTSCEEE-EEEEEEECSSCEEEEEEEEEESSHHHHHHHHHHHHHHHHCCCGGGEEEEEEEECC
T ss_pred cccceEEEEEE-EccCCCceeEEe-eEEEEEcccCCccccchhhhhccHHHHHHHHHHHhhhhhcccccceEEeeeEEEc
Confidence 35799999985 445 78999999 9998854 45653333 3788877778998883 355666677777
Q ss_pred eecccccccccccccC
Q psy12656 154 RLEKRLDDDLLYLRDA 169 (291)
Q Consensus 154 r~gKvRRAKLYYLRd~ 169 (291)
..++.+|..+-=+-|.
T Consensus 131 ~~~~~rrp~vkQf~~s 146 (172)
T 3u5e_S 131 KTADVKRQYVKQFLTK 146 (172)
T ss_dssp STTSCCCHHHHGGGST
T ss_pred chhcCCChhhHhhhcC
Confidence 5677877765444443
No 38
>3u5e_V L17A, YL32, 60S ribosomal protein L23-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_M 1s1i_R 3izs_M* 3j16_I 3o5h_U 3o58_U 3u5i_V 4b6a_V 2x7n_C 3jyw_R 2zkr_k 3iz5_M 3izr_M 4a17_J 4a1a_J 4a1c_J 4a1e_J
Probab=21.80 E-value=1.3e+02 Score=25.15 Aligned_cols=34 Identities=12% Similarity=0.284 Sum_probs=27.9
Q ss_pred CCCcCCCCEEEEEeeecCCCCccccEEEEEEEEe
Q psy12656 84 IPSFFVGSILSVTSADKHDPNKTRKFVGICIQKR 117 (291)
Q Consensus 84 iPeF~vGDiV~Vt~~i~e~K~R~q~F~GivIarr 117 (291)
+|.-.+||+|.|+++......|-+.+.+||+..+
T Consensus 49 ~~~A~iGD~IvvsVK~~~p~~k~~V~~AVIVRtk 82 (137)
T 3u5e_V 49 LPAASLGDMVMATVKKGKPELRKKVMPAIVVRQA 82 (137)
T ss_dssp CCEECTTCEEEEECSSBCTTTTTSCEEEEEEECC
T ss_pred cccCCcCCEEEEEEEECCCCCCCcEEEEEEEEec
Confidence 4778999999999987664457899999999854
No 39
>4a18_X RPL18A, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_X 4a1b_X 4a1d_X
Probab=21.00 E-value=27 Score=30.88 Aligned_cols=81 Identities=20% Similarity=0.215 Sum_probs=56.4
Q ss_pred CCCCEEEEEeeecCCCCccccEEEEEEEE-ecCCcceeE-EEEeeeCceeEEEEEe---------ecCCccceEEEeeec
Q psy12656 88 FVGSILSVTSADKHDPNKTRKFVGICIQK-RYCGLRHEF-VLRNVVDNLGIEIAYD---------MYDPTIHNITVLRLE 156 (291)
Q Consensus 88 ~vGDiV~Vt~~i~e~K~R~q~F~GivIar-r~~Gl~sTF-tLRnvi~gvGVEr~Fp---------LySP~I~kIeVlr~g 156 (291)
..|.||.+.----.+..++..| ||.+.= .++|..--+ -.|.+...-.||.+|. -+|=.|.+|+.|..+
T Consensus 68 s~GeIv~~~~i~Ek~p~~VKNf-GIwlrYdSRsgtHNmYKEYRdlt~~gAV~q~Y~dMgsRHRar~~sIqIikVeeI~~~ 146 (189)
T 4a18_X 68 SQGRILSVNEIYEKSLNTVKTY-GIVLKYQSRTAIHNMYKEYRDVSLNGAVSQLIQDMAGNHRAQPDTIQIIRTATLEPK 146 (189)
T ss_dssp TTEEEEEEEEECCSCTTSCEEE-EEEEEEECSSCEEEEEEEEEESCHHHHHHHHHHHHHHTTCCCGGGCEEEEEEECCGG
T ss_pred ccceEEEEEEEccCCCceeEEe-eEEEEEcccCCccccchhhhhccHHHHHHHHHHHhhhhhcccccceEEEEEEEECHH
Confidence 5799999985333378999999 999884 456654333 3788877778998883 356667777777777
Q ss_pred ccccccccccccC
Q psy12656 157 KRLDDDLLYLRDA 169 (291)
Q Consensus 157 KvRRAKLYYLRd~ 169 (291)
+++|..+-=+-|.
T Consensus 147 ~~rrp~vkQf~~s 159 (189)
T 4a18_X 147 DIKRPATLAMRNA 159 (189)
T ss_dssp GCCCHHHHTTCCS
T ss_pred HccCHHHHHHhcc
Confidence 8888766444443
No 40
>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_K 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* ...
