BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12658
(67 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96QV6|H2A1A_HUMAN Histone H2A type 1-A OS=Homo sapiens GN=HIST1H2AA PE=1 SV=3
Length = 131
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 33/48 (68%)
Query: 11 LSTNGKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
+S GK+ KA+ KSRS RA L FPV R HR L+KG YAERIG GA
Sbjct: 1 MSGRGKQGGKARAKSKSRSSRAGLQFPVGRIHRLLRKGNYAERIGAGA 48
>sp|Q64522|H2A2B_MOUSE Histone H2A type 2-B OS=Mus musculus GN=Hist2h2ab PE=1 SV=3
Length = 130
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 33/48 (68%)
Query: 11 LSTNGKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
+S GK+ KA+ KSRS RA L FPV R HR L+KG YAER+G GA
Sbjct: 1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGA 48
>sp|P0CC09|H2A2A_RAT Histone H2A type 2-A OS=Rattus norvegicus GN=Hist2h2aa3 PE=1 SV=1
Length = 130
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 33/48 (68%)
Query: 11 LSTNGKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
+S GK+ KA+ KSRS RA L FPV R HR L+KG YAER+G GA
Sbjct: 1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGA 48
>sp|Q6GSS7|H2A2A_MOUSE Histone H2A type 2-A OS=Mus musculus GN=Hist2h2aa1 PE=1 SV=3
Length = 130
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 33/48 (68%)
Query: 11 LSTNGKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
+S GK+ KA+ KSRS RA L FPV R HR L+KG YAER+G GA
Sbjct: 1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGA 48
>sp|Q6FI13|H2A2A_HUMAN Histone H2A type 2-A OS=Homo sapiens GN=HIST2H2AA3 PE=1 SV=3
Length = 130
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 33/48 (68%)
Query: 11 LSTNGKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
+S GK+ KA+ KSRS RA L FPV R HR L+KG YAER+G GA
Sbjct: 1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGA 48
>sp|P0C169|H2A1C_RAT Histone H2A type 1-C OS=Rattus norvegicus PE=1 SV=2
Length = 130
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 33/48 (68%)
Query: 11 LSTNGKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
+S GK+ KA+ KSRS RA L FPV R HR L+KG YAER+G GA
Sbjct: 1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGA 48
>sp|Q93077|H2A1C_HUMAN Histone H2A type 1-C OS=Homo sapiens GN=HIST1H2AC PE=1 SV=3
Length = 130
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 33/48 (68%)
Query: 11 LSTNGKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
+S GK+ KA+ KSRS RA L FPV R HR L+KG YAER+G GA
Sbjct: 1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGA 48
>sp|P02262|H2A1_RAT Histone H2A type 1 OS=Rattus norvegicus PE=1 SV=2
Length = 130
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 33/48 (68%)
Query: 11 LSTNGKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
+S GK+ KA+ KSRS RA L FPV R HR L+KG YAER+G GA
Sbjct: 1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGA 48
>sp|Q64523|H2A2C_MOUSE Histone H2A type 2-C OS=Mus musculus GN=Hist2h2ac PE=1 SV=3
Length = 129
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 33/48 (68%)
Query: 11 LSTNGKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
+S GK+ KA+ KSRS RA L FPV R HR L+KG YAER+G GA
Sbjct: 1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGA 48
>sp|Q16777|H2A2C_HUMAN Histone H2A type 2-C OS=Homo sapiens GN=HIST2H2AC PE=1 SV=4
Length = 129
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 33/48 (68%)
Query: 11 LSTNGKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
+S GK+ KA+ KSRS RA L FPV R HR L+KG YAER+G GA
Sbjct: 1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGA 48
>sp|A1A4R1|H2A2C_BOVIN Histone H2A type 2-C OS=Bos taurus GN=HIST2H2AC PE=2 SV=1
Length = 129
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 33/48 (68%)
Query: 11 LSTNGKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
+S GK+ KA+ KSRS RA L FPV R HR L+KG YAER+G GA
Sbjct: 1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGA 48
>sp|Q8IUE6|H2A2B_HUMAN Histone H2A type 2-B OS=Homo sapiens GN=HIST2H2AB PE=1 SV=3
Length = 130
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 33/48 (68%)
Query: 11 LSTNGKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
+S GK+ KA+ KSRS RA L FPV R HR L+KG YAER+G GA
Sbjct: 1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGA 48
>sp|P02263|H2A4_CHICK Histone H2A-IV OS=Gallus gallus PE=1 SV=2
Length = 129
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 33/48 (68%)
Query: 11 LSTNGKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
