BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12657
(260 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VHN6|RM19_DROME 39S ribosomal protein L19, mitochondrial OS=Drosophila melanogaster
GN=mRpL19 PE=2 SV=1
Length = 306
Score = 256 bits (653), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 124/260 (47%), Positives = 168/260 (64%), Gaps = 43/260 (16%)
Query: 1 MIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNL 60
M+ RR ID+P F+VGS+L+VTS+D H KT +FVGICI + CGLR F+LRN
Sbjct: 90 MLDRRKQIDLPEFYVGSVLAVTSSDPHAAGKTSRFVGICINRDRCGLRARFILRN----- 144
Query: 61 GIEIAYDLYDPTIHNITVLRLEKRLDDDLLYLRDALPNVVDNLGIEIAYDMYDPTIHNIT 120
V+D+ G+E+ Y++YDPTI I
Sbjct: 145 --------------------------------------VIDHQGMEVVYELYDPTILKIE 166
Query: 121 VLRLEKRLDDDLLYLRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWER 180
VLRLEKRLDD L YLRDALP+YSTF +ME E L +GAPVP+NDIKV L+PRPW+ RWER
Sbjct: 167 VLRLEKRLDDSLFYLRDALPEYSTFDENMEAEPLEEGAPVPVNDIKVVLRPRPWLERWER 226
Query: 181 KGYKGIDDVDQHITEKMKGQKKKLEEPWEKYDLMKEYRRTIPEEEQEEIFSEVFSELHQL 240
+ +G+ ++D+++ +K + K+++PWEKYD+MK+YR +IPEEEQ EIF+EV +ELH L
Sbjct: 227 QNLRGVANIDEYLKDKHRLSAAKVQKPWEKYDMMKDYRSSIPEEEQTEIFAEVHTELHAL 286
Query: 241 SLSNKKLKKSRVYVKPKKTG 260
L K+ K+ R ++KPK+
Sbjct: 287 ELQRKRNKRKRTFIKPKQLA 306
>sp|Q95Y83|RM19_CAEEL Probable 39S ribosomal protein L19, mitochondrial OS=Caenorhabditis
elegans GN=Y119C1B.4 PE=3 SV=1
Length = 288
Score = 173 bits (438), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 98/259 (37%), Positives = 142/259 (54%), Gaps = 47/259 (18%)
Query: 1 MIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNL 60
M++RR IDIP F+VGSI++VTS+DK+ +K +FVGICI++ GL H+F LRN
Sbjct: 73 MLERRMNIDIPEFYVGSIVAVTSSDKNLGSKEHRFVGICIRREKEGLLHQFTLRNT---- 128
Query: 61 GIEIAYDLYDPTIHNITVLRLEKRLDDDLLYLRDALPNVVDNLGIEIAYDMYDPTIHNIT 120
++N+G+E+ YD+Y+PTI I
Sbjct: 129 ---------------------------------------IENIGVEVVYDLYNPTIKKIE 149
Query: 121 VLRLEKRLDDDLLYLRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWER 180
L+LEKRLD+DL YL DALP+YSTF F MEP+ G P+P+N+ KVKLK PW RWE
Sbjct: 150 TLKLEKRLDNDLSYLVDALPEYSTFDFHMEPQAHPAGTPIPVNECKVKLKTPPWTRRWEV 209
Query: 181 KGYKGIDDVDQHITEKMKGQ-KKKLEEPWEKYDLMKEYRRTIPEEEQ---EEIFSEVFSE 236
+GI+D T K + K + +EKYDL+ +YR + +E++ ++ + E
Sbjct: 210 ASVRGIEDTWTQATPWFKRKLHKTIVNDYEKYDLIADYRTSSTKEQEVFVQKQMQKFEKE 269
Query: 237 LHQLSLSNKKLKKSRVYVK 255
H L+ +++ KS K
Sbjct: 270 RHAAGLTRRRILKSAAAYK 288
>sp|Q5R8M4|RM19_PONAB 39S ribosomal protein L19, mitochondrial OS=Pongo abelii GN=MRPL19
PE=2 SV=1
Length = 292
Score = 164 bits (416), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 87/219 (39%), Positives = 125/219 (57%), Gaps = 46/219 (21%)
Query: 1 MIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNL 60
M++RR V+ IP F+VGSIL VT+AD + K +F+GICIQ+ GL F+LRN
Sbjct: 99 MLERRKVLHIPEFYVGSILRVTTADPYASGKISQFLGICIQRSGRGLGATFILRN----- 153
Query: 61 GIEIAYDLYDPTIHNITVLRLEKRLDDDLLYLRDALPNVVDNLGIEIAYDMYDPTIHNIT 120
V++ G+EI +++Y+P + I
Sbjct: 154 --------------------------------------VIEGQGVEICFELYNPRVQEIQ 175
Query: 121 VLRLEKRLDDDLLYLRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWER 180
V++LEKRLDD LLYLRDALP+YSTF +M+PE VP+N++KVK+KP+PW RWER
Sbjct: 176 VVKLEKRLDDSLLYLRDALPEYSTFDVNMKPEVQEPNQKVPVNELKVKMKPKPWSKRWER 235
Query: 181 KGY--KGIDDVDQHITEKMKGQKKKLEEPWEKYDLMKEY 217
+ KGI D +TE+ + +K +PW ++D+M+EY
Sbjct: 236 PNFNIKGI-RFDLCLTEEQMKEAQKWSQPWLEFDMMREY 273
>sp|Q2HJI0|RM19_BOVIN 39S ribosomal protein L19, mitochondrial OS=Bos taurus GN=MRPL19
PE=1 SV=1
Length = 292
