Query psy12658
Match_columns 67
No_of_seqs 100 out of 455
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 16:12:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12658.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12658hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f8n_K Histone H2A type 1; nuc 99.8 1.7E-22 5.7E-27 137.2 -2.4 58 7-64 16-73 (149)
2 1tzy_A Histone H2A-IV; histone 99.8 1.6E-22 5.5E-27 134.0 -3.0 54 11-64 1-54 (129)
3 2f8n_G Core histone macro-H2A. 99.8 6.1E-22 2.1E-26 129.8 -3.6 51 11-64 1-51 (120)
4 2nqb_C Histone H2A; nucleosome 99.8 2.3E-21 7.8E-26 127.5 -3.1 52 12-64 1-52 (123)
5 1f66_C Histone H2A.Z; nucleoso 99.8 8.7E-21 3E-25 125.5 -2.4 54 11-64 1-57 (128)
6 1id3_C Histone H2A.1; nucleoso 99.8 3.8E-20 1.3E-24 122.8 -0.8 46 19-64 9-54 (131)
7 2jss_A Chimera of histone H2B. 99.5 9.3E-16 3.2E-20 105.8 -1.4 42 23-64 93-135 (192)
8 3ksy_A SOS-1, SON of sevenless 99.4 4.6E-15 1.6E-19 120.0 -3.9 42 22-64 91-132 (1049)
9 1jfi_A Transcription regulator 98.9 9.2E-11 3.2E-15 73.6 -0.8 37 28-64 4-40 (98)
10 2yfw_B Histone H4, H4; cell cy 98.1 2.1E-07 7.2E-12 58.6 -1.4 51 11-64 1-57 (103)
11 1tzy_D Histone H4-VI; histone- 98.1 2.9E-07 1E-11 57.9 -0.9 51 11-64 1-57 (103)
12 1n1j_B NF-YC; histone-like PAI 98.0 3.9E-07 1.3E-11 56.7 -1.5 34 31-64 15-48 (97)
13 2byk_A Chrac-16; nucleosome sl 97.9 5.3E-07 1.8E-11 60.0 -1.7 42 23-64 7-48 (140)
14 4g92_C HAPE; transcription fac 97.7 1.9E-06 6.4E-11 55.6 -1.9 31 34-64 40-70 (119)
15 1f1e_A Histone fold protein; a 96.2 0.00025 8.5E-09 47.9 -2.4 33 30-63 77-109 (154)
16 1b67_A Protein (histone HMFA); 73.1 0.18 6.1E-06 28.5 -2.6 27 35-62 2-28 (68)
17 1ku5_A HPHA, archaeal histon; 59.1 0.5 1.7E-05 26.9 -2.6 27 35-62 6-32 (70)
18 2byk_B Chrac-14; nucleosome sl 45.3 1.3 4.5E-05 28.4 -2.5 30 33-62 7-37 (128)
19 1n1j_A NF-YB; histone-like PAI 40.8 1.7 5.8E-05 25.9 -2.4 30 33-62 6-36 (93)
20 3b0c_W CENP-W, centromere prot 29.2 4 0.00014 23.5 -2.0 27 35-61 4-30 (76)
21 1id3_B Histone H4; nucleosome 20.2 22 0.00075 21.7 0.0 31 25-58 20-50 (102)
No 1
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=99.82 E-value=1.7e-22 Score=137.19 Aligned_cols=58 Identities=45% Similarity=0.658 Sum_probs=39.4
Q ss_pred cccccccCCcccccccCCCccccccceeeeehhhhhhhccCCCccceeccCCceeeee
Q psy12658 7 AVHGLSTNGKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGAWSINGI 64 (67)
Q Consensus 7 ~~~~msg~gk~~~k~k~k~~SrS~rAgLqFPVgRv~r~Lr~g~ya~Rvga~ApVYlaa 64 (67)
+...|||+|++.++.+++.+|+|+||||||||+||+|+|++++|++||+++|||||||
T Consensus 16 ~~~~~~~~~~~~~~~~~k~~srS~ragLqFPVgrI~R~LK~~~~a~RVs~~A~VyLAA 73 (149)
T 2f8n_K 16 PRGSMSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAA 73 (149)
T ss_dssp ------------------CCCHHHHHTCSSCHHHHHHHHHHTTSCSEECTTHHHHHHH
T ss_pred cccccccCCCCCCCCCCCCCCccccCCeeccHHHHHHHHHccccccccCcCcHHHHHH
Confidence 3567998887656777889999999999999999999999999999999999999997
No 2
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=99.82 E-value=1.6e-22 Score=133.98 Aligned_cols=54 Identities=52% Similarity=0.735 Sum_probs=40.2
Q ss_pred cccCCcccccccCCCccccccceeeeehhhhhhhccCCCccceeccCCceeeee
Q psy12658 11 LSTNGKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGAWSINGI 64 (67)
