RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12657
         (260 letters)



>d2zjrm1 b.34.5.6 (M:2-109) Ribosomal protein L19 {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 108

 Score = 69.0 bits (169), Expect = 9e-16
 Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 1/94 (1%)

Query: 2   IKRRSVIDIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNL 60
           I++     +P F  G  + V +  +  +  +++ F G+ I     G R  F +R +    
Sbjct: 15  IEQDHTRQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGE 74

Query: 61  GIEIAYDLYDPTIHNITVLRLEKRLDDDLLYLRD 94
           G+E  +    P ++ +T++   K     L YLR+
Sbjct: 75  GVERVFPFASPLVNQVTIVERGKVRRAKLYYLRE 108


>d2j01t1 b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus
           thermophilus [TaxId: 274]}
          Length = 138

 Score = 68.9 bits (168), Expect = 2e-15
 Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 1/87 (1%)

Query: 9   DIPSFFVGSILSVTSADKHDPN-KTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 67
           D+P F  G  + V+   K     + + F GI I+ R  G    F +R V   +G+E  + 
Sbjct: 18  DLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVERIFP 77

Query: 68  LYDPTIHNITVLRLEKRLDDDLLYLRD 94
           L+ P I  I +++  +     L ++R+
Sbjct: 78  LHSPLIQKIDIVQRGRARRAKLYFIRN 104


>d2gycn1 b.34.5.6 (N:1-114) Ribosomal protein L19 {Escherichia coli
           [TaxId: 562]}
          Length = 114

 Score = 63.3 bits (154), Expect = 1e-13
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 1/87 (1%)

Query: 9   DIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 67
           D+PSF  G  + V     +    + + F G+ I  R  GL   F +R + +  G+E  + 
Sbjct: 15  DVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQ 74

Query: 68  LYDPTIHNITVLRLEKRLDDDLLYLRD 94
            + P + +I+V R        L YLR+
Sbjct: 75  THSPVVDSISVKRRGAVRKAKLYYLRE 101


>d1gpua1 c.36.1.10 (A:3-337) Transketolase (TK), PP module {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 335

 Score = 28.5 bits (63), Expect = 0.76
 Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 2/41 (4%)

Query: 187 DDVDQHITEKMKGQKKKLEEPWEKYDLMKEYRRTIPEEEQE 227
            +V  H  + +     +    W K  L  EY++  PE   E
Sbjct: 289 QEVYDHYQKTILKPGVEANNKWNK--LFSEYQKKFPELGAE 327


>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating)
           subunit 1 {Thermus thermophilus [TaxId: 274]}
          Length = 437

 Score = 28.6 bits (63), Expect = 0.81
 Identities = 9/38 (23%), Positives = 21/38 (55%)

Query: 182 GYKGIDDVDQHITEKMKGQKKKLEEPWEKYDLMKEYRR 219
           G   ++D+  H+ +++      L EP  ++ +++E RR
Sbjct: 19  GAASLEDLFAHLPKEILSPPIDLPEPLPEWKVLEELRR 56


>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
           binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 108

 Score = 24.9 bits (54), Expect = 4.7
 Identities = 9/33 (27%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 201 KKKLEEPWEKYDL-MKEYRRTIPEEEQEEIFSE 232
            KK ++  + Y++ +  +  ++PEEEQ+ +  E
Sbjct: 64  HKKCDQKKKDYEVELLRFLESLPEEEQQRVLGE 96


>d1eysc_ a.138.1.2 (C:) Photosynthetic reaction centre (cytochrome
           subunit) {Thermochromatium tepidum [TaxId: 1050]}
          Length = 310

 Score = 25.6 bits (56), Expect = 6.9
 Identities = 6/26 (23%), Positives = 10/26 (38%)

Query: 139 LPQYSTFPFDMEPEYLLDGAPVPIND 164
              Y++ PFD    +L     + I  
Sbjct: 167 TVAYASLPFDPLTPFLDQANEIRITG 192


>d1ogpa2 d.176.1.1 (A:2-262) Sulfite oxidase, middle catalytic
           domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId:
           3702]}
          Length = 261

 Score = 25.5 bits (55), Expect = 7.7
 Identities = 18/118 (15%), Positives = 36/118 (30%), Gaps = 25/118 (21%)

Query: 81  LEKRLDDDLLYLRDALPNVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRDALP 140
           LE      L    +     V+ + ++   +           + L +  + +     D L 
Sbjct: 135 LELVGIPKLTASTNLGARHVEFVSVDRCKEENGGPYK--ASITLSQATNPE----ADVLL 188

Query: 141 QYSTFPFDMEPEYLLDGAP----VP----------INDIKVKLKPRPWVGRWERKGYK 184
            Y      +  ++   G P    VP          ++ I V  +     G + +K YK
Sbjct: 189 AYEMNGETLNRDH---GFPLRVVVPGVIGARSVKWLDSINVIAEESQ--GFFMQKDYK 241


>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 237

 Score = 25.1 bits (54), Expect = 9.5
 Identities = 13/62 (20%), Positives = 24/62 (38%)

Query: 191 QHITEKMKGQKKKLEEPWEKYDLMKEYRRTIPEEEQEEIFSEVFSELHQLSLSNKKLKKS 250
           + I   ++   KKLE     +D  K+ +  IP+EE  +   +          S   L + 
Sbjct: 142 REIQSALQHHLKKLEGRRLDFDYKKKRQGKIPDEELRQALEKFDESKEIAESSMFNLLEM 201

Query: 251 RV 252
            +
Sbjct: 202 DI 203


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.141    0.418 

Gapped
Lambda     K      H
   0.267   0.0654    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,073,878
Number of extensions: 56097
Number of successful extensions: 183
Number of sequences better than 10.0: 1
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 27
Length of query: 260
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 177
Effective length of database: 1,268,006
Effective search space: 224437062
Effective search space used: 224437062
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.0 bits)