Query psy12657
Match_columns 260
No_of_seqs 153 out of 932
Neff 3.4
Searched_HMMs 29240
Date Fri Aug 16 16:11:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12657.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12657hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ftc_K 39S ribosomal protein L 100.0 4.3E-44 1.5E-48 284.4 11.5 89 10-98 1-89 (98)
2 3r8s_P 50S ribosomal protein L 100.0 1.6E-40 5.4E-45 270.1 10.5 93 6-98 12-105 (114)
3 3v2d_T 50S ribosomal protein L 100.0 1.5E-39 5.1E-44 273.7 11.6 93 6-98 15-108 (146)
4 2zjr_M 50S ribosomal protein L 100.0 6.4E-40 2.2E-44 280.6 9.0 93 6-98 20-113 (166)
5 3bbo_R Ribosomal protein L19; 100.0 3.1E-38 1.1E-42 281.2 -6.8 94 5-98 135-228 (233)
6 3bbo_R Ribosomal protein L19; 98.9 1.2E-10 4.1E-15 104.2 0.0 49 98-146 185-233 (233)
7 2ftc_K 39S ribosomal protein L 98.3 2.4E-07 8.1E-12 73.7 1.9 53 98-150 46-98 (98)
8 3r8s_P 50S ribosomal protein L 98.1 8.7E-07 3E-11 72.1 2.7 42 98-139 62-103 (114)
9 3v2d_T 50S ribosomal protein L 98.1 1.2E-06 4.2E-11 73.9 2.9 42 98-139 65-106 (146)
10 2zjr_M 50S ribosomal protein L 98.0 2.1E-06 7.2E-11 73.8 2.0 49 98-146 70-118 (166)
11 2vc8_A Enhancer of mRNA-decapp 81.8 7.8 0.00027 30.0 8.1 57 14-82 7-70 (84)
12 2rm4_A CG6311-PB, DM EDC3; enh 67.1 22 0.00075 28.4 7.4 58 14-82 10-73 (103)
13 4a53_A EDC3; RNA binding prote 66.2 6 0.00021 32.6 4.1 53 15-82 11-65 (125)
14 4he6_A Peptidase family U32; u 54.0 13 0.00045 27.2 3.8 36 30-65 3-39 (89)
15 3cnr_A Type IV fimbriae assemb 49.5 38 0.0013 26.7 6.0 48 12-65 41-88 (117)
16 1nz9_A Transcription antitermi 47.2 30 0.001 23.5 4.5 28 12-45 4-31 (58)
17 4fm4_B NitrIle hydratase beta 43.4 18 0.00063 31.4 3.6 35 10-44 116-154 (206)
18 2e6z_A Transcription elongatio 40.3 17 0.00057 25.4 2.4 28 11-44 6-33 (59)
19 1jb7_A Telomere-binding protei 39.2 18 0.00063 35.0 3.2 44 6-55 106-150 (495)
20 3m4w_A Sigma-E factor regulato 39.1 58 0.002 29.2 6.3 50 30-82 15-64 (295)
21 2eif_A IF-5A, protein (eukaryo 36.5 34 0.0012 27.5 4.0 50 9-69 12-67 (136)
22 3p8b_B Transcription antitermi 33.7 46 0.0016 26.5 4.3 48 10-65 89-138 (152)
23 3d6x_A (3R)-hydroxymyristoyl-[ 33.0 36 0.0012 26.0 3.5 28 13-40 101-128 (146)
24 1qzg_A Protection of telomeres 32.8 38 0.0013 29.2 3.8 36 5-46 92-128 (187)
25 4b3f_X DNA-binding protein smu 31.6 78 0.0027 30.4 6.2 35 8-45 74-110 (646)
26 2zzd_A Thiocyanate hydrolase s 30.2 42 0.0014 27.5 3.5 39 6-44 30-72 (126)
27 2gll_A FABZ, (3R)-hydroxymyris 29.7 42 0.0014 27.2 3.4 29 12-40 124-152 (171)
28 3p8d_A Medulloblastoma antigen 29.0 80 0.0027 23.1 4.5 44 10-65 4-47 (67)
29 4h4g_A (3R)-hydroxymyristoyl-[ 28.8 35 0.0012 27.6 2.9 28 12-39 110-137 (160)
30 1u1z_A (3R)-hydroxymyristoyl-[ 27.9 86 0.003 25.0 5.0 28 13-40 121-148 (168)
31 1zq1_A Glutamyl-tRNA(Gln) amid 27.4 68 0.0023 30.7 4.9 65 12-86 11-77 (438)
32 1y96_A Gemin6, SIP2, GEM-assoc 26.8 2.1E+02 0.0072 21.8 7.4 59 15-82 16-74 (86)
33 1ugp_B NitrIle hydratase beta 26.1 45 0.0015 29.4 3.2 39 6-44 132-174 (226)
34 3qyh_B CO-type nitrIle hydrata 26.0 50 0.0017 29.0 3.5 39 6-44 124-166 (219)
35 2kbn_A Conserved protein; nucl 24.0 51 0.0018 25.0 2.8 25 9-33 57-82 (109)
36 3frn_A Flagellar protein FLGA; 23.0 82 0.0028 28.7 4.4 53 8-65 205-257 (278)
37 3hht_B NitrIle hydratase beta 22.9 56 0.0019 28.9 3.2 38 7-44 136-177 (229)
38 2bm3_A Type 2 cohesin, scaffol 20.7 1.1E+02 0.0038 26.2 4.5 30 11-44 16-45 (166)
39 2p1g_A Putative xylanase; stru 20.1 3.1E+02 0.01 24.5 7.4 64 9-80 168-238 (249)
40 2cqn_A Formin-binding protein 20.0 90 0.0031 22.9 3.4 26 214-239 42-67 (77)
No 1
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=100.00 E-value=4.3e-44 Score=284.42 Aligned_cols=89 Identities=56% Similarity=1.013 Sum_probs=86.2
Q ss_pred CCCcCCCCEEEEEEEecCCCcccceEEEEEEEEecCCcCeeEEEEEeecceeEEEEEeecCCccceEEEeeeccccccce
Q psy12657 10 IPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDLYDPTIHNITVLRLEKRLDDDL 89 (260)
Q Consensus 10 iPeF~vGDiV~V~~~i~E~K~R~Q~F~GIVIarr~~Gl~sTFtLRnii~GvGVEr~FpLySP~I~sIeVlrrgKVRRAKL 89 (260)
+|+|+|||+|+|++.+.++++|+|.|+|+||+++|+|+++||||||+++|+|||++||||||.|++|+|+++||+|||||
T Consensus 1 iP~f~~GDtv~V~~~i~g~k~R~q~F~GvvI~~~~~G~~~tftvRki~~gvGVEr~fpl~SP~I~~IeV~r~gkvRRaKL 80 (98)
T 2ftc_K 1 IPEFYVGSILRVTTADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFELYNPRVQEIQVVKLEKRLDDSL 80 (98)
T ss_pred CCccCCCCEEEEEEEECCCceEeeeEEEEEEEEECCCCCcEEEEEEeccCceEEEEEecCCCceeEEEEEEcCcccceeE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ehhhccCcc
Q psy12657 90 LYLRDALPN 98 (260)
Q Consensus 90 YYLRdr~gK 98 (260)
||||++.++
T Consensus 81 yYLR~~~~~ 89 (98)
T 2ftc_K 81 LYLRDALPE 89 (98)
T ss_pred EEeccCCcc
Confidence 998877555
No 2
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=100.00 E-value=1.6e-40 Score=270.08 Aligned_cols=93 Identities=26% Similarity=0.420 Sum_probs=91.2