Q Consensus 11 msg~gk~~~k~k~k~~SrS~rAgLqFPVgRv~r~Lr~g~ya~Rvga~ApVYlaa 64 (67)
|||+|+.+++.+++.+|+|+||||||||+||||+|++++|++||+++|||||||
T Consensus 1 m~~~~~~~~~~~~~~~srS~ragLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaA 54 (129)
T 1tzy_A 1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAA 54 (129)
T ss_dssp -------------CCCCHHHHHTCSSCHHHHHHHHHHTTSSSEECTHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCccccCceeccHHHHHHHHHccccccccchhhHHHHHH
Confidence 888776456677788999999999999999999999999999999999999987
No 3
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=99.80 E-value=6.1e-22 Score=129.77 Aligned_cols=51 Identities=41% Similarity=0.599 Sum_probs=40.8
Q ss_pred cccCCcccccccCCCccccccceeeeehhhhhhhccCCCccceeccCCceeeee
Q psy12658 11 LSTNGKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGAWSINGI 64 (67)
Q Consensus 11 msg~gk~~~k~k~k~~SrS~rAgLqFPVgRv~r~Lr~g~ya~Rvga~ApVYlaa 64 (67)
|||+| ++.+++++|+|+||||||||+||||+|++++|++||+++|||||||
T Consensus 1 m~~~~---~~~~~~~~srs~ragLqfPV~ri~R~Lk~~~~a~RV~~~A~VyLaA 51 (120)
T 2f8n_G 1 MSSRG---GKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAA 51 (120)
T ss_dssp ------------CCCCCHHHHHTCSSCHHHHHHHHHHHSSSCEECTHHHHHHHH
T ss_pred CCCCC---CCCCcCCcCcccccCccCChHHHHHHHHcCccccccccchHHHHHH
Confidence 78654 4566778999999999999999999999999999999999999987
No 4
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=99.78 E-value=2.3e-21 Score=127.47 Aligned_cols=52 Identities=54% Similarity=0.716 Sum_probs=39.3
Q ss_pred ccCCcccccccCCCccccccceeeeehhhhhhhccCCCccceeccCCceeeee
Q psy12658 12 STNGKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGAWSINGI 64 (67)
Q Consensus 12 sg~gk~~~k~k~k~~SrS~rAgLqFPVgRv~r~Lr~g~ya~Rvga~ApVYlaa 64 (67)
||+||+ ++.+++++|+|+||||||||+||||+|++++|++||+++|||||||
T Consensus 1 ~~~~~~-~~~~~~~~s~s~ragL~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaA 52 (123)
T 2nqb_C 1 SGRGKG-GKVKGKAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAA 52 (123)
T ss_dssp -------------CCCHHHHHTCSSCHHHHHHHHHHTTSCSEECTHHHHHHHH
T ss_pred CCCCCC-CCCCCCCCCccccCCeeccHHHHHHHHHccccccccchhhHHHHHH
Confidence 455663 4567788999999999999999999999999999999999999997
No 5
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=99.77 E-value=8.7e-21 Score=125.50 Aligned_cols=54 Identities=43% Similarity=0.546 Sum_probs=38.6
Q ss_pred cccC--CcccccccCCCccccccceeeeehhhhhhhccCCCccc-eeccCCceeeee
Q psy12658 11 LSTN--GKEQIKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAE-RIGLGAWSINGI 64 (67)
Q Consensus 11 msg~--gk~~~k~k~k~~SrS~rAgLqFPVgRv~r~Lr~g~ya~-Rvga~ApVYlaa 64 (67)
|||. |++.++.+++.+|+|+||||||||+||||+|++++|++ ||+++|||||||
T Consensus 1 m~~~~~~~~~~~~~~~~~srS~ragLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaA 57 (128)
T 1f66_C 1 MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAA 57 (128)
T ss_dssp ----------------CCCHHHHHTCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHH
T ss_pred CCCCCCCCCCCCcCCCCcCccccCCccCChHHHHHHHHHcccchhhccccHHHHHHH
Confidence 5643 33344566778999999999999999999999999984 999999999997
No 6
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.75 E-value=3.8e-20 Score=122.83 Aligned_cols=46 Identities=50% Similarity=0.711 Sum_probs=38.5