Score = 162 bits (409), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 87/219 (39%), Positives = 123/219 (56%), Gaps = 46/219 (21%)
Query: 1 MIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNL 60
M++RR ++ IP F+VGSIL VT+AD + KT +F+GICIQ+ GL F+LRN +
Sbjct: 99 MLERRKILHIPEFYVGSILRVTTADPYANGKTSQFLGICIQRSGKGLGATFILRNTI--- 155
Query: 61 GIEIAYDLYDPTIHNITVLRLEKRLDDDLLYLRDALPNVVDNLGIEIAYDMYDPTIHNIT 120
+ G+EI +++Y+P I I
Sbjct: 156 ----------------------------------------EGQGVEICFELYNPRIQEIQ 175
Query: 121 VLRLEKRLDDDLLYLRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWER 180
V++LEKRLDD LLYLRDALP+YSTF +M+P VPIN +KVK+KP+PW RWER
Sbjct: 176 VVKLEKRLDDSLLYLRDALPEYSTFDMNMKPVAQEPSREVPINQLKVKMKPKPWSKRWER 235
Query: 181 KGY--KGIDDVDQHITEKMKGQKKKLEEPWEKYDLMKEY 217
+ KGI D +TE+ + +K +PW ++D+M+EY
Sbjct: 236 PKFNVKGI-RFDLCLTEEQMKEAQKWSQPWLEFDMMREY 273
>sp|P49406|RM19_HUMAN 39S ribosomal protein L19, mitochondrial OS=Homo sapiens GN=MRPL19
PE=1 SV=2
Length = 292
Score = 161 bits (408), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 86/219 (39%), Positives = 124/219 (56%), Gaps = 46/219 (21%)
Query: 1 MIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNL 60
M++RR V+ IP F+VGSIL VT+AD + K +F+GICIQ+ GL F+LRNV
Sbjct: 99 MLERRKVLHIPEFYVGSILRVTTADPYASGKISQFLGICIQRSGRGLGATFILRNV---- 154
Query: 61 GIEIAYDLYDPTIHNITVLRLEKRLDDDLLYLRDALPNVVDNLGIEIAYDMYDPTIHNIT 120
++ G+EI +++Y+P + I
Sbjct: 155 ---------------------------------------IEGQGVEICFELYNPRVQEIQ 175
Query: 121 VLRLEKRLDDDLLYLRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWER 180
V++LEKRLDD LLYLRDALP+YSTF +M+P VP+N++KVK+KP+PW RWER
Sbjct: 176 VVKLEKRLDDSLLYLRDALPEYSTFDVNMKPVVQEPNQKVPVNELKVKMKPKPWSKRWER 235
Query: 181 KGY--KGIDDVDQHITEKMKGQKKKLEEPWEKYDLMKEY 217
+ KGI D +TE+ + +K +PW ++D+M+EY
Sbjct: 236 PNFNIKGI-RFDLCLTEQQMKEAQKWNQPWLEFDMMREY 273
>sp|Q9D338|RM19_MOUSE 39S ribosomal protein L19, mitochondrial OS=Mus musculus GN=Mrpl19
PE=2 SV=1
Length = 292
Score = 159 bits (401), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 86/219 (39%), Positives = 122/219 (55%), Gaps = 46/219 (21%)
Query: 1 MIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNL 60
M+ RR V+ IP F+VGSIL VT+AD + KT +F+GICI++ GL F LRN +
Sbjct: 99 MLDRRKVLPIPEFYVGSILRVTTADPYASGKTSQFLGICIKRSGNGLGATFTLRNTI--- 155
Query: 61 GIEIAYDLYDPTIHNITVLRLEKRLDDDLLYLRDALPNVVDNLGIEIAYDMYDPTIHNIT 120
+ G+EI +++Y+P I I
Sbjct: 156 ----------------------------------------EGQGVEICFELYNPRIQEIQ 175
Query: 121 VLRLEKRLDDDLLYLRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWER 180
V++LEKRLDD+LLYLRDALP+YSTF +M+P VP+N +KVK+KP+PW RWER
Sbjct: 176 VVKLEKRLDDNLLYLRDALPEYSTFDVNMKPVPQEACQEVPVNKLKVKMKPKPWSKRWER 235
Query: 181 KGY--KGIDDVDQHITEKMKGQKKKLEEPWEKYDLMKEY 217
+ KGI D +TE+ + +K +PW ++D+M+EY
Sbjct: 236 PNFNIKGI-RFDLALTEEQMKEAQKWNKPWIEFDMMREY 273
>sp|A0RPR5|RL19_CAMFF 50S ribosomal protein L19 OS=Campylobacter fetus subsp. fetus
(strain 82-40) GN=rplS PE=3 SV=1
Length = 118
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 9 DIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNV-VDNLGIEIAY 66
+P F G L + K D + + F GICI +R G F++R + +++G+E +
Sbjct: 18 SVPDFRAGDTLRIAIRIKEGDKTRVQNFEGICIARRGSGSGETFIIRKIGANSVGVERIF 77
Query: 67 DLYDPTIHNITVLRLEKRLDDDLLYLRD 94
+Y ++ +ITVLR + L YLRD
Sbjct: 78 PIYSESLESITVLRRGRIRRSKLFYLRD 105
>sp|A7GZB0|RL19_CAMC5 50S ribosomal protein L19 OS=Campylobacter curvus (strain 525.92)
GN=rplS PE=3 SV=1
Length = 118
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 9 DIPSFFVGSILSVTSADKHDPNKTR--KFVGICIQKRYCGLRHEFVLRNV-VDNLGIEIA 65
+P F G L V + H+ +KTR F GICI +R G+ F++R + +++G+E
Sbjct: 18 SVPDFRAGDTLRV-AIRIHEGDKTRVQNFEGICIARRGSGVGETFIIRKIGANSVGVERI 76