Q ss_pred cCCCCCCcCCCCEEEEEEEecC-CCcccceEEEEEEEEecCCcCeeEEEEEeecceeEEEEEeecCCccceEEEeeeccc
Q psy12657 6 SVIDIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDLYDPTIHNITVLRLEKR 84 (260)
Q Consensus 6 ~~~diPeF~vGDiV~V~~~i~E-~K~R~Q~F~GIVIarr~~Gl~sTFtLRnii~GvGVEr~FpLySP~I~sIeVlrrgKV 84 (260)
.+.|+|+|+|||||+|++.+.| +++|+|.|+|+||+++|+|+++||||||+++|+|||++||||||.|++|+|+++|++
T Consensus 12 ~~~~iP~f~~GDtv~V~~~i~EG~keRiQ~F~GvvI~~~~~G~~~tftvRki~~gvGVEr~fpl~SP~I~~IeV~r~gkv 91 (114)
T 3r8s_P 12 MKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSISVKRRGAV 91 (114)
T ss_dssp CCSCCCCCCTTCEEEEEEEEEETTEEEEEEEEEEEEEEECCGGGCEEEEEEEETTEEEEEEEETTCTTEEEEEEEECEEC
T ss_pred hccCCCccCCCCEEEEEEEEecCCceeeeeEEEEEEEEECCCCCeEEEEEEecCCccEEEEEecCCCccceEEEEEcccc
Confidence 4679999999999999999998 899999999999999999999999999999999999999999999999999999999
Q ss_pred cccceehhhccCcc
Q psy12657 85 LDDDLLYLRDALPN 98 (260)
Q Consensus 85 RRAKLYYLRdr~gK 98 (260)
|||||||||++.||
T Consensus 92 RRAKLyYLR~~~GK 105 (114)
T 3r8s_P 92 RKAKLYYLRERTGK 105 (114)
T ss_dssp CSSCCGGGTTCCHH
T ss_pred chhheeeecCCcch
Confidence 99999999999999
No 3
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=100.00 E-value=1.5e-39 Score=273.66 Aligned_cols=93 Identities=25% Similarity=0.457 Sum_probs=91.2
Q ss_pred cCCCCCCcCCCCEEEEEEEecC-CCcccceEEEEEEEEecCCcCeeEEEEEeecceeEEEEEeecCCccceEEEeeeccc
Q psy12657 6 SVIDIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDLYDPTIHNITVLRLEKR 84 (260)
Q Consensus 6 ~~~diPeF~vGDiV~V~~~i~E-~K~R~Q~F~GIVIarr~~Gl~sTFtLRnii~GvGVEr~FpLySP~I~sIeVlrrgKV 84 (260)
.+.|+|+|+|||||+|++.+.| +++|+|.|+|+||+++|+|+++||||||+++|+|||++||||||.|++|+|+++|+|
T Consensus 15 ~~~diP~F~~GDtV~V~~~i~EG~keRiQ~FeGvVI~rr~~Gl~~tFtVRkis~gvGVEr~Fpl~SP~I~~IeVvrrgkV 94 (146)
T 3v2d_T 15 VRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVERIFPLHSPLIQKIDIVQRGRA 94 (146)
T ss_dssp CCCCCCCCCTTCEEEEEEEEECSSCEEEEEEEEEEEEEECCGGGCEEEEEEEETTEEEEEEEETTCTTEEEEEEEECEEC
T ss_pred hhccCCCcCCCCEEEEEEEEccCCceeeeeEEEEEEEEECCCCCeEEEEEEecCCccEEEEEecCCCccceEEEEecCcc
Confidence 4679999999999999999998 899999999999999999999999999999999999999999999999999999999
Q ss_pred cccceehhhccCcc
Q psy12657 85 LDDDLLYLRDALPN 98 (260)
Q Consensus 85 RRAKLYYLRdr~gK 98 (260)
|||||||||++.||
T Consensus 95 RRAKLYYLR~~~GK 108 (146)
T 3v2d_T 95 RRAKLYFIRNLSDR 108 (146)
T ss_dssp SSSCCGGGGGCCHH
T ss_pred chhheeeccCCcch
Confidence 99999999999999
No 4
>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q
Probab=100.00 E-value=6.4e-40 Score=280.65 Aligned_cols=93 Identities=22% Similarity=0.418 Sum_probs=87.3
Q ss_pred cCCCCCCcCCCCEEEEEEEecC-CCcccceEEEEEEEEecCCcCeeEEEEEeecceeEEEEEeecCCccceEEEeeeccc
Q psy12657 6 SVIDIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDLYDPTIHNITVLRLEKR 84 (260)
Q Consensus 6 ~~~diPeF~vGDiV~V~~~i~E-~K~R~Q~F~GIVIarr~~Gl~sTFtLRnii~GvGVEr~FpLySP~I~sIeVlrrgKV 84 (260)
...++|+|+|||||+|++.+.| +++|+|.|+|+||+++|+|+++||||||+++|+|||++||||||.|++|+|+++|+|
T Consensus 20 ~~~diP~Fr~GDtV~V~vkI~EG~KeRiQ~FeGVVIarr~~Gl~sTFTVRkis~GvGVER~FplhSP~I~kIEVvrrGKV 99 (166)
T 2zjr_M 20 HTRQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGEGVERVFPFASPLVNQVTIVERGKV 99 (166)
T ss_dssp GCCCCCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGGGCEEEEEEEETTEEEEEEEETTCTTEEEEEEEECCCC
T ss_pred cccCCCCcCCCCEEEEEEEEecCCeeeecceEEEEEEEeCCCCCcEEEEEEecCCeeEEEEEecCCCccceEEEEecccc
Confidence 4589999999999999999998 899999999999999999999999999999999999999999999999999999999
Q ss_pred cccceehhhccCcc
Q psy12657 85 LDDDLLYLRDALPN 98 (260)
Q Consensus 85 RRAKLYYLRdr~gK 98 (260)
|||||||||++.||
T Consensus 100 RRAKLYYLRd~~GK 113 (166)
T 2zjr_M 100 RRAKLYYLRELRGK 113 (166)
T ss_dssp SSSCCGGGCC----
T ss_pred chhheeeccCCCCc
Confidence 99999999999999
No 5
>3bbo_R Ribosomal protein L19; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=3.1e-38 Score=281.22 Aligned_cols=94 Identities=27% Similarity=0.558 Sum_probs=91.8
Q ss_pred ccCCCCCCcCCCCEEEEEEEecCCCcccceEEEEEEEEecCCcCeeEEEEEeecceeEEEEEeecCCccceEEEeeeccc
Q psy12657 5 RSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDLYDPTIHNITVLRLEKR 84 (260)
Q Consensus 5 r~~~diPeF~vGDiV~V~~~i~E~K~R~Q~F~GIVIarr~~Gl~sTFtLRnii~GvGVEr~FpLySP~I~sIeVlrrgKV 84 (260)
..+.++|+|+|||||+|++.+.|+|+|+|.|+|+||+++|+|+++||||||+++|+|||++||||||.|++|+|+++|||
T Consensus 135 q~kkdiPeFr~GDtV~V~vkI~E~KeRiQ~FeGVVIarr~~Gl~sTFTVRkis~GvGVER~FpLhSP~I~kIEVvRrgKV 214 (233)
T 3bbo_R 135 EELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTTIRIRRIIAGVGVEIVFPLYSPNIKEIKVVSHRKV 214 (233)
T ss_dssp TCCSCCSSSCCCSCCCCCCCBCCCSSCCSCCBCCCCCSCBCCCSSSCBCBCCCCCSTTTCCCCCBSSSSSCCCCCCCSCC
T ss_pred hhccCCCccCCCCEEEEEEEeccCcceecceEEEEEEEeCCCCCceEEEEEecCCceEEEEEecCCCccceEEEEecccc
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceehhhccCcc
Q psy12657 85 LDDDLLYLRDALPN 98 (260)
Q Consensus 85 RRAKLYYLRdr~gK 98 (260)
|||||||||++.+.