+S GK+ KA+ KSRS RA L FPV R HR L+KG YAER+G GA
Sbjct: 1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGA 48
>sp|P13912|H2A_CAIMO Histone H2A OS=Cairina moschata PE=3 SV=2
Length = 129
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 33/48 (68%)
Query: 11 LSTNGKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
+S GK+ KA+ KSRS RA L FPV R HR L+KG YAER+G GA
Sbjct: 1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGA 48
>sp|P35062|H2A3_CHICK Histone H2A-III OS=Gallus gallus PE=1 SV=2
Length = 129
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 33/48 (68%)
Query: 11 LSTNGKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
+S GK+ KA+ KSRS RA L FPV R HR L+KG YAER+G GA
Sbjct: 1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGA 48
>sp|P16104|H2AX_HUMAN Histone H2A.x OS=Homo sapiens GN=H2AFX PE=1 SV=2
Length = 143
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 32/48 (66%)
Query: 11 LSTNGKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
+S GK KA+ KSRS RA L FPV R HR L+KG YAER+G GA
Sbjct: 1 MSGRGKTGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGHYAERVGAGA 48
>sp|P16886|H2AL_STRPU Late histone H2A.L3 OS=Strongylocentrotus purpuratus PE=1 SV=2
Length = 126
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 33/48 (68%)
Query: 11 LSTNGKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
+S GK KA+ KSRS RA L FPV R HRFL+KG YA+R+G GA
Sbjct: 1 MSGRGKGAGKARAKAKSRSARAGLQFPVGRVHRFLRKGNYAQRVGAGA 48
>sp|P27661|H2AX_MOUSE Histone H2A.x OS=Mus musculus GN=H2afx PE=1 SV=2
Length = 143
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 32/48 (66%)
Query: 11 LSTNGKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
+S GK KA+ KSRS RA L FPV R HR L+KG YAER+G GA
Sbjct: 1 MSGRGKTGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGHYAERVGAGA 48
>sp|P0C0S8|H2A1_HUMAN Histone H2A type 1 OS=Homo sapiens GN=HIST1H2AG PE=1 SV=2
Length = 130
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 33/48 (68%)
Query: 11 LSTNGKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
+S GK+ KA+ K+RS RA L FPV R HR L+KG YAER+G GA
Sbjct: 1 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGA 48
>sp|P0C0S9|H2A1_BOVIN Histone H2A type 1 OS=Bos taurus PE=1 SV=2
Length = 130
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 33/48 (68%)
Query: 11 LSTNGKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
+S GK+ KA+ K+RS RA L FPV R HR L+KG YAER+G GA
Sbjct: 1 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGA 48
>sp|P0C170|H2A1E_RAT Histone H2A type 1-E OS=Rattus norvegicus PE=1 SV=2
Length = 130
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 33/48 (68%)
Query: 11 LSTNGKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
+S GK+ KA+ K+RS RA L FPV R HR L+KG YAER+G GA
Sbjct: 1 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGA 48
>sp|Q99878|H2A1J_HUMAN Histone H2A type 1-J OS=Homo sapiens GN=HIST1H2AJ PE=1 SV=3
Length = 128
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 33/48 (68%)
Query: 11 LSTNGKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
+S GK+ KA+ K+RS RA L FPV R HR L+KG YAER+G GA
Sbjct: 1 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGA 48
>sp|Q96KK5|H2A1H_HUMAN Histone H2A type 1-H OS=Homo sapiens GN=HIST1H2AH PE=1 SV=3
Length = 128
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 33/48 (68%)
Query: 11 LSTNGKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
+S GK+ KA+ K+RS RA L FPV R HR L+KG YAER+G GA
Sbjct: 1 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGA 48
>sp|P02269|H2A_ASTRU Histone H2A OS=Asterias rubens PE=1 SV=2
Length = 125
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/39 (66%), Positives = 29/39 (74%)
Query: 20 KAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
KA+ KSRS RA L FPV R HRFL+KG YAER+G GA
Sbjct: 9 KARAKAKSRSSRAGLQFPVGRVHRFLRKGNYAERVGAGA 47
>sp|Q4FZT6|H2A3_RAT Histone H2A type 3 OS=Rattus norvegicus PE=2 SV=3
Length = 130
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 33/48 (68%)
Query: 11 LSTNGKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
+S GK+ KA+ KSRS RA L FPV R HR L+KG Y+ER+G GA
Sbjct: 1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYSERVGAGA 48
>sp|Q8BFU2|H2A3_MOUSE Histone H2A type 3 OS=Mus musculus GN=Hist3h2a PE=1 SV=3
Length = 130
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 33/48 (68%)
Query: 11 LSTNGKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
+S GK+ KA+ KSRS RA L FPV R HR L+KG Y+ER+G GA
Sbjct: 1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYSERVGAGA 48