Query: 66 YDLYDPTIHNITVLRLEKRLDDDLLYLRD 94
+ +Y +I I VLR + L YLRD
Sbjct: 77 FPIYSDSIEEIVVLRKGRVRRAKLFYLRD 105
>sp|Q7MA03|RL19_WOLSU 50S ribosomal protein L19 OS=Wolinella succinogenes (strain ATCC
29543 / DSM 1740 / LMG 7466 / NCTC 11488 / FDC 602W)
GN=rplS PE=3 SV=1
Length = 118
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 9 DIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNV-VDNLGIEIAY 66
+IP F G L V + D + + F GICI R G F +R + +N+G+E +
Sbjct: 18 NIPQFKAGDTLRVGVKIQEGDKTRVQNFEGICISVRGTGTGKTFTIRKMGANNVGVERIF 77
Query: 67 DLYDPTIHNITVLRLEKRLDDDLLYLRD 94
LY ++ ++T+LR+ + L YLRD
Sbjct: 78 PLYSDSLESVTLLRVGRVRRAKLYYLRD 105
>sp|Q8EWU9|RL19_MYCPE 50S ribosomal protein L19 OS=Mycoplasma penetrans (strain HF-2)
GN=rplS PE=3 SV=1
Length = 145
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 9 DIPSFFVG-SILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 67
DIP F G +I+ +++ ++ +KF G+ I++R GL ++R +G+E +
Sbjct: 23 DIPEFRSGDTIIVHNKIIENNKSRIQKFEGVVIRRRGSGLSETIIVRKESSGIGVERIFQ 82
Query: 68 LYDPTIHNITVLRLEKRLDDDLLYLRD 94
L+ P I I V+RL K L YLR+
Sbjct: 83 LHSPQIEKIEVIRLGKVRRAYLTYLRE 109
>sp|Q74FG1|RL19_GEOSL 50S ribosomal protein L19 OS=Geobacter sulfurreducens (strain ATCC
51573 / DSM 12127 / PCA) GN=rplS PE=3 SV=1
Length = 118
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 9 DIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 67
+IP F G L V + D ++ + F G+CI ++ G+R F +R + +N+G+E +
Sbjct: 15 NIPPFKPGDTLKVHVKIVEGDKSRIQAFQGVCISRQNGGIRESFTVRKISNNIGVERVFP 74
Query: 68 LYDPTIHNITVLRLEKRLDDDLLYLR 93
L+ PT+ I V+ L YLR
Sbjct: 75 LHSPTVDAIEVITRGHVRRAKLYYLR 100
>sp|Q3A2E9|RL19_PELCD 50S ribosomal protein L19 OS=Pelobacter carbinolicus (strain DSM
2380 / Gra Bd 1) GN=rplS PE=3 SV=1
Length = 115
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 9 DIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 67
DIP+F G L V + D + + F G+CI++ GL F +R + D +G+E +
Sbjct: 15 DIPAFKAGDTLRVHVKIVEGDKRRIQVFQGVCIKRHNKGLGSTFTVRKISDGMGVERVFP 74
Query: 68 LYDPTIHNITVLRLEKRLDDDLLYLR 93
L+ P I I V+ + + L YLR
Sbjct: 75 LHSPNIDKIEVMMVGRVRRAKLYYLR 100
>sp|A7ZDX6|RL19_CAMC1 50S ribosomal protein L19 OS=Campylobacter concisus (strain 13826)
GN=rplS PE=3 SV=1
Length = 118
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 9 DIPSFFVGSILSVTSADKHDPNKTR--KFVGICIQKRYCGLRHEFVLRNV-VDNLGIEIA 65
+IP F G L V + H+ +KTR F GICI +R G F++R + +++G+E
Sbjct: 18 NIPDFRAGDTLRVAT-RIHEGDKTRIQNFEGICIARRGSGTGETFIIRKIGANSVGVERI 76
Query: 66 YDLYDPTIHNITVLRLEKRLDDDLLYLRD 94
+ ++ +I I VLR + L YLR+
Sbjct: 77 FPIFSDSIEEIKVLRKGRVRRAKLFYLRE 105
>sp|A7I0V8|RL19_CAMHC 50S ribosomal protein L19 OS=Campylobacter hominis (strain ATCC
BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=rplS PE=3
SV=1
Length = 118
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 9 DIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDN-LGIEIAY 66
++P F G L + K + + + F GICI +R G+ F++R + N +G+E +
Sbjct: 18 NVPDFRAGDTLKLAIRIKEGEKTRIQNFEGICIARRGSGVGETFIVRKIGANGIGVERIF 77
Query: 67 DLYDPTIHNITVLRLEKRLDDDLLYLRD 94
+Y ++ NI VLR L YLRD
Sbjct: 78 PIYSESLENIEVLRKGNVRRSKLFYLRD 105
>sp|A1RMB5|RL19_SHESW 50S ribosomal protein L19 OS=Shewanella sp. (strain W3-18-1)
GN=rplS PE=3 SV=1
Length = 117
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 9 DIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 67
D+P+F G + V + D + + F G+ I KR GL F +R + + G+E A+
Sbjct: 16 DVPAFGAGDTVVVQVRVKEGDKERLQAFEGVVIAKRNRGLHSAFTVRKISNGEGVERAFQ 75
Query: 68 LYDPTIHNITVLRLEKRLDDDLLYLRD 94
+ P I +I V R + L YLRD
Sbjct: 76 THSPLIASIEVKRRGRVRRAKLYYLRD 102