T Consensus 215 RRAKLYYLRd~lp~ 228 (233)
T 3bbo_R 215 RKARLYYLRDKLPR 228 (233)
T ss_dssp CCSCSSCCCCSSTT
T ss_pred chhhhhhhhcCCcc
Confidence 99999999999999
No 6
>3bbo_R Ribosomal protein L19; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=98.92 E-value=1.2e-10 Score=104.25 Aligned_cols=49 Identities=39% Similarity=0.751 Sum_probs=47.8
Q ss_pred ccccccceeeEEeecCCCCcceeEEEeeeecccchhHhHhhCCCCCCcc
Q psy12657 98 NVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRDALPQYSTFP 146 (260)
Q Consensus 98 K~v~g~gv~iky~~y~p~i~~i~vl~lekrld~~l~ylrda~~~~~t~~ 146 (260)
|++.|.|||..|.+|+|.|.+|+|++..|..+..|.||||++|+||||+
T Consensus 185 kis~GvGVER~FpLhSP~I~kIEVvRrgKVRRAKLYYLRd~lp~~STf~ 233 (233)
T 3bbo_R 185 RIIAGVGVEIVFPLYSPNIKEIKVVSHRKVRKARLYYLRDKLPRLSTFK 233 (233)
T ss_dssp CCCCCSTTTCCCCCBSSSSSCCCCCCCSCCCCSCSSCCCCSSTTCSSCC
T ss_pred EecCCceEEEEEecCCCccceEEEEeccccchhhhhhhhcCCcccccCC
Confidence 5899999999999999999999999999999999999999999999996
No 7
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=98.26 E-value=2.4e-07 Score=73.65 Aligned_cols=53 Identities=57% Similarity=1.103 Sum_probs=51.6
Q ss_pred ccccccceeeEEeecCCCCcceeEEEeeeecccchhHhHhhCCCCCCccCCCc
Q psy12657 98 NVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRDALPQYSTFPFDME 150 (260)
Q Consensus 98 K~v~g~gv~iky~~y~p~i~~i~vl~lekrld~~l~ylrda~~~~~t~~~~m~ 150 (260)
+++.|.|+|..|.+|||.|.+|+|++..|..+..|.||||++|+||||||||+
T Consensus 46 ki~~gvGVEr~fpl~SP~I~~IeV~r~gkvRRaKLyYLR~~~~~~st~~~~~~ 98 (98)
T 2ftc_K 46 NVIEGQGVEICFELYNPRVQEIQVVKLEKRLDDSLLYLRDALPEYSTFDVNMK 98 (98)
T ss_pred EeccCceEEEEEecCCCceeEEEEEEcCcccceeEEEeccCCcccceeccccC
Confidence 47899999999999999999999999999999999999999999999999996
No 8
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=98.13 E-value=8.7e-07 Score=72.11 Aligned_cols=42 Identities=24% Similarity=0.440 Sum_probs=39.9
Q ss_pred ccccccceeeEEeecCCCCcceeEEEeeeecccchhHhHhhC
Q psy12657 98 NVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRDAL 139 (260)
Q Consensus 98 K~v~g~gv~iky~~y~p~i~~i~vl~lekrld~~l~ylrda~ 139 (260)
+++.|.|||..|.+|||.|.+|+|++..|..+..|.||||+.
T Consensus 62 ki~~gvGVEr~fpl~SP~I~~IeV~r~gkvRRAKLyYLR~~~ 103 (114)
T 3r8s_P 62 KISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRERT 103 (114)
T ss_dssp EEETTEEEEEEEETTCTTEEEEEEEECEECCSSCCGGGTTCC
T ss_pred EecCCccEEEEEecCCCccceEEEEEccccchhheeeecCCc
Confidence 478999999999999999999999999999999999999964
No 9
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=98.09 E-value=1.2e-06 Score=73.92 Aligned_cols=42 Identities=19% Similarity=0.423 Sum_probs=39.9
Q ss_pred ccccccceeeEEeecCCCCcceeEEEeeeecccchhHhHhhC
Q psy12657 98 NVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRDAL 139 (260)
Q Consensus 98 K~v~g~gv~iky~~y~p~i~~i~vl~lekrld~~l~ylrda~ 139 (260)
+++.|+|||..|.+|||.|.+|+|++..|..+..|.||||+.
T Consensus 65 kis~gvGVEr~Fpl~SP~I~~IeVvrrgkVRRAKLYYLR~~~ 106 (146)
T 3v2d_T 65 KVSYGVGVERIFPLHSPLIQKIDIVQRGRARRAKLYFIRNLS 106 (146)
T ss_dssp EEETTEEEEEEEETTCTTEEEEEEEECEECSSSCCGGGGGCC
T ss_pred EecCCccEEEEEecCCCccceEEEEecCccchhheeeccCCc
Confidence 478999999999999999999999999999999999999864
No 10
>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q
Probab=97.97 E-value=2.1e-06 Score=73.80 Aligned_cols=49 Identities=18% Similarity=0.329 Sum_probs=39.0
Q ss_pred ccccccceeeEEeecCCCCcceeEEEeeeecccchhHhHhhCCCCCCcc
Q psy12657 98 NVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRDALPQYSTFP 146 (260)
Q Consensus 98 K~v~g~gv~iky~~y~p~i~~i~vl~lekrld~~l~ylrda~~~~~t~~ 146 (260)
+++.|.|||..|.+|||.|.+|+|++..|..+..|.||||+...-+.+.
T Consensus 70 kis~GvGVER~FplhSP~I~kIEVvrrGKVRRAKLYYLRd~~GKaARIk 118 (166)
T 2zjr_M 70 KISFGEGVERVFPFASPLVNQVTIVERGKVRRAKLYYLRELRGKAARIK 118 (166)
T ss_dssp EEETTEEEEEEEETTCTTEEEEEEEECCCCSSSCCGGGCC---------
T ss_pred EecCCeeEEEEEecCCCccceEEEEeccccchhheeeccCCCCchhhee
Confidence 5799999999999999999999999999999999999999988766554
No 11
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=81.77 E-value=7.8 Score=30.00 Aligned_cols=57 Identities=19% Similarity=0.371 Sum_probs=41.9
Q ss_pred CCCCEEEEEEEecCCCcccceEEEEEEEEecCCcCeeEEEEEeecceeEEEEEeecCC-------ccceEEEeeec
Q psy12657 14 FVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDLYDP-------TIHNITVLRLE 82 (260)
Q Consensus 14 ~vGDiV~V~~~i~E~K~R~Q~F~GIVIarr~~Gl~sTFtLRnii~GvGVEr~FpLySP-------~I~sIeVlrrg 82 (260)
..|+.|.+.... -+-.|+|.+..+.. .++|+||+|++ ..|+ +.+|| -|++++|++..