>sp|Q7L7L0|H2A3_HUMAN Histone H2A type 3 OS=Homo sapiens GN=HIST3H2A PE=1 SV=3
Length = 130
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 33/48 (68%)
Query: 11 LSTNGKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
+S GK+ KA+ KSRS RA L FPV R HR L+KG Y+ER+G GA
Sbjct: 1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYSERVGAGA 48
>sp|P02264|H2A_ONCMY Histone H2A OS=Oncorhynchus mykiss PE=1 SV=2
Length = 128
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 32/48 (66%)
Query: 11 LSTNGKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
+S GK KA+ K+RS RA L FPV R HR L+KG YAER+G GA
Sbjct: 1 MSGRGKTGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGA 48
>sp|Q7ZUY3|H2AX_DANRE Histone H2A.x OS=Danio rerio GN=h2afx PE=2 SV=3
Length = 142
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 32/48 (66%)
Query: 11 LSTNGKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
+S GK KA+ K+RS RA L FPV R HR L+KG YAER+G GA
Sbjct: 1 MSGRGKTGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGA 48
>sp|P70082|H2AJ_CHICK Histone H2A.J OS=Gallus gallus GN=H2A-IX PE=3 SV=1
Length = 129
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 32/48 (66%)
Query: 11 LSTNGKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
+S GK+ K + KSRS RA L FPV R HR L+KG YAER+G GA
Sbjct: 1 MSGRGKQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGA 48
>sp|Q9BTM1|H2AJ_HUMAN Histone H2A.J OS=Homo sapiens GN=H2AFJ PE=1 SV=1
Length = 129
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 32/48 (66%)
Query: 11 LSTNGKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
+S GK+ K + KSRS RA L FPV R HR L+KG YAER+G GA
Sbjct: 1 MSGRGKQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGA 48
>sp|Q3ZBX9|H2AJ_BOVIN Histone H2A.J OS=Bos taurus GN=H2AFJ PE=2 SV=1
Length = 129
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 32/48 (66%)
Query: 11 LSTNGKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
+S GK+ K + KSRS RA L FPV R HR L+KG YAER+G GA
Sbjct: 1 MSGRGKQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGA 48
>sp|A9UMV8|H2AJ_RAT Histone H2A.J OS=Rattus norvegicus GN=H2afj PE=2 SV=1
Length = 129
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 32/48 (66%)
Query: 11 LSTNGKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
+S GK+ K + KSRS RA L FPV R HR L+KG YAER+G GA
Sbjct: 1 MSGRGKQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGA 48
>sp|Q8R1M2|H2AJ_MOUSE Histone H2A.J OS=Mus musculus GN=H2afj PE=2 SV=1
Length = 129
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 32/48 (66%)
Query: 11 LSTNGKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
+S GK+ K + KSRS RA L FPV R HR L+KG YAER+G GA
Sbjct: 1 MSGRGKQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGA 48
>sp|Q4R3X5|H2AJ_MACFA Histone H2A.J OS=Macaca fascicularis GN=H2AFJ PE=2 SV=1
Length = 129
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 32/48 (66%)
Query: 11 LSTNGKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
+S GK+ K + KSRS RA L FPV R HR L+KG YAER+G GA
Sbjct: 1 MSGRGKQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGA 48
>sp|P20671|H2A1D_HUMAN Histone H2A type 1-D OS=Homo sapiens GN=HIST1H2AD PE=1 SV=2
Length = 130
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 33/48 (68%)
Query: 11 LSTNGKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
+S GK+ KA+ K+RS RA L FPV R HR L+KG Y+ER+G GA
Sbjct: 1 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGA 48
>sp|P22752|H2A1_MOUSE Histone H2A type 1 OS=Mus musculus GN=Hist1h2ab PE=1 SV=3
Length = 130
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 33/48 (68%)
Query: 11 LSTNGKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
+S GK+ KA+ K+RS RA L FPV R HR L+KG Y+ER+G GA
Sbjct: 1 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGA 48
>sp|P04908|H2A1B_HUMAN Histone H2A type 1-B/E OS=Homo sapiens GN=HIST1H2AB PE=1 SV=2
Length = 130
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 33/48 (68%)
Query: 11 LSTNGKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
+S GK+ KA+ K+RS RA L FPV R HR L+KG Y+ER+G GA
Sbjct: 1 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGA 48
>sp|Q8CGP7|H2A1K_MOUSE Histone H2A type 1-K OS=Mus musculus GN=Hist1h2ak PE=1 SV=3
Length = 130
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 33/48 (68%)
Query: 11 LSTNGKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
+S GK+ KA+ K+RS RA L FPV R HR L+KG Y+ER+G GA
Sbjct: 1 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGA 48