>sp|Q0HSK4|RL19_SHESR 50S ribosomal protein L19 OS=Shewanella sp. (strain MR-7) GN=rplS
PE=3 SV=1
Length = 117
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 9 DIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 67
D+P+F G + V + D + + F G+ I KR GL F +R + + G+E A+
Sbjct: 16 DVPAFGAGDTVVVQVRVKEGDKERLQAFEGVVIAKRNRGLHSAFTVRKISNGEGVERAFQ 75
Query: 68 LYDPTIHNITVLRLEKRLDDDLLYLRD 94
+ P I +I V R + L YLRD
Sbjct: 76 THSPLIASIEVKRRGRVRRAKLYYLRD 102
>sp|Q0HGB1|RL19_SHESM 50S ribosomal protein L19 OS=Shewanella sp. (strain MR-4) GN=rplS
PE=3 SV=1
Length = 117
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 9 DIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 67
D+P+F G + V + D + + F G+ I KR GL F +R + + G+E A+
Sbjct: 16 DVPAFGAGDTVVVQVRVKEGDKERLQAFEGVVIAKRNRGLHSAFTVRKISNGEGVERAFQ 75
Query: 68 LYDPTIHNITVLRLEKRLDDDLLYLRD 94
+ P I +I V R + L YLRD
Sbjct: 76 THSPLIASIEVKRRGRVRRAKLYYLRD 102
>sp|A0KZM0|RL19_SHESA 50S ribosomal protein L19 OS=Shewanella sp. (strain ANA-3) GN=rplS
PE=3 SV=1
Length = 117
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 9 DIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 67
D+P+F G + V + D + + F G+ I KR GL F +R + + G+E A+
Sbjct: 16 DVPAFGAGDTVVVQVRVKEGDKERLQAFEGVVIAKRNRGLHSAFTVRKISNGEGVERAFQ 75
Query: 68 LYDPTIHNITVLRLEKRLDDDLLYLRD 94
+ P I +I V R + L YLRD
Sbjct: 76 THSPLIASIEVKRRGRVRRAKLYYLRD 102
>sp|A4Y4L6|RL19_SHEPC 50S ribosomal protein L19 OS=Shewanella putrefaciens (strain CN-32
/ ATCC BAA-453) GN=rplS PE=3 SV=1
Length = 117
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 9 DIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 67
D+P+F G + V + D + + F G+ I KR GL F +R + + G+E A+
Sbjct: 16 DVPAFGAGDTVVVQVRVKEGDKERLQAFEGVVIAKRNRGLHSAFTVRKISNGEGVERAFQ 75
Query: 68 LYDPTIHNITVLRLEKRLDDDLLYLRD 94
+ P I +I V R + L YLRD
Sbjct: 76 THSPLIASIEVKRRGRVRRAKLYYLRD 102
>sp|Q8EH70|RL19_SHEON 50S ribosomal protein L19 OS=Shewanella oneidensis (strain MR-1)
GN=rplS PE=3 SV=1
Length = 117
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 9 DIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 67
D+P+F G + V + D + + F G+ I KR GL F +R + + G+E A+
Sbjct: 16 DVPAFGAGDTVVVQVRVKEGDKERLQAFEGVVIAKRNRGLHSAFTVRKISNGEGVERAFQ 75
Query: 68 LYDPTIHNITVLRLEKRLDDDLLYLRD 94
+ P I +I V R + L YLRD
Sbjct: 76 THSPLIASIEVKRRGRVRRAKLYYLRD 102
>sp|A9L5P8|RL19_SHEB9 50S ribosomal protein L19 OS=Shewanella baltica (strain OS195)
GN=rplS PE=3 SV=1
Length = 117
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 9 DIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 67
D+P+F G + V + D + + F G+ I KR GL F +R + + G+E A+
Sbjct: 16 DVPAFGAGDTVVVQVRVKEGDKERLQAFEGVVIAKRNRGLHSAFTVRKISNGEGVERAFQ 75
Query: 68 LYDPTIHNITVLRLEKRLDDDLLYLRD 94
+ P I +I V R + L YLRD
Sbjct: 76 THSPLIASIEVKRRGRVRRAKLYYLRD 102
>sp|A6WKR9|RL19_SHEB8 50S ribosomal protein L19 OS=Shewanella baltica (strain OS185)
GN=rplS PE=3 SV=1
Length = 117
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 9 DIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 67
D+P+F G + V + D + + F G+ I KR GL F +R + + G+E A+
Sbjct: 16 DVPAFGAGDTVVVQVRVKEGDKERLQAFEGVVIAKRNRGLHSAFTVRKISNGEGVERAFQ 75
Query: 68 LYDPTIHNITVLRLEKRLDDDLLYLRD 94
+ P I +I V R + L YLRD
Sbjct: 76 THSPLIASIEVKRRGRVRRAKLYYLRD 102
>sp|A3D1W8|RL19_SHEB5 50S ribosomal protein L19 OS=Shewanella baltica (strain OS155 /
ATCC BAA-1091) GN=rplS PE=3 SV=1
Length = 117
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 9 DIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 67
D+P+F G + V + D + + F G+ I KR GL F +R + + G+E A+