T Consensus 7 ~iGs~VSi~c~d-----~lGvYQG~i~~vd~--~~~tItL~~~f-~NG~----~~~s~eVtls~~DI~~L~ii~~~ 70 (84)
T 2vc8_A 7 WLGSIVSINCGD-----SLGVYQGRVSAVDQ--VSQTISLTRPF-HNGV----KCLVPEVTFRAGDITELKILEIP 70 (84)
T ss_dssp TTTCEEEEECCT-----TTCEEEEEEEEEET--TTTEEEEEEEE-ETTE----ECSSSEEEEEGGGCSEEEEEECC
T ss_pred ccCCEEEEEECC-----CceEEEEEEEEecc--CCCeEEEehhh-hCCC----CCCCcEEEEEecChhheEEEecC
Confidence 478888887544 35689999999986 46899999996 4455 33433 58888888753
No 12
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=67.07 E-value=22 Score=28.40 Aligned_cols=58 Identities=16% Similarity=0.320 Sum_probs=42.5
Q ss_pred CCCCEEEEEEEecCCCcccceEEEEEEEEecCCcCeeEEEEEee-cce-----eEEEEEeecCCccceEEEeeec
Q psy12657 14 FVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVV-DNL-----GIEIAYDLYDPTIHNITVLRLE 82 (260)
Q Consensus 14 ~vGDiV~V~~~i~E~K~R~Q~F~GIVIarr~~Gl~sTFtLRnii-~Gv-----GVEr~FpLySP~I~sIeVlrrg 82 (260)
..|+.|.|+.... +-.|+|.|+++.. ++++|++.+ +|+ -.|.+|.- --|.+++++...
T Consensus 10 wiG~~VSI~C~d~-----LGVyQG~I~~V~~----~~ItL~kaFrNGiplk~~~~EVtLsa--~DI~~L~IIe~~ 73 (103)
T 2rm4_A 10 WIGCAVSIACDEV-----LGVFQGLIKQISA----EEITIVRAFRNGVPLRKQNAEVVLKC--TDIRSIDLIEPA 73 (103)
T ss_dssp GTTCEEEEEECTT-----TCEEEEEEEEEET----TEEEEEEEEETTEECSCSSSCEEEET--TTEEEEEEEECC
T ss_pred eeceEEEEeeCCc-----ceEeeEEEEEccc----ceeEEhhhhhcCcCcCCCCceEEEEe--cchhheeeeccc
Confidence 4799999987654 5689999999984 679999975 444 34766543 348888887643
No 13
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=66.23 E-value=6 Score=32.62 Aligned_cols=53 Identities=19% Similarity=0.222 Sum_probs=43.0
Q ss_pred CCCEEEEEEEecCCCcccceEEEEEEEEecCCcCeeEEE--EEeecceeEEEEEeecCCccceEEEeeec
Q psy12657 15 VGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVL--RNVVDNLGIEIAYDLYDPTIHNITVLRLE 82 (260)
Q Consensus 15 vGDiV~V~~~i~E~K~R~Q~F~GIVIarr~~Gl~sTFtL--Rnii~GvGVEr~FpLySP~I~sIeVlrrg 82 (260)
.|..|.|++.+. ..++|+|..+-+ .++|| +++..... .+-++.|..++|+...
T Consensus 11 lGy~V~v~LkDg------s~~qG~I~~vd~----k~LtL~~~~a~~s~~-----~I~asdI~DLkVl~~~ 65 (125)
T 4a53_A 11 YGSNVEVLLNND------SKARGVITNFDS----SNSILQLRLANDSTK-----SIVTKDIKDLRILPKN 65 (125)
T ss_dssp TTCEEEEEETTS------CEEEEEEEEEET----TTTEEEEEETTTEEE-----EEEGGGEEEEEECCSC
T ss_pred cCceEEEEECCC------CEeeEEEEeecC----CeeEEeccccccccc-----eeecccccceeeeecc
Confidence 589999999854 479999999975 44566 99866665 8889999999999864
No 14
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=53.98 E-value=13 Score=27.21 Aligned_cols=36 Identities=19% Similarity=0.134 Sum_probs=28.4
Q ss_pred cccceEEEEEEEEecCCcCeeEEEEEee-cceeEEEE
Q psy12657 30 NKTRKFVGICIQKRYCGLRHEFVLRNVV-DNLGIEIA 65 (260)
Q Consensus 30 ~R~Q~F~GIVIarr~~Gl~sTFtLRnii-~GvGVEr~ 65 (260)
.|.+.|.|.|.+.....-..++.+||-+ -|-+||..
T Consensus 3 ~~~~~fvG~V~~~~~~~g~~~ie~rN~f~~GD~iEi~ 39 (89)
T 4he6_A 3 KTTREFAGLVLGYDPETGIATVQQRNHFRPGDEVEFF 39 (89)
T ss_dssp CSGGGCSEEEEEEETTTTEEEEEESSCBCTTCEEEEE
T ss_pred ccccEEEEEEEEEeCCCCEEEEEEcCCcCCCCEEEEE
Confidence 4678999999998655335789999974 58899966
No 15
>3cnr_A Type IV fimbriae assembly protein; PILZ, xanthomonas citri, type IV pilus assembly, unknown function; HET: MSE; 1.90A {Xanthomonas axonopodis PV} PDB: 3dsg_A
Probab=49.52 E-value=38 Score=26.75 Aligned_cols=48 Identities=13% Similarity=0.248 Sum_probs=33.2
Q ss_pred CcCCCCEEEEEEEecCCCcccceEEEEEEEEecCCcCeeEEEEEeecceeEEEE
Q psy12657 12 SFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIA 65 (260)
Q Consensus 12 eF~vGDiV~V~~~i~E~K~R~Q~F~GIVIarr~~Gl~sTFtLRnii~GvGVEr~ 65 (260)
.+.+||.|.+.+...+..+++ .+.|.|+-++-.|-.. +.-.|+||+..
T Consensus 41 ~~~~G~~V~l~l~Lp~~~~~i-~~~GkVvWi~p~~~~~-----~~p~G~GVqF~ 88 (117)
T 3cnr_A 41 RYMLGDEVFLLLTLPDSSERL-PVAGKVIWTTPAGAQG-----NRAAGIGVQFP 88 (117)
T ss_dssp CCCTTCEEEEEEECTTCSCEE-EEEEEEEEEECC-----------CCEEEEECC
T ss_pred ccCCCCEEEEEEEcCCCCceE-EEEEEEEEecCCCCCC-----CCCCceEEEEe
Confidence 477999999999998754443 4679999998665432 34688999743
No 16
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=47.25 E-value=30 Score=23.46 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=21.9
Q ss_pred CcCCCCEEEEEEEecCCCcccceEEEEEEEEecC
Q psy12657 12 SFFVGSILSVTSADKHDPNKTRKFVGICIQKRYC 45 (260)
Q Consensus 12 eF~vGDiV~V~~~i~E~K~R~Q~F~GIVIarr~~ 45 (260)
.|.+||.|+|. ..-..-|+|.|..+...