>sp|Q8CGP6|H2A1H_MOUSE Histone H2A type 1-H OS=Mus musculus GN=Hist1h2ah PE=1 SV=3
Length = 128
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 33/48 (68%)
Query: 11 LSTNGKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
+S GK+ KA+ K+RS RA L FPV R HR L+KG Y+ER+G GA
Sbjct: 1 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGA 48
>sp|P06897|H2A1_XENLA Histone H2A type 1 OS=Xenopus laevis PE=1 SV=2
Length = 130
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 32/48 (66%)
Query: 11 LSTNGKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
+S GK+ K + K+RS RA L FPV R HR L+KG YAER+G GA
Sbjct: 1 MSGRGKQGGKTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGA 48
>sp|Q8CGP5|H2A1F_MOUSE Histone H2A type 1-F OS=Mus musculus GN=Hist1h2af PE=1 SV=3
Length = 130
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 33/48 (68%)
Query: 11 LSTNGKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
+S GK+ KA+ K+RS RA L FPV R HR L+KG Y+ER+G GA
Sbjct: 1 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGA 48
>sp|Q64598|H2A1F_RAT Histone H2A type 1-F OS=Rattus norvegicus PE=3 SV=3
Length = 130
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 33/48 (68%)
Query: 11 LSTNGKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
+S GK+ KA+ K+RS RA L FPV R HR L+KG Y+ER+G GA
Sbjct: 1 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGA 48
>sp|P06898|H2A2_XENLA Histone H2A type 2 OS=Xenopus laevis PE=3 SV=3
Length = 130
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 32/48 (66%)
Query: 11 LSTNGKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
+S GK+ K + K+RS RA L FPV R HR L+KG YAER+G GA
Sbjct: 1 MSGRGKQGGKTRAKSKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGA 48
>sp|Q74ZL4|H2A1_ASHGO Histone H2A.1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51
/ FGSC 9923 / NRRL Y-1056) GN=HTA1 PE=3 SV=3
Length = 131
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 32/48 (66%)
Query: 11 LSTNGKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
+S G + A KA +SRS +A L FPV R HR L+KG YA+RIG GA
Sbjct: 1 MSGKGGKAGSAAKASQSRSAKAGLTFPVGRVHRLLRKGNYAQRIGSGA 48
>sp|P59890|H2A_HIPHI Histone H2A (Fragment) OS=Hippoglossus hippoglossus PE=1 SV=2
Length = 52
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 31/48 (64%)
Query: 11 LSTNGKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
+S GK KA+ K+RS RA L FPV R HR L+KG YA R+G GA
Sbjct: 1 MSGRGKTGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAHRVGAGA 48
>sp|Q757L4|H2A2_ASHGO Histone H2A.2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51
/ FGSC 9923 / NRRL Y-1056) GN=HTA2 PE=3 SV=3
Length = 131
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 32/48 (66%)
Query: 11 LSTNGKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
+S G + A KA +SRS +A L FPV R HR L+KG YA+RIG GA
Sbjct: 1 MSGKGGKAGSAAKASQSRSAKAGLTFPVGRVHRLLRKGNYAQRIGSGA 48
>sp|Q6CK59|H2A_KLULA Histone H2A OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359
/ DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=HTA1
PE=3 SV=3
Length = 130
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 32/48 (66%)
Query: 11 LSTNGKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
+S G + A KA +SRS +A L FPV R HR L+KG YA+RIG GA
Sbjct: 1 MSGKGGKAGSAAKASQSRSAKAGLTFPVGRVHRLLRKGNYAQRIGSGA 48
>sp|P13630|H2A_PARLI Histone H2A OS=Paracentrotus lividus PE=3 SV=2
Length = 124
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 29/39 (74%)
Query: 20 KAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
KA+ KSRS RA L FPV R HRFL+KG YA+R+G GA
Sbjct: 9 KARTKAKSRSSRAGLQFPVGRVHRFLRKGNYAKRVGGGA 47
>sp|P04735|H2A1_PSAMI Late histone H2A.1 OS=Psammechinus miliaris PE=2 SV=2
Length = 125
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 11 LSTNGKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
+S GK + K K+ K+RS RA L FPV R HRFLKKG Y R+G GA
Sbjct: 1 MSGRGKGKAKGTKS-KTRSSRAGLQFPVGRVHRFLKKGNYGSRVGAGA 47
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,285,265
Number of Sequences: 539616
Number of extensions: 656663
Number of successful extensions: 1576
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1345
Number of HSP's gapped (non-prelim): 243
length of query: 67
length of database: 191,569,459
effective HSP length: 39
effective length of query: 28
effective length of database: 170,524,435
effective search space: 4774684180
effective search space used: 4774684180
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)