Q ss_pred ccccCCCccccccceeeeehhhhhhhccCCCccceeccCCceeeee
Q psy12658 19 IKAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGAWSINGI 64 (67)
Q Consensus 19 ~k~k~k~~SrS~rAgLqFPVgRv~r~Lr~g~ya~Rvga~ApVYlaa 64 (67)
++.+++.+|+|+||||||||+||||+|++++|++||+++|||||||
T Consensus 9 ~~~~~~~~srS~ragLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaA 54 (131)
T 1id3_C 9 GSAAKASQSRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTA 54 (131)
T ss_dssp -------CCTTGGGTCSSCHHHHHHHHHTTCSCSEECSSHHHHHHH
T ss_pred CCCCCCCCCccccCCeecCHHHHHHHHHccccccccchhhHHHHHH
Confidence 4456678999999999999999999999999999999999999997
No 7
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=99.50 E-value=9.3e-16 Score=105.82 Aligned_cols=42 Identities=36% Similarity=0.454 Sum_probs=39.3
Q ss_pred CCCccccccceeeeehhhhhhhccCCCcc-ceeccCCceeeee
Q psy12658 23 KAPKSRSQRANLVFPVSRCHRFLKKGRYA-ERIGLGAWSINGI 64 (67)
Q Consensus 23 ~k~~SrS~rAgLqFPVgRv~r~Lr~g~ya-~Rvga~ApVYlaa 64 (67)
++.+|+|+||||||||+||||+|++++|+ +||+++|||||||
T Consensus 93 k~~~s~s~ragl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaa 135 (192)
T 2jss_A 93 TQAQSSSARAGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTA 135 (192)
T ss_dssp CSSSCHHHHSSCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHH
T ss_pred cccccccccCCCcCCHHHHHHHHHhcCccccccccChHHHHHH
Confidence 35779999999999999999999999998 6999999999987
No 8
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=99.40 E-value=4.6e-15 Score=120.02 Aligned_cols=42 Identities=24% Similarity=0.253 Sum_probs=38.9
Q ss_pred cCCCccccccceeeeehhhhhhhccCCCccceeccCCceeeee
Q psy12658 22 KKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGAWSINGI 64 (67)
Q Consensus 22 k~k~~SrS~rAgLqFPVgRv~r~Lr~g~ya~Rvga~ApVYlaa 64 (67)
+.+..|+|+|||||||||||||+| +|+|++|||++|||||||
T Consensus 91 ~~~~~~~~~~~~l~~pv~~~~~~l-~~~~~~r~~~~~~~y~~a 132 (1049)
T 3ksy_A 91 QSAIEKRKRRNPLSLPVEKIHPLL-KEVLGYKIDHQVSVYIVA 132 (1049)
T ss_dssp HHHHTTCCCSSSCSSCHHHHHHHH-HHHHCSCCCHHHHHHHHH
T ss_pred HHhhhcccccCCccccHHHHHHHh-hcccccccCCCCcchhHH
Confidence 344579999999999999999999 999999999999999998
No 9
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=98.91 E-value=9.2e-11 Score=73.64 Aligned_cols=37 Identities=14% Similarity=0.242 Sum_probs=30.0
Q ss_pred ccccceeeeehhhhhhhccCCCccceeccCCceeeee
Q psy12658 28 RSQRANLVFPVSRCHRFLKKGRYAERIGLGAWSINGI 64 (67)
Q Consensus 28 rS~rAgLqFPVgRv~r~Lr~g~ya~Rvga~ApVYlaa 64 (67)
.+.+++++|||+||+|.|+.+.+..||+++||||+++
T Consensus 4 ~~kk~~~~fPvaRIkrimK~~~~~~~vs~~A~v~la~ 40 (98)
T 1jfi_A 4 KKKKYNARFPPARIKKIMQTDEEIGKVAAAVPVIISR 40 (98)
T ss_dssp ------CCCCHHHHHHHHTTSTTCCCBCTTHHHHHHH
T ss_pred cccccCCCCChHHHHHHHHcCccccccchHHHHHHHH
Confidence 5678999999999999999999999999999999975
No 10
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=98.09 E-value=2.1e-07 Score=58.64 Aligned_cols=51 Identities=16% Similarity=0.121 Sum_probs=25.7
Q ss_pred cccCCccc-----cc-ccCCCccccccceeeeehhhhhhhccCCCccceeccCCceeeee
Q psy12658 11 LSTNGKEQ-----IK-AKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGAWSINGI 64 (67)
Q Consensus 11 msg~gk~~-----~k-~k~k~~SrS~rAgLqFPVgRv~r~Lr~g~ya~Rvga~ApVYlaa 64 (67)
|||+||++ ++ ++.+..++++.++ ||+..|+|+++.+.+ +||+..++++|+.