T Consensus 4 ~~~~Gd~V~V~------~Gpf~g~~g~v~~v~~~ 31 (58)
T 1nz9_A 4 AFREGDQVRVV------SGPFADFTGTVTEINPE 31 (58)
T ss_dssp SCCTTCEEEEC------SGGGTTCEEEEEEEETT
T ss_pred ccCCCCEEEEe------ecCCCCcEEEEEEEcCC
Confidence 57899999886 34456799999999753
No 17
>4fm4_B NitrIle hydratase beta subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=43.37 E-value=18 Score=31.44 Aligned_cols=35 Identities=11% Similarity=0.145 Sum_probs=27.4
Q ss_pred CCCcCCCCEEEEEEEecCCCcccceE----EEEEEEEec
Q psy12657 10 IPSFFVGSILSVTSADKHDPNKTRKF----VGICIQKRY 44 (260)
Q Consensus 10 iPeF~vGDiV~V~~~i~E~K~R~Q~F----~GIVIarr~ 44 (260)
-|.|.+||.|+|.-..+..-+|+..| +|+|++.++
T Consensus 116 ~~~F~vGd~Vrv~~~~~~gHtRlP~Y~rg~~G~I~~~~g 154 (206)
T 4fm4_B 116 EGGFKLGQRVHVKNEFVPGHTRFPAYIRGKAGVVVGISP 154 (206)
T ss_dssp TTCCCTTCEEEECCCCCSSCCSSCGGGTTCEEEEEEECC
T ss_pred CCCCcCCCEEEeCCCCCCCcccccHhhcCCeeEEEEEec
Confidence 46799999999986666566776655 799998875
No 18
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.34 E-value=17 Score=25.40 Aligned_cols=28 Identities=14% Similarity=0.150 Sum_probs=22.0
Q ss_pred CCcCCCCEEEEEEEecCCCcccceEEEEEEEEec
Q psy12657 11 PSFFVGSILSVTSADKHDPNKTRKFVGICIQKRY 44 (260)
Q Consensus 11 PeF~vGDiV~V~~~i~E~K~R~Q~F~GIVIarr~ 44 (260)
..|.+||.|+|.- .=..-|.|+|..+.+
T Consensus 6 ~~f~~GD~V~V~~------Gpf~g~~G~V~evd~ 33 (59)
T 2e6z_A 6 SGFQPGDNVEVCE------GELINLQGKILSVDG 33 (59)
T ss_dssp SSCCTTSEEEECS------STTTTCEEEECCCBT
T ss_pred ccCCCCCEEEEee------cCCCCCEEEEEEEeC
Confidence 4689999999862 234569999999986
No 19
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=39.21 E-value=18 Score=34.98 Aligned_cols=44 Identities=20% Similarity=0.218 Sum_probs=34.1
Q ss_pred cCCCCCCc-CCCCEEEEEEEecCCCcccceEEEEEEEEecCCcCeeEEEEE
Q psy12657 6 SVIDIPSF-FVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRN 55 (260)
Q Consensus 6 ~~~diPeF-~vGDiV~V~~~i~E~K~R~Q~F~GIVIarr~~Gl~sTFtLRn 55 (260)
...++|.+ .+||||.++=. ++|.|.|-+.+.-+.+.+|+|.|=.
T Consensus 106 ~~e~LP~V~~~GDII~Lhrv------kIq~~ng~~~~v~~~~~~SswavF~ 150 (495)
T 1jb7_A 106 RFEDLPIIHRAGDIIRVHRA------TLRLYNGQRQFNANVFYSSSWALFS 150 (495)
T ss_dssp SGGGSCCCCEETCEEEEEEE------EEEEETTEEEEEEETTTTCEEEEEC
T ss_pred ChHHCCCCCCCCCEEEEEEE------EEEEECCcEEEEecCCCceEEEEEe
Confidence 35679999 79999999744 3567888888888888878887544
No 20
>3m4w_A Sigma-E factor regulatory protein RSEB; RSEA, RSEB, RSEP, stress response, sigma factor, periplasm, membrane, transmembrane; 2.30A {Escherichia coli} PDB: 2p4b_A 2v43_A 2v42_A
Probab=39.09 E-value=58 Score=29.20 Aligned_cols=50 Identities=12% Similarity=0.069 Sum_probs=38.5
Q ss_pred cccceEEEEEEEEecCCcCeeEEEEEeecceeEEEEEeecCCccceEEEeeec
Q psy12657 30 NKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDLYDPTIHNITVLRLE 82 (260)
Q Consensus 30 ~R~Q~F~GIVIarr~~Gl~sTFtLRnii~GvGVEr~FpLySP~I~sIeVlrrg 82 (260)
.+.++|+|..|..++.++.|.=...-+.+|.-.|+.-.|..|. -+|+|++
T Consensus 15 ~~~lnY~g~fV~~~~~~i~s~ri~H~~~~~~~~e~L~~LdG~~---reviR~~ 64 (295)
T 3m4w_A 15 SQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPR---REVVQRG 64 (295)
T ss_dssp HHHSEEEEEEEEEETTEEEEEEEEEEECSSSEEEEEEECSSSC---CEEEEET
T ss_pred HhhCCeEEEEEEEeCCeEEEEEEEEEeeCCEEEEEEEEcCCCc---EEEEEEC
Confidence 4678999999999988876655555667777799999999886 4566654
No 21
>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A
Probab=36.48 E-value=34 Score=27.49 Aligned_cols=50 Identities=12% Similarity=0.092 Sum_probs=32.1
Q ss_pred CCCCcCCCCEEEEEEEecCCCcccceEEEEEEEEe----cC-C-cCeeEEEEEeecceeEEEEEeec
Q psy12657 9 DIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKR----YC-G-LRHEFVLRNVVDNLGIEIAYDLY 69 (260)
Q Consensus 9 diPeF~vGDiV~V~~~i~E~K~R~Q~F~GIVIarr----~~-G-l~sTFtLRnii~GvGVEr~FpLy 69 (260)
..++|+.|++|.+. . +.+. |+... |+ | --..+.+||+..|.-+|.+|+-.
T Consensus 12 ~~~~lr~G~~I~~~----g-----~p~~--V~e~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~ 67 (136)
T 2eif_A 12 NVGSLKVGQYVMID----G-----VPCE--IVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTS 67 (136)
T ss_dssp EGGGCCTTSEEEET----T-----EEEE--EEEEEECCCCSSSCCEEEEEEEESSSCCEEEEEEETT
T ss_pred EHHHCcCCCEEEEC----C-----EEEE--EEEEEeecCCCCCceEEEEEEEEcCCCCeEEEEecCC
Confidence 35789999998662 1 1222 33322 22 2 12356799999999999998854
No 22
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=33.69 E-value=46 Score=26.45 Aligned_cols=48 Identities=10% Similarity=0.138 Sum_probs=31.9
Q ss_pred CCCcCCCCEEEEEEEecCCCcccceEEEEEEEEecCCcCeeEEEEEeecc--eeEEEE
Q psy12657 10 IPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDN--LGIEIA 65 (260)
Q Consensus 10 iPeF~vGDiV~V~~~i~E~K~R~Q~F~GIVIarr~~Gl~sTFtLRnii~G--vGVEr~ 65 (260)
-..|.+||.|+|. ..-..-|.|+|..+.+.. ...+|.=.+.| +.||.-
T Consensus 89 ~~~~~~Gd~VrI~------~Gpf~g~~g~V~~vd~~k--~~v~V~v~~~gr~tpvel~ 138 (152)
T 3p8b_B 89 VSGLEPGDLVEVI------AGPFKGQKAKVVKIDESK--DEVVVQFIDAIVPIPVTIK 138 (152)
T ss_dssp TTTCCTTCEEEEC------SSTTTTCEEEEEEEETTT--TEEEEEESSCSSCCEEEEE
T ss_pred cccCCCCCEEEEe------eecCCCCEEEEEEEeCCC--CEEEEEEEecceeEEEEEC
Confidence 3579999999986 234667999999998754 34444444444 345543
No 23
>3d6x_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; FABZ, hot DOG fold, dehydratase, lipid biosynthesis, lipid synthesis, lyase; HET: MSE; 2.59A {Campylobacter jejuni subsp}
Probab=33.04 E-value=36 Score=25.97 Aligned_cols=28 Identities=14% Similarity=0.103 Sum_probs=20.4
Q ss_pred cCCCCEEEEEEEecCCCcccceEEEEEE
Q psy12657 13 FFVGSILSVTSADKHDPNKTRKFVGICI 40 (260)
Q Consensus 13 F~vGDiV~V~~~i~E~K~R~Q~F~GIVI 40 (260)
+.|||++.++..+.+.+.+.-.|.|.+.
