Query psy12659
Match_columns 1051
No_of_seqs 785 out of 3373
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 16:14:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12659.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12659hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b3f_X DNA-binding protein smu 99.9 1.2E-22 4E-27 247.0 16.8 149 114-270 128-278 (646)
2 2gk6_A Regulator of nonsense t 99.7 6.2E-17 2.1E-21 196.2 19.7 139 116-260 117-259 (624)
3 2xzl_A ATP-dependent helicase 99.7 9.4E-17 3.2E-21 199.5 18.7 141 116-260 297-439 (802)
4 2wjy_A Regulator of nonsense t 99.7 7.7E-16 2.6E-20 191.2 20.1 139 116-260 293-435 (800)
5 4b3f_X DNA-binding protein smu 99.6 1.5E-16 5E-21 193.5 9.8 77 814-895 188-265 (646)
6 2gk6_A Regulator of nonsense t 99.3 2.1E-12 7.1E-17 156.6 10.8 78 815-896 180-257 (624)
7 2xzl_A ATP-dependent helicase 99.3 3.1E-12 1.1E-16 159.0 9.0 78 815-896 360-437 (802)
8 2wjy_A Regulator of nonsense t 99.2 9E-12 3.1E-16 154.8 10.1 132 729-896 302-433 (800)
9 3e1s_A Exodeoxyribonuclease V, 98.8 9.4E-09 3.2E-13 123.6 10.4 66 175-242 187-252 (574)
10 3e1s_A Exodeoxyribonuclease V, 98.8 1.4E-08 4.8E-13 122.1 10.2 66 813-880 187-252 (574)
11 3lfu_A DNA helicase II; SF1 he 98.7 1.5E-08 5.2E-13 122.3 9.0 67 177-245 9-77 (647)
12 3upu_A ATP-dependent DNA helic 98.7 1.8E-08 6.2E-13 117.6 8.9 66 176-242 24-94 (459)
13 3lfu_A DNA helicase II; SF1 he 98.6 2.8E-08 9.6E-13 120.0 8.6 67 815-883 9-77 (647)
14 1w36_D RECD, exodeoxyribonucle 98.6 4.8E-08 1.6E-12 118.2 8.6 66 179-244 151-218 (608)
15 3upu_A ATP-dependent DNA helic 98.5 9E-08 3.1E-12 111.7 8.7 64 815-880 25-94 (459)
16 1w36_D RECD, exodeoxyribonucle 98.5 9.3E-08 3.2E-12 115.7 8.8 66 817-882 151-218 (608)
17 1uaa_A REP helicase, protein ( 98.4 2.4E-07 8.2E-12 113.0 8.4 67 177-245 2-70 (673)
18 1uaa_A REP helicase, protein ( 98.4 4.7E-07 1.6E-11 110.5 8.6 67 815-883 2-70 (673)
19 1pjr_A PCRA; DNA repair, DNA r 98.4 5.1E-07 1.7E-11 111.3 9.0 67 177-245 11-79 (724)
20 1pjr_A PCRA; DNA repair, DNA r 98.3 7.6E-07 2.6E-11 109.8 8.6 67 815-883 11-79 (724)
21 3u4q_A ATP-dependent helicase/ 98.0 5.5E-06 1.9E-10 107.8 8.4 69 174-244 7-79 (1232)
22 3b6e_A Interferon-induced heli 98.0 7.6E-06 2.6E-10 83.9 7.4 71 174-244 30-105 (216)
23 3b6e_A Interferon-induced heli 97.9 1.6E-05 5.5E-10 81.4 6.9 72 812-883 30-106 (216)
24 2fz4_A DNA repair protein RAD2 97.9 6.9E-05 2.4E-09 79.8 11.8 76 175-258 91-167 (237)
25 3u4q_A ATP-dependent helicase/ 97.8 1.6E-05 5.4E-10 103.6 7.9 67 814-882 9-79 (1232)
26 2gxq_A Heat resistant RNA depe 97.8 6.2E-05 2.1E-09 76.9 10.4 70 177-246 23-96 (207)
27 1qde_A EIF4A, translation init 97.8 3.4E-05 1.2E-09 80.1 8.1 70 177-246 36-106 (224)
28 2fz4_A DNA repair protein RAD2 97.8 5.9E-05 2E-09 80.4 9.5 69 812-885 90-158 (237)
29 1qde_A EIF4A, translation init 97.7 4.6E-05 1.6E-09 79.1 8.0 69 815-883 36-105 (224)
30 2gxq_A Heat resistant RNA depe 97.7 7.1E-05 2.4E-09 76.5 9.2 70 815-884 23-96 (207)
31 3iuy_A Probable ATP-dependent 97.7 0.00012 4.3E-09 76.3 10.5 70 177-246 42-118 (228)
32 2pl3_A Probable ATP-dependent 97.7 7.6E-05 2.6E-09 78.3 8.6 71 176-246 46-121 (236)
33 1hv8_A Putative ATP-dependent 97.7 5.6E-05 1.9E-09 83.2 7.9 69 177-245 28-97 (367)
34 1rif_A DAR protein, DNA helica 97.6 6.1E-05 2.1E-09 81.6 7.6 71 176-247 112-182 (282)
35 1t6n_A Probable ATP-dependent 97.6 9.8E-05 3.4E-09 76.5 8.7 69 177-245 36-105 (220)
36 1vec_A ATP-dependent RNA helic 97.6 9.7E-05 3.3E-09 75.5 8.5 70 177-246 25-95 (206)
37 1rif_A DAR protein, DNA helica 97.6 6.8E-05 2.3E-09 81.3 7.6 70 814-884 112-181 (282)
38 2pl3_A Probable ATP-dependent 97.6 0.00012 4.1E-09 76.8 8.9 70 815-884 47-121 (236)
39 1hv8_A Putative ATP-dependent 97.6 8.3E-05 2.9E-09 81.9 8.1 69 815-883 28-97 (367)
40 3ber_A Probable ATP-dependent 97.6 0.00017 5.7E-09 77.1 9.8 69 177-245 65-134 (249)
41 2oxc_A Probable ATP-dependent 97.6 9.8E-05 3.4E-09 77.5 7.7 70 177-246 46-116 (230)
42 1t6n_A Probable ATP-dependent 97.6 0.00014 4.7E-09 75.4 8.6 69 815-883 36-105 (220)
43 1vec_A ATP-dependent RNA helic 97.6 0.00012 4E-09 74.9 7.9 69 815-883 25-94 (206)
44 3bor_A Human initiation factor 97.6 5.9E-05 2E-09 79.7 5.7 70 177-246 52-122 (237)
45 1q0u_A Bstdead; DEAD protein, 97.5 8.4E-05 2.9E-09 77.2 6.5 70 176-245 25-95 (219)
46 2oxc_A Probable ATP-dependent 97.5 0.00015 5E-09 76.2 8.0 70 815-884 46-116 (230)
47 3bor_A Human initiation factor 97.5 9.1E-05 3.1E-09 78.2 6.3 70 815-884 52-122 (237)
48 3ber_A Probable ATP-dependent 97.5 0.00026 8.9E-09 75.6 9.7 69 815-883 65-134 (249)
49 1q0u_A Bstdead; DEAD protein, 97.5 0.00012 4E-09 76.1 6.3 69 815-883 26-95 (219)
50 3dkp_A Probable ATP-dependent 97.4 0.00031 1.1E-08 74.1 9.4 69 177-245 51-121 (245)
51 3iuy_A Probable ATP-dependent 97.4 0.00032 1.1E-08 73.1 9.4 70 815-884 42-118 (228)
52 3oiy_A Reverse gyrase helicase 97.4 0.00036 1.2E-08 79.3 10.3 68 176-245 20-87 (414)
53 3oiy_A Reverse gyrase helicase 97.4 0.00026 8.8E-09 80.5 9.0 68 814-883 20-87 (414)
54 3tbk_A RIG-I helicase domain; 97.4 0.00038 1.3E-08 81.2 10.4 71 813-883 2-75 (555)
55 2fwr_A DNA repair protein RAD2 97.4 0.00044 1.5E-08 80.0 10.8 76 175-258 91-167 (472)
56 2z0m_A 337AA long hypothetical 97.4 0.00035 1.2E-08 76.1 8.9 65 177-246 16-80 (337)
57 1wp9_A ATP-dependent RNA helic 97.4 0.00049 1.7E-08 77.9 10.4 79 176-256 8-87 (494)
58 3tbk_A RIG-I helicase domain; 97.4 0.00063 2.1E-08 79.4 11.6 70 176-245 3-75 (555)
59 3dkp_A Probable ATP-dependent 97.4 0.00042 1.4E-08 73.0 9.2 69 815-883 51-121 (245)
60 1wrb_A DJVLGB; RNA helicase, D 97.4 0.00079 2.7E-08 71.4 11.4 71 176-246 44-124 (253)
61 2oca_A DAR protein, ATP-depend 97.4 0.00035 1.2E-08 81.7 9.4 70 176-246 112-181 (510)
62 2fwr_A DNA repair protein RAD2 97.4 0.00048 1.7E-08 79.7 10.4 69 812-885 90-158 (472)
63 3fe2_A Probable ATP-dependent 97.3 0.00053 1.8E-08 72.5 9.8 70 176-245 50-125 (242)
64 3pey_A ATP-dependent RNA helic 97.3 0.00055 1.9E-08 76.0 10.4 71 176-246 26-99 (395)
65 3ly5_A ATP-dependent RNA helic 97.3 0.00026 8.9E-09 76.2 7.1 70 177-246 76-150 (262)
66 2oca_A DAR protein, ATP-depend 97.3 0.00025 8.6E-09 83.0 7.5 71 813-884 111-181 (510)
67 1xti_A Probable ATP-dependent 97.3 0.00044 1.5E-08 77.1 9.0 69 177-245 30-99 (391)
68 2z0m_A 337AA long hypothetical 97.3 0.0005 1.7E-08 74.8 9.2 64 815-883 16-79 (337)
69 4a2p_A RIG-I, retinoic acid in 97.3 0.00066 2.2E-08 79.5 10.7 71 175-245 5-78 (556)
70 4a2p_A RIG-I, retinoic acid in 97.3 0.00051 1.7E-08 80.4 9.8 72 812-883 4-78 (556)
71 3fht_A ATP-dependent RNA helic 97.3 0.00033 1.1E-08 78.6 7.7 71 176-246 46-119 (412)
72 3ly5_A ATP-dependent RNA helic 97.3 0.00035 1.2E-08 75.1 7.5 70 815-884 76-150 (262)
73 3pey_A ATP-dependent RNA helic 97.3 0.00048 1.7E-08 76.5 8.6 70 815-884 27-99 (395)
74 1s2m_A Putative ATP-dependent 97.3 0.0004 1.4E-08 78.0 8.0 70 177-246 43-113 (400)
75 3fe2_A Probable ATP-dependent 97.2 0.0007 2.4E-08 71.5 8.9 69 815-883 51-125 (242)
76 1wrb_A DJVLGB; RNA helicase, D 97.2 0.00089 3.1E-08 71.0 9.7 70 815-884 45-124 (253)
77 3eiq_A Eukaryotic initiation f 97.2 0.00045 1.5E-08 77.7 7.8 70 176-245 61-131 (414)
78 1s2m_A Putative ATP-dependent 97.2 0.00049 1.7E-08 77.3 8.0 69 815-883 43-112 (400)
79 1xti_A Probable ATP-dependent 97.2 0.00063 2.2E-08 75.9 8.7 69 815-883 30-99 (391)
80 1wp9_A ATP-dependent RNA helic 97.2 0.0006 2.1E-08 77.1 8.5 68 814-883 8-75 (494)
81 3fht_A ATP-dependent RNA helic 97.2 0.00055 1.9E-08 76.8 8.0 69 815-883 47-118 (412)
82 1fuu_A Yeast initiation factor 97.2 0.00027 9.2E-09 78.8 5.4 70 176-245 42-112 (394)
83 3l9o_A ATP-dependent RNA helic 97.2 0.0011 3.9E-08 85.3 11.8 73 810-884 179-251 (1108)
84 3eiq_A Eukaryotic initiation f 97.2 0.00058 2E-08 76.8 8.0 69 815-883 62-131 (414)
85 4a4z_A Antiviral helicase SKI2 97.2 0.00072 2.5E-08 86.3 9.7 71 811-883 35-105 (997)
86 2j0s_A ATP-dependent RNA helic 97.1 0.00048 1.7E-08 77.7 7.2 70 177-246 59-129 (410)
87 3llm_A ATP-dependent RNA helic 97.1 0.00069 2.4E-08 71.5 7.8 69 177-245 61-132 (235)
88 3vkw_A Replicase large subunit 97.1 0.00022 7.6E-09 83.0 4.0 47 192-245 161-207 (446)
89 1fuu_A Yeast initiation factor 97.1 0.00039 1.3E-08 77.6 5.8 69 815-883 43-112 (394)
90 3fmo_B ATP-dependent RNA helic 97.1 0.00075 2.6E-08 74.3 8.0 71 176-246 113-186 (300)
91 2j0s_A ATP-dependent RNA helic 97.1 0.00074 2.5E-08 76.2 8.1 70 815-884 59-129 (410)
92 3h1t_A Type I site-specific re 97.1 0.0004 1.4E-08 83.1 6.1 71 175-245 176-259 (590)
93 3l9o_A ATP-dependent RNA helic 97.1 0.0017 5.7E-08 83.8 12.2 74 171-246 178-251 (1108)
94 2i4i_A ATP-dependent RNA helic 97.1 0.0013 4.5E-08 74.0 9.8 70 176-245 36-124 (417)
95 2f8n_G Core histone macro-H2A. 97.1 0.00018 6.1E-09 69.4 2.1 44 895-938 74-117 (120)
96 3h1t_A Type I site-specific re 97.0 0.00048 1.7E-08 82.4 6.3 71 814-884 177-260 (590)
97 3llm_A ATP-dependent RNA helic 97.0 0.001 3.4E-08 70.3 7.8 69 815-883 61-132 (235)
98 2xgj_A ATP-dependent RNA helic 97.0 0.0012 4.1E-08 84.4 9.6 71 811-883 82-152 (1010)
99 2va8_A SSO2462, SKI2-type heli 97.0 0.0012 4.2E-08 80.8 9.4 67 177-244 30-97 (715)
100 3fmo_B ATP-dependent RNA helic 97.0 0.0012 4E-08 72.7 8.2 70 815-884 114-186 (300)
101 2nqb_C Histone H2A; nucleosome 97.0 0.00023 8E-09 68.9 2.1 44 895-938 75-118 (123)
102 4a4z_A Antiviral helicase SKI2 97.0 0.0016 5.3E-08 83.2 10.1 70 174-245 36-105 (997)
103 4a2q_A RIG-I, retinoic acid in 96.9 0.0023 7.7E-08 79.6 11.1 71 175-245 246-319 (797)
104 1tzy_A Histone H2A-IV; histone 96.9 0.00028 9.7E-09 68.9 2.4 44 895-938 77-120 (129)
105 1id3_C Histone H2A.1; nucleoso 96.9 0.00026 8.9E-09 69.3 2.1 45 894-938 76-120 (131)
106 3fmp_B ATP-dependent RNA helic 96.9 0.00098 3.4E-08 77.4 7.2 69 177-245 114-185 (479)
107 2i4i_A ATP-dependent RNA helic 96.9 0.0022 7.5E-08 72.2 9.8 69 815-883 37-124 (417)
108 3fho_A ATP-dependent RNA helic 96.9 0.00047 1.6E-08 81.2 4.4 70 177-246 141-213 (508)
109 3vkw_A Replicase large subunit 96.9 0.00039 1.4E-08 80.9 3.5 47 830-883 161-207 (446)
110 4ddu_A Reverse gyrase; topoiso 96.9 0.003 1E-07 81.4 11.9 81 176-258 77-157 (1104)
111 3ec2_A DNA replication protein 96.9 0.00095 3.3E-08 67.1 5.8 50 817-867 16-74 (180)
112 2p6r_A Afuhel308 helicase; pro 96.8 0.0012 4.2E-08 80.7 7.6 66 177-244 25-90 (702)
113 4a2q_A RIG-I, retinoic acid in 96.8 0.0024 8.2E-08 79.4 9.9 71 813-883 246-319 (797)
114 2xgj_A ATP-dependent RNA helic 96.8 0.0023 7.9E-08 81.7 10.0 70 174-245 83-152 (1010)
115 2va8_A SSO2462, SKI2-type heli 96.8 0.0019 6.6E-08 79.0 9.0 66 815-881 30-96 (715)
116 1f66_C Histone H2A.Z; nucleoso 96.8 0.00044 1.5E-08 67.4 2.4 44 895-939 80-123 (128)
117 3fho_A ATP-dependent RNA helic 96.8 0.00058 2E-08 80.5 4.0 70 815-884 141-213 (508)
118 2db3_A ATP-dependent RNA helic 96.8 0.0027 9.3E-08 73.1 9.5 70 177-246 78-153 (434)
119 3ec2_A DNA replication protein 96.8 0.0015 5.3E-08 65.6 6.6 50 178-228 15-73 (180)
120 4gl2_A Interferon-induced heli 96.8 0.00079 2.7E-08 81.8 5.2 73 812-884 4-81 (699)
121 4gl2_A Interferon-induced heli 96.8 0.00079 2.7E-08 81.8 5.2 83 175-257 5-92 (699)
122 1gm5_A RECG; helicase, replica 96.8 0.0014 4.8E-08 81.5 7.5 70 812-883 365-440 (780)
123 3i5x_A ATP-dependent RNA helic 96.7 0.0048 1.6E-07 73.0 11.4 69 176-244 93-168 (563)
124 2zj8_A DNA helicase, putative 96.7 0.0016 5.6E-08 79.8 7.6 66 177-244 23-90 (720)
125 3fmp_B ATP-dependent RNA helic 96.7 0.0016 5.5E-08 75.5 7.2 69 815-883 114-185 (479)
126 4ddu_A Reverse gyrase; topoiso 96.7 0.0028 9.6E-08 81.7 9.8 70 813-884 76-145 (1104)
127 2ykg_A Probable ATP-dependent 96.7 0.0036 1.2E-07 76.0 10.3 72 174-245 10-84 (696)
128 1w36_B RECB, exodeoxyribonucle 96.7 0.0016 5.4E-08 84.6 7.3 53 192-244 16-78 (1180)
129 1gm5_A RECG; helicase, replica 96.7 0.002 6.7E-08 80.2 7.6 70 174-245 365-440 (780)
130 2w58_A DNAI, primosome compone 96.7 0.0022 7.6E-08 65.4 6.7 35 831-867 55-89 (202)
131 2f8n_K Histone H2A type 1; nuc 96.7 0.0005 1.7E-08 68.5 1.8 46 894-939 95-140 (149)
132 2db3_A ATP-dependent RNA helic 96.6 0.0044 1.5E-07 71.4 9.8 70 815-884 78-153 (434)
133 3sqw_A ATP-dependent RNA helic 96.6 0.0045 1.6E-07 73.9 9.9 69 177-245 43-118 (579)
134 2dr3_A UPF0273 protein PH0284; 96.6 0.0028 9.6E-08 66.1 7.2 53 830-885 23-75 (247)
135 2p6r_A Afuhel308 helicase; pro 96.6 0.0014 4.6E-08 80.3 5.4 65 815-881 25-89 (702)
136 1w36_B RECB, exodeoxyribonucle 96.6 0.002 6.9E-08 83.6 7.2 53 831-883 17-79 (1180)
137 2w58_A DNAI, primosome compone 96.6 0.0024 8.3E-08 65.1 6.4 35 193-229 55-89 (202)
138 3bos_A Putative DNA replicatio 96.6 0.0039 1.3E-07 64.3 7.9 52 816-869 35-89 (242)
139 3i5x_A ATP-dependent RNA helic 96.6 0.0045 1.5E-07 73.2 9.4 68 815-882 94-168 (563)
140 2zj8_A DNA helicase, putative 96.5 0.002 6.8E-08 79.1 6.4 66 815-882 23-90 (720)
141 2ykg_A Probable ATP-dependent 96.5 0.0054 1.8E-07 74.4 9.8 70 814-883 12-84 (696)
142 2dr3_A UPF0273 protein PH0284; 96.5 0.0037 1.3E-07 65.2 7.3 53 192-247 23-75 (247)
143 3bos_A Putative DNA replicatio 96.5 0.0037 1.3E-07 64.4 7.2 51 178-230 35-88 (242)
144 3sqw_A ATP-dependent RNA helic 96.5 0.0052 1.8E-07 73.4 9.4 69 815-883 43-118 (579)
145 2eyq_A TRCF, transcription-rep 96.5 0.0046 1.6E-07 80.1 9.4 70 812-883 600-675 (1151)
146 4a2w_A RIG-I, retinoic acid in 96.5 0.0047 1.6E-07 78.3 9.4 71 175-245 246-319 (936)
147 4a2w_A RIG-I, retinoic acid in 96.4 0.0041 1.4E-07 78.8 8.2 71 813-883 246-319 (936)
148 1jbk_A CLPB protein; beta barr 96.4 0.005 1.7E-07 60.6 7.1 39 180-218 28-69 (195)
149 2eyq_A TRCF, transcription-rep 96.3 0.0061 2.1E-07 78.9 9.1 69 175-245 601-675 (1151)
150 3dmq_A RNA polymerase-associat 96.3 0.0054 1.8E-07 78.1 8.5 70 812-882 150-221 (968)
151 1jbk_A CLPB protein; beta barr 96.2 0.0064 2.2E-07 59.8 6.9 39 818-856 28-69 (195)
152 2orw_A Thymidine kinase; TMTK, 96.2 0.0047 1.6E-07 63.3 5.7 38 830-869 3-40 (184)
153 3te6_A Regulatory protein SIR3 96.1 0.0035 1.2E-07 70.0 4.9 53 191-243 44-106 (318)
154 2orw_A Thymidine kinase; TMTK, 96.1 0.0054 1.8E-07 62.8 5.8 38 192-231 3-40 (184)
155 1z63_A Helicase of the SNF2/RA 96.0 0.015 5.3E-07 67.6 9.9 71 174-245 34-108 (500)
156 3dmq_A RNA polymerase-associat 96.0 0.0098 3.4E-07 75.7 8.8 68 176-244 152-221 (968)
157 3te6_A Regulatory protein SIR3 96.0 0.0054 1.9E-07 68.5 5.4 28 830-857 45-72 (318)
158 1gku_B Reverse gyrase, TOP-RG; 96.0 0.0098 3.4E-07 76.4 8.4 67 176-245 56-122 (1054)
159 2p65_A Hypothetical protein PF 95.9 0.005 1.7E-07 60.7 4.5 39 180-218 28-69 (187)
160 2chg_A Replication factor C sm 95.9 0.0064 2.2E-07 61.3 5.4 41 179-219 22-65 (226)
161 3dm5_A SRP54, signal recogniti 95.9 0.013 4.6E-07 68.1 8.6 54 830-885 100-156 (443)
162 2w0m_A SSO2452; RECA, SSPF, un 95.9 0.011 3.8E-07 60.7 7.2 53 192-247 23-75 (235)
163 1gku_B Reverse gyrase, TOP-RG; 95.9 0.01 3.5E-07 76.2 8.3 65 816-883 58-122 (1054)
164 2chg_A Replication factor C sm 95.9 0.0077 2.6E-07 60.7 5.8 50 818-867 23-75 (226)
165 2p65_A Hypothetical protein PF 95.9 0.0093 3.2E-07 58.8 6.0 38 819-856 29-69 (187)
166 2xau_A PRE-mRNA-splicing facto 95.9 0.0094 3.2E-07 74.1 7.4 66 179-244 95-162 (773)
167 2kjq_A DNAA-related protein; s 95.8 0.0076 2.6E-07 59.6 5.3 51 815-868 22-72 (149)
168 1l8q_A Chromosomal replication 95.8 0.015 5.2E-07 63.9 8.2 37 831-869 38-74 (324)
169 2w0m_A SSO2452; RECA, SSPF, un 95.8 0.013 4.4E-07 60.2 7.1 53 830-885 23-75 (235)
170 2kjq_A DNAA-related protein; s 95.8 0.0079 2.7E-07 59.5 5.1 51 177-230 22-72 (149)
171 1njg_A DNA polymerase III subu 95.8 0.0082 2.8E-07 61.1 5.3 40 179-218 28-71 (250)
172 3kl4_A SRP54, signal recogniti 95.7 0.018 6.1E-07 67.0 8.6 54 830-885 97-153 (433)