T Consensus 1 m~~~gk~gkg~~~~~~kr~~~~~r~~~~g--ip~~~I~Rlar~~G~-~rIs~~a~~~l~~ 57 (103)
T 2yfw_B 1 MSGRGKGGKGLGKGGAKRHRKILRDNIQG--ITKPAIRRLARRGGV-KRISGLIYEEVRN 57 (103)
T ss_dssp -------------------------------CCHHHHHHHHHHTTC-CEECTTHHHHHHH
T ss_pred CCCCCCCCCCCCCCCccchhhhhhhhhcc--CCHHHHHHHHHHcCc-cccCHHHHHHHHH
Confidence 67665432 11 2344567999999 999999999999988 8999999998864
No 11
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=98.08 E-value=2.9e-07 Score=57.89 Aligned_cols=51 Identities=16% Similarity=0.130 Sum_probs=33.4
Q ss_pred cccCCccc-----cc-ccCCCccccccceeeeehhhhhhhccCCCccceeccCCceeeee
Q psy12658 11 LSTNGKEQ-----IK-AKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGAWSINGI 64 (67)
Q Consensus 11 msg~gk~~-----~k-~k~k~~SrS~rAgLqFPVgRv~r~Lr~g~ya~Rvga~ApVYlaa 64 (67)
|||+||++ ++ ++.+..++++..+ ||+..|+|+++.+.+ +||+..++++|+.
T Consensus 1 m~g~gk~~kg~~~~~~kr~~k~~r~~~~g--ip~~~I~Rlar~~G~-~rIs~~a~~~l~~ 57 (103)
T 1tzy_D 1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQG--ITKPAIRRLARRGGV-KRISGLIYEETRG 57 (103)
T ss_dssp --------------------CCCCCGGGG--SCHHHHHHHHHHTTC-CEECTTHHHHHHH
T ss_pred CCCCCCCCCCCCCCCccccccchhhhccc--CCHHHHHHHHHHcCc-cccCHHHHHHHHH
Confidence 67665432 12 2344568999999 999999999999987 8999999998864
No 12
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=97.99 E-value=3.9e-07 Score=56.71 Aligned_cols=34 Identities=15% Similarity=0.090 Sum_probs=27.7
Q ss_pred cceeeeehhhhhhhccCCCccceeccCCceeeee
Q psy12658 31 RANLVFPVSRCHRFLKKGRYAERIGLGAWSINGI 64 (67)
Q Consensus 31 rAgLqFPVgRv~r~Lr~g~ya~Rvga~ApVYlaa 64 (67)
-.+++||++||+|.++.+.+..+|++.||||++.