T Consensus 101 V~pGd~l~~~~~v~~~~~~~~~~~~~~~ 128 (146)
T 3d6x_A 101 VRPGDRLDYEMSVVKNRGNMWIFKGQAF 128 (146)
T ss_dssp CCTTCEEEEEEEEEEEETTEEEEEEEEE
T ss_pred cCCCCEEEEEEEEEEeeCCEEEEEEEEE
Confidence 5789999999988765455556666554
No 24
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=32.76 E-value=38 Score=29.18 Aligned_cols=36 Identities=17% Similarity=0.114 Sum_probs=26.2
Q ss_pred ccCCCCCCc-CCCCEEEEEEEecCCCcccceEEEEEEEEecCC
Q psy12657 5 RSVIDIPSF-FVGSILSVTSADKHDPNKTRKFVGICIQKRYCG 46 (260)
Q Consensus 5 r~~~diPeF-~vGDiV~V~~~i~E~K~R~Q~F~GIVIarr~~G 46 (260)
.....+|.+ .+||+|.++-. ++|.|.|-+.++-+.+
T Consensus 92 ~~~e~LP~V~~~GDIIlL~rv------kiq~~~g~~~~v~~~~ 128 (187)
T 1qzg_A 92 KQGNDLPVIKQVGQPLLLHQI------TLRSYRDRTQGLSKDQ 128 (187)
T ss_dssp SSSSCSCCCCSTTCEEEEEEE------EEEEETTEEEEEEEEE
T ss_pred CChhhCCCCCCCCCEEEEEEE------EEEEECCeEEEEEcCc
Confidence 445789998 99999999754 3466777777665544
No 25
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=31.61 E-value=78 Score=30.37 Aligned_cols=35 Identities=23% Similarity=0.308 Sum_probs=25.0
Q ss_pred CCCC--CcCCCCEEEEEEEecCCCcccceEEEEEEEEecC
Q psy12657 8 IDIP--SFFVGSILSVTSADKHDPNKTRKFVGICIQKRYC 45 (260)
Q Consensus 8 ~diP--eF~vGDiV~V~~~i~E~K~R~Q~F~GIVIarr~~ 45 (260)
..+| .|++||+|.|.-. +....+.+.|+|..+...
T Consensus 74 ~~l~~~~~~~Gd~v~~~~~---~~~~~~~~~g~v~~~~~~ 110 (646)
T 4b3f_X 74 AALPSNSFTSGDIVGLYDA---ANEGSQLATGILTRVTQK 110 (646)
T ss_dssp CCCCCCCCCTTCEEEEEET---TTTSCCCEEEEEEEEETT
T ss_pred CCCccCCCCCCCEEEEEec---CCCCCceEEEEEEEEeCC
Confidence 3456 6999999988633 233446789999998764
No 26
>2zzd_A Thiocyanate hydrolase subunit alpha; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_A 2dxb_A 2dd5_A* 2dxc_A*
Probab=30.20 E-value=42 Score=27.50 Aligned_cols=39 Identities=15% Similarity=0.245 Sum_probs=28.4
Q ss_pred cCCCCCCcCCCCEEEEEEEecCCCcccceE----EEEEEEEec
Q psy12657 6 SVIDIPSFFVGSILSVTSADKHDPNKTRKF----VGICIQKRY 44 (260)
Q Consensus 6 ~~~diPeF~vGDiV~V~~~i~E~K~R~Q~F----~GIVIarr~ 44 (260)
....-|.|.+||.|+|.-..+..=.|+..| .|+|.+..+
T Consensus 30 ~~~~~prF~vGDrVrvr~~~p~gHtRlP~YvRGk~G~I~~~~G 72 (126)
T 2zzd_A 30 GMAGKSKFNVGDRVRIKDLPDLFYTRTMTYTRGATGTIVRLVY 72 (126)
T ss_dssp TTTCSCSSCTTCEEEECCCCCSSCCSSCGGGTTCEEEEEEEEE
T ss_pred CCCCCCccCCCCEEEEccCCCCCceeccHHhCCCEEEEEEEec
Confidence 445578999999999986665566676665 677777664
No 27
>2gll_A FABZ, (3R)-hydroxymyristoyl-acyl carrier protein dehydratase; lyase; 2.20A {Helicobacter pylori} PDB: 2glm_A* 2glp_A* 2glv_A 3dp1_A* 3cf8_A* 3cf9_A* 3d04_A* 3doy_A* 3doz_A* 3dp0_A* 3b7j_A* 3dp2_A* 3dp3_A* 3ed0_A*
Probab=29.73 E-value=42 Score=27.19 Aligned_cols=29 Identities=10% Similarity=-0.032 Sum_probs=21.8
Q ss_pred CcCCCCEEEEEEEecCCCcccceEEEEEE
Q psy12657 12 SFFVGSILSVTSADKHDPNKTRKFVGICI 40 (260)
Q Consensus 12 eF~vGDiV~V~~~i~E~K~R~Q~F~GIVI 40 (260)
.+.|||+|.+++.+...+.++-.|.|.+.
T Consensus 124 pV~PGD~L~i~v~v~~~~~~~~~~~~~~~ 152 (171)
T 2gll_A 124 PVTPGDRLEYHLEVLKHKGMIWQVGGTAQ 152 (171)
T ss_dssp CCCTTCEEEEEEEEEEESSSEEEEEEEEE
T ss_pred ccCCCCEEEEEEEEEEEeCCEEEEEEEEE
Confidence 46799999999998775556666776665
No 28
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=29.03 E-value=80 Score=23.06 Aligned_cols=44 Identities=11% Similarity=0.160 Sum_probs=33.0
Q ss_pred CCCcCCCCEEEEEEEecCCCcccceEEEEEEEEecCCcCeeEEEEEeecceeEEEE
Q psy12657 10 IPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIA 65 (260)
Q Consensus 10 iPeF~vGDiV~V~~~i~E~K~R~Q~F~GIVIarr~~Gl~sTFtLRnii~GvGVEr~ 65 (260)
.|.|.+||.|.-...+ -+.|.|.|.++.+.+ +++|.= .+ |...+
T Consensus 4 ~~~~~vGd~vmArW~D------~~yYpA~I~si~~~~---~Y~V~F--~d-G~~et 47 (67)
T 3p8d_A 4 SSEFQINEQVLACWSD------CRFYPAKVTAVNKDG---TYTVKF--YD-GVVQT 47 (67)
T ss_dssp -CCCCTTCEEEEECTT------SCEEEEEEEEECTTS---EEEEEE--TT-SCEEE
T ss_pred CcccccCCEEEEEcCC------CCEeeEEEEEECCCC---eEEEEE--eC-CceEE
Confidence 5789999999999722 268999999999873 477654 55 66655
No 29
>4h4g_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Burkholderia thailandensis}
Probab=28.84 E-value=35 Score=27.63 Aligned_cols=28 Identities=14% Similarity=0.052 Sum_probs=20.7
Q ss_pred CcCCCCEEEEEEEecCCCcccceEEEEE
Q psy12657 12 SFFVGSILSVTSADKHDPNKTRKFVGIC 39 (260)
Q Consensus 12 eF~vGDiV~V~~~i~E~K~R~Q~F~GIV 39 (260)
.+.|||+|.+++.+...+..+-.|.|.+
T Consensus 110 ~V~PGd~L~i~v~~~~~~~~~~~~~~~~ 137 (160)
T 4h4g_A 110 VVEPGDQLILNVTFERYIRGIWKFKAVA 137 (160)
T ss_dssp CCCTTCEEEEEEEEEEEETTEEEEEEEE
T ss_pred ccCCCCEEEEEEEEEEeeCCEEEEEEEE
Confidence 3578999999998876555666666654
No 30
>1u1z_A (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase; fatty acid biosynthesis, hot DOG fold, lyase; 2.50A {Pseudomonas aeruginosa} SCOP: d.38.1.6
Probab=27.91 E-value=86 Score=25.01 Aligned_cols=28 Identities=14% Similarity=0.036 Sum_probs=19.0
Q ss_pred cCCCCEEEEEEEecCCCcccceEEEEEE
Q psy12657 13 FFVGSILSVTSADKHDPNKTRKFVGICI 40 (260)
Q Consensus 13 F~vGDiV~V~~~i~E~K~R~Q~F~GIVI 40 (260)
+.|||+|.+++.+.+.+...-.|.|.+.