173 2zpa_A Uncharacterized protein 95.7 0.012 4.2E-07 71.6 7.5 62 177-243 175-238 (671)
174 2zts_A Putative uncharacterize 95.7 0.0055 1.9E-07 63.9 3.9 55 830-886 30-84 (251)
175 2qgz_A Helicase loader, putati 95.7 0.0091 3.1E-07 66.0 5.9 37 830-868 152-189 (308)
176 3dm5_A SRP54, signal recogniti 95.7 0.012 4.1E-07 68.6 7.0 54 192-247 100-156 (443)
177 1l8q_A Chromosomal replication 95.7 0.014 4.8E-07 64.2 7.3 36 193-230 38-73 (324)
178 3h4m_A Proteasome-activating n 95.7 0.0084 2.9E-07 64.4 5.3 39 177-215 20-74 (285)
179 3kl4_A SRP54, signal recogniti 95.7 0.015 5.1E-07 67.6 7.5 54 192-247 97-153 (433)
180 3io5_A Recombination and repai 95.7 0.011 3.7E-07 66.2 6.1 62 189-253 25-86 (333)
181 2qby_B CDC6 homolog 3, cell di 95.7 0.013 4.4E-07 65.4 6.8 28 192-219 45-72 (384)
182 2z4s_A Chromosomal replication 95.6 0.018 6.1E-07 66.8 8.2 50 192-242 130-179 (440)
183 2v1x_A ATP-dependent DNA helic 95.6 0.018 6.1E-07 69.4 8.3 66 177-247 44-109 (591)
184 1njg_A DNA polymerase III subu 95.6 0.0096 3.3E-07 60.6 5.1 40 817-856 28-71 (250)
185 2zts_A Putative uncharacterize 95.6 0.0091 3.1E-07 62.2 5.0 54 192-247 30-83 (251)
186 2zpa_A Uncharacterized protein 95.6 0.011 3.6E-07 72.2 6.2 64 814-882 174-239 (671)
187 2v1u_A Cell division control p 95.6 0.01 3.4E-07 65.9 5.6 41 179-219 24-71 (387)
188 3n70_A Transport activator; si 95.6 0.0081 2.8E-07 58.6 4.3 24 829-852 23-46 (145)
189 3b9p_A CG5977-PA, isoform A; A 95.6 0.0098 3.3E-07 64.4 5.4 37 179-215 26-77 (297)
190 4f92_B U5 small nuclear ribonu 95.6 0.02 6.8E-07 76.9 9.3 69 176-244 925-994 (1724)
191 2jlq_A Serine protease subunit 95.6 0.0053 1.8E-07 71.3 3.5 59 823-883 11-71 (451)
192 2vl7_A XPD; helicase, unknown 95.6 0.019 6.6E-07 68.3 8.3 68 813-885 5-76 (540)
193 2vl7_A XPD; helicase, unknown 95.6 0.022 7.6E-07 67.7 8.9 73 176-256 6-82 (540)
194 2xau_A PRE-mRNA-splicing facto 95.6 0.014 4.8E-07 72.5 7.4 64 819-882 97-162 (773)
195 3n70_A Transport activator; si 95.6 0.0086 2.9E-07 58.4 4.4 24 191-214 23-46 (145)
196 2wv9_A Flavivirin protease NS2 95.6 0.008 2.7E-07 73.6 5.0 61 184-246 227-294 (673)
197 2z83_A Helicase/nucleoside tri 95.5 0.0083 2.8E-07 69.9 4.9 52 190-243 19-71 (459)
198 3io5_A Recombination and repai 95.5 0.011 3.7E-07 66.2 5.5 42 827-868 25-66 (333)
199 1z63_A Helicase of the SNF2/RA 95.5 0.029 1E-06 65.2 9.4 70 814-884 36-109 (500)
200 3t15_A Ribulose bisphosphate c 95.5 0.007 2.4E-07 66.3 3.9 25 192-216 36-60 (293)
201 2z4s_A Chromosomal replication 95.5 0.025 8.5E-07 65.7 8.7 49 831-880 131-179 (440)
202 3h4m_A Proteasome-activating n 95.5 0.011 3.6E-07 63.6 5.2 24 830-853 51-74 (285)
203 2qz4_A Paraplegin; AAA+, SPG7, 95.5 0.013 4.6E-07 61.7 6.0 24 192-215 39-62 (262)
204 2qgz_A Helicase loader, putati 95.5 0.012 4.1E-07 65.1 5.8 36 192-229 152-188 (308)
205 1oyw_A RECQ helicase, ATP-depe 95.5 0.017 5.8E-07 68.4 7.5 66 177-247 25-90 (523)
206 2b8t_A Thymidine kinase; deoxy 95.5 0.011 3.9E-07 62.6 5.3 38 830-869 12-49 (223)
207 2qby_B CDC6 homolog 3, cell di 95.5 0.017 6E-07 64.3 7.1 27 830-856 45-71 (384)
208 1tue_A Replication protein E1; 95.5 0.0061 2.1E-07 64.2 3.1 24 193-216 59-82 (212)
209 2qby_A CDC6 homolog 1, cell di 95.5 0.019 6.6E-07 63.4 7.3 42 179-220 25-73 (386)
210 2z83_A Helicase/nucleoside tri 95.5 0.011 3.8E-07 68.8 5.6 54 828-883 19-73 (459)
211 2b8t_A Thymidine kinase; deoxy 95.4 0.013 4.3E-07 62.3 5.4 38 192-231 12-49 (223)
212 2wv9_A Flavivirin protease NS2 95.4 0.011 3.7E-07 72.4 5.5 62 822-885 227-295 (673)
213 3b9p_A CG5977-PA, isoform A; A 95.4 0.012 4.1E-07 63.6 5.2 25 830-854 54-78 (297)
214 3t15_A Ribulose bisphosphate c 95.4 0.0077 2.6E-07 66.0 3.6 25 830-854 36-60 (293)
215 2qz4_A Paraplegin; AAA+, SPG7, 95.4 0.023 8E-07 59.8 7.2 25 830-854 39-63 (262)
216 2v1u_A Cell division control p 95.3 0.022 7.7E-07 63.0 7.3 40 817-856 24-70 (387)
217 3eie_A Vacuolar protein sortin 95.3 0.015 5.2E-07 64.2 5.8 39 177-215 21-74 (322)
218 2v6i_A RNA helicase; membrane, 95.3 0.015 5.2E-07 67.1 6.0 49 193-243 3-52 (431)
219 1yks_A Genome polyprotein [con 95.3 0.014 4.7E-07 67.7 5.5 55 190-246 6-61 (440)
220 3bh0_A DNAB-like replicative h 95.3 0.024 8.1E-07 62.8 7.2 60 821-883 58-118 (315)
221 4f92_B U5 small nuclear ribonu 95.3 0.031 1.1E-06 75.1 9.5 68 815-882 926-994 (1724)
222 1tue_A Replication protein E1; 95.3 0.0078 2.7E-07 63.4 3.0 24 831-854 59-82 (212)
223 3syl_A Protein CBBX; photosynt 95.3 0.016 5.5E-07 62.8 5.7 37 193-229 68-106 (309)
224 2jlq_A Serine protease subunit 95.2 0.015 5E-07 67.5 5.6 57 185-243 11-69 (451)
225 2r62_A Cell division protease 95.2 0.0081 2.8E-07 64.0 3.1 25 830-854 44-68 (268)
226 1oyw_A RECQ helicase, ATP-depe 95.2 0.017 5.7E-07 68.5 6.0 67 815-886 25-91 (523)
227 3hws_A ATP-dependent CLP prote 95.2 0.013 4.4E-07 65.8 4.8 26 191-216 50-75 (363)
228 2v6i_A RNA helicase; membrane, 95.2 0.02 6.7E-07 66.1 6.4 51 830-882 2-53 (431)
229 2v1x_A ATP-dependent DNA helic 95.2 0.027 9.2E-07 67.9 7.7 67 815-886 44-110 (591)
230 2bjv_A PSP operon transcriptio 95.2 0.018 6.2E-07 61.3 5.6 39 829-869 28-66 (265)
231 1ofh_A ATP-dependent HSL prote 95.2 0.015 5.1E-07 62.7 5.0 26 191-216 49-74 (310)
232 1yks_A Genome polyprotein [con 95.1 0.02 6.8E-07 66.4 6.3 56 828-885 6-62 (440)
233 2r2a_A Uncharacterized protein 95.1 0.011 3.6E-07 61.7 3.4 24 831-854 6-29 (199)
234 2qby_A CDC6 homolog 1, cell di 95.1 0.028 9.4E-07 62.2 7.0 51 817-867 25-83 (386)
235 3bh0_A DNAB-like replicative h 95.1 0.023 7.8E-07 62.9 6.3 59 183-244 58-117 (315)
236 3eie_A Vacuolar protein sortin 95.1 0.019 6.4E-07 63.5 5.6 23 831-853 52-74 (322)
237 3u61_B DNA polymerase accessor 95.1 0.023 7.7E-07 62.3 6.2 62 176-242 28-93 (324)
238 4fcw_A Chaperone protein CLPB; 95.1 0.017 5.9E-07 62.5 5.2 35 831-867 48-82 (311)
239 3co5_A Putative two-component 95.0 0.008 2.7E-07 58.5 2.2 22 829-850 26-47 (143)
240 3syl_A Protein CBBX; photosynt 95.0 0.02 7E-07 62.0 5.6 38 831-868 68-107 (309)
241 1vma_A Cell division protein F 95.0 0.033 1.1E-06 61.8 7.3 54 830-885 104-160 (306)
242 2r2a_A Uncharacterized protein 95.0 0.011 3.8E-07 61.6 3.3 23 194-216 7-29 (199)
243 1ofh_A ATP-dependent HSL prote 95.0 0.018 6E-07 62.2 4.9 26 829-854 49-74 (310)
244 1iqp_A RFCS; clamp loader, ext 95.0 0.022 7.5E-07 61.8 5.7 64 179-242 30-97 (327)
245 3hws_A ATP-dependent CLP prote 95.0 0.017 5.8E-07 64.8 4.9 26 829-854 50-75 (363)
246 2whx_A Serine protease/ntpase/ 95.0 0.011 3.7E-07 71.7 3.5 59 823-883 179-238 (618)
247 4fcw_A Chaperone protein CLPB; 95.0 0.014 4.8E-07 63.3 4.1 26 193-218 48-73 (311)
248 2whx_A Serine protease/ntpase/ 94.9 0.0091 3.1E-07 72.4 2.8 58 185-244 179-237 (618)
249 1fnn_A CDC6P, cell division co 94.9 0.018 6E-07 64.1 4.9 24 194-217 46-69 (389)
250 3co5_A Putative two-component 94.9 0.012 4.1E-07 57.3 3.1 22 191-212 26-47 (143)
251 4a15_A XPD helicase, ATP-depen 94.9 0.046 1.6E-06 66.3 8.7 65 179-245 5-74 (620)
252 2r8r_A Sensor protein; KDPD, P 94.9 0.022 7.7E-07 60.6 5.3 34 833-868 9-42 (228)
253 1fnn_A CDC6P, cell division co 94.9 0.026 9E-07 62.7 6.1 35 832-867 46-80 (389)
254 1d2n_A N-ethylmaleimide-sensit 94.9 0.029 1E-06 60.0 6.2 24 192-215 64-87 (272)
255 4b4t_M 26S protease regulatory 94.8 0.015 5.1E-07 67.6 4.0 49 830-883 215-273 (434)
256 4b4t_M 26S protease regulatory 94.8 0.015 5.2E-07 67.5 4.0 50 176-230 183-248 (434)
257 4b4t_K 26S protease regulatory 94.8 0.016 5.3E-07 67.3 4.1 25 192-216 206-230 (428)
258 4b4t_K 26S protease regulatory 94.8 0.016 5.4E-07 67.3 4.0 49 830-883 206-264 (428)
259 2bjv_A PSP operon transcriptio 94.8 0.023 7.9E-07 60.5 5.1 26 191-216 28-53 (265)
260 1lv7_A FTSH; alpha/beta domain 94.7 0.023 8E-07 60.2 5.0 24 830-853 45-68 (257)
261 1xwi_A SKD1 protein; VPS4B, AA 94.7 0.021 7.2E-07 63.4 4.9 48 193-244 46-103 (322)
262 2r62_A Cell division protease 94.7 0.011 3.9E-07 62.9 2.6 24 193-216 45-68 (268)
263 3u61_B DNA polymerase accessor 94.7 0.035 1.2E-06 60.9 6.5 58 816-878 30-91 (324)
264 2w00_A HSDR, R.ECOR124I; ATP-b 94.7 0.026 8.8E-07 72.3 6.2 69 815-884 271-354 (1038)
265 3uk6_A RUVB-like 2; hexameric 94.7 0.022 7.4E-07 63.4 4.9 25 193-217 71-95 (368)
266 3u4q_B ATP-dependent helicase/ 94.7 0.03 1E-06 72.5 6.8 52 193-245 2-54 (1166)
267 3u4q_B ATP-dependent helicase/ 94.7 0.032 1.1E-06 72.3 7.0 52 831-883 2-54 (1166)
268 2zr9_A Protein RECA, recombina 94.7 0.027 9.2E-07 63.5 5.5 37 830-868 61-97 (349)
269 2w00_A HSDR, R.ECOR124I; ATP-b 94.6 0.025 8.6E-07 72.4 5.8 70 176-246 270-354 (1038)
270 1xx6_A Thymidine kinase; NESG, 94.6 0.031 1.1E-06 57.8 5.3 37 193-231 9-45 (191)
271 2r8r_A Sensor protein; KDPD, P 94.6 0.029 9.9E-07 59.8 5.2 33 195-229 9-41 (228)
272 1u94_A RECA protein, recombina 94.6 0.031 1.1E-06 63.2 5.8 37 830-868 63-99 (356)
273 1sxj_C Activator 1 40 kDa subu 94.6 0.026 8.9E-07 62.6 5.1 38 818-855 31-71 (340)
274 2chq_A Replication factor C sm 94.6 0.032 1.1E-06 60.2 5.6 41 178-218 21-64 (319)
275 4b4t_L 26S protease subunit RP 94.5 0.019 6.6E-07 66.8 4.0 49 830-883 215-273 (437)
276 1xx6_A Thymidine kinase; NESG, 94.5 0.035 1.2E-06 57.4 5.6 38 830-869 8-45 (191)
277 4b4t_L 26S protease subunit RP 94.5 0.019 6.6E-07 66.7 4.0 25 192-216 215-239 (437)
278 4b4t_J 26S protease regulatory 94.5 0.019 6.6E-07 66.1 3.8 49 830-883 182-240 (405)
279 3uk6_A RUVB-like 2; hexameric 94.5 0.024 8.4E-07 63.0 4.6 25 831-855 71-95 (368)
280 1lv7_A FTSH; alpha/beta domain 94.5 0.022 7.7E-07 60.3 4.1 24 192-215 45-68 (257)
281 1sxj_C Activator 1 40 kDa subu 94.5 0.027 9.1E-07 62.5 4.8 40 179-218 30-72 (340)
282 4b4t_J 26S protease regulatory 94.5 0.02 6.7E-07 66.0 3.8 25 192-216 182-206 (405)
283 4a15_A XPD helicase, ATP-depen 94.4 0.06 2.1E-06 65.2 8.2 66 816-883 4-74 (620)
284 1jr3_A DNA polymerase III subu 94.4 0.03 1E-06 62.0 5.3 39 179-217 21-63 (373)
285 2zr9_A Protein RECA, recombina 94.4 0.034 1.2E-06 62.7 5.7 39 192-232 61-99 (349)
286 1sxj_D Activator 1 41 kDa subu 94.4 0.032 1.1E-06 61.4 5.3 51 181-231 44-98 (353)
287 2z43_A DNA repair and recombin 94.4 0.029 1E-06 62.2 5.0 54 830-885 107-167 (324)
288 1nlf_A Regulatory protein REPA 94.4 0.044 1.5E-06 59.1 6.3 53 830-883 30-90 (279)
289 1iqp_A RFCS; clamp loader, ext 94.4 0.039 1.3E-06 59.8 5.9 40 817-856 30-72 (327)
290 3rc3_A ATP-dependent RNA helic 94.4 0.052 1.8E-06 66.5 7.6 55 187-247 150-204 (677)
291 1c4o_A DNA nucleotide excision 94.4 0.054 1.9E-06 66.2 7.8 66 813-883 6-76 (664)
292 4a1f_A DNAB helicase, replicat 94.4 0.067 2.3E-06 60.2 7.9 60 182-244 35-95 (338)
293 1vma_A Cell division protein F 94.4 0.032 1.1E-06 61.9 5.3 54 192-247 104-160 (306)
294 3cf0_A Transitional endoplasmi 94.4 0.019 6.6E-07 62.8 3.4 24 192-215 49-72 (301)
295 1xjc_A MOBB protein homolog; s 94.4 0.044 1.5E-06 55.7 5.8 40 831-872 5-44 (169)
296 2chq_A Replication factor C sm 94.3 0.037 1.3E-06 59.8 5.5 40 817-856 22-64 (319)
297 1u94_A RECA protein, recombina 94.3 0.037 1.3E-06 62.6 5.7 38 192-231 63-100 (356)
298 1sxj_D Activator 1 41 kDa subu 94.3 0.034 1.2E-06 61.2 5.2 37 820-856 45-84 (353)
299 3hr8_A Protein RECA; alpha and 94.3 0.03 1E-06 63.5 4.9 39 192-232 61-99 (356)
300 3bgw_A DNAB-like replicative h 94.3 0.038 1.3E-06 64.3 5.9 59 821-882 187-246 (444)
301 1d2n_A N-ethylmaleimide-sensit 94.3 0.021 7.3E-07 61.1 3.5 24 830-853 64-87 (272)
302 1qhx_A CPT, protein (chloramph 94.3 0.023 8E-07 56.4 3.6 24 192-215 3-26 (178)
303 1xjc_A MOBB protein homolog; s 94.3 0.044 1.5E-06 55.8 5.6 40 193-234 5-44 (169)
304 2r44_A Uncharacterized protein 94.3 0.02 6.8E-07 63.1 3.3 34 820-853 35-69 (331)
305 3hr8_A Protein RECA; alpha and 94.3 0.029 9.9E-07 63.6 4.6 37 830-868 61-97 (356)
306 1um8_A ATP-dependent CLP prote 94.2 0.03 1E-06 63.0 4.8 25 192-216 72-96 (376)
307 3cf0_A Transitional endoplasmi 94.2 0.021 7.3E-07 62.5 3.3 24 830-853 49-72 (301)
308 2cvh_A DNA repair and recombin 94.2 0.033 1.1E-06 57.0 4.5 35 830-869 20-54 (220)
309 2j37_W Signal recognition part 94.2 0.058 2E-06 63.8 7.2 44 831-876 102-148 (504)
310 3cpe_A Terminase, DNA packagin 94.2 0.095 3.3E-06 63.0 9.2 71 812-882 160-230 (592)
311 1jr3_A DNA polymerase III subu 94.2 0.037 1.3E-06 61.4 5.2 38 818-855 22-63 (373)
312 3rc3_A ATP-dependent RNA helic 94.2 0.077 2.6E-06 65.0 8.4 59 822-886 147-205 (677)
313 2cvh_A DNA repair and recombin 94.2 0.04 1.4E-06 56.3 5.2 34 192-230 20-53 (220)
314 2r44_A Uncharacterized protein 94.2 0.018 6.3E-07 63.4 2.7 37 180-216 33-70 (331)
315 1hqc_A RUVB; extended AAA-ATPa 94.2 0.051 1.7E-06 59.2 6.2 25 192-216 38-62 (324)
316 2px0_A Flagellar biosynthesis 94.2 0.044 1.5E-06 60.4 5.7 38 192-230 105-142 (296)
317 3d8b_A Fidgetin-like protein 1 94.1 0.039 1.3E-06 62.0 5.4 24 192-215 117-140 (357)
318 1xp8_A RECA protein, recombina 94.1 0.041 1.4E-06 62.6 5.5 38 830-869 74-111 (366)
319 1xwi_A SKD1 protein; VPS4B, AA 94.1 0.022 7.7E-07 63.2 3.3 48 831-882 46-103 (322)
320 3pvs_A Replication-associated 94.1 0.055 1.9E-06 63.0 6.7 23 193-215 51-73 (447)
321 4a1f_A DNAB helicase, replicat 94.1 0.052 1.8E-06 61.1 6.3 60 820-882 35-95 (338)
322 2zan_A Vacuolar protein sortin 94.1 0.049 1.7E-06 63.2 6.3 25 192-216 167-191 (444)
323 1p9r_A General secretion pathw 94.1 0.042 1.5E-06 63.5 5.7 54 174-229 147-202 (418)
324 2x8a_A Nuclear valosin-contain 94.1 0.022 7.6E-07 61.8 3.1 20 195-214 47-66 (274)
325 2v3c_C SRP54, signal recogniti 94.1 0.028 9.7E-07 65.2 4.2 35 193-229 100-134 (432)
326 2r6a_A DNAB helicase, replicat 94.1 0.076 2.6E-06 61.7 7.8 59 821-881 193-252 (454)
327 1qhx_A CPT, protein (chloramph 94.1 0.027 9.3E-07 55.9 3.5 24 830-853 3-26 (178)
328 2v3c_C SRP54, signal recogniti 94.0 0.027 9.2E-07 65.4 3.9 35 831-867 100-134 (432)
329 2vhj_A Ntpase P4, P4; non- hyd 94.0 0.025 8.7E-07 63.3 3.5 24 830-853 123-146 (331)
330 1in4_A RUVB, holliday junction 94.0 0.029 9.9E-07 62.4 4.0 24 193-216 52-75 (334)
331 1sxj_A Activator 1 95 kDa subu 94.0 0.046 1.6E-06 64.6 5.9 24 193-216 78-101 (516)
332 3kb2_A SPBC2 prophage-derived 94.0 0.03 1E-06 54.9 3.7 23 194-216 3-25 (173)
333 3vfd_A Spastin; ATPase, microt 94.0 0.043 1.5E-06 62.2 5.4 37 178-214 119-170 (389)
334 1n0w_A DNA repair protein RAD5 94.0 0.044 1.5E-06 56.9 5.1 41 830-870 24-68 (243)
335 2j37_W Signal recognition part 94.0 0.058 2E-06 63.9 6.6 53 193-247 102-157 (504)
336 2ehv_A Hypothetical protein PH 94.0 0.071 2.4E-06 55.5 6.7 51 830-883 30-81 (251)
337 3cpe_A Terminase, DNA packagin 94.0 0.12 4.1E-06 62.2 9.4 69 176-244 162-230 (592)
338 2px0_A Flagellar biosynthesis 94.0 0.046 1.6E-06 60.2 5.4 55 830-885 105-162 (296)
339 3crv_A XPD/RAD3 related DNA he 94.0 0.073 2.5E-06 63.4 7.5 64 177-245 3-70 (551)
340 4b4t_I 26S protease regulatory 93.9 0.03 1E-06 64.9 4.0 25 192-216 216-240 (437)
341 4b4t_I 26S protease regulatory 93.9 0.03 1E-06 64.9 3.9 49 830-883 216-274 (437)
342 1j8m_F SRP54, signal recogniti 93.9 0.08 2.7E-06 58.3 7.3 54 830-885 98-154 (297)
343 1kht_A Adenylate kinase; phosp 93.9 0.036 1.2E-06 55.3 4.1 26 192-217 3-28 (192)
344 1sxj_E Activator 1 40 kDa subu 93.9 0.042 1.4E-06 60.7 5.0 42 178-219 18-63 (354)
345 1xp8_A RECA protein, recombina 93.9 0.049 1.7E-06 61.9 5.7 39 192-232 74-112 (366)
346 1cr0_A DNA primase/helicase; R 93.9 0.062 2.1E-06 58.3 6.3 57 823-881 27-84 (296)
347 1um8_A ATP-dependent CLP prote 93.9 0.041 1.4E-06 61.9 4.9 25 830-854 72-96 (376)
348 1hqc_A RUVB; extended AAA-ATPa 93.9 0.063 2.2E-06 58.4 6.2 25 830-854 38-62 (324)
349 1n0w_A DNA repair protein RAD5 93.9 0.049 1.7E-06 56.6 5.1 40 192-231 24-67 (243)