Sbjct: 16 DVPAFGAGDTVVVQVRVKEGDKERLQAFEGVVIAKRNRGLHSAFTVRKISNGEGVERAFQ 75
Query: 68 LYDPTIHNITVLRLEKRLDDDLLYLRD 94
+ P I +I V R + L YLRD
Sbjct: 76 THSPLIASIEVKRRGRVRRAKLYYLRD 102
>sp|B8EBP0|RL19_SHEB2 50S ribosomal protein L19 OS=Shewanella baltica (strain OS223)
GN=rplS PE=3 SV=1
Length = 117
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 9 DIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 67
D+P+F G + V + D + + F G+ I KR GL F +R + + G+E A+
Sbjct: 16 DVPAFGAGDTVVVQVRVKEGDKERLQAFEGVVIAKRNRGLHSAFTVRKISNGEGVERAFQ 75
Query: 68 LYDPTIHNITVLRLEKRLDDDLLYLRD 94
+ P I +I V R + L YLRD
Sbjct: 76 THSPLIASIEVKRRGRVRRAKLYYLRD 102
>sp|Q5FGP4|RL19_EHRRG 50S ribosomal protein L19 OS=Ehrlichia ruminantium (strain Gardel)
GN=rplS PE=3 SV=2
Length = 125
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 9 DIPSFFVGSILSVTSADKHDPN-KTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 67
+IP F G L VT + + F G+CI+KR GL F LR + N I++
Sbjct: 20 EIPKFKSGDTLRVTMKIFDSAGERIQTFEGVCIKKRNNGLHSSFTLRKISYNESIQLQIF 79
Query: 68 LYDPTIHNITVLRLEKRLDDDLLYL 92
LY PTI +I V++ K L Y+
Sbjct: 80 LYSPTIESIEVVKFGKVRRAKLYYM 104
>sp|Q97I93|RL19_CLOAB 50S ribosomal protein L19 OS=Clostridium acetobutylicum (strain
ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
GN=rplS PE=3 SV=1
Length = 114
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 9 DIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 67
D+PSF VG + + K + + + F G I+++ GLR F +R V +G+E +
Sbjct: 16 DLPSFNVGDTVRIEVRIKEGEKERLQAFEGTVIKRQNGGLRETFTVRRVAYGVGVERTFP 75
Query: 68 LYDPTIHNITVLRLEKRLDDDLLYLRD 94
L P I + V+R K L YLRD
Sbjct: 76 LNAPVIAGLKVVRRGKVRRAKLYYLRD 102
>sp|C6E5I6|RL19_GEOSM 50S ribosomal protein L19 OS=Geobacter sp. (strain M21) GN=rplS
PE=3 SV=1
Length = 118
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 9 DIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 67
+IP F G + V + D ++ + F G+C+ ++ G+R F +R + + +G+E +
Sbjct: 15 NIPKFIPGDTIKVQVKIVEGDKSRIQAFQGVCLGRQNGGIRESFTVRKISNGVGVERVFP 74
Query: 68 LYDPTIHNITVLRLEKRLDDDLLYLR 93
L+ P+I I V+ + L YLR
Sbjct: 75 LHSPSIEAIEVVTRGQVRRAKLYYLR 100
>sp|B5EBC7|RL19_GEOBB 50S ribosomal protein L19 OS=Geobacter bemidjiensis (strain Bem /
ATCC BAA-1014 / DSM 16622) GN=rplS PE=3 SV=1
Length = 118
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 9 DIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 67
+IP F G + V + D ++ + F G+C+ ++ G+R F +R + + +G+E +
Sbjct: 15 NIPKFIPGDTIKVQVKIVEGDKSRIQAFQGVCLGRQNGGIRESFTVRKISNGVGVERVFP 74
Query: 68 LYDPTIHNITVLRLEKRLDDDLLYLR 93
L+ P+I I V+ + L YLR
Sbjct: 75 LHSPSIEAIEVVTRGQVRRAKLYYLR 100
>sp|B2A2P3|RL19_NATTJ 50S ribosomal protein L19 OS=Natranaerobius thermophilus (strain
ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=rplS PE=3
SV=1
Length = 113
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Query: 9 DIPSFFVG-SILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 67
DIP F G S+ + + + F GI I+K+ GLR F +R +G+E +
Sbjct: 15 DIPDFKTGDSVRVYVKVVEGQRERQQPFEGIVIRKKGSGLRETFTVRRTSFGVGVERTFP 74
Query: 68 LYDPTIHNITVLRLEKRLDDDLLYLRDALPNVVDNLGI 105
++ P + I VLR K L YLRD GI
Sbjct: 75 VHSPKLGKIEVLRRGKTRRAKLYYLRDLKGKAARVKGI 112
>sp|Q5H9Z6|RL19_EHRRW 50S ribosomal protein L19 OS=Ehrlichia ruminantium (strain
Welgevonden) GN=rplS PE=3 SV=1
Length = 125
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 9 DIPSFFVGSILSVTSADKHDPN-KTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 67
+IP F G L VT + + F G+CI++R GL F LR + N I++
Sbjct: 20 EIPKFKSGDTLRVTMKIFDSAGERIQTFEGVCIKRRNNGLHSSFTLRKISYNESIQLQVF 79
Query: 68 LYDPTIHNITVLRLEKRLDDDLLYL 92
LY PTI +I V++ K L Y+
Sbjct: 80 LYSPTIESIEVVKFGKVRRAKLYYM 104