T Consensus 15 ~~~~~lP~arIkrImK~~~~~~~is~eA~~~lak 48 (97)
T 1n1j_B 15 FRVQELPLARIKKIMKLDEDVKMISAEAPVLFAK 48 (97)
T ss_dssp -----CCHHHHHHHHTTSTTCCCBCTHHHHHHHH
T ss_pred cCCCcCCHHHHHHHHccCccccccChHHHHHHHH
Confidence 3478999999999999999999999999999874
No 13
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=97.94 E-value=5.3e-07 Score=60.00 Aligned_cols=42 Identities=19% Similarity=0.217 Sum_probs=18.3
Q ss_pred CCCccccccceeeeehhhhhhhccCCCccceeccCCceeeee
Q psy12658 23 KAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGAWSINGI 64 (67)
Q Consensus 23 ~k~~SrS~rAgLqFPVgRv~r~Lr~g~ya~Rvga~ApVYlaa 64 (67)
.++.+++...+++||++||.+.++...+..+|++.|||+++.
T Consensus 7 ~k~~s~~~~~~~~LPlaRIKrIMK~dpdv~~Is~eA~vliak 48 (140)
T 2byk_A 7 QPPVERPPTAETFLPLSRVRTIMKSSMDTGLITNEVLFLMTK 48 (140)
T ss_dssp ----------------------CCSSSSCSCCCHHHHHHHHH
T ss_pred CCCCCCCcccCCCCCHHHHHHHHhcCcccccccHHHHHHHHH
Confidence 346789999999999999999999999999999999999863
No 14
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=97.72 E-value=1.9e-06 Score=55.55 Aligned_cols=31 Identities=16% Similarity=0.152 Sum_probs=28.9
Q ss_pred eeeehhhhhhhccCCCccceeccCCceeeee
Q psy12658 34 LVFPVSRCHRFLKKGRYAERIGLGAWSINGI 64 (67)
Q Consensus 34 LqFPVgRv~r~Lr~g~ya~Rvga~ApVYlaa 64 (67)
-||||+||+|.+|.+.+..+|++.||||++.
T Consensus 40 ~~lPvaRIkrImK~d~~~~~is~eA~v~la~ 70 (119)
T 4g92_C 40 HQLPLARIKKVMKADPEVKMISAEAPILFAK 70 (119)
T ss_dssp CSSCHHHHHHHHHTSTTCCEECTHHHHHHHH
T ss_pred CCCCHHHHHHHHhhCCccccccHHHHHHHHH
Confidence 4799999999999999999999999999874
No 15
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=96.22 E-value=0.00025 Score=47.90 Aligned_cols=33 Identities=21% Similarity=0.228 Sum_probs=30.3
Q ss_pred ccceeeeehhhhhhhccCCCccceeccCCceeee
Q psy12658 30 QRANLVFPVSRCHRFLKKGRYAERIGLGAWSING 63 (67)
Q Consensus 30 ~rAgLqFPVgRv~r~Lr~g~ya~Rvga~ApVYla 63 (67)
.+++|.||++.|+|++|++ ++.||+..|.++|+
T Consensus 77 d~~~l~lP~a~V~Ri~k~~-g~~RVS~~A~~~l~ 109 (154)
T 1f1e_A 77 DYDGELFGRATVRRILKRA-GIERASSDAVDLYN 109 (154)
T ss_dssp TCCSCCCCHHHHHHHHHHT-TCCEECHHHHHHHH
T ss_pred ccccccCCccHHHHHHHHc-CCccchHHHHHHHH
Confidence 4789999999999999999 89999999998875
No 16
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=73.13 E-value=0.18 Score=28.52 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=22.3
Q ss_pred eeehhhhhhhccCCCccceeccCCceee
Q psy12658 35 VFPVSRCHRFLKKGRYAERIGLGAWSIN 62 (67)
Q Consensus 35 qFPVgRv~r~Lr~g~ya~Rvga~ApVYl 62 (67)
.+|.++|.|++|+. ...||++.|.+.|
T Consensus 2 ~lP~a~v~Ri~k~~-~~~ris~~A~~~l 28 (68)
T 1b67_A 2 ELPIAPIGRIIKNA-GAERVSDDARIAL 28 (68)
T ss_dssp CSCHHHHHHHHHHT-TCSEECHHHHHHH
T ss_pred CCCccHHHHHHhcC-CcccCCHHHHHHH
Confidence 47999999999998 6679998887654
No 17
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=59.14 E-value=0.5 Score=26.92 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=21.4