350 1in4_A RUVB, holliday junction 93.8 0.037 1.3E-06 61.5 4.4 24 831-854 52-75 (334)
351 1cr0_A DNA primase/helicase; R 93.8 0.077 2.6E-06 57.5 6.8 56 186-243 28-84 (296)
352 4b4t_H 26S protease regulatory 93.8 0.029 1E-06 65.5 3.6 49 830-883 243-301 (467)
353 2ehv_A Hypothetical protein PH 93.8 0.091 3.1E-06 54.7 7.1 52 192-246 30-82 (251)
354 3d8b_A Fidgetin-like protein 1 93.8 0.048 1.6E-06 61.2 5.3 24 830-853 117-140 (357)
355 1kht_A Adenylate kinase; phosp 93.8 0.038 1.3E-06 55.1 4.0 26 830-855 3-28 (192)
356 1ly1_A Polynucleotide kinase; 93.8 0.029 1E-06 55.4 3.1 22 193-214 3-24 (181)
357 3pvs_A Replication-associated 93.8 0.068 2.3E-06 62.2 6.7 23 831-853 51-73 (447)
358 3lw7_A Adenylate kinase relate 93.8 0.031 1.1E-06 54.4 3.2 20 193-212 2-21 (179)
359 3pfi_A Holliday junction ATP-d 93.8 0.033 1.1E-06 61.3 3.8 23 831-853 56-78 (338)
360 3pfi_A Holliday junction ATP-d 93.8 0.042 1.5E-06 60.4 4.7 23 193-215 56-78 (338)
361 2qp9_X Vacuolar protein sortin 93.8 0.034 1.2E-06 62.6 3.9 24 193-216 85-108 (355)
362 1c4o_A DNA nucleotide excision 93.8 0.093 3.2E-06 64.1 8.1 65 176-245 7-76 (664)
363 3bgw_A DNAB-like replicative h 93.8 0.052 1.8E-06 63.2 5.6 59 183-244 187-246 (444)
364 1q57_A DNA primase/helicase; d 93.7 0.048 1.7E-06 64.1 5.3 55 826-882 237-292 (503)
365 1g8p_A Magnesium-chelatase 38 93.7 0.025 8.7E-07 62.2 2.8 25 192-216 45-69 (350)
366 2vhj_A Ntpase P4, P4; non- hyd 93.7 0.03 1E-06 62.7 3.3 24 192-215 123-146 (331)
367 3kb2_A SPBC2 prophage-derived 93.7 0.037 1.3E-06 54.2 3.6 23 832-854 3-25 (173)
368 2c9o_A RUVB-like 1; hexameric 93.7 0.045 1.5E-06 63.6 4.9 25 830-854 63-87 (456)
369 2r6a_A DNAB helicase, replicat 93.7 0.074 2.5E-06 61.8 6.7 59 183-243 193-252 (454)
370 1sxj_A Activator 1 95 kDa subu 93.7 0.04 1.4E-06 65.1 4.5 24 831-854 78-101 (516)
371 3vfd_A Spastin; ATPase, microt 93.7 0.052 1.8E-06 61.5 5.3 24 830-853 148-171 (389)
372 4b4t_H 26S protease regulatory 93.7 0.03 1E-06 65.4 3.4 39 178-216 213-267 (467)
373 1g8p_A Magnesium-chelatase 38 93.6 0.032 1.1E-06 61.4 3.4 25 830-854 45-69 (350)
374 1nks_A Adenylate kinase; therm 93.6 0.039 1.3E-06 55.0 3.7 33 194-228 3-35 (194)
375 1p9r_A General secretion pathw 93.6 0.066 2.2E-06 61.9 6.1 52 814-867 149-202 (418)
376 1yrb_A ATP(GTP)binding protein 93.6 0.05 1.7E-06 57.4 4.7 37 190-229 12-48 (262)
377 1j8m_F SRP54, signal recogniti 93.6 0.084 2.9E-06 58.2 6.6 54 192-247 98-154 (297)
378 2c9o_A RUVB-like 1; hexameric 93.6 0.049 1.7E-06 63.3 5.0 25 192-216 63-87 (456)
379 2qp9_X Vacuolar protein sortin 93.6 0.037 1.3E-06 62.3 3.8 24 831-854 85-108 (355)
380 1sxj_B Activator 1 37 kDa subu 93.6 0.052 1.8E-06 58.7 4.8 39 180-218 27-68 (323)
381 3mwy_W Chromo domain-containin 93.6 0.16 5.5E-06 63.2 9.8 82 173-256 232-318 (800)
382 1zu4_A FTSY; GTPase, signal re 93.6 0.059 2E-06 60.0 5.4 37 830-868 105-141 (320)
383 1ixz_A ATP-dependent metallopr 93.5 0.032 1.1E-06 59.0 3.0 21 195-215 52-72 (254)
384 2q6t_A DNAB replication FORK h 93.5 0.072 2.5E-06 61.7 6.2 59 821-881 190-249 (444)
385 2fna_A Conserved hypothetical 93.5 0.066 2.3E-06 58.4 5.6 36 180-216 19-54 (357)
386 1w5s_A Origin recognition comp 93.5 0.053 1.8E-06 60.8 5.0 27 830-856 50-78 (412)
387 1w5s_A Origin recognition comp 93.5 0.04 1.4E-06 61.9 3.9 28 191-218 49-78 (412)
388 1zu4_A FTSY; GTPase, signal re 93.5 0.06 2.1E-06 60.0 5.3 36 192-229 105-140 (320)
389 1nlf_A Regulatory protein REPA 93.5 0.088 3E-06 56.7 6.4 52 192-244 30-89 (279)
390 1v5w_A DMC1, meiotic recombina 93.5 0.054 1.8E-06 60.7 4.9 56 830-885 122-182 (343)
391 2zan_A Vacuolar protein sortin 93.5 0.05 1.7E-06 63.1 4.7 25 830-854 167-191 (444)
392 2q6t_A DNAB replication FORK h 93.4 0.088 3E-06 61.0 6.8 59 183-243 190-249 (444)
393 1ly1_A Polynucleotide kinase; 93.4 0.038 1.3E-06 54.5 3.2 22 831-852 3-24 (181)
394 3trf_A Shikimate kinase, SK; a 93.4 0.05 1.7E-06 54.4 4.0 25 192-216 5-29 (185)
395 1sxj_E Activator 1 40 kDa subu 93.4 0.055 1.9E-06 59.8 4.7 40 817-856 19-62 (354)
396 3lw7_A Adenylate kinase relate 93.3 0.04 1.4E-06 53.6 3.2 20 831-850 2-21 (179)
397 1gvn_B Zeta; postsegregational 93.3 0.072 2.5E-06 58.2 5.5 24 192-215 33-56 (287)
398 2rhm_A Putative kinase; P-loop 93.3 0.043 1.5E-06 54.9 3.4 25 192-216 5-29 (193)
399 1nks_A Adenylate kinase; therm 93.3 0.07 2.4E-06 53.1 4.9 33 832-866 3-35 (194)
400 1a5t_A Delta prime, HOLB; zinc 93.3 0.062 2.1E-06 59.7 5.0 28 192-219 24-51 (334)
401 1ixz_A ATP-dependent metallopr 93.3 0.037 1.3E-06 58.5 3.1 21 833-853 52-72 (254)
402 2xxa_A Signal recognition part 93.3 0.067 2.3E-06 62.1 5.4 46 830-877 100-149 (433)
403 2o0j_A Terminase, DNA packagin 93.3 0.18 6.2E-06 57.7 8.9 70 813-882 161-230 (385)
404 1v5w_A DMC1, meiotic recombina 93.3 0.066 2.3E-06 60.0 5.2 56 192-247 122-182 (343)
405 2plr_A DTMP kinase, probable t 93.3 0.049 1.7E-06 55.3 3.7 26 192-217 4-29 (213)
406 1tev_A UMP-CMP kinase; ploop, 93.2 0.046 1.6E-06 54.6 3.5 25 192-216 3-27 (196)
407 3crv_A XPD/RAD3 related DNA he 93.2 0.12 4.1E-06 61.5 7.7 64 815-883 3-70 (551)
408 1sxj_B Activator 1 37 kDa subu 93.2 0.061 2.1E-06 58.1 4.6 37 820-856 29-68 (323)
409 2z43_A DNA repair and recombin 93.2 0.082 2.8E-06 58.6 5.7 56 192-247 107-167 (324)
410 2x8a_A Nuclear valosin-contain 93.2 0.039 1.3E-06 59.9 3.0 21 832-852 46-66 (274)
411 2o0j_A Terminase, DNA packagin 93.1 0.24 8.1E-06 56.7 9.5 68 176-243 162-229 (385)
412 1tev_A UMP-CMP kinase; ploop, 93.1 0.051 1.7E-06 54.3 3.5 24 830-853 3-26 (196)
413 3p32_A Probable GTPase RV1496/ 93.1 0.078 2.7E-06 59.6 5.4 37 830-868 79-115 (355)
414 2plr_A DTMP kinase, probable t 93.1 0.053 1.8E-06 55.0 3.7 27 829-855 3-29 (213)
415 3trf_A Shikimate kinase, SK; a 93.0 0.059 2E-06 53.8 4.0 25 830-854 5-29 (185)
416 2fna_A Conserved hypothetical 93.0 0.08 2.7E-06 57.7 5.3 36 818-854 19-54 (357)
417 3iij_A Coilin-interacting nucl 93.0 0.065 2.2E-06 53.5 4.2 25 192-216 11-35 (180)
418 2yvu_A Probable adenylyl-sulfa 93.0 0.092 3.2E-06 52.7 5.3 35 192-228 13-47 (186)
419 2z0h_A DTMP kinase, thymidylat 92.9 0.094 3.2E-06 52.6 5.3 32 194-227 2-33 (197)
420 2yvu_A Probable adenylyl-sulfa 92.9 0.093 3.2E-06 52.7 5.2 36 830-867 13-48 (186)
421 3a4m_A L-seryl-tRNA(SEC) kinas 92.9 0.089 3E-06 56.3 5.3 36 192-229 4-39 (260)
422 1a5t_A Delta prime, HOLB; zinc 92.9 0.074 2.5E-06 59.1 4.8 27 830-856 24-50 (334)
423 1iy2_A ATP-dependent metallopr 92.9 0.046 1.6E-06 58.8 3.0 21 195-215 76-96 (278)
424 2rhm_A Putative kinase; P-loop 92.8 0.052 1.8E-06 54.4 3.2 25 830-854 5-29 (193)
425 2z0h_A DTMP kinase, thymidylat 92.8 0.1 3.6E-06 52.3 5.4 33 832-866 2-34 (197)
426 3p32_A Probable GTPase RV1496/ 92.8 0.086 2.9E-06 59.2 5.3 37 192-230 79-115 (355)
427 1ojl_A Transcriptional regulat 92.8 0.067 2.3E-06 58.9 4.3 24 830-853 25-48 (304)
428 1zp6_A Hypothetical protein AT 92.7 0.054 1.9E-06 54.3 3.1 23 192-214 9-31 (191)
429 2i1q_A DNA repair and recombin 92.7 0.052 1.8E-06 59.8 3.2 56 830-885 98-168 (322)
430 3vaa_A Shikimate kinase, SK; s 92.6 0.073 2.5E-06 54.3 4.1 25 192-216 25-49 (199)
431 1z3i_X Similar to RAD54-like; 92.6 0.27 9.1E-06 59.7 9.6 68 815-883 55-136 (644)
432 1u0j_A DNA replication protein 92.6 0.066 2.2E-06 58.4 3.8 23 193-215 105-127 (267)
433 1kag_A SKI, shikimate kinase I 92.6 0.063 2.2E-06 52.9 3.4 22 193-214 5-26 (173)
434 3a4m_A L-seryl-tRNA(SEC) kinas 92.6 0.11 3.7E-06 55.7 5.4 35 830-866 4-38 (260)
435 3iij_A Coilin-interacting nucl 92.6 0.075 2.6E-06 53.0 4.0 26 829-854 10-35 (180)
436 1q57_A DNA primase/helicase; d 92.6 0.079 2.7E-06 62.2 4.7 55 188-244 237-292 (503)
437 2c95_A Adenylate kinase 1; tra 92.6 0.074 2.5E-06 53.4 3.9 26 191-216 8-33 (196)
438 2ze6_A Isopentenyl transferase 92.6 0.066 2.3E-06 57.3 3.7 23 194-216 3-25 (253)
439 1iy2_A ATP-dependent metallopr 92.5 0.055 1.9E-06 58.3 3.1 21 833-853 76-96 (278)
440 3nbx_X ATPase RAVA; AAA+ ATPas 92.5 0.051 1.7E-06 64.3 3.0 34 182-215 30-64 (500)
441 1yrb_A ATP(GTP)binding protein 92.5 0.091 3.1E-06 55.4 4.7 37 828-867 12-48 (262)
442 2iyv_A Shikimate kinase, SK; t 92.5 0.075 2.6E-06 53.1 3.8 24 193-216 3-26 (184)
443 1ojl_A Transcriptional regulat 92.5 0.094 3.2E-06 57.7 4.9 25 191-215 24-48 (304)
444 1np6_A Molybdopterin-guanine d 92.5 0.13 4.6E-06 52.2 5.7 39 830-870 6-44 (174)
445 3nbx_X ATPase RAVA; AAA+ ATPas 92.5 0.057 1.9E-06 63.9 3.3 26 828-853 39-64 (500)
446 2bwj_A Adenylate kinase 5; pho 92.4 0.079 2.7E-06 53.3 3.9 25 192-216 12-36 (199)
447 3mwy_W Chromo domain-containin 92.4 0.29 9.9E-06 60.9 9.7 70 814-884 235-309 (800)
448 3vaa_A Shikimate kinase, SK; s 92.4 0.081 2.8E-06 54.0 4.0 25 830-854 25-49 (199)
449 3cm0_A Adenylate kinase; ATP-b 92.4 0.077 2.6E-06 52.9 3.8 23 194-216 6-28 (186)
450 1via_A Shikimate kinase; struc 92.3 0.076 2.6E-06 52.8 3.6 23 194-216 6-28 (175)
451 3t61_A Gluconokinase; PSI-biol 92.3 0.079 2.7E-06 53.9 3.8 25 192-216 18-42 (202)
452 1kag_A SKI, shikimate kinase I 92.3 0.07 2.4E-06 52.6 3.3 23 830-852 4-26 (173)
453 1u0j_A DNA replication protein 92.3 0.11 3.6E-06 56.8 4.9 23 831-853 105-127 (267)
454 2qor_A Guanylate kinase; phosp 92.2 0.072 2.5E-06 54.6 3.4 26 191-216 11-36 (204)
455 2j9r_A Thymidine kinase; TK1, 92.2 0.15 5E-06 53.9 5.8 37 193-231 29-65 (214)
456 3pxg_A Negative regulator of g 92.2 0.11 3.9E-06 60.5 5.4 39 180-218 186-227 (468)
457 2pbr_A DTMP kinase, thymidylat 92.2 0.14 4.8E-06 51.1 5.4 25 194-218 2-26 (195)
458 2ze6_A Isopentenyl transferase 92.2 0.079 2.7E-06 56.7 3.7 23 832-854 3-25 (253)
459 1np6_A Molybdopterin-guanine d 92.2 0.14 4.8E-06 52.0 5.4 38 192-231 6-43 (174)
460 3e70_C DPA, signal recognition 92.2 0.12 4E-06 57.9 5.2 54 192-247 129-185 (328)
461 2cdn_A Adenylate kinase; phosp 92.2 0.082 2.8E-06 53.8 3.7 25 192-216 20-44 (201)
462 4eun_A Thermoresistant glucoki 92.2 0.092 3.1E-06 53.6 4.1 25 192-216 29-53 (200)
463 1qf9_A UMP/CMP kinase, protein 92.1 0.084 2.9E-06 52.5 3.7 23 193-215 7-29 (194)
464 2jaq_A Deoxyguanosine kinase; 92.1 0.087 3E-06 53.0 3.8 23 194-216 2-24 (205)
465 2i1q_A DNA repair and recombin 92.1 0.087 3E-06 58.0 4.1 56 192-247 98-168 (322)
466 2c95_A Adenylate kinase 1; tra 92.1 0.087 3E-06 52.8 3.7 25 830-854 9-33 (196)
467 1zp6_A Hypothetical protein AT 92.1 0.065 2.2E-06 53.7 2.8 23 830-852 9-31 (191)
468 3e70_C DPA, signal recognition 92.1 0.13 4.4E-06 57.6 5.4 54 830-885 129-185 (328)
469 3o8b_A HCV NS3 protease/helica 92.1 0.045 1.5E-06 66.8 1.9 49 191-244 231-279 (666)
470 1nn5_A Similar to deoxythymidy 92.0 0.095 3.3E-06 53.3 4.0 35 192-228 9-43 (215)
471 3bs4_A Uncharacterized protein 92.0 0.15 5.1E-06 55.4 5.6 54 192-248 21-74 (260)
472 3fb4_A Adenylate kinase; psych 92.0 0.085 2.9E-06 54.1 3.6 22 195-216 3-24 (216)
473 1gvn_B Zeta; postsegregational 91.9 0.068 2.3E-06 58.4 2.9 24 830-853 33-56 (287)
474 2iyv_A Shikimate kinase, SK; t 91.9 0.094 3.2E-06 52.4 3.7 23 831-853 3-25 (184)
475 3bs4_A Uncharacterized protein 91.9 0.11 3.8E-06 56.4 4.5 58 830-890 21-78 (260)
476 2d7d_A Uvrabc system protein B 91.9 0.26 8.8E-06 60.2 8.3 68 811-883 8-80 (661)
477 3pxg_A Negative regulator of g 91.9 0.17 5.7E-06 59.1 6.4 39 818-856 186-227 (468)
478 2bwj_A Adenylate kinase 5; pho 91.9 0.096 3.3E-06 52.6 3.7 25 830-854 12-36 (199)
479 4eun_A Thermoresistant glucoki 91.8 0.1 3.5E-06 53.2 4.0 25 830-854 29-53 (200)
480 3cm0_A Adenylate kinase; ATP-b 91.8 0.097 3.3E-06 52.2 3.7 23 831-853 5-27 (186)
481 2qen_A Walker-type ATPase; unk 91.8 0.12 4.2E-06 56.2 4.8 36 818-853 18-54 (350)
482 2wwf_A Thymidilate kinase, put 91.8 0.1 3.5E-06 53.1 3.9 27 192-218 10-36 (212)
483 3b9q_A Chloroplast SRP recepto 91.8 0.14 4.6E-06 56.6 5.2 46 192-239 100-148 (302)
484 2pbr_A DTMP kinase, thymidylat 91.8 0.17 5.7E-06 50.5 5.4 32 832-865 2-33 (195)
485 1via_A Shikimate kinase; struc 91.7 0.096 3.3E-06 52.0 3.6 23 832-854 6-28 (175)
486 1knq_A Gluconate kinase; ALFA/ 91.7 0.1 3.5E-06 51.7 3.8 23 193-215 9-31 (175)
487 1rj9_A FTSY, signal recognitio 91.7 0.14 4.9E-06 56.5 5.3 37 192-230 102-138 (304)
488 1rj9_A FTSY, signal recognitio 91.7 0.15 5.1E-06 56.4 5.4 37 830-868 102-138 (304)
489 3t61_A Gluconokinase; PSI-biol 91.7 0.1 3.4E-06 53.2 3.7 25 830-854 18-42 (202)
490 1z3i_X Similar to RAD54-like; 91.7 0.36 1.2E-05 58.6 9.2 69 176-245 54-136 (644)
491 2xxa_A Signal recognition part 91.7 0.14 4.7E-06 59.5 5.3 47 192-239 100-149 (433)
492 1e6c_A Shikimate kinase; phosp 91.7 0.099 3.4E-06 51.4 3.6 23 194-216 4-26 (173)
493 1zak_A Adenylate kinase; ATP:A 91.7 0.11 3.7E-06 53.8 4.0 25 192-216 5-29 (222)
494 1g41_A Heat shock protein HSLU 91.7 0.12 4.2E-06 60.2 4.8 25 192-216 50-74 (444)
495 2cdn_A Adenylate kinase; phosp 91.7 0.11 3.8E-06 52.8 4.0 24 831-854 21-44 (201)
496 3hu3_A Transitional endoplasmi 91.7 0.16 5.3E-06 59.9 5.7 23 192-214 238-260 (489)
497 3umf_A Adenylate kinase; rossm 91.7 0.096 3.3E-06 55.2 3.6 25 192-216 29-53 (217)
498 1nn5_A Similar to deoxythymidy 91.6 0.17 5.9E-06 51.4 5.4 35 830-866 9-43 (215)
499 2qen_A Walker-type ATPase; unk 91.6 0.12 4.1E-06 56.2 4.5 36 180-215 18-54 (350)
500 3tau_A Guanylate kinase, GMP k 91.6 0.1 3.5E-06 53.8 3.7 24 192-215 8-31 (208)
No 1
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=99.88 E-value=1.2e-22 Score=247.01 Aligned_cols=149 Identities=22% Similarity=0.224 Sum_probs=112.6
Q ss_pred CcceEEEEEeechhhhHHHHHHHhhhhhccccc-CCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhcC-
Q psy12659 114 PRQAIIIGFLLIQVLKKRTEEEENEDEDVEMEN-KDGKPIITVEPHVIPSRGPYLFNEPRKNTIPFTPTQIEAIRAGMQ- 191 (1051)
Q Consensus 114 ~~~~~~i~~l~~~~~~~R~~~Al~~l~~~~~~~-~~l~~~l~~~~~~~~~~~p~~~~~~~~~~~~ln~~Q~~Ai~~~l~- 191 (1051)
....|.+.++.+..+++|++.|++.+....... ..+..++.......+.....+ .......||++|++||..+++
T Consensus 128 ~~~~~~~~~~~~~~~~~r~~~al~~l~~~~~~~~~~l~~~l~~~~~p~~~~~~~~---~~~~~~~LN~~Q~~AV~~al~~ 204 (646)
T 4b3f_X 128 RENSYRLLKLANDVTYRRLKKALIALKKYHSGPASSLIEVLFGRSAPSPASEIHP---LTFFNTCLDTSQKEAVLFALSQ 204 (646)
T ss_dssp SSCCEEEEEECCHHHHHHHHHHHHHHHTCCSSTTHHHHHHHTTSSCCCCCCCCCC---CCCSSTTCCHHHHHHHHHHHHC
T ss_pred CCCcEEEEEeccchHHHHHHHHHHHhhhcccCchHHHHHHHcCCCCCCCccccCc---ccccCCCCCHHHHHHHHHHhcC
Confidence 445689999999999999999999887532211 112223332221111111111 111234799999999999985
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCcEEEecCCccccchhhhhcc
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLDVDERHLLRLGHGEEALETEKDFSR 270 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~~~~~~~~lvRlG~~~~~~~~~~~fs~ 270 (1051)
++++|||||||||||+|++++|.+++++ +.+||||||||.|||++++||...+. .++|+|+..+..+....++.
T Consensus 205 ~~~~lI~GPPGTGKT~ti~~~I~~l~~~--~~~ILv~a~TN~AvD~i~erL~~~~~---~ilRlG~~~r~~~~~~~~~l 278 (646)
T 4b3f_X 205 KELAIIHGPPGTGKTTTVVEIILQAVKQ--GLKVLCCAPSNIAVDNLVERLALCKQ---RILRLGHPARLLESIQQHSL 278 (646)
T ss_dssp SSEEEEECCTTSCHHHHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHHHHTTC---CEEECSCCSSCCHHHHTTBH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEcCchHHHHHHHHHHHhcCC---ceEEecchhhhhhhhhhhhH
Confidence 7899999999999999999999999987 78999999999999999999998766 79999999888766665554
No 2
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=99.72 E-value=6.2e-17 Score=196.20 Aligned_cols=139 Identities=23% Similarity=0.269 Sum_probs=103.5
Q ss_pred ceEEEEEeechhhhHHHHHHHhhhhhcccccCC-CCCccccCCC---CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhcC
Q psy12659 116 QAIIIGFLLIQVLKKRTEEEENEDEDVEMENKD-GKPIITVEPH---VIPSRGPYLFNEPRKNTIPFTPTQIEAIRAGMQ 191 (1051)
Q Consensus 116 ~~~~i~~l~~~~~~~R~~~Al~~l~~~~~~~~~-l~~~l~~~~~---~~~~~~p~~~~~~~~~~~~ln~~Q~~Ai~~~l~ 191 (1051)
..+.+.++++.++++|+..||+.+......... +...+..... ......|..+ .......||++|++||..++.