>sp|C1DSZ9|RL19_AZOVD 50S ribosomal protein L19 OS=Azotobacter vinelandii (strain DJ /
ATCC BAA-1303) GN=rplS PE=3 SV=1
Length = 116
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 9 DIPSFFVG-SILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 67
+IP+F G +++ + + + + F G+ I KR GL F +R + +G+E +
Sbjct: 17 EIPAFAPGDTVIVQVKVKEGERQRLQAFEGVVIGKRNRGLNSAFTVRKISSGVGVERTFQ 76
Query: 68 LYDPTIHNITVLRLEKRLDDDLLYLRD 94
Y P + +ITV R L YLRD
Sbjct: 77 TYSPLVDSITVKRRGDVRKAKLYYLRD 103
>sp|Q7U583|RL19_SYNPX 50S ribosomal protein L19 OS=Synechococcus sp. (strain WH8102)
GN=rplS PE=3 SV=1
Length = 154
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 9 DIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 67
D+P +VG + V + + + + + G+ I KR+ G+ +R + +G+E +
Sbjct: 54 DLPEIYVGDTVRVGVRISEGNKERVQPYEGVVISKRHGGMNQTITVRRIFQGIGVERVFM 113
Query: 68 LYDPTIHNITVLRLEKRLDDDLLYLRD 94
L+ P + NI V R K L YLR+
Sbjct: 114 LHSPQVANIKVERRGKVRRAKLFYLRE 140
>sp|A0ZZY0|RL19_BIFAA 50S ribosomal protein L19 OS=Bifidobacterium adolescentis (strain
ATCC 15703 / DSM 20083 / NCTC 11814 / E194a) GN=rplS
PE=3 SV=2
Length = 121
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 9 DIPSFFVGSILSVTSADKHDPN-KTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 67
+IP+F G + V K N + + F G+ I ++ G+R FV+R + G+E +
Sbjct: 18 EIPAFRPGDTVEVNVKIKEGNNSRIQAFTGVVIARQGGGVRETFVVRKISFGTGVERRFP 77
Query: 68 LYDPTIHNITVLRLEKRLDDDLLYLRD 94
L+ P I +I V+R + L YLR+
Sbjct: 78 LHSPAIDSIKVVRKGRVRRAKLYYLRN 104
>sp|A9KLM0|RL19_CLOPH 50S ribosomal protein L19 OS=Clostridium phytofermentans (strain
ATCC 700394 / DSM 18823 / ISDg) GN=rplS PE=3 SV=1
Length = 115
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 9 DIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 67
++ F VG + V + K + +T+ F G+ ++++ G R F +R + +G+E +
Sbjct: 16 EVSKFHVGDTVKVYAKVKEGNRERTQVFEGVVLKRQNGGARETFTVRKQSNGVGVEKTWP 75
Query: 68 LYDPTIHNITVLRLEKRLDDDLLYLRD 94
++ P + + V+RL K L YLRD
Sbjct: 76 VHSPIVEKVEVVRLGKVRRAKLTYLRD 102
>sp|Q1I5Z1|RL19_PSEE4 50S ribosomal protein L19 OS=Pseudomonas entomophila (strain L48)
GN=rplS PE=3 SV=1
Length = 116
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 9 DIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 67
+IP+F G + V + D ++ + F G+ I KR GL F +R + +G+E +
Sbjct: 17 EIPTFAPGDTVVVQVKVKEGDRSRLQAFEGVVIAKRNRGLNSAFTVRKISSGVGVERTFQ 76
Query: 68 LYDPTIHNITVLRLEKRLDDDLLYLRD 94
Y P I ++ V R L YLRD
Sbjct: 77 TYSPQIDSLAVKRRGDVRKAKLYYLRD 103
>sp|Q8UBZ5|RL19_AGRT5 50S ribosomal protein L19 OS=Agrobacterium tumefaciens (strain C58
/ ATCC 33970) GN=rplS PE=3 SV=1
Length = 179
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
Query: 10 IPSFFVGSILSVTSADKHDPNKTR--KFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 67
+P F G L V + + N+TR + G+CI + GL F +R + G+E +
Sbjct: 22 LPEFSPGDTLRV-NVRVTEGNRTRVQAYEGVCIARSGGGLSESFTVRKISYGEGVERVFP 80
Query: 68 LYDPTIHNITVLRLEKRLDDDLLYLRD---ALPNVVDNLG 104
+Y P + + ++R K L YLRD +V+N G
Sbjct: 81 IYSPLVEGVEIVRRGKVRRAKLYYLRDRRGKAARIVENTG 120
>sp|P82413|RK19_SPIOL 50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea
GN=RPL19 PE=1 SV=2
Length = 233
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%)
Query: 10 IPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDLY 69
+P G I+ + + + + GI I ++ G+ +R ++ +G+EI + LY
Sbjct: 140 VPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTTIRIRRIIAGVGVEIVFPLY 199
Query: 70 DPTIHNITVLRLEKRLDDDLLYLRDALP 97
P I I V+ K L YLRD LP
Sbjct: 200 SPNIKEIKVVSHRKVRKARLYYLRDKLP 227
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 99 VVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRDALPQYSTF 145