Q ss_pred eeehhhhhhhccCCCccceeccCCceee
Q psy12658 35 VFPVSRCHRFLKKGRYAERIGLGAWSIN 62 (67)
Q Consensus 35 qFPVgRv~r~Lr~g~ya~Rvga~ApVYl 62 (67)
.||++.|+|++|++ -..|++..+...|
T Consensus 6 ~lp~a~v~Rl~r~~-g~~ris~~a~~~l 32 (70)
T 1ku5_A 6 ELPIAPVDRLIRKA-GAERVSEQAAKVL 32 (70)
T ss_dssp CSCHHHHHHHHHHT-TCSEECHHHHHHH
T ss_pred cCChHHHHHHHHHc-CcceeCHHHHHHH
Confidence 58999999999987 3678887766544
No 18
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=45.25 E-value=1.3 Score=28.39 Aligned_cols=30 Identities=17% Similarity=0.154 Sum_probs=19.8
Q ss_pred eeeeehhhhhhhccC-CCccceeccCCceee
Q psy12658 33 NLVFPVSRCHRFLKK-GRYAERIGLGAWSIN 62 (67)
Q Consensus 33 gLqFPVgRv~r~Lr~-g~ya~Rvga~ApVYl 62 (67)
.+.||+++|.|.+++ .--..+|+..|++.|
T Consensus 7 d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l 37 (128)
T 2byk_B 7 DLNLPNAVIGRLIKEALPESASVSKEARAAI 37 (128)
T ss_dssp ----CCSHHHHHHHHHSCTTCEECHHHHHHH
T ss_pred cccCCHHHHHHHHHHhCcccceECHHHHHHH
Confidence 578999999999995 444568888776544
No 19
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=40.84 E-value=1.7 Score=25.89 Aligned_cols=30 Identities=17% Similarity=0.300 Sum_probs=22.3
Q ss_pred eeeeehhhhhhhccCCC-ccceeccCCceee
Q psy12658 33 NLVFPVSRCHRFLKKGR-YAERIGLGAWSIN 62 (67)
Q Consensus 33 gLqFPVgRv~r~Lr~g~-ya~Rvga~ApVYl 62 (67)
.+.+|.++|.|++|+.- -..||+..|++-|
T Consensus 6 d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l 36 (93)
T 1n1j_A 6 DIYLPIANVARIMKNAIPQTGKIAKDAKECV 36 (93)
T ss_dssp -CCCCHHHHHHHHHHTSCTTCEECHHHHHHH
T ss_pred cccCChhHHHHHHHHhCCccceeCHHHHHHH
Confidence 57899999999999873 2368887776543
No 20
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=29.21 E-value=4 Score=23.53 Aligned_cols=27 Identities=15% Similarity=0.197 Sum_probs=20.3
Q ss_pred eeehhhhhhhccCCCccceeccCCcee
Q psy12658 35 VFPVSRCHRFLKKGRYAERIGLGAWSI 61 (67)
Q Consensus 35 qFPVgRv~r~Lr~g~ya~Rvga~ApVY 61 (67)
.+|.+.|.|.+++-.-..+|+..|.+.
T Consensus 4 ~LP~A~V~rI~K~~~p~~~is~~A~~~ 30 (76)
T 3b0c_W 4 TVPRGTLRKIIKKHKPHLRLAANTDLL 30 (76)
T ss_dssp CCCHHHHHHHHHHHCTTCEECTTHHHH
T ss_pred cccccHHHHHHHHhCCCCccCHHHHHH
Confidence 589999999999643356888776543
No 21
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=20.22 E-value=22 Score=21.70 Aligned_cols=31 Identities=16% Similarity=0.162 Sum_probs=19.6
Q ss_pred CccccccceeeeehhhhhhhccCCCccceeccCC
Q psy12658 25 PKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58 (67)
Q Consensus 25 ~~SrS~rAgLqFPVgRv~r~Lr~g~ya~Rvga~A 58 (67)
...+.+--+ +|+.-|.|+++.+- ..||+..+
T Consensus 20 k~~r~~i~~--ip~~~I~Rlar~~G-v~rIS~da 50 (102)
T 1id3_B 20 KILRDNIQG--ITKPAIRRLARRGG-VKRISGLI 50 (102)
T ss_dssp ----CCGGG--SCHHHHHHHHHHTT-CCEECTTH
T ss_pred HHHHhccCC--CCHHHHHHHHHHcC-chhccHHH
Confidence 334555556 78888999888764 37888654
Done!