T Consensus 121 V~pGD~L~~~v~v~~~~~g~~~~~~~~~ 148 (168)
T 1u1z_A 121 VLPGDQLQLHAKFISVKRSIWKFDCHAT 148 (168)
T ss_dssp CCTTCEEEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCCCEEEEEEEEEEEeCCEEEEEEEEE
Confidence 4589999999888764444445555443
No 31
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1
Probab=27.39 E-value=68 Score=30.68 Aligned_cols=65 Identities=18% Similarity=0.275 Sum_probs=41.7
Q ss_pred CcCCCCEEEEEEEecCCCcccceEEEEEEEEecCCcCeeEEEEEee--cceeEEEEEeecCCccceEEEeeeccccc
Q psy12657 12 SFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVV--DNLGIEIAYDLYDPTIHNITVLRLEKRLD 86 (260)
Q Consensus 12 eF~vGDiV~V~~~i~E~K~R~Q~F~GIVIarr~~Gl~sTFtLRnii--~GvGVEr~FpLySP~I~sIeVlrrgKVRR 86 (260)
.+.+||.|+|...... -...|+|++|-....+ +..+.+=+.- +++||.+- .|++|+++.++....
T Consensus 11 ~~~~gd~v~~~~~~~~---~~~~~~g~~~~~~~~~-~~~~~~~kl~~gyn~g~~~~------~~~~~~~~~~~~~~~ 77 (438)
T 1zq1_A 11 NINVGDFVRITKEEDG---EEVTYEGYIMPPYELS-AGDTLVLKLENGYNIGIALE------KIRRIEVLERAKVKP 77 (438)
T ss_dssp TCCTTCEEEEEEESSS---SEEECCEEECCCCTTC-CCSEEEEEETTSCEEEEEGG------GEEEEEEEECCCCCC
T ss_pred CCCCCCEEEEEECCCc---ceeEEEEEEecCcccC-CCCeEEEEccCCceeeechh------hcceEEEeccCCCCc
Confidence 4678999999876531 1247999999654433 3344444443 45677642 467889999875444
No 32
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=26.84 E-value=2.1e+02 Score=21.77 Aligned_cols=59 Identities=12% Similarity=0.243 Sum_probs=45.6
Q ss_pred CCCEEEEEEEecCCCcccceEEEEEEEEecCCcCeeEEEEEeecceeEEEEEeecCCccceEEEeeec
Q psy12657 15 VGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDLYDPTIHNITVLRLE 82 (260)
Q Consensus 15 vGDiV~V~~~i~E~K~R~Q~F~GIVIarr~~Gl~sTFtLRnii~GvGVEr~FpLySP~I~sIeVlrrg 82 (260)
+|=.|.|+..+. +.+.|++.+..-. +-++.|-|...|... -...+....|++|+|+...
T Consensus 16 i~KeV~V~l~dg------~~y~G~l~tvDp~--s~sIvL~n~~~~~~~-~~~iI~G~aI~eI~v~~~~ 74 (86)
T 1y96_A 16 IYKEVRVTASEK------NEYKGWVLTTDPV--SANIVLVNFLEDGSM-SVTGIMGHAVQTVETMNEG 74 (86)
T ss_dssp TTCEEEEEETTT------EEEEEEEEEECTT--TCCEEEEEECTTSCE-EEEEECGGGEEEEEEEECC
T ss_pred cCCEEEEEEcCC------CEEEEEEEEECCC--ceEEEEeecccCCeE-EEEEEecceEEEEEEecch
Confidence 566778877766 5799999999863 467888898666666 4446778899999999875
No 33
>1ugp_B NitrIle hydratase beta subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: b.34.4.4 PDB: 1ire_B 1ugq_B 1ugr_B 1ugs_B
Probab=26.06 E-value=45 Score=29.43 Aligned_cols=39 Identities=15% Similarity=0.347 Sum_probs=28.5
Q ss_pred cCCCCCCcCCCCEEEEEEEecCCCcccceE----EEEEEEEec
Q psy12657 6 SVIDIPSFFVGSILSVTSADKHDPNKTRKF----VGICIQKRY 44 (260)
Q Consensus 6 ~~~diPeF~vGDiV~V~~~i~E~K~R~Q~F----~GIVIarr~ 44 (260)
....-|.|.+||.|+|.-..+..-.|+..| +|+|.+..+
T Consensus 132 ~~~~~~~F~vGd~Vrv~~~~~~~HtR~P~Y~Rgk~G~I~~~~g 174 (226)
T 1ugp_B 132 EVDRPPKFKEGDVVRFSTASPKGHARRARYVRGKTGTVVKHHG 174 (226)
T ss_dssp CCSSCCSCCTTCEEEECCCCCSSCCCCCGGGTTCEEEEEEEEE
T ss_pred CCCCCCcCCCCCeEEEccCCCCCcccccHHhCCCeEEEEEEec
Confidence 344568999999999986665566676665 688877664
No 34
>3qyh_B CO-type nitrIle hydratase beta subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} SCOP: b.34.4.0 PDB: 3qxe_B 3qz5_B 3qyg_B 3qz9_B
Probab=25.97 E-value=50 Score=29.02 Aligned_cols=39 Identities=15% Similarity=0.209 Sum_probs=28.3
Q ss_pred cCCCCCCcCCCCEEEEEEEecCCCcccceE----EEEEEEEec
Q psy12657 6 SVIDIPSFFVGSILSVTSADKHDPNKTRKF----VGICIQKRY 44 (260)
Q Consensus 6 ~~~diPeF~vGDiV~V~~~i~E~K~R~Q~F----~GIVIarr~ 44 (260)
....-|.|.+||.|+|.-..+..-.|+..| +|+|.+..+
T Consensus 124 ~~~~~~~F~vGd~Vrv~~~~~~~HtR~P~Y~RG~~G~I~~~~g 166 (219)
T 3qyh_B 124 EEGARARFAVGDKVRVLNKNPVGHTRMPRYTRGKVGTVVIDHG 166 (219)
T ss_dssp SCCSCCCCCTTCEEEECCCCCSSCCCSCGGGTTCEEEEEEEEE
T ss_pred CCCCCCCCCCCCEEEECCCCCCCcccccHHHCCCeeEEEEEec
Confidence 344568999999999976665566676665 688877764
No 35
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=24.04 E-value=51 Score=25.05 Aligned_cols=25 Identities=8% Similarity=0.110 Sum_probs=17.7
Q ss_pred CCCCcCCCCEEEEE-EEecCCCcccc
Q psy12657 9 DIPSFFVGSILSVT-SADKHDPNKTR 33 (260)
Q Consensus 9 diPeF~vGDiV~V~-~~i~E~K~R~Q 33 (260)
+.+.|.+||+|+|. -++.+-+.+.|
T Consensus 57 ~~~~~~~G~~V~i~n~~v~~~~G~~~ 82 (109)
