RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12658
         (67 letters)



>d1u35c1 a.22.1.1 (C:814-919) macro-H2A.1, histone domain {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 106

 Score = 53.6 bits (129), Expect = 5e-12
 Identities = 17/33 (51%), Positives = 23/33 (69%)

Query: 26 KSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
           SRS +A ++FPV R  R++KKG    RIG+GA
Sbjct: 2  TSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGA 34


>d1tzya_ a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus),
          erythrocytes [TaxId: 9031]}
          Length = 106

 Score = 52.9 bits (127), Expect = 1e-11
 Identities = 23/34 (67%), Positives = 25/34 (73%)

Query: 25 PKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
           KSRS RA L FPV R HR L+KG YAER+G GA
Sbjct: 2  AKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGA 35


>d1f66c_ a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), variant
          H2A.Z [TaxId: 9606]}
          Length = 103

 Score = 48.3 bits (115), Expect = 6e-10
 Identities = 15/28 (53%), Positives = 16/28 (57%)

Query: 26 KSRSQRANLVFPVSRCHRFLKKGRYAER 53
           SRSQRA L FPV R HR LK    +  
Sbjct: 2  VSRSQRAGLQFPVGRIHRHLKSRTTSHG 29


>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 172

 Score = 47.1 bits (112), Expect = 5e-09
 Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 20  KAKKAPKSRSQRANLVFPVSRCHRFLKKGRYAERIGLGA 58
            A+ A + R +R  L  PV + H  LK+     +I    
Sbjct: 84  DAQSAIEKRKRRNPLSLPVEKIHPLLKEV-LGYKIDHQV 121


>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 66

 Score = 29.3 bits (66), Expect = 0.007
 Identities = 3/23 (13%), Positives = 9/23 (39%)

Query: 36 FPVSRCHRFLKKGRYAERIGLGA 58
          FP +R  + ++      ++    
Sbjct: 3  FPPARIKKIMQTDEEIGKVAAAV 25


>d1lura_ b.30.5.4 (A:) Aldose 1-epimerase homologue {Nematode
          (Caenorhabditis elegans) [TaxId: 6239]}
          Length = 329

 Score = 27.5 bits (60), Expect = 0.094
 Identities = 7/20 (35%), Positives = 8/20 (40%)

Query: 48 GRYAERIGLGAWSINGIQRR 67
          GR A RI       +G Q  
Sbjct: 61 GRVANRIKNSTLHFDGKQYT 80


>d1z45a1 b.30.5.4 (A:358-699) Galactose mutarotase {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 342

 Score = 27.5 bits (60), Expect = 0.11
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 48 GRYAERIGLGAWSING 63
          GRYA RI  G +S+  
Sbjct: 71 GRYANRISKGKFSLCN 86


>d1so0a_ b.30.5.4 (A:) Galactose mutarotase {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 344

 Score = 26.4 bits (57), Expect = 0.28
 Identities = 7/16 (43%), Positives = 10/16 (62%)

Query: 48 GRYAERIGLGAWSING 63
          GR A RI  G + ++G
Sbjct: 79 GRVANRIAKGTFKVDG 94


>d1bg6a1 a.100.1.5 (A:188-359) N-(1-D-carboxylethyl)-L-norvaline
           dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}
          Length = 172

 Score = 25.9 bits (57), Expect = 0.33
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 44  FLKKGRYAERIGLGAWSINGIQRR 67
           F K+GR  E++GL   +  GI+  
Sbjct: 147 FRKEGRTLEKLGLSGLTAAGIRSA 170


>d1nsza_ b.30.5.4 (A:) Galactose mutarotase {Lactococcus lactis
          [TaxId: 1358]}
          Length = 340

 Score = 25.9 bits (56), Expect = 0.36
 Identities = 7/16 (43%), Positives = 8/16 (50%)

Query: 48 GRYAERIGLGAWSING 63
          G  A RI  G   I+G
Sbjct: 65 GPTAGRIKDGLVKISG 80


>d1f2ri_ d.15.2.1 (I:) Inhibitor of caspase-activated DNase
          (ICAD), DFF45, N-terminal domain {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 100

 Score = 24.4 bits (53), Expect = 0.73
 Identities = 6/26 (23%), Positives = 8/26 (30%)

Query: 23 KAPKSRSQRANLVFPVSRCHRFLKKG 48
           AP     R      + R H   + G
Sbjct: 8  SAPDPDDVRPLKPCLLRRNHSRDQHG 33


>d2awna1 b.40.6.3 (A:236-370) Maltose transport protein MalK,
           C-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 135

 Score = 22.9 bits (48), Expect = 3.9
 Identities = 7/25 (28%), Positives = 10/25 (40%)

Query: 30  QRANLVFPVSRCHRFLKKGRYAERI 54
               +  P  RCH F + G    R+
Sbjct: 106 ATFAIGLPPERCHLFREDGTACRRL 130


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.133    0.393 

Gapped
Lambda     K      H
   0.267   0.0642    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 245,261
Number of extensions: 8063
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 13
Length of query: 67
Length of database: 2,407,596
Length adjustment: 36
Effective length of query: 31
Effective length of database: 1,913,316
Effective search space: 59312796
Effective search space used: 59312796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.1 bits)