T Consensus 117 ~~~~~~~~~~~~~~~r~~~al~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~--~~~~~~~ln~~Q~~av~~~l~ 194 (624)
T 2gk6_A 117 HNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRF--TAQGLPDLNHSQVYAVKTVLQ 194 (624)
T ss_dssp SSEEEEECCCCHHHHHHHHHHHHHHHCTTSBCSHHHHHHTTCCCCCCCCCCCCCSCC--SCTTSCCCCHHHHHHHHHHHT
T ss_pred cceEEEEEeCCchHHHHHHHHHHHHhccccchHHHHHHhcCCCCccccccccCcccc--cccccCCCCHHHHHHHHHHhc
Confidence 358999999999999999999988755322111 1111111100 0111111111 112235799999999999999
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCcEEEecCCcc
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLDVDERHLLRLGHGEE 260 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~~~~~~~~lvRlG~~~~ 260 (1051)
.++++|+||||||||+|++.++.+++.. ++.+||+|||||.|+|++.+++.+.++ .++|+|+..+
T Consensus 195 ~~~~li~GppGTGKT~~~~~~i~~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~~~~---~~~R~~~~~r 259 (624)
T 2gk6_A 195 RPLSLIQGPPGTGKTVTSATIVYHLARQ-GNGPVLVCAPSNIAVDQLTEKIHQTGL---KVVRLCAKSR 259 (624)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHTS-SSCCEEEEESSHHHHHHHHHHHHTTTC---CEEECCCTGG
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCcHHHHHHHHHHHHhcCC---eEEeeccccc
Confidence 9999999999999999999999998863 478999999999999999999998876 6999998755
No 3
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.71 E-value=9.4e-17 Score=199.47 Aligned_cols=141 Identities=22% Similarity=0.200 Sum_probs=102.8
Q ss_pred ceEEEEEeechhhhHHHHHHHhhhhhcccccC-CCCCccccCCCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHhcCCC
Q psy12659 116 QAIIIGFLLIQVLKKRTEEEENEDEDVEMENK-DGKPIITVEPHVI-PSRGPYLFNEPRKNTIPFTPTQIEAIRAGMQPG 193 (1051)
Q Consensus 116 ~~~~i~~l~~~~~~~R~~~Al~~l~~~~~~~~-~l~~~l~~~~~~~-~~~~p~~~~~~~~~~~~ln~~Q~~Ai~~~l~~~ 193 (1051)
..+.+.++++.++++|+..|++.+........ .+.+.+....... +.....+..........||++|++||..+++.+
T Consensus 297 ~~~~v~~~~~~~~~~r~~~AL~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~lp~~~~~~~~~~Ln~~Q~~Av~~~l~~~ 376 (802)
T 2xzl_A 297 TGFTAEFIWKGTSYDRMQDALKKFAIDKKSISGYLYYKILGHQVVDISFDVPLPKEFSIPNFAQLNSSQSNAVSHVLQRP 376 (802)
T ss_dssp SSEEEEECCCCHHHHHHHHHHHHHHHCTTSBCHHHHHHHHTCCCCCCCCCCCCCSCCSCTTSCCCCHHHHHHHHHHTTCS
T ss_pred CCeEEEEEecCchHHHHHHHHHHHHhccccchhHHHHHhcCCccccccccccCcccccccccccCCHHHHHHHHHHhcCC
Confidence 34889999999999999999998864432111 1111111111100 000011111111223579999999999999999
Q ss_pred eEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCcEEEecCCcc
Q psy12659 194 LTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLDVDERHLLRLGHGEE 260 (1051)
Q Consensus 194 ~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~~~~~~~~lvRlG~~~~ 260 (1051)
+++|+||||||||+|++.++..++.. ++.+||+|||||.|+|++.+||.+.++ .++|+|+..+
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~l~~~-~~~~ILv~a~tn~A~d~l~~rL~~~g~---~ilR~g~~~r 439 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYHLSKI-HKDRILVCAPSNVAVDHLAAKLRDLGL---KVVRLTAKSR 439 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSHHHHHHHHHHHHHTTC---CEEECCCGGG
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhC-CCCeEEEEcCcHHHHHHHHHHHHhhCc---cEEeecccch
Confidence 99999999999999999999998874 378999999999999999999999876 6999998654
No 4
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=99.67 E-value=7.7e-16 Score=191.18 Aligned_cols=139 Identities=23% Similarity=0.261 Sum_probs=103.1
Q ss_pred ceEEEEEeechhhhHHHHHHHhhhhhcccccC-CCCCccccC---CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhcC
Q psy12659 116 QAIIIGFLLIQVLKKRTEEEENEDEDVEMENK-DGKPIITVE---PHVIPSRGPYLFNEPRKNTIPFTPTQIEAIRAGMQ 191 (1051)
Q Consensus 116 ~~~~i~~l~~~~~~~R~~~Al~~l~~~~~~~~-~l~~~l~~~---~~~~~~~~p~~~~~~~~~~~~ln~~Q~~Ai~~~l~ 191 (1051)
..+.+.++++..+++|+..||..+...+.... .+...+... +.......|..+ .......||++|++||..+++
T Consensus 293 ~~~~v~~~~~~~~~~r~~~aL~~~~~~e~~~~~~l~~~ll~~~~~~~~~~~~l~~~~--~~~~~~~Ln~~Q~~Av~~~l~ 370 (800)
T 2wjy_A 293 HNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRF--TAQGLPDLNHSQVYAVKTVLQ 370 (800)
T ss_dssp SCEEEEECCCCHHHHHHHHHHHHHHHCTTSBCHHHHHHHTTCCCCCCCCCCCCCSCC--SCTTSCCCCHHHHHHHHHHHT
T ss_pred CCceEEEeecCChHHHHHHHHHHHHHhhcchhHHHHHHhcCCCCCchhhcccCcccc--ccccccCCCHHHHHHHHHhcc
Confidence 34889999999999999999998875432111 111111111 011111111111 112345799999999999999
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCcEEEecCCcc
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLDVDERHLLRLGHGEE 260 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~~~~~~~~lvRlG~~~~ 260 (1051)
.++++|+||||||||+|++.++..++.. ++.+||+|||||.|+|++.+++.+.++ .++|+|+..+
T Consensus 371 ~~~~lI~GppGTGKT~ti~~~i~~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~~g~---~vvRlg~~~r 435 (800)
T 2wjy_A 371 RPLSLIQGPPGTGKTVTSATIVYHLARQ-GNGPVLVCAPSNIAVDQLTEKIHQTGL---KVVRLCAKSR 435 (800)
T ss_dssp SSEEEEECCTTSCHHHHHHHHHHHHHTT-CSSCEEEEESSHHHHHHHHHHHHTTTC---CEEECCCGGG
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHHHc-CCCcEEEEcCcHHHHHHHHHHHHHhCc---ceEeecccch
Confidence 9999999999999999999999998864 478999999999999999999998876 6999998755
No 5
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=99.65 E-value=1.5e-16 Score=193.53 Aligned_cols=77 Identities=29% Similarity=0.383 Sum_probs=71.7
Q ss_pred CCCCHHHHHHHHHhcC-CCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHHhcCCCcccccc
Q psy12659 814 FKLTFHEIEAIRAGMQ-PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLDVDERHLLH 892 (1051)
Q Consensus 814 ~~Ln~~Q~~Ai~~~l~-~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~~~~~~~~~llR 892 (1051)
..||++|++||..++. +++++||||||||||+|++++|.++++ ++.+|||||+||.|+|+++++|...+. .++|
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~--~~~~ILv~a~TN~AvD~i~erL~~~~~---~ilR 262 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVK--QGLKVLCCAPSNIAVDNLVERLALCKQ---RILR 262 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHHHHTTC---CEEE
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEcCchHHHHHHHHHHHhcCC---ceEE
Confidence 3799999999999996 789999999999999999999999999 789999999999999999999988765 6889
Q ss_pred ccc
Q psy12659 893 KKY 895 (1051)
Q Consensus 893 lgs 895 (1051)
+|.
T Consensus 263 lG~ 265 (646)
T 4b3f_X 263 LGH 265 (646)
T ss_dssp CSC
T ss_pred ecc
Confidence 995
No 6
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=99.33 E-value=2.1e-12 Score=156.63 Aligned_cols=78 Identities=31% Similarity=0.456 Sum_probs=70.9
Q ss_pred CCCHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHHhcCCCcccccccc
Q psy12659 815 KLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLDVDERHLLHKK 894 (1051)
Q Consensus 815 ~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~~~~~~~~~llRlg 894 (1051)
.||++|++||..++..++++|+||||||||+|++.+|.+++.. ++.+|||||+||.|+|++.+++.+.++ .++|+|
T Consensus 180 ~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~~~~---~~~R~~ 255 (624)
T 2gk6_A 180 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ-GNGPVLVCAPSNIAVDQLTEKIHQTGL---KVVRLC 255 (624)
T ss_dssp CCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTS-SSCCEEEEESSHHHHHHHHHHHHTTTC---CEEECC
T ss_pred CCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCcHHHHHHHHHHHHhcCC---eEEeec
Confidence 7999999999999999999999999999999999999998863 578999999999999999999998765 477888
Q ss_pred cc
Q psy12659 895 YR 896 (1051)
Q Consensus 895 sr 896 (1051)
..
T Consensus 256 ~~ 257 (624)
T 2gk6_A 256 AK 257 (624)
T ss_dssp CT
T ss_pred cc
Confidence 53
No 7
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.28 E-value=3.1e-12 Score=159.03 Aligned_cols=78 Identities=29% Similarity=0.450 Sum_probs=71.1
Q ss_pred CCCHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHHhcCCCcccccccc
Q psy12659 815 KLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLDVDERHLLHKK 894 (1051)
Q Consensus 815 ~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~~~~~~~~~llRlg 894 (1051)
.||++|++||..++..++++|+||||||||+|++++|.+++.. ++.+|||||+||.|+|++.++|.+.++ .++|+|
T Consensus 360 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~-~~~~ILv~a~tn~A~d~l~~rL~~~g~---~ilR~g 435 (802)
T 2xzl_A 360 QLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKI-HKDRILVCAPSNVAVDHLAAKLRDLGL---KVVRLT 435 (802)
T ss_dssp CCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSHHHHHHHHHHHHHTTC---CEEECC
T ss_pred cCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhC-CCCeEEEEcCcHHHHHHHHHHHHhhCc---cEEeec
Confidence 7999999999999999999999999999999999999998864 578999999999999999999998765 577887
Q ss_pred cc
Q psy12659 895 YR 896 (1051)
Q Consensus 895 sr 896 (1051)
..
T Consensus 436 ~~ 437 (802)
T 2xzl_A 436 AK 437 (802)
T ss_dssp CG
T ss_pred cc
Confidence 53
No 8
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=99.24 E-value=9e-12 Score=154.85 Aligned_cols=132 Identities=24% Similarity=0.341 Sum_probs=96.3
Q ss_pred CccchHHHHHHHHHhhccCCCCChhhhhhhcccCCCCCCcccchhhhhcccccCccccccccccccCCCcccccccCCCC
Q psy12659 729 KENNFKAVLETIRDLMNTECVVPDWLHDIILGYGDPGAAHYTEMPNEIATMDFNDTFLNMDHLRSSFPQAEIRVKTDNPT 808 (1051)
Q Consensus 729 ~ennfk~vl~~i~~ll~~~~~lP~wl~difLG~gdp~~a~y~~m~~~l~~ld~~dtfl~~~hl~~sfp~~~i~~~~~~~~ 808 (1051)
....|+.....+..+...+..+..++.+.++|...+. ..+. ..++. .|.
T Consensus 302 ~~~~~~r~~~aL~~~~~~e~~~~~~l~~~ll~~~~~~-------------~~~~-~~l~~-----~~~------------ 350 (800)
T 2wjy_A 302 KSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVED-------------VIIK-CQLPK-----RFT------------ 350 (800)
T ss_dssp CCHHHHHHHHHHHHHHHCTTSBCHHHHHHHTTCCCCC-------------CCCC-CCCCS-----CCS------------
T ss_pred cCChHHHHHHHHHHHHHhhcchhHHHHHHhcCCCCCc-------------hhhc-ccCcc-----ccc------------
Confidence 3456888888887776655566677777666642110 0000 00000 010
Q ss_pred CCCCCCCCCHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHHhcCCCcc
Q psy12659 809 KLVPPFKLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLDVDER 888 (1051)
Q Consensus 809 ~~~~~~~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~~~~~~~~ 888 (1051)
......||++|++||..++..++++|+||||||||+|++.++..++.. ++.+|||||+||.|++++.+++.+.++
T Consensus 351 -~~~~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~~g~--- 425 (800)
T 2wjy_A 351 -AQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ-GNGPVLVCAPSNIAVDQLTEKIHQTGL--- 425 (800)
T ss_dssp -CTTSCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTT-CSSCEEEEESSHHHHHHHHHHHHTTTC---
T ss_pred -cccccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHc-CCCcEEEEcCcHHHHHHHHHHHHHhCc---
Confidence 001237999999999999999999999999999999999999998863 578999999999999999999998776
Q ss_pred cccccccc
Q psy12659 889 HLLHKKYR 896 (1051)
Q Consensus 889 ~llRlgsr 896 (1051)
.++|+|..
T Consensus 426 ~vvRlg~~ 433 (800)
T 2wjy_A 426 KVVRLCAK 433 (800)
T ss_dssp CEEECCCG
T ss_pred ceEeeccc
Confidence 47788853
No 9
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.79 E-value=9.4e-09 Score=123.59 Aligned_cols=66 Identities=17% Similarity=0.149 Sum_probs=61.4
Q ss_pred CCCCCHHHHHHHHHhcCCCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHH
Q psy12659 175 TIPFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKI 242 (1051)
Q Consensus 175 ~~~ln~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl 242 (1051)
...||+.|++|+..+++.++++|+||||||||+++..++..+... +.+|+++|||+.|++++.+++
T Consensus 187 ~~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~--g~~Vl~~ApT~~Aa~~L~e~~ 252 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESL--GLEVGLCAPTGKAARRLGEVT 252 (574)
T ss_dssp TTTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHhc--CCeEEEecCcHHHHHHhHhhh
Confidence 468999999999999999999999999999999999999888776 789999999999999998876
No 10
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.75 E-value=1.4e-08 Score=122.08 Aligned_cols=66 Identities=17% Similarity=0.136 Sum_probs=62.0
Q ss_pred CCCCCHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecchHHHHHHHHHH
Q psy12659 813 PFKLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKI 880 (1051)
Q Consensus 813 ~~~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l 880 (1051)
++.||+.|++|+..++.+++++|+||||||||+++..++..+.. .+.+|+++|+|+.|++++.+.+
T Consensus 187 ~~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~--~g~~Vl~~ApT~~Aa~~L~e~~ 252 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAES--LGLEVGLCAPTGKAARRLGEVT 252 (574)
T ss_dssp TTTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHh--cCCeEEEecCcHHHHHHhHhhh
Confidence 56899999999999999999999999999999999999988877 7899999999999999998876
No 11
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.71 E-value=1.5e-08 Score=122.27 Aligned_cols=67 Identities=30% Similarity=0.304 Sum_probs=59.9
Q ss_pred CCCHHHHHHHHHhcCCCeEEEEccCCCChHHHHHHHHHHHHHcC--CCCeEEEEeCCHHHHHHHHHHHHhC
Q psy12659 177 PFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNF--PHQRTLIVTHSNQALNQLFEKIISL 245 (1051)
Q Consensus 177 ~ln~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~~ii~~l~~~~--p~~riLv~a~SN~Avd~l~~rl~~~ 245 (1051)
.||++|++||.. ..+..+|+||||||||+|++..|..++... +..+||++|+||+|++++.+|+.+.
T Consensus 9 ~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 9 SLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp TCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHH
Confidence 699999999983 367789999999999999999999999753 4579999999999999999999864
No 12
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.70 E-value=1.8e-08 Score=117.64 Aligned_cols=66 Identities=23% Similarity=0.213 Sum_probs=58.0
Q ss_pred CCCCHHHHHHHHHhcC-----CCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHH
Q psy12659 176 IPFTPTQIEAIRAGMQ-----PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKI 242 (1051)
Q Consensus 176 ~~ln~~Q~~Ai~~~l~-----~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl 242 (1051)
-.||+.|++|+...+. .+..+|.||||||||+++..++..+.... ..+|+++|+||.|++++.+++
T Consensus 24 ~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~-~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 24 DDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTG-ETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTT-CCCEEEEESSHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcC-CceEEEecCcHHHHHHHHhhh
Confidence 3799999999997643 45999999999999999999999998772 248999999999999999887
No 13
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.65 E-value=2.8e-08 Score=119.95 Aligned_cols=67 Identities=30% Similarity=0.291 Sum_probs=59.8
Q ss_pred CCCHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHHHHHHhC--CCCcEEEEecchHHHHHHHHHHHhc
Q psy12659 815 KLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNF--PHQRTLIVTHSNQALNQLFEKIISL 883 (1051)
Q Consensus 815 ~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~~ll~~~--~~~riLV~a~SN~Ald~l~e~l~~~ 883 (1051)
.||+.|++||.. ..+..+|+||||||||+|+++.|.+++... +..+||++|+||.|++++.+++.+.
T Consensus 9 ~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 9 SLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp TCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHH
Confidence 799999999983 367789999999999999999999999743 4579999999999999999999765
No 14
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.60 E-value=4.8e-08 Score=118.21 Aligned_cols=66 Identities=21% Similarity=0.281 Sum_probs=59.6
Q ss_pred CHHHHHHHHHhcCCCeEEEEccCCCChHHHHHHHHHHHHHc--CCCCeEEEEeCCHHHHHHHHHHHHh
Q psy12659 179 TPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHN--FPHQRTLIVTHSNQALNQLFEKIIS 244 (1051)
Q Consensus 179 n~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~~ii~~l~~~--~p~~riLv~a~SN~Avd~l~~rl~~ 244 (1051)
++.|++|+..+++.++++|+||||||||++++.++..+... .++.+|+++|||+.|++++.+.+..
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~ 218 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGK 218 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHH
Confidence 68999999999999999999999999999999999988864 3456999999999999999888764
No 15
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.55 E-value=9e-08 Score=111.74 Aligned_cols=64 Identities=23% Similarity=0.248 Sum_probs=57.6
Q ss_pred CCCHHHHHHHHHhcC-----CCeEEEECCCCCChhHHHHHHHHHHHHhCCC-CcEEEEecchHHHHHHHHHH
Q psy12659 815 KLTFHEIEAIRAGMQ-----PGLTLVVGPPGTGKTDVAVQIISNLYHNFPH-QRTLIVTHSNQALNQLFEKI 880 (1051)
Q Consensus 815 ~Ln~~Q~~Ai~~~l~-----~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~-~riLV~a~SN~Ald~l~e~l 880 (1051)
.||+.|++|+..++. .+..+|+||||||||+++..++..|.. .+ .+|+++|+||.|++++.+++
T Consensus 25 ~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~--~~~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 25 DLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALIS--TGETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHH--TTCCCEEEEESSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHh--cCCceEEEecCcHHHHHHHHhhh
Confidence 699999999998754 359999999999999999999999988 44 48999999999999999887
No 16
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.54 E-value=9.3e-08 Score=115.69 Aligned_cols=66 Identities=20% Similarity=0.278 Sum_probs=59.3
Q ss_pred CHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHHHHHHh--CCCCcEEEEecchHHHHHHHHHHHh
Q psy12659 817 TFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHN--FPHQRTLIVTHSNQALNQLFEKIIS 882 (1051)
Q Consensus 817 n~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~~ll~~--~~~~riLV~a~SN~Ald~l~e~l~~ 882 (1051)
++.|++|+..++.+++++|+||||||||+|++.++..+... .++.+|+++|||+.|++++.+.+..
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~ 218 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGK 218 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHH
Confidence 56799999999999999999999999999999999988853 2467999999999999999988753
No 17
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=98.43 E-value=2.4e-07 Score=113.02 Aligned_cols=67 Identities=27% Similarity=0.388 Sum_probs=59.8
Q ss_pred CCCHHHHHHHHHhcCCCeEEEEccCCCChHHHHHHHHHHHHHc--CCCCeEEEEeCCHHHHHHHHHHHHhC
Q psy12659 177 PFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHN--FPHQRTLIVTHSNQALNQLFEKIISL 245 (1051)
Q Consensus 177 ~ln~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~~ii~~l~~~--~p~~riLv~a~SN~Avd~l~~rl~~~ 245 (1051)
.||++|++||... .+..+|.|+||||||+|++..+..++.. .+..+||++|+||+|++++.+|+.+.
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~ 70 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQT 70 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 6899999999853 6778999999999999999999998875 35689999999999999999999864
No 18
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=98.36 E-value=4.7e-07 Score=110.48 Aligned_cols=67 Identities=25% Similarity=0.353 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHHHHHHh--CCCCcEEEEecchHHHHHHHHHHHhc
Q psy12659 815 KLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHN--FPHQRTLIVTHSNQALNQLFEKIISL 883 (1051)
Q Consensus 815 ~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~~ll~~--~~~~riLV~a~SN~Ald~l~e~l~~~ 883 (1051)
.||+.|++||... .+..+|.|+||||||+|+++.|.+++.. .+.++||++|+||+|.+++.+++.+.
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~ 70 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQT 70 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 6899999999863 6779999999999999999999999974 35689999999999999999999765
No 19
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=98.36 E-value=5.1e-07 Score=111.30 Aligned_cols=67 Identities=30% Similarity=0.399 Sum_probs=59.5
Q ss_pred CCCHHHHHHHHHhcCCCeEEEEccCCCChHHHHHHHHHHHHHcC--CCCeEEEEeCCHHHHHHHHHHHHhC
Q psy12659 177 PFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNF--PHQRTLIVTHSNQALNQLFEKIISL 245 (1051)
Q Consensus 177 ~ln~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~~ii~~l~~~~--p~~riLv~a~SN~Avd~l~~rl~~~ 245 (1051)
.||+.|++||.. ..+..+|.|+||||||+|++..|..++... +..+||++|+||.|++++.+|+.+.
T Consensus 11 ~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 11 HLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp TSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 699999999986 356789999999999999999999999752 4579999999999999999999764
No 20
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=98.30 E-value=7.6e-07 Score=109.77 Aligned_cols=67 Identities=30% Similarity=0.413 Sum_probs=59.7
Q ss_pred CCCHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHHHHHHh--CCCCcEEEEecchHHHHHHHHHHHhc
Q psy12659 815 KLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHN--FPHQRTLIVTHSNQALNQLFEKIISL 883 (1051)
Q Consensus 815 ~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~~ll~~--~~~~riLV~a~SN~Ald~l~e~l~~~ 883 (1051)
.||+.|++||... .+..+|.|+||||||+|++..|.+|+.. .+..+||++|.||.|++++.+++.+.
T Consensus 11 ~Ln~~Q~~av~~~--~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 11 HLNKEQQEAVRTT--EGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp TSCHHHHHHHHCC--SSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHhCC--CCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 6999999999863 5678999999999999999999999974 24579999999999999999999765
No 21
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=98.02 E-value=5.5e-06 Score=107.80 Aligned_cols=69 Identities=26% Similarity=0.275 Sum_probs=58.5
Q ss_pred CCCCCCHHHHHHHHHhcCCCeEEEEccCCCChHHHHHHHHHHHHHcC----CCCeEEEEeCCHHHHHHHHHHHHh
Q psy12659 174 NTIPFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNF----PHQRTLIVTHSNQALNQLFEKIIS 244 (1051)
Q Consensus 174 ~~~~ln~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~~ii~~l~~~~----p~~riLv~a~SN~Avd~l~~rl~~ 244 (1051)
....||++|.+||... .+..+|.|+||||||+|+++-|..++... +..+||++|+||.|++++.+||.+
T Consensus 7 ~~~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 7 ADSTWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp ---CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHH
Confidence 3468999999999865 56789999999999999999888887652 346999999999999999999976
No 22
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=98.00 E-value=7.6e-06 Score=83.88 Aligned_cols=71 Identities=18% Similarity=0.312 Sum_probs=58.0
Q ss_pred CCCCCCHHHHHHHHHhcCCCeEEEEccCCCChHHHHHHHHHHHHHcC----CCCeEEEEeCCHHHHHH-HHHHHHh
Q psy12659 174 NTIPFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNF----PHQRTLIVTHSNQALNQ-LFEKIIS 244 (1051)
Q Consensus 174 ~~~~ln~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~~ii~~l~~~~----p~~riLv~a~SN~Avd~-l~~rl~~ 244 (1051)
....+++.|.+|+..++...-.+|+||+|||||.++...+..++... ++.++||++|+...+++ +.+.+..
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~ 105 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQP 105 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHH
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHH
Confidence 34689999999999999877799999999999999998887766542 36799999999998888 5444443
No 23
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=97.86 E-value=1.6e-05 Score=81.44 Aligned_cols=72 Identities=18% Similarity=0.309 Sum_probs=59.3
Q ss_pred CCCCCCHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHHHHHHhC----CCCcEEEEecchHHHHH-HHHHHHhc
Q psy12659 812 PPFKLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNF----PHQRTLIVTHSNQALNQ-LFEKIISL 883 (1051)
Q Consensus 812 ~~~~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~~ll~~~----~~~riLV~a~SN~Ald~-l~e~l~~~ 883 (1051)
+.+.+.+.|.+|+..++.+.-.+|++|+|||||.++...+..++... .+.++||++|+...+++ +.+.+...
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHH
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHH
Confidence 45589999999999999988899999999999999998888776532 36799999999998888 54444443
No 24
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.85 E-value=6.9e-05 Score=79.81 Aligned_cols=76 Identities=25% Similarity=0.246 Sum_probs=62.9
Q ss_pred CCCCCHHHHHHHHHhcCCCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCc-EE
Q psy12659 175 TIPFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLDVDERH-LL 253 (1051)
Q Consensus 175 ~~~ln~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~~~~~~~~-lv 253 (1051)
...+++.|.+|+...+..+-.+|.||+|+|||.++..++..+ +.++|+++|+...++++.+.+.+.++ . +.
T Consensus 91 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----~~~~liv~P~~~L~~q~~~~~~~~~~---~~v~ 162 (237)
T 2fz4_A 91 EISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----STPTLIVVPTLALAEQWKERLGIFGE---EYVG 162 (237)
T ss_dssp CCCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS-----CSCEEEEESSHHHHHHHHHHHGGGCG---GGEE
T ss_pred CCCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc-----CCCEEEEeCCHHHHHHHHHHHHhCCC---CeEE
Confidence 468999999999998887779999999999999988776543 56899999999999999999988543 3 55
Q ss_pred EecCC
Q psy12659 254 RLGHG 258 (1051)
Q Consensus 254 RlG~~ 258 (1051)
.++..
