RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12656
         (291 letters)



>d2zjrm1 b.34.5.6 (M:2-109) Ribosomal protein L19 {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 108

 Score = 72.1 bits (177), Expect = 9e-17
 Identities = 22/104 (21%), Positives = 47/104 (45%), Gaps = 4/104 (3%)

Query: 69  KLERSDMIK---RRSVIDIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHE 124
           K+ R ++++   +     +P F  G  + V +  +  +  +++ F G+ I     G R  
Sbjct: 5   KINRGELLRGIEQDHTRQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKS 64

Query: 125 FVLRNVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRD 168
           F +R +    G+E  +    P ++ +T++   K     L YLR+
Sbjct: 65  FTVRKISFGEGVERVFPFASPLVNQVTIVERGKVRRAKLYYLRE 108


>d2j01t1 b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus
           thermophilus [TaxId: 274]}
          Length = 138

 Score = 68.5 bits (167), Expect = 5e-15
 Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 6/107 (5%)

Query: 63  RNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPN-KTRKFVGICIQKRYCGL 121
           R  + + +E   +       D+P F  G  + V+   K     + + F GI I+ R  G 
Sbjct: 3   RGALIKLVESRYVRT-----DLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGF 57

Query: 122 RHEFVLRNVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRD 168
              F +R V   +G+E  + ++ P I  I +++  +     L ++R+
Sbjct: 58  NTTFTVRKVSYGVGVERIFPLHSPLIQKIDIVQRGRARRAKLYFIRN 104


>d2gycn1 b.34.5.6 (N:1-114) Ribosomal protein L19 {Escherichia coli
           [TaxId: 562]}
          Length = 114

 Score = 62.1 bits (151), Expect = 6e-13
 Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 6/102 (5%)

Query: 68  EKLERSDMIKRRSVIDIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLRHEFV 126
           ++LE+  M +     D+PSF  G  + V     +    + + F G+ I  R  GL   F 
Sbjct: 5   KQLEQEQMKQ-----DVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFT 59

Query: 127 LRNVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRD 168
           +R + +  G+E  +  + P + +I+V R        L YLR+
Sbjct: 60  VRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRE 101


>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating)
           subunit 1 {Thermus thermophilus [TaxId: 274]}
          Length = 437

 Score = 28.6 bits (63), Expect = 0.85
 Identities = 9/38 (23%), Positives = 21/38 (55%)

Query: 213 GYKGIDDVDQHITEKMKGQKKKLEEPWEKYDLMKEYRR 250
           G   ++D+  H+ +++      L EP  ++ +++E RR
Sbjct: 19  GAASLEDLFAHLPKEILSPPIDLPEPLPEWKVLEELRR 56


>d1gpua1 c.36.1.10 (A:3-337) Transketolase (TK), PP module {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 335

 Score = 28.5 bits (63), Expect = 1.0
 Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 2/41 (4%)

Query: 218 DDVDQHITEKMKGQKKKLEEPWEKYDLMKEYRRTIPEEEQE 258
            +V  H  + +     +    W K  L  EY++  PE   E
Sbjct: 289 QEVYDHYQKTILKPGVEANNKWNK--LFSEYQKKFPELGAE 327


>d1ogpa2 d.176.1.1 (A:2-262) Sulfite oxidase, middle catalytic
           domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId:
           3702]}
          Length = 261

 Score = 25.5 bits (55), Expect = 7.8
 Identities = 15/99 (15%), Positives = 32/99 (32%), Gaps = 25/99 (25%)

Query: 131 VDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRDALPQYSTFPFDMEPEYLLDGAP 190
           V+ + ++   +           + L +  + +     D L  Y      +  ++   G P
Sbjct: 154 VEFVSVDRCKEENGGPYK--ASITLSQATNPE----ADVLLAYEMNGETLNRDH---GFP 204

Query: 191 ----VP----------INDIKVKLKPRPWVGRWERKGYK 215
               VP          ++ I V  +     G + +K YK
Sbjct: 205 LRVVVPGVIGARSVKWLDSINVIAEESQ--GFFMQKDYK 241


>d1eysc_ a.138.1.2 (C:) Photosynthetic reaction centre (cytochrome
           subunit) {Thermochromatium tepidum [TaxId: 1050]}
          Length = 310

 Score = 25.6 bits (56), Expect = 8.5
 Identities = 6/26 (23%), Positives = 10/26 (38%)

Query: 170 LPQYSTFPFDMEPEYLLDGAPVPIND 195
              Y++ PFD    +L     + I  
Sbjct: 167 TVAYASLPFDPLTPFLDQANEIRITG 192


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0654    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,141,086
Number of extensions: 58789
Number of successful extensions: 177
Number of sequences better than 10.0: 1
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 20
Length of query: 291
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 206
Effective length of database: 1,240,546
Effective search space: 255552476
Effective search space used: 255552476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.0 bits)