Probab=20.72 E-value=1.8e+02 Score=23.82 Aligned_cols=32 Identities=16% Similarity=0.232 Sum_probs=24.5
Q ss_pred CcCCCCEEEEEeeecCCC---CccccEEEEEEEEe
Q psy12656 86 SFFVGSILSVTSADKHDP---NKTRKFVGICIQKR 117 (291)
Q Consensus 86 eF~vGDiV~Vt~~i~e~K---~R~q~F~GivIarr 117 (291)
.-.+||+|.|+++..-.. .+-+.+.+||+..+
T Consensus 32 ~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtk 66 (122)
T 3r8s_K 32 YAGVGDIIKITIKEAIPRGKVKKGDVLKAVVVRTK 66 (122)
T ss_dssp CBCTTCEEEEEEEEECTTSSSCTTCEEEEEEEECS
T ss_pred cccCCCEEEEEEEEcCCCCccccCCEEEEEEEEeC
Confidence 468999999999865533 34589999999844
No 41
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.67 E-value=2.6e+02 Score=21.59 Aligned_cols=48 Identities=17% Similarity=0.151 Sum_probs=38.6
Q ss_pred CcCCCCEEEEEeeecCCCCccccEEEEEEEEecCCcceeEEEEeeeCceeEEEEEeec
Q psy12656 86 SFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMY 143 (291)
Q Consensus 86 eF~vGDiV~Vt~~i~e~K~R~q~F~GivIarr~~Gl~sTFtLRnvi~gvGVEr~FpLy 143 (291)
..++||+|++.+.+.. |-+.|-|+++...|. +.| ..-..|++-+++..
T Consensus 21 ~~k~g~~vaak~~d~n-----~WyRakV~~v~~~~~---veV--l~~DyGn~~~V~~~ 68 (85)
T 2eqk_A 21 KWENDMHCAVKIQDKN-----QWRRGQIIRMVTDTL---VEV--LLYDVGVELVVNVD 68 (85)
T ss_dssp CCCSSCEEEEECSSSC-----CEEEEEEEEECSSSE---EEE--ECTTTCCEEEEETT
T ss_pred CccCCCEEEEEeCCCC-----eEEEEEEEEecCCCe---EEE--EEEccCCEEEEEcc
Confidence 7899999999998652 899999999988664 555 56788888888743
No 42
>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana}
Probab=20.40 E-value=2.7e+02 Score=23.67 Aligned_cols=60 Identities=18% Similarity=0.209 Sum_probs=35.4
Q ss_pred CcCCCCEEEEEeeecCCCCccccEEEEEEEEecC-C-cceeEEEEeeeCceeEEEEEeecCCccceEEEeeec
Q psy12656 86 SFFVGSILSVTSADKHDPNKTRKFVGICIQKRYC-G-LRHEFVLRNVVDNLGIEIAYDMYDPTIHNITVLRLE 156 (291)
Q Consensus 86 eF~vGDiV~Vt~~i~e~K~R~q~F~GivIarr~~-G-l~sTFtLRnvi~gvGVEr~FpLySP~I~kIeVlr~g 156 (291)
+|+.|.+|.+.= ...++-.| -..+-|+ | --..+.+||++.|.-+|.+|+-- +++++....
T Consensus 33 dlrkG~~I~idG----~P~~Vve~---~~~KpGKhG~A~vr~k~knl~TGk~~E~tf~s~----~kve~~~ve 94 (167)
T 3hks_A 33 NIRKGGHIVIKN----RPCKVVEV---STSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSS----HNCDVPHVN 94 (167)
T ss_dssp GCCTTSEEEETT----EEEEEEEE---EEECSSTTCCCEEEEEEEETTTCCEEEEEEETT----SEEEEECCE
T ss_pred HccCCCEEEECC----EEEEEEEE---EEeCCCCCCceEEEEEEEEcCCCCEEEEEEcCC----CEEEeeeEE
Confidence 688888876521 11111111 1223345 2 22367799999999999999743 566665443
No 43
>2bm3_A Type 2 cohesin, scaffolding dockerin binding protein A; cellulosome, nuclear protein; 1.8A {Clostridium thermocellum} SCOP: b.2.2.2
Probab=20.12 E-value=1.4e+02 Score=25.93 Aligned_cols=31 Identities=26% Similarity=0.215 Sum_probs=25.6
Q ss_pred CCCCcCCCCEEEEEeeecCCCCccccEEEEEEEEe
Q psy12656 83 DIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKR 117 (291)
Q Consensus 83 diPeF~vGDiV~Vt~~i~e~K~R~q~F~GivIarr 117 (291)
|--...+||||..++++.. ++.|.|+=+-++
T Consensus 14 DKT~~~VGdII~Atv~vnn----I~nfAGYQvNIK 44 (166)
T 2bm3_A 14 DRNKGEVGDILIGTVRINN----IKNFAGFQVNIV 44 (166)
T ss_dssp SCSCCCTTCEEEEEEEEES----CTTEEEEEEEEE
T ss_pred cCcceeeCCEEEEEEEEcc----cccccceEEEEE
Confidence 4456799999999999986 889999877654
Done!