T Consensus 163 ~~~g~ 167 (237)
T 2fz4_A 163 EFSGR 167 (237)
T ss_dssp EESSS
T ss_pred EEeCC
Confidence 66544
No 25
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=97.84 E-value=1.6e-05 Score=103.59 Aligned_cols=67 Identities=25% Similarity=0.237 Sum_probs=59.1
Q ss_pred CCCCHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHHHHHHhC----CCCcEEEEecchHHHHHHHHHHHh
Q psy12659 814 FKLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNF----PHQRTLIVTHSNQALNQLFEKIIS 882 (1051)
Q Consensus 814 ~~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~~ll~~~----~~~riLV~a~SN~Ald~l~e~l~~ 882 (1051)
..+|+.|++||... .+..+|.|+||||||+|+++.|..++... +..+|||+|+||.|.+++.++|.+
T Consensus 9 ~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 9 STWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp -CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHH
Confidence 37999999999875 66799999999999999999999988752 346999999999999999999976
No 26
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=97.82 E-value=6.2e-05 Score=76.88 Aligned_cols=70 Identities=20% Similarity=0.169 Sum_probs=57.7
Q ss_pred CCCHHHHHHHHHhcCCCeEEEEccCCCChHHHHHHHHHHHHHc----CCCCeEEEEeCCHHHHHHHHHHHHhCC
Q psy12659 177 PFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHN----FPHQRTLIVTHSNQALNQLFEKIISLD 246 (1051)
Q Consensus 177 ~ln~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~~ii~~l~~~----~p~~riLv~a~SN~Avd~l~~rl~~~~ 246 (1051)
.+++.|.+|+..+++..-.+|++|+|||||.+....+...+.. .++.++|+++||...++++.+.+.+..
T Consensus 23 ~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 96 (207)
T 2gxq_A 23 TPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVA 96 (207)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHh
Confidence 6899999999999987789999999999998855544444321 246789999999999999999998764
No 27
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=97.79 E-value=3.4e-05 Score=80.09 Aligned_cols=70 Identities=17% Similarity=0.209 Sum_probs=57.3
Q ss_pred CCCHHHHHHHHHhcCCCeEEEEccCCCChHHHH-HHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhCC
Q psy12659 177 PFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVA-VQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLD 246 (1051)
Q Consensus 177 ~ln~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti-~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~~~ 246 (1051)
.+++.|.+|+..+++..-.+|++|+|||||.+. ..++..+.....+.++|+++||...++++.+.+.+..
T Consensus 36 ~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 106 (224)
T 1qde_A 36 EPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALA 106 (224)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHh
Confidence 689999999999988777999999999999884 4444444444456799999999999999999887653
No 28
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.76 E-value=5.9e-05 Score=80.35 Aligned_cols=69 Identities=26% Similarity=0.248 Sum_probs=59.7
Q ss_pred CCCCCCHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHHhcCC
Q psy12659 812 PPFKLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLDV 885 (1051)
Q Consensus 812 ~~~~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~~~~~ 885 (1051)
+.+.+++.|.+|+...+..+-.+|.||+|+|||.++..++..+ +.++||++|+...++++.+.+.+.++
T Consensus 90 ~~~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----~~~~liv~P~~~L~~q~~~~~~~~~~ 158 (237)
T 2fz4_A 90 AEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----STPTLIVVPTLALAEQWKERLGIFGE 158 (237)
T ss_dssp CCCCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS-----CSCEEEEESSHHHHHHHHHHHGGGCG
T ss_pred CCCCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc-----CCCEEEEeCCHHHHHHHHHHHHhCCC
Confidence 4568999999999999987779999999999999988776553 67899999999999999999887543
No 29
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=97.74 E-value=4.6e-05 Score=79.10 Aligned_cols=69 Identities=16% Similarity=0.204 Sum_probs=57.4
Q ss_pred CCCHHHHHHHHHhcCCCeEEEECCCCCChhHHH-HHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHHhc
Q psy12659 815 KLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVA-VQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISL 883 (1051)
Q Consensus 815 ~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti-~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~~~ 883 (1051)
.+++.|.+|+..++.+.-.+|++|+|||||.+. ..++..+.....+.++||++|+...++++.+.+.+.
T Consensus 36 ~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 105 (224)
T 1qde_A 36 EPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMAL 105 (224)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHH
Confidence 578899999999999888999999999999884 444444444445679999999999999999988765
No 30
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=97.73 E-value=7.1e-05 Score=76.47 Aligned_cols=70 Identities=17% Similarity=0.110 Sum_probs=58.4
Q ss_pred CCCHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHHHHHHh----CCCCcEEEEecchHHHHHHHHHHHhcC
Q psy12659 815 KLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHN----FPHQRTLIVTHSNQALNQLFEKIISLD 884 (1051)
Q Consensus 815 ~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~~ll~~----~~~~riLV~a~SN~Ald~l~e~l~~~~ 884 (1051)
.+++.|.+|+..++++.-.+|++|+|||||.+....+...+.. .++.++||++|+...++++.+.+.+..
T Consensus 23 ~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 96 (207)
T 2gxq_A 23 TPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVA 96 (207)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHh
Confidence 6788999999999998889999999999999865555444431 246799999999999999999998764
No 31
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=97.70 E-value=0.00012 Score=76.26 Aligned_cols=70 Identities=20% Similarity=0.036 Sum_probs=56.1
Q ss_pred CCCHHHHHHHHHhcCCCeEEEEccCCCChHHHHHHHHHHHHHc-------CCCCeEEEEeCCHHHHHHHHHHHHhCC
Q psy12659 177 PFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHN-------FPHQRTLIVTHSNQALNQLFEKIISLD 246 (1051)
Q Consensus 177 ~ln~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~~ii~~l~~~-------~p~~riLv~a~SN~Avd~l~~rl~~~~ 246 (1051)
.+++.|.+|+..+++..-.+|++|+|||||.+..-.+...+.. .++.++|+++||..-++++.+.+.+..
T Consensus 42 ~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 118 (228)
T 3iuy_A 42 KPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYS 118 (228)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhc
Confidence 6899999999999887778999999999998755433333221 246789999999999999999998764
No 32
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=97.68 E-value=7.6e-05 Score=78.32 Aligned_cols=71 Identities=23% Similarity=0.193 Sum_probs=58.0
Q ss_pred CCCCHHHHHHHHHhcCCCeEEEEccCCCChHHHHHHHHH-HHHHc----CCCCeEEEEeCCHHHHHHHHHHHHhCC
Q psy12659 176 IPFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIIS-NLYHN----FPHQRTLIVTHSNQALNQLFEKIISLD 246 (1051)
Q Consensus 176 ~~ln~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~~ii~-~l~~~----~p~~riLv~a~SN~Avd~l~~rl~~~~ 246 (1051)
..+++.|.+|+..+++..-.+|++|+|||||.+..-.+. .+... .++.++||++||...+.++.+.+.+.+
T Consensus 46 ~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 121 (236)
T 2pl3_A 46 RLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVG 121 (236)
T ss_dssp CBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 368999999999999877899999999999998665444 34331 236789999999999999999998764
No 33
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=97.68 E-value=5.6e-05 Score=83.22 Aligned_cols=69 Identities=20% Similarity=0.148 Sum_probs=60.1
Q ss_pred CCCHHHHHHHHHhcCC-CeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhC
Q psy12659 177 PFTPTQIEAIRAGMQP-GLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISL 245 (1051)
Q Consensus 177 ~ln~~Q~~Ai~~~l~~-~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~~ 245 (1051)
.+++.|.+|+..+++. .-.+|++|+|||||.+....+..++...++.++|+++|+...++++.+.+.+.
T Consensus 28 ~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 97 (367)
T 1hv8_A 28 KPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESL 97 (367)
T ss_dssp SCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHH
Confidence 6899999999998875 68899999999999998877776666556789999999999999999998764
No 34
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=97.65 E-value=6.1e-05 Score=81.64 Aligned_cols=71 Identities=14% Similarity=0.199 Sum_probs=61.0
Q ss_pred CCCCHHHHHHHHHhcCCCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhCCC
Q psy12659 176 IPFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLDV 247 (1051)
Q Consensus 176 ~~ln~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~~~~ 247 (1051)
+.+++.|.+|+..++..+-.+|.+|+|+|||.++..++...+.. ++.++|+++||..-+++..+.+.+.+.
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-~~~~~lil~Pt~~L~~q~~~~l~~~~~ 182 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-YEGKILIIVPTTALTTQMADDFVDYRL 182 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH-CSSEEEEECSSHHHHHHHHHHHHHHTS
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhcc
Confidence 57899999999998876677999999999999998888777765 244999999999999999999987643
No 35
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=97.64 E-value=9.8e-05 Score=76.50 Aligned_cols=69 Identities=19% Similarity=0.147 Sum_probs=56.8
Q ss_pred CCCHHHHHHHHHhcCCCeEEEEccCCCChHHHHHHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHHHhC
Q psy12659 177 PFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFP-HQRTLIVTHSNQALNQLFEKIISL 245 (1051)
Q Consensus 177 ~ln~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p-~~riLv~a~SN~Avd~l~~rl~~~ 245 (1051)
.+++.|.+|+..+++..-.+|++|+|||||.+....+...+...+ +.++||++||...++++.+.+.+.
T Consensus 36 ~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 105 (220)
T 1t6n_A 36 HPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERF 105 (220)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHH
Confidence 489999999999988777999999999999877666555544332 358999999999999998888765
No 36
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=97.64 E-value=9.7e-05 Score=75.52 Aligned_cols=70 Identities=16% Similarity=0.157 Sum_probs=55.9
Q ss_pred CCCHHHHHHHHHhcCCCeEEEEccCCCChHHHHHHHHHHHH-HcCCCCeEEEEeCCHHHHHHHHHHHHhCC
Q psy12659 177 PFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLY-HNFPHQRTLIVTHSNQALNQLFEKIISLD 246 (1051)
Q Consensus 177 ~ln~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~~ii~~l~-~~~p~~riLv~a~SN~Avd~l~~rl~~~~ 246 (1051)
.+++.|.+|+..++...-.+|++|+|||||.+..-.+...+ ...++.++|+++||...+.++.+.+.+..
T Consensus 25 ~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 95 (206)
T 1vec_A 25 KPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVS 95 (206)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHH
Confidence 68899999999998877799999999999976554433332 23345689999999999999998887653
No 37
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=97.63 E-value=6.8e-05 Score=81.26 Aligned_cols=70 Identities=11% Similarity=0.228 Sum_probs=61.0
Q ss_pred CCCCHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHHhcC
Q psy12659 814 FKLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLD 884 (1051)
Q Consensus 814 ~~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~~~~ 884 (1051)
+.+.+.|.+|+..++..+-.+|.+|+|+|||.++..++...+.. .+.++||++|+..-+++..+.+.+.+
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-~~~~~lil~Pt~~L~~q~~~~l~~~~ 181 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-YEGKILIIVPTTALTTQMADDFVDYR 181 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH-CSSEEEEECSSHHHHHHHHHHHHHHT
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhc
Confidence 47899999999999987778999999999999998888877763 33499999999999999999998764
No 38
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=97.61 E-value=0.00012 Score=76.80 Aligned_cols=70 Identities=19% Similarity=0.131 Sum_probs=57.9
Q ss_pred CCCHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHHHHH-Hh----CCCCcEEEEecchHHHHHHHHHHHhcC
Q psy12659 815 KLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLY-HN----FPHQRTLIVTHSNQALNQLFEKIISLD 884 (1051)
Q Consensus 815 ~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~~ll-~~----~~~~riLV~a~SN~Ald~l~e~l~~~~ 884 (1051)
.+++.|.+|+..++.+.-.+|++|+|||||.+..-.+...+ .. .++.++||++||...++++.+.+...+
T Consensus 47 ~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 121 (236)
T 2pl3_A 47 LVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVG 121 (236)
T ss_dssp BCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 57889999999999988899999999999998665444433 31 246799999999999999999988764
No 39
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=97.61 E-value=8.3e-05 Score=81.85 Aligned_cols=69 Identities=20% Similarity=0.143 Sum_probs=60.5
Q ss_pred CCCHHHHHHHHHhcCC-CeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHHhc
Q psy12659 815 KLTFHEIEAIRAGMQP-GLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISL 883 (1051)
Q Consensus 815 ~Ln~~Q~~Ai~~~l~~-~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~~~ 883 (1051)
.+++.|.+|+..++++ .-.+|++|+|||||.++...+..++...++.++||++|+...++++.+.+.+.
T Consensus 28 ~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 97 (367)
T 1hv8_A 28 KPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESL 97 (367)
T ss_dssp SCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHH
Confidence 5788999999999986 68999999999999998877777666556789999999999999999998775
No 40
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=97.59 E-value=0.00017 Score=77.12 Aligned_cols=69 Identities=25% Similarity=0.225 Sum_probs=56.8
Q ss_pred CCCHHHHHHHHHhcCCCeEEEEccCCCChHHHHHHH-HHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhC
Q psy12659 177 PFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQI-ISNLYHNFPHQRTLIVTHSNQALNQLFEKIISL 245 (1051)
Q Consensus 177 ~ln~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~~i-i~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~~ 245 (1051)
.+++.|.+|+..+++..-.+|++|+|||||.+..-. +..+.....+.++||++||...++++.+.+.+.
T Consensus 65 ~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~ 134 (249)
T 3ber_A 65 KPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEAL 134 (249)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 689999999999998778999999999999886554 444555444568999999999999999887654
No 41
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=97.58 E-value=9.8e-05 Score=77.48 Aligned_cols=70 Identities=24% Similarity=0.233 Sum_probs=57.9
Q ss_pred CCCHHHHHHHHHhcCCCeEEEEccCCCChHHHHH-HHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhCC
Q psy12659 177 PFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAV-QIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLD 246 (1051)
Q Consensus 177 ~ln~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~-~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~~~ 246 (1051)
.+++.|.+|+..++...-.+|++|+|||||.+.. .++..+....++.++||++||..-++++.+.+.+.+
T Consensus 46 ~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 116 (230)
T 2oxc_A 46 RPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIG 116 (230)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 5899999999999887778999999999998744 445555444456799999999999999999988754
No 42
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=97.57 E-value=0.00014 Score=75.43 Aligned_cols=69 Identities=17% Similarity=0.132 Sum_probs=57.7
Q ss_pred CCCHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHHHHHHhCC-CCcEEEEecchHHHHHHHHHHHhc
Q psy12659 815 KLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFP-HQRTLIVTHSNQALNQLFEKIISL 883 (1051)
Q Consensus 815 ~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~-~~riLV~a~SN~Ald~l~e~l~~~ 883 (1051)
.+++.|.+|+..++++.-.+|++|+|+|||.+..-.+...+.... +.++||++||...++++.+.+.+.
T Consensus 36 ~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 105 (220)
T 1t6n_A 36 HPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERF 105 (220)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHH
Confidence 478999999999999878999999999999887766665554322 359999999999999999888765
No 43
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=97.57 E-value=0.00012 Score=74.90 Aligned_cols=69 Identities=14% Similarity=0.115 Sum_probs=56.2
Q ss_pred CCCHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHHHHH-HhCCCCcEEEEecchHHHHHHHHHHHhc
Q psy12659 815 KLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLY-HNFPHQRTLIVTHSNQALNQLFEKIISL 883 (1051)
Q Consensus 815 ~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~~ll-~~~~~~riLV~a~SN~Ald~l~e~l~~~ 883 (1051)
.+++.|.+|+..++.+.-.+|++|+|+|||.+..-.+...+ ....+.++||++||...++++.+.+.+.
T Consensus 25 ~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 94 (206)
T 1vec_A 25 KPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQV 94 (206)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHH
Confidence 57889999999999988899999999999976654444333 2334578999999999999999888765
No 44
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=97.56 E-value=5.9e-05 Score=79.65 Aligned_cols=70 Identities=20% Similarity=0.217 Sum_probs=56.6
Q ss_pred CCCHHHHHHHHHhcCCCeEEEEccCCCChHHHHHHHHHHHH-HcCCCCeEEEEeCCHHHHHHHHHHHHhCC
Q psy12659 177 PFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLY-HNFPHQRTLIVTHSNQALNQLFEKIISLD 246 (1051)
Q Consensus 177 ~ln~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~~ii~~l~-~~~p~~riLv~a~SN~Avd~l~~rl~~~~ 246 (1051)
.+++.|.+|+..++...-.+|++|+|||||.+..-.+...+ ...++.++||++||...+.++.+.+.+.+
T Consensus 52 ~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 122 (237)
T 3bor_A 52 KPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALG 122 (237)
T ss_dssp SCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHh
Confidence 58999999999998877799999999999987554443333 22346799999999999999999987754
No 45
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=97.54 E-value=8.4e-05 Score=77.21 Aligned_cols=70 Identities=16% Similarity=0.170 Sum_probs=55.7
Q ss_pred CCCCHHHHHHHHHhcCCCeEEEEccCCCChHHHHHHHHHHH-HHcCCCCeEEEEeCCHHHHHHHHHHHHhC
Q psy12659 176 IPFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNL-YHNFPHQRTLIVTHSNQALNQLFEKIISL 245 (1051)
Q Consensus 176 ~~ln~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~~ii~~l-~~~~p~~riLv~a~SN~Avd~l~~rl~~~ 245 (1051)
..+++.|.+|+..+++..-.+|++|+|||||.+..-.+... ....++.++||++||...++++.+.+.+.
T Consensus 25 ~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 95 (219)
T 1q0u_A 25 YKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKI 95 (219)
T ss_dssp CSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHH
Confidence 36799999999998887778999999999998755444333 33334678999999999999998887654
No 46
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=97.52 E-value=0.00015 Score=76.18 Aligned_cols=70 Identities=21% Similarity=0.189 Sum_probs=58.2
Q ss_pred CCCHHHHHHHHHhcCCCeEEEECCCCCChhHHHH-HHHHHHHHhCCCCcEEEEecchHHHHHHHHHHHhcC
Q psy12659 815 KLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAV-QIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLD 884 (1051)
Q Consensus 815 ~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~-~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~~~~ 884 (1051)
.+++.|.+|+..++.+.-.+|++|+|+|||.+.. .++..+....++.++||++||..-++++.+.+.+.+
T Consensus 46 ~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 116 (230)
T 2oxc_A 46 RPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIG 116 (230)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 4788999999999998889999999999998744 444554444456899999999999999999988764
No 47
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=97.51 E-value=9.1e-05 Score=78.17 Aligned_cols=70 Identities=20% Similarity=0.230 Sum_probs=57.4
Q ss_pred CCCHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHHHHHH-hCCCCcEEEEecchHHHHHHHHHHHhcC
Q psy12659 815 KLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYH-NFPHQRTLIVTHSNQALNQLFEKIISLD 884 (1051)
Q Consensus 815 ~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~~ll~-~~~~~riLV~a~SN~Ald~l~e~l~~~~ 884 (1051)
.+++.|.+|+..++.+.-.+|++|+|||||.+..-.+...+. ...+.++||++||...++++.+.+.+.+
T Consensus 52 ~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 122 (237)
T 3bor_A 52 KPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALG 122 (237)
T ss_dssp SCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHh
Confidence 478899999999999878999999999999875554444332 2346799999999999999999987764
No 48
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=97.49 E-value=0.00026 Score=75.59 Aligned_cols=69 Identities=26% Similarity=0.216 Sum_probs=57.3
Q ss_pred CCCHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHH-HHHHhCCCCcEEEEecchHHHHHHHHHHHhc
Q psy12659 815 KLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIIS-NLYHNFPHQRTLIVTHSNQALNQLFEKIISL 883 (1051)
Q Consensus 815 ~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~-~ll~~~~~~riLV~a~SN~Ald~l~e~l~~~ 883 (1051)
.+++.|.+|+..++.+.-.+|++|+|||||.+..-.+. .+.....+.++||++||...++++.+.+.+.
T Consensus 65 ~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~ 134 (249)
T 3ber_A 65 KPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEAL 134 (249)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 67899999999999988899999999999988654444 4455434568999999999999999888665
No 49
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=97.46 E-value=0.00012 Score=76.09 Aligned_cols=69 Identities=16% Similarity=0.179 Sum_probs=56.3
Q ss_pred CCCHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHHHHH-HhCCCCcEEEEecchHHHHHHHHHHHhc
Q psy12659 815 KLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLY-HNFPHQRTLIVTHSNQALNQLFEKIISL 883 (1051)
Q Consensus 815 ~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~~ll-~~~~~~riLV~a~SN~Ald~l~e~l~~~ 883 (1051)
.+++.|.+|+..++.+.-.+|++|+|+|||.+..-.+...+ ....+.++||++||...++++.+.+.+.
T Consensus 26 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 95 (219)
T 1q0u_A 26 KPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKI 95 (219)
T ss_dssp SCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHH
Confidence 57889999999999988899999999999987554444433 3234679999999999999999888665
No 50
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=97.44 E-value=0.00031 Score=74.09 Aligned_cols=69 Identities=25% Similarity=0.276 Sum_probs=55.9
Q ss_pred CCCHHHHHHHHHhcCCCeEEEEccCCCChHHHHHHHHHHHHHc--CCCCeEEEEeCCHHHHHHHHHHHHhC
Q psy12659 177 PFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHN--FPHQRTLIVTHSNQALNQLFEKIISL 245 (1051)
Q Consensus 177 ~ln~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~~ii~~l~~~--~p~~riLv~a~SN~Avd~l~~rl~~~ 245 (1051)
.+++.|.+|+..+++..-.+|++|+|||||.+..-.+...+.. .++.++||++||..-++++.+.+.+.
T Consensus 51 ~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 121 (245)
T 3dkp_A 51 MPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKI 121 (245)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 5899999999998887678999999999998754444333332 23568999999999999999998775
No 51
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=97.44 E-value=0.00032 Score=73.08 Aligned_cols=70 Identities=19% Similarity=-0.006 Sum_probs=56.5
Q ss_pred CCCHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHHHHHHh-------CCCCcEEEEecchHHHHHHHHHHHhcC
Q psy12659 815 KLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHN-------FPHQRTLIVTHSNQALNQLFEKIISLD 884 (1051)
Q Consensus 815 ~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~~ll~~-------~~~~riLV~a~SN~Ald~l~e~l~~~~ 884 (1051)
.+++.|.+|+..++.+.-.+|++|.|||||.+..-.+...+.. ..+.++||++||..-++++.+.+.+..
T Consensus 42 ~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 118 (228)
T 3iuy_A 42 KPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYS 118 (228)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhc
Confidence 6788999999999998889999999999998755443333321 256789999999999999999988763
No 52
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=97.43 E-value=0.00036 Score=79.29 Aligned_cols=68 Identities=21% Similarity=0.152 Sum_probs=56.6
Q ss_pred CCCCHHHHHHHHHhcCCCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhC
Q psy12659 176 IPFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISL 245 (1051)
Q Consensus 176 ~~ln~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~~ 245 (1051)
+.+++.|.+|+..++...-.+|++|+|||||....-.+.... .++.++||++||..-+.++.+++.+.
T Consensus 20 ~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~--~~~~~~lil~Pt~~L~~q~~~~~~~~ 87 (414)
T 3oiy_A 20 KDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA--RKGKKSALVFPTVTLVKQTLERLQKL 87 (414)
T ss_dssp SCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH--TTTCCEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh--cCCCEEEEEECCHHHHHHHHHHHHHH
Confidence 357899999999999877899999999999995444444443 34789999999999999999999884
No 53
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=97.42 E-value=0.00026 Score=80.47 Aligned_cols=68 Identities=21% Similarity=0.156 Sum_probs=57.9
Q ss_pred CCCCHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHHhc
Q psy12659 814 FKLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISL 883 (1051)
Q Consensus 814 ~~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~~~ 883 (1051)
+.+++.|.+|+..++.+.-++|++|+|||||....-.+..+.. ++.++||++||...+.++.+.+.+.
T Consensus 20 ~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~--~~~~~lil~Pt~~L~~q~~~~~~~~ 87 (414)
T 3oiy_A 20 KDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR--KGKKSALVFPTVTLVKQTLERLQKL 87 (414)
T ss_dssp SCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT--TTCCEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc--CCCEEEEEECCHHHHHHHHHHHHHH
Confidence 3678999999999999888999999999999955544444443 6889999999999999999999884
No 54
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=97.40 E-value=0.00038 Score=81.21 Aligned_cols=71 Identities=20% Similarity=0.278 Sum_probs=62.7
Q ss_pred CCCCCHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHHHHHHhCC---CCcEEEEecchHHHHHHHHHHHhc
Q psy12659 813 PFKLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFP---HQRTLIVTHSNQALNQLFEKIISL 883 (1051)
Q Consensus 813 ~~~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~---~~riLV~a~SN~Ald~l~e~l~~~ 883 (1051)
|+.+.+.|.+|+..++.+.-++|.+|+|+|||.+....+...+...+ +.++||++||..-+.+..+.+.+.
T Consensus 2 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 75 (555)
T 3tbk_A 2 PLKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRY 75 (555)
T ss_dssp CCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHH
Confidence 57899999999999999888999999999999998888888777555 789999999999888888888665
No 55
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=97.40 E-value=0.00044 Score=80.02 Aligned_cols=76 Identities=25% Similarity=0.246 Sum_probs=63.8
Q ss_pred CCCCCHHHHHHHHHhcCCCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCc-EE
Q psy12659 175 TIPFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLDVDERH-LL 253 (1051)
Q Consensus 175 ~~~ln~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~~~~~~~~-lv 253 (1051)
...|++.|.+|+...+..+-.+|.||+|+|||.+...++..+ +.++||++|+...+.+..+++.+.++ . +.