T 2kbn_A 57 ELPLLEQGESYLLRSVVVGEYNDRFQ 82 (109)
T ss_dssp CCCCCCTTCEEEEEEEEEEEETTEEE
T ss_pred cccccCCCCEEEEEEEEEEEECCEEE
Confidence 67899999999998 56655333333
No 36
>3frn_A Flagellar protein FLGA; structural genomics, periplasmic, PSI-2, protein structure initiative; 2.05A {Thermotoga maritima}
Probab=22.95 E-value=82 Score=28.71 Aligned_cols=53 Identities=13% Similarity=-0.051 Sum_probs=33.3
Q ss_pred CCCCCcCCCCEEEEEEEecCCCcccceEEEEEEEEecCCcCeeEEEEEeecceeEEEE
Q psy12657 8 IDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIA 65 (260)
Q Consensus 8 ~diPeF~vGDiV~V~~~i~E~K~R~Q~F~GIVIarr~~Gl~sTFtLRnii~GvGVEr~ 65 (260)
...+-++-||.|.|.+.... =....-..|..+.+.|.++.|||...|-=|.-+
T Consensus 205 ~~p~lVkrGq~V~Iva~~gG-----~~Ist~G~ALenGa~Gd~IRVrNl~SgkiV~G~ 257 (278)
T 3frn_A 205 KDPPDVVKGQVVPAYVDMGS-----IKVTTFVEVLENGYLGETVRAMNVESRKYVFGR 257 (278)
T ss_dssp ECCCSBCTTCEEEEEC------------CEEEEESSCBCTTCEEEEEC--CCCEEEEE
T ss_pred CcceEEeCCCEEEEEEEeCC-----EEEEEEEEEcccCCCCCEEEEEECCCCCEEEEE
Confidence 34567899999999887663 012233456677889999999998877666543
No 37
>3hht_B NitrIle hydratase beta subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: b.34.4.4 PDB: 2dpp_B 1v29_B
Probab=22.88 E-value=56 Score=28.92 Aligned_cols=38 Identities=13% Similarity=0.225 Sum_probs=27.6
Q ss_pred CCCCCCcCCCCEEEEEEEecCCCcccceE----EEEEEEEec
Q psy12657 7 VIDIPSFFVGSILSVTSADKHDPNKTRKF----VGICIQKRY 44 (260)
Q Consensus 7 ~~diPeF~vGDiV~V~~~i~E~K~R~Q~F----~GIVIarr~ 44 (260)
...-|.|.+||.|+|.-..+..-.|+..| +|+|.+..+
T Consensus 136 ~~~~~~F~vGd~Vrv~~~~~~~HtR~P~Y~RG~~G~I~~~~g 177 (229)
T 3hht_B 136 ISASPRFKVGERIKTKNIHPTGHTRFPRYARDKYGVIDEVYG 177 (229)
T ss_dssp CSSCCSCCTTCEEEECCCCCSSCCSCCGGGTTCEEEEEEEEE
T ss_pred CCCCCCCCCCCEEEECCCCCCCcccCcHHHCCCeeEEEEEec
Confidence 34568999999999976655566666655 688877754
No 38
>2bm3_A Type 2 cohesin, scaffolding dockerin binding protein A; cellulosome, nuclear protein; 1.8A {Clostridium thermocellum} SCOP: b.2.2.2
Probab=20.71 E-value=1.1e+02 Score=26.18 Aligned_cols=30 Identities=27% Similarity=0.283 Sum_probs=25.5
Q ss_pred CCcCCCCEEEEEEEecCCCcccceEEEEEEEEec
Q psy12657 11 PSFFVGSILSVTSADKHDPNKTRKFVGICIQKRY 44 (260)
Q Consensus 11 PeF~vGDiV~V~~~i~E~K~R~Q~F~GIVIarr~ 44 (260)
....+||||..++.+.. ++.|.|+=+.++-
T Consensus 16 T~~~VGdII~Atv~vnn----I~nfAGYQvNIKY 45 (166)
T 2bm3_A 16 NKGEVGDILIGTVRINN----IKNFAGFQVNIVY 45 (166)
T ss_dssp SCCCTTCEEEEEEEEES----CTTEEEEEEEEEC
T ss_pred cceeeCCEEEEEEEEcc----cccccceEEEEEE
Confidence 45689999999999986 5789999988874
No 39
>2p1g_A Putative xylanase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Bacteroides fragilis}
Probab=20.13 E-value=3.1e+02 Score=24.50 Aligned_cols=64 Identities=22% Similarity=0.323 Sum_probs=41.8
Q ss_pred CCCCcCCCCEEEEEEEecCCCcccceEEEEEEEEecCCcCeeEEEEEeeccee-EEEE-Eeec-----CCccceEEEee
Q psy12657 9 DIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLG-IEIA-YDLY-----DPTIHNITVLR 80 (260)
Q Consensus 9 diPeF~vGDiV~V~~~i~E~K~R~Q~F~GIVIarr~~Gl~sTFtLRnii~GvG-VEr~-FpLy-----SP~I~sIeVlr 80 (260)
.++.++.||+|.+...... =--+=.|++|...+ .+.+|+.+..-| |-.. .+|. .|....|-|+|
T Consensus 168 ~l~~l~~GDiI~i~t~~~G---LDVsHvGi~i~~~~-----~l~f~hASs~~~kVv~s~~~l~~Y~~~~~~~~GI~V~R 238 (249)
T 2p1g_A 168 GLPWIKNGDIIALTTNTPG---LDVSHMGIAIYIKG-----QLHLLHASSKEGKVVVGKTALSQMLKDRKSLTGIRVLR 238 (249)
T ss_dssp CCTTSCTTCEEEEEECSTT---CSEEEEEEEEEETT-----EEEEEEEETTTTEEEECSSCHHHHHHTCTTEEEEEEEE
T ss_pred HHhcCCCCCEEEEEeCCCC---CceeEEEEEEEECC-----eEEEEEcCCCCCeEEECCcCHHHHHhcCCCCccEEEEe
Confidence 3588999999999887543 11467899998742 688999987765 3221 1221 25555666665
No 40
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=20.02 E-value=90 Score=22.93 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=22.3
Q ss_pred hHHHhhcCChHHHHHHHHHHHHhhhh
Q psy12657 214 MKEYRRTIPEEEQEEIFSEVFSELHQ 239 (260)
Q Consensus 214 ~~~y~~~~~~e~~~~i~~e~~~~~~~ 239 (260)
...|+..-.|++++.||.|.-.+|.+
T Consensus 42 ~~~fkav~~E~eR~~lFeeYi~~Lke 67 (77)
T 2cqn_A 42 EPAFEDITLESERKRIFKDFMHVLEH 67 (77)
T ss_dssp SHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 35789888999999999999888765
Done!