++ +G+EI + +Y P I I V+ K L YLRD LP+ STF
Sbjct: 186 IIAGVGVEIVFPLYSPNIKEIKVVSHRKVRKARLYYLRDKLPRLSTF 232
>sp|Q4KHQ5|RL19_PSEF5 50S ribosomal protein L19 OS=Pseudomonas fluorescens (strain Pf-5 /
ATCC BAA-477) GN=rplS PE=3 SV=1
Length = 116
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 9 DIPSFFVG-SILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 67
+IP+F G +I+ + D ++ + F G+ I KR G+ F +R + + +G+E +
Sbjct: 17 EIPAFAPGDTIVVQVKVKEGDRSRLQAFEGVVIAKRNRGVNSAFTVRKISNGVGVERTFQ 76
Query: 68 LYDPTIHNITVLRLEKRLDDDLLYLRD 94
Y P I ++ V R L YLRD
Sbjct: 77 TYSPQIDSMAVKRRGDVRKAKLYYLRD 103
>sp|Q2VZV5|RL19_MAGSA 50S ribosomal protein L19 OS=Magnetospirillum magneticum (strain
AMB-1 / ATCC 700264) GN=rplS PE=3 SV=1
Length = 148
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 10 IPSFFVGSILSVT-SADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDL 68
+PSF G L V + + + + + G+CI ++ GL FV+R + G+E + L
Sbjct: 22 VPSFAPGDTLKVNVKVIEGNRERVQAYEGVCIARKNDGLNSSFVVRKISYGEGVERIFPL 81
Query: 69 YDPTIHNITVLRLEKRLDDDLLYLRD 94
Y P I +I V+R L YLRD
Sbjct: 82 YSPNIASIEVVRRGDVRRAKLYYLRD 107
>sp|Q3KHJ1|RL19_PSEPF 50S ribosomal protein L19 OS=Pseudomonas fluorescens (strain Pf0-1)
GN=rplS PE=3 SV=1
Length = 116
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 9 DIPSFFVG-SILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 67
+IP+F G +I+ + D ++ + F G+ I KR G+ F +R + + +G+E +
Sbjct: 17 EIPTFAPGDTIVVQVKVKEGDRSRLQAFEGVVIAKRNRGVNSAFTVRKISNGVGVERTFQ 76
Query: 68 LYDPTIHNITVLRLEKRLDDDLLYLRD 94
Y P I ++ V R L YLRD
Sbjct: 77 TYSPQIDSMAVKRRGDVRKAKLYYLRD 103
>sp|C3K1G8|RL19_PSEFS 50S ribosomal protein L19 OS=Pseudomonas fluorescens (strain SBW25)
GN=rplS PE=3 SV=1
Length = 116
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 9 DIPSFFVG-SILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 67
+IP+F G +I+ + D ++ + F G+ I KR G+ F +R + + +G+E +
Sbjct: 17 EIPTFAPGDTIVVQVKVKEGDRSRLQAFEGVVIAKRNRGVNSAFTVRKISNGVGVERTFQ 76
Query: 68 LYDPTIHNITVLRLEKRLDDDLLYLRD 94
Y P I ++ V R L YLRD
Sbjct: 77 TYSPQIDSMAVKRRGDVRKAKLYYLRD 103
>sp|Q1GPJ8|RL19_SPHAL 50S ribosomal protein L19 OS=Sphingopyxis alaskensis (strain DSM
13593 / LMG 18877 / RB2256) GN=rplS PE=3 SV=1
Length = 125
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 9 DIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 67
DIP+F G L V + + + + F G+CI + G+ F +R + G+E +
Sbjct: 18 DIPTFRPGDTLKVGVKVVEGERTRVQNFEGVCIARSNKGMGSNFTVRKMSFGEGVERVFP 77
Query: 68 LYDPTIHNITVLRLEKRLDDDLLYLRD 94
LY P I +ITV+R L YLR
Sbjct: 78 LYSPNIDSITVVRKGAVRRAKLYYLRG 104
>sp|Q4FQ45|RL19_PSYA2 50S ribosomal protein L19 OS=Psychrobacter arcticus (strain DSM
17307 / 273-4) GN=rplS PE=3 SV=1
Length = 130
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 1 MIKRRSVIDIPSFFVG-SILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDN 59
+I+ +I+ PSF G +++ + + + + F G+ I KR GL F +R +
Sbjct: 10 VIENAQLIERPSFAPGDTVVVQVKVREGERERLQAFEGVVIAKRNRGLNSAFTVRKISSG 69
Query: 60 LGIEIAYDLYDPTIHNITVLRLEKRLDDDLLYLRD 94
+G+E A+ L+ P I +I V R L YLR+
Sbjct: 70 VGVERAFQLHSPIIDSIEVKRRGAVRRAKLYYLRE 104
>sp|Q1Q8A7|RL19_PSYCK 50S ribosomal protein L19 OS=Psychrobacter cryohalolentis (strain
K5) GN=rplS PE=3 SV=1
Length = 142
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 1 MIKRRSVIDIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDN 59
+I+ +I+ PSF G + V + + + + F G+ I KR GL F +R +
Sbjct: 10 VIENAQLIERPSFAPGDTVVVQVKVREGERERLQAFEGVVIAKRNRGLNSAFTVRKISSG 69
Query: 60 LGIEIAYDLYDPTIHNITVLRLEKRLDDDLLYLRD 94
+G+E A+ L+ P I +I V R L YLR+
Sbjct: 70 VGVERAFQLHSPIIDSIEVKRRGAVRRAKLYYLRE 104