T Consensus 91 ~~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~-----~~~~Lvl~P~~~L~~Q~~~~~~~~~~---~~v~ 162 (472)
T 2fwr_A 91 EISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----STPTLIVVPTLALAEQWKERLGIFGE---EYVG 162 (472)
T ss_dssp CCCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH-----CSCEEEEESSHHHHHHHHHHGGGGCG---GGEE
T ss_pred CCCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc-----CCCEEEEECCHHHHHHHHHHHHhCCC---cceE
Confidence 468999999999999887779999999999999988876654 56899999999999999999988543 4 55
Q ss_pred EecCC
Q psy12659 254 RLGHG 258 (1051)
Q Consensus 254 RlG~~ 258 (1051)
.++++
T Consensus 163 ~~~g~ 167 (472)
T 2fwr_A 163 EFSGR 167 (472)
T ss_dssp EBSSS
T ss_pred EECCC
Confidence 55544
No 56
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=97.37 E-value=0.00035 Score=76.07 Aligned_cols=65 Identities=25% Similarity=0.248 Sum_probs=55.3
Q ss_pred CCCHHHHHHHHHhcCCCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhCC
Q psy12659 177 PFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLD 246 (1051)
Q Consensus 177 ~ln~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~~~ 246 (1051)
.+++.|.+|+...++..-.+|++|+|+|||.+....+. .. +.++|+++|+...++++.+.+.+.+
T Consensus 16 ~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~---~~--~~~~liv~P~~~L~~q~~~~~~~~~ 80 (337)
T 2z0m_A 16 NFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPIL---EL--GMKSLVVTPTRELTRQVASHIRDIG 80 (337)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHH---HH--TCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHH---hh--cCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 68999999999998877899999999999987655443 33 6789999999999999999998653
No 57
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=97.36 E-value=0.00049 Score=77.88 Aligned_cols=79 Identities=20% Similarity=0.152 Sum_probs=65.0
Q ss_pred CCCCHHHHHHHHHhcCCCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhC-CCCCCcEEE
Q psy12659 176 IPFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISL-DVDERHLLR 254 (1051)
Q Consensus 176 ~~ln~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~~-~~~~~~lvR 254 (1051)
+.+.+.|.+++..++.. -.+|.+|+|+|||.++..++..++. .++.++||++|+...+++..+.+.+. +.+...+..
T Consensus 8 ~~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~-~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~ 85 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLT-KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVA 85 (494)
T ss_dssp HCCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHH-HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEE
T ss_pred CCccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHh-cCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEE
Confidence 57899999999999887 7899999999999999998887776 34789999999999999999999875 333334444
Q ss_pred ec
Q psy12659 255 LG 256 (1051)
Q Consensus 255 lG 256 (1051)
+.
T Consensus 86 ~~ 87 (494)
T 1wp9_A 86 LT 87 (494)
T ss_dssp EC
T ss_pred ee
Confidence 43
No 58
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=97.36 E-value=0.00063 Score=79.36 Aligned_cols=70 Identities=19% Similarity=0.241 Sum_probs=61.2
Q ss_pred CCCCHHHHHHHHHhcCCCeEEEEccCCCChHHHHHHHHHHHHHcCC---CCeEEEEeCCHHHHHHHHHHHHhC
Q psy12659 176 IPFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFP---HQRTLIVTHSNQALNQLFEKIISL 245 (1051)
Q Consensus 176 ~~ln~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p---~~riLv~a~SN~Avd~l~~rl~~~ 245 (1051)
+.+++.|.+|+..++...-.+|.+|+|+|||.+....+...+...+ +.++||++||..-+.+..+.+.+.
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 75 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRY 75 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHH
Confidence 5789999999999988777999999999999998888877777665 789999999998888888887664
No 59
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=97.36 E-value=0.00042 Score=73.02 Aligned_cols=69 Identities=22% Similarity=0.221 Sum_probs=56.5
Q ss_pred CCCHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHHHHHHh--CCCCcEEEEecchHHHHHHHHHHHhc
Q psy12659 815 KLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHN--FPHQRTLIVTHSNQALNQLFEKIISL 883 (1051)
Q Consensus 815 ~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~~ll~~--~~~~riLV~a~SN~Ald~l~e~l~~~ 883 (1051)
.+++.|.+|+..++.+.-.+|++|+|||||.+..-.+...+.. .++.++||++||..-++++.+.+.+.
T Consensus 51 ~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 121 (245)
T 3dkp_A 51 MPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKI 121 (245)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 5788999999999997779999999999998855444444432 24568999999999999999988775
No 60
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=97.36 E-value=0.00079 Score=71.36 Aligned_cols=71 Identities=21% Similarity=0.191 Sum_probs=56.5
Q ss_pred CCCCHHHHHHHHHhcCCCeEEEEccCCCChHHHHHHHHHHHHH-c---------CCCCeEEEEeCCHHHHHHHHHHHHhC
Q psy12659 176 IPFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYH-N---------FPHQRTLIVTHSNQALNQLFEKIISL 245 (1051)
Q Consensus 176 ~~ln~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~~ii~~l~~-~---------~p~~riLv~a~SN~Avd~l~~rl~~~ 245 (1051)
..+++.|.+|+..++...-.+|++|+|||||.+..-.+...+. . .++.++||++||..-+.++.+.+.+.
T Consensus 44 ~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 123 (253)
T 1wrb_A 44 QRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKF 123 (253)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHH
Confidence 4689999999999998777899999999999876554444433 2 12358999999999999999888765
Q ss_pred C
Q psy12659 246 D 246 (1051)
Q Consensus 246 ~ 246 (1051)
+
T Consensus 124 ~ 124 (253)
T 1wrb_A 124 S 124 (253)
T ss_dssp H
T ss_pred h
Confidence 3
No 61
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=97.35 E-value=0.00035 Score=81.69 Aligned_cols=70 Identities=14% Similarity=0.193 Sum_probs=61.4
Q ss_pred CCCCHHHHHHHHHhcCCCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhCC
Q psy12659 176 IPFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLD 246 (1051)
Q Consensus 176 ~~ln~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~~~ 246 (1051)
+.+++.|.+||..++...-.+|.||+|+|||.++..++...+.. ++.++||++|+..-+++..+.+.+.+
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-~~~~vlvl~P~~~L~~Q~~~~~~~~~ 181 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-YEGKILIIVPTTALTTQMADDFVDYR 181 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH-CSSEEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC-CCCeEEEEECcHHHHHHHHHHHHHhh
Confidence 57999999999998876778999999999999998888877765 24499999999999999999998764
No 62
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=97.35 E-value=0.00048 Score=79.72 Aligned_cols=69 Identities=26% Similarity=0.248 Sum_probs=61.0
Q ss_pred CCCCCCHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHHhcCC
Q psy12659 812 PPFKLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLDV 885 (1051)
Q Consensus 812 ~~~~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~~~~~ 885 (1051)
+++.|.+.|.+|+...+..+-.+|.||+|+|||.++..++..+ +.++||++|+...+.+..+++.+.++
T Consensus 90 ~~~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~-----~~~~Lvl~P~~~L~~Q~~~~~~~~~~ 158 (472)
T 2fwr_A 90 AEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----STPTLIVVPTLALAEQWKERLGIFGE 158 (472)
T ss_dssp CCCCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH-----CSCEEEEESSHHHHHHHHHHGGGGCG
T ss_pred CCCCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc-----CCCEEEEECCHHHHHHHHHHHHhCCC
Confidence 4568999999999999997789999999999999988877654 67999999999999999999988654
No 63
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=97.35 E-value=0.00053 Score=72.46 Aligned_cols=70 Identities=16% Similarity=0.094 Sum_probs=55.3
Q ss_pred CCCCHHHHHHHHHhcCCCeEEEEccCCCChHHHHHH-HHHHHHHc-----CCCCeEEEEeCCHHHHHHHHHHHHhC
Q psy12659 176 IPFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQ-IISNLYHN-----FPHQRTLIVTHSNQALNQLFEKIISL 245 (1051)
Q Consensus 176 ~~ln~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~~-ii~~l~~~-----~p~~riLv~a~SN~Avd~l~~rl~~~ 245 (1051)
..+++.|.+|+..++...-.++++|+|||||.+..- ++..+... ..+.++||++||..-+.++.+.+.+.
T Consensus 50 ~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 125 (242)
T 3fe2_A 50 TEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEY 125 (242)
T ss_dssp CSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHH
Confidence 358999999999988877799999999999988544 44444432 23678999999999999998777653
No 64
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=97.34 E-value=0.00055 Score=76.05 Aligned_cols=71 Identities=14% Similarity=0.091 Sum_probs=58.3
Q ss_pred CCCCHHHHHHHHHhcCC--CeEEEEccCCCChHHHHHHHHHHHH-HcCCCCeEEEEeCCHHHHHHHHHHHHhCC
Q psy12659 176 IPFTPTQIEAIRAGMQP--GLTLVVGPPGTGKTDVAVQIISNLY-HNFPHQRTLIVTHSNQALNQLFEKIISLD 246 (1051)
Q Consensus 176 ~~ln~~Q~~Ai~~~l~~--~~~lI~GPPGTGKT~ti~~ii~~l~-~~~p~~riLv~a~SN~Avd~l~~rl~~~~ 246 (1051)
..+++.|.+|+..++.. .-.+|++|+|||||.+....+...+ ...++.++|+++||..-++++.+.+.+.+
T Consensus 26 ~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 99 (395)
T 3pey_A 26 QKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMG 99 (395)
T ss_dssp CSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHh
Confidence 36899999999998875 7799999999999998766554443 33346799999999999999999998754
No 65
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=97.32 E-value=0.00026 Score=76.18 Aligned_cols=70 Identities=20% Similarity=0.153 Sum_probs=56.0
Q ss_pred CCCHHHHHHHHHhcCCCeEEEEccCCCChHHHHHHH-HHHHHHc----CCCCeEEEEeCCHHHHHHHHHHHHhCC
Q psy12659 177 PFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQI-ISNLYHN----FPHQRTLIVTHSNQALNQLFEKIISLD 246 (1051)
Q Consensus 177 ~ln~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~~i-i~~l~~~----~p~~riLv~a~SN~Avd~l~~rl~~~~ 246 (1051)
.+++.|.+|+..++...-.+|+||.|||||.+..-. +..+... ..+.++|+++||..-+.++.+.+.+.+
T Consensus 76 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 150 (262)
T 3ly5_A 76 NMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELM 150 (262)
T ss_dssp BCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHH
Confidence 589999999998887666899999999999885554 4444431 136789999999999999999988754
No 66
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=97.31 E-value=0.00025 Score=82.95 Aligned_cols=71 Identities=11% Similarity=0.221 Sum_probs=62.1
Q ss_pred CCCCCHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHHhcC
Q psy12659 813 PFKLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLD 884 (1051)
Q Consensus 813 ~~~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~~~~ 884 (1051)
++.+++.|.+||..++...-.+|.||+|+|||.++..++..++.. .+.++||++|+..-+++..+.+.+.+
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-~~~~vlvl~P~~~L~~Q~~~~~~~~~ 181 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-YEGKILIIVPTTALTTQMADDFVDYR 181 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH-CSSEEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC-CCCeEEEEECcHHHHHHHHHHHHHhh
Confidence 448999999999999987789999999999999999888887763 34499999999999999999997763
No 67
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=97.30 E-value=0.00044 Score=77.13 Aligned_cols=69 Identities=19% Similarity=0.139 Sum_probs=56.3
Q ss_pred CCCHHHHHHHHHhcCCCeEEEEccCCCChHHHHHHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHHHhC
Q psy12659 177 PFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNF-PHQRTLIVTHSNQALNQLFEKIISL 245 (1051)
Q Consensus 177 ~ln~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~~ii~~l~~~~-p~~riLv~a~SN~Avd~l~~rl~~~ 245 (1051)
.+++.|.+|+..++...-.+|++|+|+|||.+....+...+... ++.++||++||..-++++.+.+.+.
T Consensus 30 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 99 (391)
T 1xti_A 30 HPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERF 99 (391)
T ss_dssp SCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHH
Confidence 58899999999999877799999999999987665554444332 3569999999999999998887764
No 68
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=97.30 E-value=0.0005 Score=74.80 Aligned_cols=64 Identities=22% Similarity=0.205 Sum_probs=55.2
Q ss_pred CCCHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHHhc
Q psy12659 815 KLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISL 883 (1051)
Q Consensus 815 ~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~~~ 883 (1051)
.+++.|.+|+...+++.-.+|++|+|+|||.+....+. . .+.++||++|+...++++.+.+.+.
T Consensus 16 ~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~---~--~~~~~liv~P~~~L~~q~~~~~~~~ 79 (337)
T 2z0m_A 16 NFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPIL---E--LGMKSLVVTPTRELTRQVASHIRDI 79 (337)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHH---H--HTCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHH---h--hcCCEEEEeCCHHHHHHHHHHHHHH
Confidence 57889999999999988899999999999987655443 3 3689999999999999999998765
No 69
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=97.29 E-value=0.00066 Score=79.45 Aligned_cols=71 Identities=21% Similarity=0.301 Sum_probs=60.0
Q ss_pred CCCCCHHHHHHHHHhcCCCeEEEEccCCCChHHHHHHHHHHHHHcCC---CCeEEEEeCCHHHHHHHHHHHHhC
Q psy12659 175 TIPFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFP---HQRTLIVTHSNQALNQLFEKIISL 245 (1051)
Q Consensus 175 ~~~ln~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p---~~riLv~a~SN~Avd~l~~rl~~~ 245 (1051)
.+.+++-|.+||..++...-.+|.+|+|+|||.+....+...+...+ +.++||++||..-+.+..+.+.+.
T Consensus 5 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 78 (556)
T 4a2p_A 5 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHH 78 (556)
T ss_dssp ---CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 36789999999999988767999999999999998888877777665 789999999999889988888764
No 70
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=97.29 E-value=0.00051 Score=80.38 Aligned_cols=72 Identities=19% Similarity=0.280 Sum_probs=60.8
Q ss_pred CCCCCCHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHHHHHHhCC---CCcEEEEecchHHHHHHHHHHHhc
Q psy12659 812 PPFKLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFP---HQRTLIVTHSNQALNQLFEKIISL 883 (1051)
Q Consensus 812 ~~~~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~---~~riLV~a~SN~Ald~l~e~l~~~ 883 (1051)
.++.+.+.|.+||..++.+.-.+|.+|+|+|||.+....+.+.+...+ +.++||++||..-+.+..+.+.+.
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 78 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHH 78 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 456889999999999999778999999999999998888888777555 789999999999999998888765
No 71
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=97.28 E-value=0.00033 Score=78.63 Aligned_cols=71 Identities=17% Similarity=0.058 Sum_probs=56.4
Q ss_pred CCCCHHHHHHHHHhcCC--CeEEEEccCCCChHHHHHHH-HHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhCC
Q psy12659 176 IPFTPTQIEAIRAGMQP--GLTLVVGPPGTGKTDVAVQI-ISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLD 246 (1051)
Q Consensus 176 ~~ln~~Q~~Ai~~~l~~--~~~lI~GPPGTGKT~ti~~i-i~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~~~ 246 (1051)
..+++.|.+|+..++.. .-.+|++|+|||||.+..-. +..+....++.++|+++||...+.++.+.+.+.+
T Consensus 46 ~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 119 (412)
T 3fht_A 46 NRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMG 119 (412)
T ss_dssp CSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHH
Confidence 46899999999998875 78999999999999886544 3344333345689999999999999988777643
No 72
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=97.28 E-value=0.00035 Score=75.12 Aligned_cols=70 Identities=20% Similarity=0.146 Sum_probs=57.3
Q ss_pred CCCHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHHHHHHh-----CCCCcEEEEecchHHHHHHHHHHHhcC
Q psy12659 815 KLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHN-----FPHQRTLIVTHSNQALNQLFEKIISLD 884 (1051)
Q Consensus 815 ~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~~ll~~-----~~~~riLV~a~SN~Ald~l~e~l~~~~ 884 (1051)
.+++.|.+|+..++.+.-.+|++|.|||||.+..-.+...+.. ..+.++||++||..-+.++.+.+.+.+
T Consensus 76 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 150 (262)
T 3ly5_A 76 NMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELM 150 (262)
T ss_dssp BCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHH
Confidence 5789999999999997779999999999998865544444432 146789999999999999999988753
No 73
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=97.25 E-value=0.00048 Score=76.51 Aligned_cols=70 Identities=14% Similarity=0.112 Sum_probs=58.4
Q ss_pred CCCHHHHHHHHHhcCC--CeEEEECCCCCChhHHHHHHHHHHHH-hCCCCcEEEEecchHHHHHHHHHHHhcC
Q psy12659 815 KLTFHEIEAIRAGMQP--GLTLVVGPPGTGKTDVAVQIISNLYH-NFPHQRTLIVTHSNQALNQLFEKIISLD 884 (1051)
Q Consensus 815 ~Ln~~Q~~Ai~~~l~~--~~tlIqGPPGTGKT~ti~~iI~~ll~-~~~~~riLV~a~SN~Ald~l~e~l~~~~ 884 (1051)
.+++.|.+|+..++.. .-.+|++|+|+|||.++...+...+. ..++.++||++|+...++++.+.+.+.+
T Consensus 27 ~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 99 (395)
T 3pey_A 27 KPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMG 99 (395)
T ss_dssp SCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHh
Confidence 6788999999999986 88999999999999987766554443 3356799999999999999999887653
No 74
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=97.25 E-value=0.0004 Score=77.95 Aligned_cols=70 Identities=23% Similarity=0.174 Sum_probs=56.7
Q ss_pred CCCHHHHHHHHHhcCCCeEEEEccCCCChHHHHHHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHHhCC
Q psy12659 177 PFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHN-FPHQRTLIVTHSNQALNQLFEKIISLD 246 (1051)
Q Consensus 177 ~ln~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~~ii~~l~~~-~p~~riLv~a~SN~Avd~l~~rl~~~~ 246 (1051)
.+++.|.+|+..++...-.+|++|+|||||.+....+...+.. ..+.++|+++||..-++++.+.+.+.+
T Consensus 43 ~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 113 (400)
T 1s2m_A 43 KPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLG 113 (400)
T ss_dssp SCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHh
Confidence 5899999999998876669999999999998766555444432 245689999999999999998887653
No 75
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=97.22 E-value=0.0007 Score=71.50 Aligned_cols=69 Identities=14% Similarity=0.080 Sum_probs=55.4
Q ss_pred CCCHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHH-HHHHHHh-----CCCCcEEEEecchHHHHHHHHHHHhc
Q psy12659 815 KLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQI-ISNLYHN-----FPHQRTLIVTHSNQALNQLFEKIISL 883 (1051)
Q Consensus 815 ~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~i-I~~ll~~-----~~~~riLV~a~SN~Ald~l~e~l~~~ 883 (1051)
.+++.|.+|+..++.+.-.++++|+|||||.+..-. +..+... ..+.++||++||..-+.++.+.+.+.
T Consensus 51 ~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 125 (242)
T 3fe2_A 51 EPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEY 125 (242)
T ss_dssp SCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHH
Confidence 578899999999999888999999999999885444 4444421 23678999999999999998877654
No 76
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=97.21 E-value=0.00089 Score=70.97 Aligned_cols=70 Identities=19% Similarity=0.160 Sum_probs=56.8
Q ss_pred CCCHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHHHHHH-h---------CCCCcEEEEecchHHHHHHHHHHHhcC
Q psy12659 815 KLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYH-N---------FPHQRTLIVTHSNQALNQLFEKIISLD 884 (1051)
Q Consensus 815 ~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~~ll~-~---------~~~~riLV~a~SN~Ald~l~e~l~~~~ 884 (1051)
.+++.|.+|+..++.+.-.+|++|.|||||.+..-.+...+. . ..+.++||++||..-++++.+.+...+
T Consensus 45 ~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 124 (253)
T 1wrb_A 45 RPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFS 124 (253)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHh
Confidence 678999999999999888999999999999876555544443 1 123599999999999999998887653
No 77
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=97.21 E-value=0.00045 Score=77.68 Aligned_cols=70 Identities=17% Similarity=0.185 Sum_probs=57.6
Q ss_pred CCCCHHHHHHHHHhcCCCeEEEEccCCCChHHHHHHHHHHHHH-cCCCCeEEEEeCCHHHHHHHHHHHHhC
Q psy12659 176 IPFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYH-NFPHQRTLIVTHSNQALNQLFEKIISL 245 (1051)
Q Consensus 176 ~~ln~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~~ii~~l~~-~~p~~riLv~a~SN~Avd~l~~rl~~~ 245 (1051)
..+++.|.+|+..++...-.+|++|+|||||.+....+...+. ...+.++||++||...++++.+.+.+.
T Consensus 61 ~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 131 (414)
T 3eiq_A 61 EKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMAL 131 (414)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHH
Confidence 3688999999999988767899999999999986655544443 224678999999999999999988775
No 78
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=97.20 E-value=0.00049 Score=77.27 Aligned_cols=69 Identities=22% Similarity=0.134 Sum_probs=57.1
Q ss_pred CCCHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHHHHHHh-CCCCcEEEEecchHHHHHHHHHHHhc
Q psy12659 815 KLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHN-FPHQRTLIVTHSNQALNQLFEKIISL 883 (1051)
Q Consensus 815 ~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~~ll~~-~~~~riLV~a~SN~Ald~l~e~l~~~ 883 (1051)
.+++.|.+|+..++.+.-.+|++|+|+|||.+....+...+.. ..+.++||++|+...++++.+.+...
T Consensus 43 ~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 112 (400)
T 1s2m_A 43 KPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTL 112 (400)
T ss_dssp SCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHH
Confidence 5889999999999987779999999999998776655554432 24569999999999999999888765
No 79
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=97.19 E-value=0.00063 Score=75.85 Aligned_cols=69 Identities=17% Similarity=0.124 Sum_probs=56.9
Q ss_pred CCCHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHHHHHHhC-CCCcEEEEecchHHHHHHHHHHHhc
Q psy12659 815 KLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNF-PHQRTLIVTHSNQALNQLFEKIISL 883 (1051)
Q Consensus 815 ~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~~ll~~~-~~~riLV~a~SN~Ald~l~e~l~~~ 883 (1051)
.+.+.|.+|+..++.+.-.+|++|+|+|||.+....+...+... .+.++||++|+..-++++.+.+.+.
T Consensus 30 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 99 (391)
T 1xti_A 30 HPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERF 99 (391)
T ss_dssp SCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHH
Confidence 47899999999999988899999999999987765555544322 3569999999999999998887665
No 80
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=97.18 E-value=0.0006 Score=77.14 Aligned_cols=68 Identities=19% Similarity=0.136 Sum_probs=60.9
Q ss_pred CCCCHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHHhc
Q psy12659 814 FKLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISL 883 (1051)
Q Consensus 814 ~~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~~~ 883 (1051)
+.+.+.|.+++..++.. -.+|.+|+|+|||.++..++..++. .++.++||++|+...+++..+.+.+.
T Consensus 8 ~~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~-~~~~~~liv~P~~~L~~q~~~~~~~~ 75 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLT-KYGGKVLMLAPTKPLVLQHAESFRRL 75 (494)
T ss_dssp HCCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHH-HSCSCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHh-cCCCeEEEEECCHHHHHHHHHHHHHH
Confidence 46888999999999988 8899999999999999999888776 36789999999999999999999876
No 81
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=97.18 E-value=0.00055 Score=76.82 Aligned_cols=69 Identities=14% Similarity=0.050 Sum_probs=55.8
Q ss_pred CCCHHHHHHHHHhcCC--CeEEEECCCCCChhHHHHHHHH-HHHHhCCCCcEEEEecchHHHHHHHHHHHhc
Q psy12659 815 KLTFHEIEAIRAGMQP--GLTLVVGPPGTGKTDVAVQIIS-NLYHNFPHQRTLIVTHSNQALNQLFEKIISL 883 (1051)
Q Consensus 815 ~Ln~~Q~~Ai~~~l~~--~~tlIqGPPGTGKT~ti~~iI~-~ll~~~~~~riLV~a~SN~Ald~l~e~l~~~ 883 (1051)
.+++.|.+|+..++.. .-.+|++|+|+|||.+....+. .+.....+.++||++|+...+.++.+.+.+.
T Consensus 47 ~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 118 (412)
T 3fht_A 47 RPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQM 118 (412)
T ss_dssp SCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHH
Confidence 5788999999999986 8899999999999988654444 3333334569999999999999998777664
No 82
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=97.17 E-value=0.00027 Score=78.82 Aligned_cols=70 Identities=17% Similarity=0.144 Sum_probs=56.3
Q ss_pred CCCCHHHHHHHHHhcCCCeEEEEccCCCChHHHHHHHHHH-HHHcCCCCeEEEEeCCHHHHHHHHHHHHhC
Q psy12659 176 IPFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISN-LYHNFPHQRTLIVTHSNQALNQLFEKIISL 245 (1051)
Q Consensus 176 ~~ln~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~~ii~~-l~~~~p~~riLv~a~SN~Avd~l~~rl~~~ 245 (1051)
..+++.|.+|+...+...-.+|++|+|+|||.+..-.+.. +.....+.++|+++|+..-++++.+.+.+.
T Consensus 42 ~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 112 (394)
T 1fuu_A 42 EEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMAL 112 (394)
T ss_dssp CSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHH
Confidence 3689999999999888777899999999999875444433 333334679999999999999999888764
No 83
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=97.16 E-value=0.0011 Score=85.29 Aligned_cols=73 Identities=23% Similarity=0.190 Sum_probs=65.3
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHHhcC
Q psy12659 810 LVPPFKLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLD 884 (1051)
Q Consensus 810 ~~~~~~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~~~~ 884 (1051)
...+|.+++.|.+||..++.+.-.+|+||.|+|||.++...|...+. .+.+++|++|+...+++....+.+..
T Consensus 179 ~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~--~g~rvlvl~PtraLa~Q~~~~l~~~~ 251 (1108)
T 3l9o_A 179 RTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK--NKQRVIYTSPIKALSNQKYRELLAEF 251 (1108)
T ss_dssp SCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHHHHHHHT
T ss_pred HhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh--cCCeEEEEcCcHHHHHHHHHHHHHHh
Confidence 34577899999999999999889999999999999998888887776 68899999999999999999998753
No 84
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=97.16 E-value=0.00058 Score=76.75 Aligned_cols=69 Identities=17% Similarity=0.201 Sum_probs=57.9
Q ss_pred CCCHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHHHHHH-hCCCCcEEEEecchHHHHHHHHHHHhc
Q psy12659 815 KLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYH-NFPHQRTLIVTHSNQALNQLFEKIISL 883 (1051)
Q Consensus 815 ~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~~ll~-~~~~~riLV~a~SN~Ald~l~e~l~~~ 883 (1051)
.+++.|.+|+..++.+.-.+|++|+|+|||.+....+...+. ...+.++||++|+...++++.+.+.+.
T Consensus 62 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 131 (414)
T 3eiq_A 62 KPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMAL 131 (414)
T ss_dssp SCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHH
Confidence 578899999999999877999999999999986665555443 235679999999999999999988765
No 85
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=97.15 E-value=0.00072 Score=86.28 Aligned_cols=71 Identities=24% Similarity=0.182 Sum_probs=64.0
Q ss_pred CCCCCCCHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHHhc
Q psy12659 811 VPPFKLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISL 883 (1051)
Q Consensus 811 ~~~~~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~~~ 883 (1051)
..||.+++.|.+||...+.+.-++|.||.|+|||.+..-.|..++. ++.++||++|+...+++..+++.+.
T Consensus 35 ~~~f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~--~g~~vlvl~PtraLa~Q~~~~l~~~ 105 (997)
T 4a4z_A 35 SWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR--NMTKTIYTSPIKALSNQKFRDFKET 105 (997)
T ss_dssp CCSSCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH--TTCEEEEEESCGGGHHHHHHHHHTT
T ss_pred hCCCCCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999987777777776 6789999999999999999999875
No 86
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=97.14 E-value=0.00048 Score=77.68 Aligned_cols=70 Identities=17% Similarity=0.197 Sum_probs=57.7
Q ss_pred CCCHHHHHHHHHhcCCCeEEEEccCCCChHHHHHHHHHHHHH-cCCCCeEEEEeCCHHHHHHHHHHHHhCC
Q psy12659 177 PFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYH-NFPHQRTLIVTHSNQALNQLFEKIISLD 246 (1051)
Q Consensus 177 ~ln~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~~ii~~l~~-~~p~~riLv~a~SN~Avd~l~~rl~~~~ 246 (1051)
.+++.|.+|+..++...-.+|++|+|||||.+....+...+. ..++.++||++||..-+.++.+.+.+.+
T Consensus 59 ~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 129 (410)
T 2j0s_A 59 KPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALG 129 (410)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHh
Confidence 588999999999988777999999999999877665544433 2346799999999999999999887754
No 87
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.13 E-value=0.00069 Score=71.49 Aligned_cols=69 Identities=17% Similarity=0.201 Sum_probs=56.0
Q ss_pred CCCHHHHHHHHHhcCCCeEEEEccCCCChHHHHHHHHHHHHHcCC---CCeEEEEeCCHHHHHHHHHHHHhC
Q psy12659 177 PFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFP---HQRTLIVTHSNQALNQLFEKIISL 245 (1051)
Q Consensus 177 ~ln~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p---~~riLv~a~SN~Avd~l~~rl~~~ 245 (1051)
++.+.|.+++..+......+|.||.|||||+++..++.......+ +.++++.+|+...+.++.+++...
T Consensus 61 p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~ 132 (235)
T 3llm_A 61 PVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFE 132 (235)
T ss_dssp GGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHH
Confidence 567789999999988899999999999999888776555433221 348999999999999999998753
No 88
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.11 E-value=0.00022 Score=82.96 Aligned_cols=47 Identities=26% Similarity=0.363 Sum_probs=40.8
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhC
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISL 245 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~~ 245 (1051)
..+++|.||||||||+.|.+++. ..++||+|||+.|.+++.+++.+.
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~~-------~~~~lVlTpT~~aa~~l~~kl~~~ 207 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRVN-------FEEDLILVPGRQAAEMIRRRANAS 207 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHCC-------TTTCEEEESCHHHHHHHHHHHTTT
T ss_pred ccEEEEEcCCCCCHHHHHHHHhc-------cCCeEEEeCCHHHHHHHHHHhhhc
Confidence 56899999999999999988753 257899999999999999999643
No 89
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=97.10 E-value=0.00039 Score=77.56 Aligned_cols=69 Identities=16% Similarity=0.136 Sum_probs=56.5
Q ss_pred CCCHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHHHHH-HhCCCCcEEEEecchHHHHHHHHHHHhc
Q psy12659 815 KLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLY-HNFPHQRTLIVTHSNQALNQLFEKIISL 883 (1051)
Q Consensus 815 ~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~~ll-~~~~~~riLV~a~SN~Ald~l~e~l~~~ 883 (1051)
.+++.|++|+...+.+.-.+|++|+|+|||.+..-.+...+ ....+.++||++|+..-++++.+.+.+.
T Consensus 43 ~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 112 (394)
T 1fuu_A 43 EPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMAL 112 (394)
T ss_dssp SCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHH
Confidence 67899999999999988899999999999988554444433 3334679999999999999998888664
No 90
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=97.10 E-value=0.00075 Score=74.29 Aligned_cols=71 Identities=17% Similarity=0.080 Sum_probs=56.0
Q ss_pred CCCCHHHHHHHHHhcCC--CeEEEEccCCCChHHHHH-HHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhCC
Q psy12659 176 IPFTPTQIEAIRAGMQP--GLTLVVGPPGTGKTDVAV-QIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLD 246 (1051)
Q Consensus 176 ~~ln~~Q~~Ai~~~l~~--~~~lI~GPPGTGKT~ti~-~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~~~ 246 (1051)
..+++.|.+|+..++.. .-.++++|+|||||.... .++..+....++.++||++||..-+.++.+.+...+
T Consensus 113 ~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~ 186 (300)
T 3fmo_B 113 NRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMG 186 (300)
T ss_dssp CSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHH
Confidence 46788999999999874 678999999999998744 455555444345589999999999999888776653
No 91
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=97.09 E-value=0.00074 Score=76.15 Aligned_cols=70 Identities=17% Similarity=0.197 Sum_probs=58.3
Q ss_pred CCCHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHHHHHH-hCCCCcEEEEecchHHHHHHHHHHHhcC
Q psy12659 815 KLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYH-NFPHQRTLIVTHSNQALNQLFEKIISLD 884 (1051)
Q Consensus 815 ~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~~ll~-~~~~~riLV~a~SN~Ald~l~e~l~~~~ 884 (1051)
.+++.|.+|+..++.+.-.+|++|+|||||.+....+...+. ..++.++||++||..-+.++.+.+...+
T Consensus 59 ~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 129 (410)
T 2j0s_A 59 KPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALG 129 (410)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHh
Confidence 478899999999999878999999999999887665555443 2356899999999999999999887653
No 92
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=97.09 E-value=0.0004 Score=83.09 Aligned_cols=71 Identities=25% Similarity=0.223 Sum_probs=49.2
Q ss_pred CCCCCHHHHHHHHHhcC-----CCeEEEEccCCCChHHHHHHHHHHHHHcC-------CCCeEEEEeCCHHHHHHHH-HH
Q psy12659 175 TIPFTPTQIEAIRAGMQ-----PGLTLVVGPPGTGKTDVAVQIISNLYHNF-------PHQRTLIVTHSNQALNQLF-EK 241 (1051)
Q Consensus 175 ~~~ln~~Q~~Ai~~~l~-----~~~~lI~GPPGTGKT~ti~~ii~~l~~~~-------p~~riLv~a~SN~Avd~l~-~r 241 (1051)
...+.+.|.+||..++. .+-.+|++|+|||||.++..++..++... ++.++|+++|+..-+++.. +.
T Consensus 176 ~~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 176 GYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 46899999999998764 46679999999999999999999998865 6789999999998888887 44
Q ss_pred HHhC
Q psy12659 242 IISL 245 (1051)
Q Consensus 242 l~~~ 245 (1051)
+...
T Consensus 256 ~~~~ 259 (590)
T 3h1t_A 256 FTPF 259 (590)
T ss_dssp CTTT
T ss_pred HHhc
Confidence 4443
No 93
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=97.09 E-value=0.0017 Score=83.80 Aligned_cols=74 Identities=24% Similarity=0.225 Sum_probs=64.4
Q ss_pred CCCCCCCCCHHHHHHHHHhcCCCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhCC
Q psy12659 171 PRKNTIPFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLD 246 (1051)
Q Consensus 171 ~~~~~~~ln~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~~~ 246 (1051)
.....+.+++.|.+||..++...-.+|+||.|+|||.+....+...+.. +.++||++|+...+.+...++.+..
T Consensus 178 ~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~--g~rvlvl~PtraLa~Q~~~~l~~~~ 251 (1108)
T 3l9o_A 178 ARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN--KQRVIYTSPIKALSNQKYRELLAEF 251 (1108)
T ss_dssp SSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHHHHHT
T ss_pred HHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc--CCeEEEEcCcHHHHHHHHHHHHHHh
Confidence 3445568999999999999988889999999999999988877777765 7899999999999999999998753
No 94
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=97.07 E-value=0.0013 Score=74.05 Aligned_cols=70 Identities=23% Similarity=0.312 Sum_probs=56.5
Q ss_pred CCCCHHHHHHHHHhcCCCeEEEEccCCCChHHHHH-HHHHHHHHcCC------------------CCeEEEEeCCHHHHH
Q psy12659 176 IPFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAV-QIISNLYHNFP------------------HQRTLIVTHSNQALN 236 (1051)
Q Consensus 176 ~~ln~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~-~ii~~l~~~~p------------------~~riLv~a~SN~Avd 236 (1051)
..+++.|.+|+...+...-.+|++|+|||||.+.. -++..+....+ +.++||++||..-+.
T Consensus 36 ~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~ 115 (417)
T 2i4i_A 36 TRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAV 115 (417)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHH
T ss_pred CCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHHHH
Confidence 36899999999998887788999999999998544 45566655422 257999999999999
Q ss_pred HHHHHHHhC
Q psy12659 237 QLFEKIISL 245 (1051)
Q Consensus 237 ~l~~rl~~~ 245 (1051)
++.+.+.+.
T Consensus 116 q~~~~~~~~ 124 (417)
T 2i4i_A 116 QIYEEARKF 124 (417)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988764
No 95
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=97.05 E-value=0.00018 Score=69.44 Aligned_cols=44 Identities=57% Similarity=0.819 Sum_probs=40.9
Q ss_pred cccChhhHHHhccCHHHHHhhhcCceeeccccccccccccchHH
Q psy12659 895 YRITPRYLLLAIKNDVELSQLLSDVTIAQGGVMPNIQSMKFDKT 938 (1051)
Q Consensus 895 sritpr~l~laVrnd~eL~~LL~~vtIs~ggvlp~i~k~ll~k~ 938 (1051)
.+++|+|++++++||+||..++.+++|++||++|++|+.++.++
T Consensus 74 ~rItp~hi~lAI~nDeEL~~Ll~~vtia~ggv~p~i~~~l~~k~ 117 (120)
T 2f8n_G 74 GRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKK 117 (120)
T ss_dssp SEECHHHHHHHHHTSHHHHHHTTTEEETTCCCCCCCCGGGSCCC
T ss_pred ceEcHHHHHHHHhcCHHHHHHhCCceECCCCcCCCcCHHHcCCc
Confidence 47899999999999999999999999999999999999988543
No 96
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=97.04 E-value=0.00048 Score=82.36 Aligned_cols=71 Identities=24% Similarity=0.294 Sum_probs=50.3
Q ss_pred CCCCHHHHHHHHHhcC-----CCeEEEECCCCCChhHHHHHHHHHHHHhC-------CCCcEEEEecchHHHHHHH-HHH
Q psy12659 814 FKLTFHEIEAIRAGMQ-----PGLTLVVGPPGTGKTDVAVQIISNLYHNF-------PHQRTLIVTHSNQALNQLF-EKI 880 (1051)
Q Consensus 814 ~~Ln~~Q~~Ai~~~l~-----~~~tlIqGPPGTGKT~ti~~iI~~ll~~~-------~~~riLV~a~SN~Ald~l~-e~l 880 (1051)
+.+.+.|.+||..++. .+-.+|++|+|||||.++..++..++... .+.++||++|+..-+++.. +.+
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 4789999999999875 46679999999999999999999998865 6799999999999989988 555
Q ss_pred HhcC
Q psy12659 881 ISLD 884 (1051)
Q Consensus 881 ~~~~ 884 (1051)
...+
T Consensus 257 ~~~~ 260 (590)
T 3h1t_A 257 TPFG 260 (590)
T ss_dssp TTTC
T ss_pred Hhcc
Confidence 5443
No 97
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.03 E-value=0.001 Score=70.25 Aligned_cols=69 Identities=19% Similarity=0.172 Sum_probs=55.3
Q ss_pred CCCHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHHHH-HHhCC--CCcEEEEecchHHHHHHHHHHHhc
Q psy12659 815 KLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNL-YHNFP--HQRTLIVTHSNQALNQLFEKIISL 883 (1051)
Q Consensus 815 ~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~~l-l~~~~--~~riLV~a~SN~Ald~l~e~l~~~ 883 (1051)
++.+.|.+++.....+..++|.||.|||||+.+..++... ..... +.++++++++.....++.+++...
T Consensus 61 p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~ 132 (235)
T 3llm_A 61 PVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFE 132 (235)
T ss_dssp GGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHH
Confidence 4667799999999999999999999999998777666543 33211 238999999999999998888654
No 98
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=97.00 E-value=0.0012 Score=84.37 Aligned_cols=71 Identities=24% Similarity=0.226 Sum_probs=62.7
Q ss_pred CCCCCCCHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHHhc
Q psy12659 811 VPPFKLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISL 883 (1051)
Q Consensus 811 ~~~~~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~~~ 883 (1051)
..||.+++.|.+||..+..+.-.+|++|.|+|||.++.-.|...+. .+.++|+++|+..-+++..+.+.+.
T Consensus 82 ~~~f~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~--~g~rvL~l~PtkaLa~Q~~~~l~~~ 152 (1010)
T 2xgj_A 82 TYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK--NKQRVIYTSPIKALSNQKYRELLAE 152 (1010)
T ss_dssp CCSSCCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc--cCCeEEEECChHHHHHHHHHHHHHH
Confidence 3567899999999999998888999999999999998777777776 6789999999999999999888764
No 99
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=97.00 E-value=0.0012 Score=80.81 Aligned_cols=67 Identities=22% Similarity=0.293 Sum_probs=56.0
Q ss_pred CCCHHHHHHHHH-hcCCCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHh
Q psy12659 177 PFTPTQIEAIRA-GMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIIS 244 (1051)
Q Consensus 177 ~ln~~Q~~Ai~~-~l~~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~ 244 (1051)
.+++.|.+|+.. ..+....+|+||+|+|||+++...+...+.. .+.++++++|+...+.++.+++..
T Consensus 30 ~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~-~~~~il~i~P~r~La~q~~~~~~~ 97 (715)
T 2va8_A 30 KLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK-NGGKAIYVTPLRALTNEKYLTFKD 97 (715)
T ss_dssp BCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH-SCSEEEEECSCHHHHHHHHHHHGG
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH-CCCeEEEEeCcHHHHHHHHHHHHH
Confidence 789999999998 4567889999999999999997665544432 167999999999999999999843
No 100
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=96.98 E-value=0.0012 Score=72.72 Aligned_cols=70 Identities=16% Similarity=0.094 Sum_probs=56.1
Q ss_pred CCCHHHHHHHHHhcCC--CeEEEECCCCCChhHHHH-HHHHHHHHhCCCCcEEEEecchHHHHHHHHHHHhcC
Q psy12659 815 KLTFHEIEAIRAGMQP--GLTLVVGPPGTGKTDVAV-QIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLD 884 (1051)
Q Consensus 815 ~Ln~~Q~~Ai~~~l~~--~~tlIqGPPGTGKT~ti~-~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~~~~ 884 (1051)
.+++.|.+|+..++.+ .-.++++|.|||||.... .++..+.....+.++||++||..-+.++...+...+
T Consensus 114 ~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~ 186 (300)
T 3fmo_B 114 RPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMG 186 (300)
T ss_dssp SCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHH
Confidence 5788999999999985 789999999999998744 555554443345589999999999999888776653
No 101
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=96.97 E-value=0.00023 Score=68.92 Aligned_cols=44 Identities=64% Similarity=0.881 Sum_probs=41.1
Q ss_pred cccChhhHHHhccCHHHHHhhhcCceeeccccccccccccchHH
Q psy12659 895 YRITPRYLLLAIKNDVELSQLLSDVTIAQGGVMPNIQSMKFDKT 938 (1051)
Q Consensus 895 sritpr~l~laVrnd~eL~~LL~~vtIs~ggvlp~i~k~ll~k~ 938 (1051)
.+++|+|+.+++++|+||..++.+++|++||++|++|+.++.++
T Consensus 75 krItp~hi~lAI~nDeEL~~Ll~~vtia~ggvlp~i~~~l~~k~ 118 (123)
T 2nqb_C 75 TRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKK 118 (123)
T ss_dssp SEECHHHHHHHHHTSHHHHHHTTTEEETTCCCCCCCCGGGSSCC
T ss_pred ccccHHHHHHHHhccHHHHHHhcCceeCCCCcCCCccHHHcCcc
Confidence 47899999999999999999999999999999999999998554
No 102
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=96.96 E-value=0.0016 Score=83.21 Aligned_cols=70 Identities=23% Similarity=0.142 Sum_probs=61.5
Q ss_pred CCCCCCHHHHHHHHHhcCCCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhC
Q psy12659 174 NTIPFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISL 245 (1051)
Q Consensus 174 ~~~~ln~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~~ 245 (1051)
.++.|++.|.+||...+...-.+|.||+|+|||.+..-.+..+... +.++||++|+...+.++.+++.+.
T Consensus 36 ~~f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~--g~~vlvl~PtraLa~Q~~~~l~~~ 105 (997)
T 4a4z_A 36 WPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN--MTKTIYTSPIKALSNQKFRDFKET 105 (997)
T ss_dssp CSSCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHH
Confidence 3467899999999999988889999999999999877777666655 789999999999999999999875
No 103
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=96.94 E-value=0.0023 Score=79.61 Aligned_cols=71 Identities=21% Similarity=0.301 Sum_probs=60.9
Q ss_pred CCCCCHHHHHHHHHhcCCCeEEEEccCCCChHHHHHHHHHHHHHcCC---CCeEEEEeCCHHHHHHHHHHHHhC
Q psy12659 175 TIPFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFP---HQRTLIVTHSNQALNQLFEKIISL 245 (1051)
Q Consensus 175 ~~~ln~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p---~~riLv~a~SN~Avd~l~~rl~~~ 245 (1051)
...+++.|.+||..++...-.+|.+|.|+|||.+....+...+...+ +.++||++||..-+.+..+.+.+.
T Consensus 246 ~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~ 319 (797)
T 4a2q_A 246 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHH 319 (797)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 46899999999999988777999999999999998888887777665 789999999999989988877664
No 104
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=96.94 E-value=0.00028 Score=68.85 Aligned_cols=44 Identities=61% Similarity=0.871 Sum_probs=40.7
Q ss_pred cccChhhHHHhccCHHHHHhhhcCceeeccccccccccccchHH
Q psy12659 895 YRITPRYLLLAIKNDVELSQLLSDVTIAQGGVMPNIQSMKFDKT 938 (1051)
Q Consensus 895 sritpr~l~laVrnd~eL~~LL~~vtIs~ggvlp~i~k~ll~k~ 938 (1051)
.+++|+|+.++++||+||..++.+++|++||++|++|+.++.++
T Consensus 77 krItp~hi~lAI~nDeEL~~L~~~vtIa~ggvlP~i~~~l~~k~ 120 (129)
T 1tzy_A 77 TRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120 (129)
T ss_dssp SEECHHHHHHHHHTSHHHHHHTTTEEETTCCCCCCCCGGGSCC-
T ss_pred CeEcHHHHHHHHhccHHHHHHhCCCeecCCCcCCCCCHHHcCcc
Confidence 47899999999999999999999999999999999999998654
No 105
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=96.93 E-value=0.00026 Score=69.27 Aligned_cols=45 Identities=60% Similarity=0.834 Sum_probs=41.4
Q ss_pred ccccChhhHHHhccCHHHHHhhhcCceeeccccccccccccchHH
Q psy12659 894 KYRITPRYLLLAIKNDVELSQLLSDVTIAQGGVMPNIQSMKFDKT 938 (1051)
Q Consensus 894 gsritpr~l~laVrnd~eL~~LL~~vtIs~ggvlp~i~k~ll~k~ 938 (1051)
..+++|+|++++++||+||..++.+++|++||++|++|+.++.++
T Consensus 76 ~krItp~hI~lAI~nDeEL~~Ll~~vtIa~ggvlP~i~~~l~~k~ 120 (131)
T 1id3_C 76 KTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKK 120 (131)
T ss_dssp CSEECHHHHHHHHHTCHHHHHHTTTEEETTCCCCCCCCGGGSCCS
T ss_pred CceEcHHHHHHHHhccHHHHHHhcCceecCCccCCCccHHHcCcc
Confidence 347899999999999999999999999999999999999998554
No 106
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=96.92 E-value=0.00098 Score=77.36 Aligned_cols=69 Identities=17% Similarity=0.073 Sum_probs=52.7
Q ss_pred CCCHHHHHHHHHhcCC--CeEEEEccCCCChHHHHHHH-HHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhC
Q psy12659 177 PFTPTQIEAIRAGMQP--GLTLVVGPPGTGKTDVAVQI-ISNLYHNFPHQRTLIVTHSNQALNQLFEKIISL 245 (1051)
Q Consensus 177 ~ln~~Q~~Ai~~~l~~--~~~lI~GPPGTGKT~ti~~i-i~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~~ 245 (1051)
.+++.|.+|+..++.. .-.+++||.|||||.+.... +..+....++.++||++||..-+.++.+.+.+.
T Consensus 114 ~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 185 (479)
T 3fmp_B 114 RPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQM 185 (479)
T ss_dssp SCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHH
Confidence 5666799999999874 78999999999999885443 333333323448999999999999997766553
No 107
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=96.91 E-value=0.0022 Score=72.22 Aligned_cols=69 Identities=20% Similarity=0.275 Sum_probs=56.2
Q ss_pred CCCHHHHHHHHHhcCCCeEEEECCCCCChhHHH-HHHHHHHHHhCC------------------CCcEEEEecchHHHHH
Q psy12659 815 KLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVA-VQIISNLYHNFP------------------HQRTLIVTHSNQALNQ 875 (1051)
Q Consensus 815 ~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti-~~iI~~ll~~~~------------------~~riLV~a~SN~Ald~ 875 (1051)
.+++.|.+|+...+.+.-.+|++|+|||||.+. ..++..++...+ +.++||++||..-+.+
T Consensus 37 ~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q 116 (417)
T 2i4i_A 37 RPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQ 116 (417)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHH
T ss_pred CCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHHHHH
Confidence 678899999999999888999999999999864 445555554322 2579999999999999
Q ss_pred HHHHHHhc
Q psy12659 876 LFEKIISL 883 (1051)
Q Consensus 876 l~e~l~~~ 883 (1051)
+.+.+.+.