>sp|B2IFY8|RL19_BEII9 50S ribosomal protein L19 OS=Beijerinckia indica subsp. indica
(strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rplS PE=3
SV=1
Length = 148
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 10 IPSFFVG-SILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDL 68
IP+F G +++ + + + + + G+CI + GL F +R + G+E + +
Sbjct: 21 IPAFQPGDTVIVNVKVKEGERTRVQAYEGVCIARNGGGLNESFTVRKISYGEGVERVFPI 80
Query: 69 YDPTIHNITVLRLEKRLDDDLLYLRD 94
Y P I +I V+R K L YLRD
Sbjct: 81 YSPNIDSIKVVRRGKVRRAKLYYLRD 106
>sp|Q895M1|RL19_CLOTE 50S ribosomal protein L19 OS=Clostridium tetani (strain
Massachusetts / E88) GN=rplS PE=3 SV=2
Length = 115
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 9 DIPSFFVGSILSVTSADKHDPN-KTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 67
D+P+F VG + V K + + F G I+++ GLR F +R + +G+E +
Sbjct: 16 DLPAFKVGDTVKVHVKIKEGTRERIQVFEGTVIKRQNGGLRETFTVRRLAYGVGVERTFP 75
Query: 68 LYDPTIHNITVLRLEKRLDDDLLYLRD 94
+ PT+ I ++R K L YLRD
Sbjct: 76 VNAPTVSKIEIVRKGKVRRAKLFYLRD 102
>sp|Q11CQ9|RL19_MESSB 50S ribosomal protein L19 OS=Mesorhizobium sp. (strain BNC1)
GN=rplS PE=3 SV=1
Length = 166
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 10 IPSFFVGSILSVTSADKHDPNKTR--KFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 67
+P F G L V + N+TR F G+CI + GL+ F +R + G+E +
Sbjct: 21 LPDFSPGDTLRV-QVRVTEGNRTRVQAFEGVCIARSGSGLQENFTVRKISYGEGVERVFP 79
Query: 68 LYDPTIHNITVLRLEKRLDDDLLYLRD 94
+Y P + + V+R K L YLRD
Sbjct: 80 VYSPLVEAVEVVRRGKVRRAKLYYLRD 106
>sp|B1JDE2|RL19_PSEPW 50S ribosomal protein L19 OS=Pseudomonas putida (strain W619)
GN=rplS PE=3 SV=1
Length = 116
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 9 DIPSFFVG-SILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 67
+IP+F G +I+ + + ++ + F G+ I KR GL F +R + +G+E +
Sbjct: 17 EIPTFAPGDTIVVQVKVKEGERSRLQAFEGVVIAKRNRGLNSAFTVRKISSGVGVERTFQ 76
Query: 68 LYDPTIHNITVLRLEKRLDDDLLYLRD 94
Y P I ++ V R L YLRD
Sbjct: 77 TYSPQIDSLAVKRRGDVRKAKLYYLRD 103
>sp|A4XXT4|RL19_PSEMY 50S ribosomal protein L19 OS=Pseudomonas mendocina (strain ymp)
GN=rplS PE=3 SV=1
Length = 116
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 9 DIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 67
+IP+F G + V + D + + F G+ I KR GL F +R + +G+E +
Sbjct: 17 EIPTFAPGDTVVVQVKVKEGDRQRLQAFEGVVIAKRNRGLNSAFTVRKISSGVGVERTFQ 76
Query: 68 LYDPTIHNITVLRLEKRLDDDLLYLRD 94
Y P + +++V R L YLRD
Sbjct: 77 TYSPLVDSLSVKRRGDVRKAKLYYLRD 103
>sp|A9VT78|RL19_BACWK 50S ribosomal protein L19 OS=Bacillus weihenstephanensis (strain
KBAB4) GN=rplS PE=3 SV=1
Length = 114
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 9 DIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 67
D+PSF G L V + + + F G+ I++R G+ F +R + +G+E +
Sbjct: 16 DLPSFRPGDTLRVHVKVVEGTRERIQLFEGVVIKRRGGGISETFTVRKISYGVGVERTFP 75
Query: 68 LYDPTIHNITVLRLEKRLDDDLLYLRD 94
++ P I NI VLR K L YLR+
Sbjct: 76 VHTPRIANIEVLRRGKVRRAKLYYLRN 102
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.141 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,552,260
Number of Sequences: 539616
Number of extensions: 4854384
Number of successful extensions: 16388
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 137
Number of HSP's that attempted gapping in prelim test: 15118
Number of HSP's gapped (non-prelim): 1403
length of query: 260
length of database: 191,569,459
effective HSP length: 115
effective length of query: 145
effective length of database: 129,513,619
effective search space: 18779474755
effective search space used: 18779474755
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)