T Consensus 117 ~~~~~~~~ 124 (417)
T 2i4i_A 117 IYEEARKF 124 (417)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
No 108
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=96.90 E-value=0.00047 Score=81.24 Aligned_cols=70 Identities=14% Similarity=0.176 Sum_probs=57.5
Q ss_pred CCCHHHHHHHHHhcCC--CeEEEEccCCCChHHHHHHHHHHHH-HcCCCCeEEEEeCCHHHHHHHHHHHHhCC
Q psy12659 177 PFTPTQIEAIRAGMQP--GLTLVVGPPGTGKTDVAVQIISNLY-HNFPHQRTLIVTHSNQALNQLFEKIISLD 246 (1051)
Q Consensus 177 ~ln~~Q~~Ai~~~l~~--~~~lI~GPPGTGKT~ti~~ii~~l~-~~~p~~riLv~a~SN~Avd~l~~rl~~~~ 246 (1051)
.+++.|.+|+..+++. .-.+|++|.|||||.+....+...+ ...++.++|+++|+..-++++.+++.+.+
T Consensus 141 ~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~ 213 (508)
T 3fho_A 141 XXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMG 213 (508)
T ss_dssp ECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHS
T ss_pred CcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhC
Confidence 5788999999998875 7899999999999998665544444 33345699999999999999999998764
No 109
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.89 E-value=0.00039 Score=80.86 Aligned_cols=47 Identities=26% Similarity=0.363 Sum_probs=40.8
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHHhc
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISL 883 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~~~ 883 (1051)
..+++|.||||||||+.+.+++. .++++|+|||+.|.+++.+++...
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~~-------~~~~lVlTpT~~aa~~l~~kl~~~ 207 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRVN-------FEEDLILVPGRQAAEMIRRRANAS 207 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHCC-------TTTCEEEESCHHHHHHHHHHHTTT
T ss_pred ccEEEEEcCCCCCHHHHHHHHhc-------cCCeEEEeCCHHHHHHHHHHhhhc
Confidence 56899999999999999987753 267899999999999999999644
No 110
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=96.88 E-value=0.003 Score=81.39 Aligned_cols=81 Identities=17% Similarity=0.154 Sum_probs=63.9
Q ss_pred CCCCHHHHHHHHHhcCCCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCcEEEe
Q psy12659 176 IPFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLDVDERHLLRL 255 (1051)
Q Consensus 176 ~~ln~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~~~~~~~~lvRl 255 (1051)
+.+++.|.+|+..++...-.+|++|+|||||.+..-.+..++.. +.++||++||...+.++.+++.+.+.....+.-+
T Consensus 77 f~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~--~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l 154 (1104)
T 4ddu_A 77 KDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK--GKKSALVFPTVTLVKQTLERLQKLADEKVKIFGF 154 (1104)
T ss_dssp SCCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTT--TCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEE
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhc--CCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEE
Confidence 35789999999999987778999999999999666665555533 7899999999999999999999855222345444
Q ss_pred cCC
Q psy12659 256 GHG 258 (1051)
Q Consensus 256 G~~ 258 (1051)
..+
T Consensus 155 ~Gg 157 (1104)
T 4ddu_A 155 YSS 157 (1104)
T ss_dssp CTT
T ss_pred eCC
Confidence 433
No 111
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.88 E-value=0.00095 Score=67.11 Aligned_cols=50 Identities=24% Similarity=0.325 Sum_probs=37.7
Q ss_pred CHHHHHHHHHhc---------CCCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEe
Q psy12659 817 TFHEIEAIRAGM---------QPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVT 867 (1051)
Q Consensus 817 n~~Q~~Ai~~~l---------~~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a 867 (1051)
++.|.+|+..+. .+...+|.||||||||+++..+...+... .+.+++.+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-~g~~~~~~~ 74 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEK-KGIRGYFFD 74 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHH-SCCCCCEEE
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHH-cCCeEEEEE
Confidence 577888888775 25789999999999999999888877632 455555544
No 112
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=96.85 E-value=0.0012 Score=80.70 Aligned_cols=66 Identities=20% Similarity=0.182 Sum_probs=57.1
Q ss_pred CCCHHHHHHHHHhcCCCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHh
Q psy12659 177 PFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIIS 244 (1051)
Q Consensus 177 ~ln~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~ 244 (1051)
.|++.|.+|+....+....+|+||+|+|||.++...+...+.+ +.++++++|+...+.+..+++..
T Consensus 25 ~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~--~~~~l~i~P~r~La~q~~~~~~~ 90 (702)
T 2p6r_A 25 ELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK--GGKSLYVVPLRALAGEKYESFKK 90 (702)
T ss_dssp CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh--CCcEEEEeCcHHHHHHHHHHHHH
Confidence 6788999999998888889999999999999987666555544 67999999999999999999953
No 113
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=96.81 E-value=0.0024 Score=79.38 Aligned_cols=71 Identities=20% Similarity=0.287 Sum_probs=61.6
Q ss_pred CCCCCHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHHHHHHhCC---CCcEEEEecchHHHHHHHHHHHhc
Q psy12659 813 PFKLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFP---HQRTLIVTHSNQALNQLFEKIISL 883 (1051)
Q Consensus 813 ~~~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~---~~riLV~a~SN~Ald~l~e~l~~~ 883 (1051)
.+.+.+.|.+||..++.+.-.+|.+|.|+|||.+....+...+...+ +.++||++|+..-+.+..+.+.+.
T Consensus 246 ~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~ 319 (797)
T 4a2q_A 246 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHH 319 (797)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 56889999999999999888999999999999998888888887555 789999999999999988877664
No 114
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=96.81 E-value=0.0023 Score=81.74 Aligned_cols=70 Identities=24% Similarity=0.235 Sum_probs=60.2
Q ss_pred CCCCCCHHHHHHHHHhcCCCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhC
Q psy12659 174 NTIPFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISL 245 (1051)
Q Consensus 174 ~~~~ln~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~~ 245 (1051)
..+.|++.|.+||.......-.+|++|.|+|||.+..-.+...+.. +.++|+++|+..-+++..+.+.+.
T Consensus 83 ~~f~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~--g~rvL~l~PtkaLa~Q~~~~l~~~ 152 (1010)
T 2xgj_A 83 YPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN--KQRVIYTSPIKALSNQKYRELLAE 152 (1010)
T ss_dssp CSSCCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc--CCeEEEECChHHHHHHHHHHHHHH
Confidence 3467999999999998887789999999999999887666666655 789999999999999999888764
No 115
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=96.81 E-value=0.0019 Score=79.02 Aligned_cols=66 Identities=23% Similarity=0.255 Sum_probs=55.7
Q ss_pred CCCHHHHHHHHH-hcCCCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHH
Q psy12659 815 KLTFHEIEAIRA-GMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKII 881 (1051)
Q Consensus 815 ~Ln~~Q~~Ai~~-~l~~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~ 881 (1051)
.+++.|.+|+.. ...+...+|+||+|+|||..+...+...+.. .+.++++++|+...+.+..+++.
T Consensus 30 ~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~-~~~~il~i~P~r~La~q~~~~~~ 96 (715)
T 2va8_A 30 KLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK-NGGKAIYVTPLRALTNEKYLTFK 96 (715)
T ss_dssp BCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH-SCSEEEEECSCHHHHHHHHHHHG
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH-CCCeEEEEeCcHHHHHHHHHHHH
Confidence 689999999999 4568899999999999999996666544432 46899999999999999999884
No 116
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=96.80 E-value=0.00044 Score=67.44 Aligned_cols=44 Identities=50% Similarity=0.685 Sum_probs=37.8
Q ss_pred cccChhhHHHhccCHHHHHhhhcCceeeccccccccccccchHHH
Q psy12659 895 YRITPRYLLLAIKNDVELSQLLSDVTIAQGGVMPNIQSMKFDKTL 939 (1051)
Q Consensus 895 sritpr~l~laVrnd~eL~~LL~~vtIs~ggvlp~i~k~ll~k~~ 939 (1051)
.+++|+|+++++++|+||..++.. +|++||++|++|+.++.++-
T Consensus 80 krItprhi~lAI~nDeEL~~Ll~~-tia~ggv~P~i~~~l~~k~~ 123 (128)
T 1f66_C 80 KRITPRHLQLAIRGDEELDSLIKA-TIAGGGVIPHIHKSLIGKKG 123 (128)
T ss_dssp SEECHHHHHHHHHHSHHHHHHCCS-EETTCCCCCCCCGGGC----
T ss_pred CeEcHHHHHHHHhccHHHhhhhcc-eecCCccCCCCCHHhcCccc
Confidence 478999999999999999999964 99999999999999987653
No 117
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=96.79 E-value=0.00058 Score=80.47 Aligned_cols=70 Identities=13% Similarity=0.144 Sum_probs=57.6
Q ss_pred CCCHHHHHHHHHhcCC--CeEEEECCCCCChhHHHHHHHHHHHH-hCCCCcEEEEecchHHHHHHHHHHHhcC
Q psy12659 815 KLTFHEIEAIRAGMQP--GLTLVVGPPGTGKTDVAVQIISNLYH-NFPHQRTLIVTHSNQALNQLFEKIISLD 884 (1051)
Q Consensus 815 ~Ln~~Q~~Ai~~~l~~--~~tlIqGPPGTGKT~ti~~iI~~ll~-~~~~~riLV~a~SN~Ald~l~e~l~~~~ 884 (1051)
.+++.|.+|+..++.. .-++|++|.|||||.+....+...+. ..++.++||++|+..-++++.+.+.+.+
T Consensus 141 ~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~ 213 (508)
T 3fho_A 141 XXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMG 213 (508)
T ss_dssp ECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHS
T ss_pred CcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhC
Confidence 3567799999999986 88999999999999987665555443 3345699999999999999999997753
No 118
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=96.79 E-value=0.0027 Score=73.13 Aligned_cols=70 Identities=21% Similarity=0.231 Sum_probs=57.6
Q ss_pred CCCHHHHHHHHHhcCCCeEEEEccCCCChHHHHH-HHHHHHHHcC-----CCCeEEEEeCCHHHHHHHHHHHHhCC
Q psy12659 177 PFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAV-QIISNLYHNF-----PHQRTLIVTHSNQALNQLFEKIISLD 246 (1051)
Q Consensus 177 ~ln~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~-~ii~~l~~~~-----p~~riLv~a~SN~Avd~l~~rl~~~~ 246 (1051)
.+++-|.+|+..+++..-.++++|.|||||.... -++..++... .+.++||++||..-+.++.+.+.+.+
T Consensus 78 ~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 153 (434)
T 2db3_A 78 IPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFA 153 (434)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHh
Confidence 5789999999999987789999999999998644 4556666542 24689999999999999998887754
No 119
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.79 E-value=0.0015 Score=65.56 Aligned_cols=50 Identities=26% Similarity=0.290 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHhc---------CCCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEE
Q psy12659 178 FTPTQIEAIRAGM---------QPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIV 228 (1051)
Q Consensus 178 ln~~Q~~Ai~~~l---------~~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~ 228 (1051)
-++.|.+|+..+. .....+|.||||||||+++..+...+.... +.+++.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~-g~~~~~~ 73 (180)
T 3ec2_A 15 KNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKK-GIRGYFF 73 (180)
T ss_dssp CSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHS-CCCCCEE
T ss_pred CCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHc-CCeEEEE
Confidence 3678998887653 246789999999999999999888776332 4455444
No 120
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=96.79 E-value=0.00079 Score=81.80 Aligned_cols=73 Identities=18% Similarity=0.252 Sum_probs=60.4
Q ss_pred CCCCCCHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHHHHHHhCCC----CcEEEEecchHHHHHH-HHHHHhcC
Q psy12659 812 PPFKLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPH----QRTLIVTHSNQALNQL-FEKIISLD 884 (1051)
Q Consensus 812 ~~~~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~----~riLV~a~SN~Ald~l-~e~l~~~~ 884 (1051)
+++.+.+.|.+||..++.+.-++|.+|.|+|||.++...+..++...++ .++||++|+..-+.+. .+.+.+.+
T Consensus 4 ~~~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~ 81 (699)
T 4gl2_A 4 AMLQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 81 (699)
T ss_dssp ---CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHH
T ss_pred CCCCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHc
Confidence 4568999999999999998889999999999999998888877664333 8999999999888888 77776653
No 121
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=96.79 E-value=0.00079 Score=81.81 Aligned_cols=83 Identities=18% Similarity=0.267 Sum_probs=63.4
Q ss_pred CCCCCHHHHHHHHHhcCCCeEEEEccCCCChHHHHHHHHHHHHHcCCC----CeEEEEeCCHHHHHHH-HHHHHhCCCCC
Q psy12659 175 TIPFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPH----QRTLIVTHSNQALNQL-FEKIISLDVDE 249 (1051)
Q Consensus 175 ~~~ln~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~----~riLv~a~SN~Avd~l-~~rl~~~~~~~ 249 (1051)
.+.|.+.|.+||..++...-.+|.+|.|+|||.+....+..++...++ .++||++|+..-+.+. .+.+.+.+-..
T Consensus 5 ~~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~ 84 (699)
T 4gl2_A 5 MLQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKW 84 (699)
T ss_dssp --CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTTT
T ss_pred CCCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCcC
Confidence 368999999999999987779999999999999998888777655323 7999999999888888 77776653221
Q ss_pred CcEEEecC
Q psy12659 250 RHLLRLGH 257 (1051)
Q Consensus 250 ~~lvRlG~ 257 (1051)
..+..+..
T Consensus 85 ~~v~~~~g 92 (699)
T 4gl2_A 85 YRVIGLSG 92 (699)
T ss_dssp SCEEEEC-
T ss_pred ceEEEEeC
Confidence 34444443
No 122
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=96.79 E-value=0.0014 Score=81.47 Aligned_cols=70 Identities=26% Similarity=0.237 Sum_probs=60.0
Q ss_pred CCCCCCHHHHHHHHHhcCC------CeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHHhc
Q psy12659 812 PPFKLTFHEIEAIRAGMQP------GLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISL 883 (1051)
Q Consensus 812 ~~~~Ln~~Q~~Ai~~~l~~------~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~~~ 883 (1051)
.||.+++.|.+||..++.. .-.+|+||.|+|||.++...+...+. .+.+++|++||..-+.+..+.+.+.
T Consensus 365 lpf~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~--~g~qvlvlaPtr~La~Q~~~~l~~~ 440 (780)
T 1gm5_A 365 LPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYE--AGFQTAFMVPTSILAIQHYRRTVES 440 (780)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHH--HTSCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCcHHHHHHHHHHHHHH
Confidence 4569999999999987652 46899999999999999888877776 5789999999999999999888664
No 123
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=96.75 E-value=0.0048 Score=73.01 Aligned_cols=69 Identities=20% Similarity=0.189 Sum_probs=54.0
Q ss_pred CCCCHHHHHHHHHhc--CCCeEEEEccCCCChHHHHHHHH-HHHHHcC----CCCeEEEEeCCHHHHHHHHHHHHh
Q psy12659 176 IPFTPTQIEAIRAGM--QPGLTLVVGPPGTGKTDVAVQII-SNLYHNF----PHQRTLIVTHSNQALNQLFEKIIS 244 (1051)
Q Consensus 176 ~~ln~~Q~~Ai~~~l--~~~~~lI~GPPGTGKT~ti~~ii-~~l~~~~----p~~riLv~a~SN~Avd~l~~rl~~ 244 (1051)
..+++.|.+||..++ ...-.+|++|.|||||.+..-.+ ..+.... .+.++||++||..-+.++.+.+.+
T Consensus 93 ~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~ 168 (563)
T 3i5x_A 93 PGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKK 168 (563)
T ss_dssp SSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHH
Confidence 368999999999988 45678999999999998755544 4444321 124899999999999999988876
No 124
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=96.75 E-value=0.0016 Score=79.84 Aligned_cols=66 Identities=18% Similarity=0.319 Sum_probs=56.0
Q ss_pred CCCHHHHHHHHH-hcCCCeEEEEccCCCChHHHHHH-HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHh
Q psy12659 177 PFTPTQIEAIRA-GMQPGLTLVVGPPGTGKTDVAVQ-IISNLYHNFPHQRTLIVTHSNQALNQLFEKIIS 244 (1051)
Q Consensus 177 ~ln~~Q~~Ai~~-~l~~~~~lI~GPPGTGKT~ti~~-ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~ 244 (1051)
.|++.|.+|+.. ..+....+|+||+|+|||.++.. ++..+... +.++++++|+...+.++.+++..
T Consensus 23 ~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~~l~i~P~raLa~q~~~~~~~ 90 (720)
T 2zj8_A 23 SFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ--GGKAVYIVPLKALAEEKFQEFQD 90 (720)
T ss_dssp BCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--CSEEEEECSSGGGHHHHHHHTGG
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--CCEEEEEcCcHHHHHHHHHHHHH
Confidence 789999999998 56688899999999999998844 45555545 67999999999999999999854
No 125
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=96.75 E-value=0.0016 Score=75.53 Aligned_cols=69 Identities=14% Similarity=0.049 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHHhcCC--CeEEEECCCCCChhHHHHHHHHHHHH-hCCCCcEEEEecchHHHHHHHHHHHhc
Q psy12659 815 KLTFHEIEAIRAGMQP--GLTLVVGPPGTGKTDVAVQIISNLYH-NFPHQRTLIVTHSNQALNQLFEKIISL 883 (1051)
Q Consensus 815 ~Ln~~Q~~Ai~~~l~~--~~tlIqGPPGTGKT~ti~~iI~~ll~-~~~~~riLV~a~SN~Ald~l~e~l~~~ 883 (1051)
.+++.|.+|+..++.. .-++++||.|+|||.+....+...+. ...+.++||++|+..-+.++.+.+.+.
T Consensus 114 ~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 185 (479)
T 3fmp_B 114 RPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQM 185 (479)
T ss_dssp SCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHH
Confidence 5788899999999985 88999999999999885544433333 223448999999999999997666543
No 126
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=96.73 E-value=0.0028 Score=81.71 Aligned_cols=70 Identities=20% Similarity=0.142 Sum_probs=61.0
Q ss_pred CCCCCHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHHhcC
Q psy12659 813 PFKLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLD 884 (1051)
Q Consensus 813 ~~~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~~~~ 884 (1051)
++.+++.|.+|+..++.+.-.+|++|+|||||....-.+..++. .+.++||++||...+.++.+.+.+.+
T Consensus 76 gf~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~--~~~~~Lil~PtreLa~Q~~~~l~~l~ 145 (1104)
T 4ddu_A 76 GKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR--KGKKSALVFPTVTLVKQTLERLQKLA 145 (1104)
T ss_dssp SSCCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT--TTCCEEEEESSHHHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh--cCCeEEEEechHHHHHHHHHHHHHhh
Confidence 34788999999999999888999999999999966666666664 68899999999999999999998853
No 127
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=96.72 E-value=0.0036 Score=75.96 Aligned_cols=72 Identities=19% Similarity=0.252 Sum_probs=59.1
Q ss_pred CCCCCCHHHHHHHHHhcCCCeEEEEccCCCChHHHHHHHHHHHHHcCCC---CeEEEEeCCHHHHHHHHHHHHhC
Q psy12659 174 NTIPFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPH---QRTLIVTHSNQALNQLFEKIISL 245 (1051)
Q Consensus 174 ~~~~ln~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~---~riLv~a~SN~Avd~l~~rl~~~ 245 (1051)
+...+.+-|.++|..++...-++|.+|.|+|||......+...+...+. .++||++||..-+.+..+.+.+.
T Consensus 10 g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~ 84 (696)
T 2ykg_A 10 SPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKY 84 (696)
T ss_dssp C--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHH
Confidence 3357899999999999887779999999999999888877776665432 78999999988888888877665
No 128
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=96.70 E-value=0.0016 Score=84.61 Aligned_cols=53 Identities=28% Similarity=0.338 Sum_probs=46.1
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHHHHcC----------CCCeEEEEeCCHHHHHHHHHHHHh
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNLYHNF----------PHQRTLIVTHSNQALNQLFEKIIS 244 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l~~~~----------p~~riLv~a~SN~Avd~l~~rl~~ 244 (1051)
.+..+|..++|||||+|++..+..++... +..+||++|.||+|+.++.+||.+
T Consensus 16 ~g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~ 78 (1180)
T 1w36_B 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 (1180)
T ss_dssp SSCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHH
Confidence 35569999999999999999999988631 246899999999999999999976
No 129
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=96.68 E-value=0.002 Score=80.20 Aligned_cols=70 Identities=23% Similarity=0.201 Sum_probs=58.5
Q ss_pred CCCCCCHHHHHHHHHhcC------CCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhC
Q psy12659 174 NTIPFTPTQIEAIRAGMQ------PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISL 245 (1051)
Q Consensus 174 ~~~~ln~~Q~~Ai~~~l~------~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~~ 245 (1051)
.++.+++.|.+|+..++. +.-.+|+||.|||||.+....+...+.+ +.++++++||..-+.++.+++.+.
T Consensus 365 lpf~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~--g~qvlvlaPtr~La~Q~~~~l~~~ 440 (780)
T 1gm5_A 365 LPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA--GFQTAFMVPTSILAIQHYRRTVES 440 (780)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH--TSCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCcHHHHHHHHHHHHHH
Confidence 345899999999987653 2358999999999999988877777766 789999999999999999888764
No 130
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.66 E-value=0.0022 Score=65.42 Aligned_cols=35 Identities=29% Similarity=0.285 Sum_probs=28.4
Q ss_pred CeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEe
Q psy12659 831 GLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVT 867 (1051)
Q Consensus 831 ~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a 867 (1051)
...+|.||||||||+++..+...+.. .+.+++.+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~--~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK--RNVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT--TTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEE
Confidence 67999999999999999888877765 456676554
No 131
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=96.66 E-value=0.0005 Score=68.47 Aligned_cols=46 Identities=61% Similarity=0.841 Sum_probs=41.2
Q ss_pred ccccChhhHHHhccCHHHHHhhhcCceeeccccccccccccchHHH
Q psy12659 894 KYRITPRYLLLAIKNDVELSQLLSDVTIAQGGVMPNIQSMKFDKTL 939 (1051)
Q Consensus 894 gsritpr~l~laVrnd~eL~~LL~~vtIs~ggvlp~i~k~ll~k~~ 939 (1051)
..+++|+|+++++++|+||..++.+++|++||++|++|+.++.++-
T Consensus 95 rkrItprhI~lAI~nDeEL~~Ll~~vtIa~gGVlP~i~~~l~~k~~ 140 (149)
T 2f8n_K 95 KTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKT 140 (149)
T ss_dssp CSEECHHHHHHHHHHSHHHHHHTTTEEETTCCCCCCCCGGGSCC--
T ss_pred CCcCcHHHHHHHHhccHHHHHHhcCceEcCCCCCCCccHHHcCccc
Confidence 3478999999999999999999999999999999999999986653
No 132
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=96.64 E-value=0.0044 Score=71.36 Aligned_cols=70 Identities=19% Similarity=0.174 Sum_probs=57.5
Q ss_pred CCCHHHHHHHHHhcCCCeEEEECCCCCChhHHHH-HHHHHHHHhC-----CCCcEEEEecchHHHHHHHHHHHhcC
Q psy12659 815 KLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAV-QIISNLYHNF-----PHQRTLIVTHSNQALNQLFEKIISLD 884 (1051)
Q Consensus 815 ~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~-~iI~~ll~~~-----~~~riLV~a~SN~Ald~l~e~l~~~~ 884 (1051)
.+++.|.+||..++++.-.++++|.|||||.... -++..++... .+.++||++||..-+.++.+.+.+.+
T Consensus 78 ~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 153 (434)
T 2db3_A 78 IPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFA 153 (434)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHh
Confidence 5788999999999998889999999999998644 4555665532 24699999999999999998887653
No 133
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=96.61 E-value=0.0045 Score=73.89 Aligned_cols=69 Identities=20% Similarity=0.215 Sum_probs=54.1
Q ss_pred CCCHHHHHHHHHhc--CCCeEEEEccCCCChHHHHHHHH-HHHHHcC----CCCeEEEEeCCHHHHHHHHHHHHhC
Q psy12659 177 PFTPTQIEAIRAGM--QPGLTLVVGPPGTGKTDVAVQII-SNLYHNF----PHQRTLIVTHSNQALNQLFEKIISL 245 (1051)
Q Consensus 177 ~ln~~Q~~Ai~~~l--~~~~~lI~GPPGTGKT~ti~~ii-~~l~~~~----p~~riLv~a~SN~Avd~l~~rl~~~ 245 (1051)
.+++-|.+||..++ ...-.+|++|.|||||....-.+ ..+.... .+.++||++||..-+.++.+.+.+.
T Consensus 43 ~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~ 118 (579)
T 3sqw_A 43 GLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKI 118 (579)
T ss_dssp SCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHH
Confidence 58999999999988 45678999999999998755544 4444321 1358999999999999998888763
No 134
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.60 E-value=0.0028 Score=66.10 Aligned_cols=53 Identities=23% Similarity=0.268 Sum_probs=42.5
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHHhcCC
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLDV 885 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~~~~~ 885 (1051)
+.+++|.||||+|||+++.+++.++.. .+.+++.++.... ..++.+++...+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~--~~~~v~~~~~e~~-~~~~~~~~~~~g~ 75 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLK--MGEPGIYVALEEH-PVQVRQNMAQFGW 75 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHH--TTCCEEEEESSSC-HHHHHHHHHTTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEEccCC-HHHHHHHHHHcCC
Confidence 579999999999999999999998887 6778888876543 4667777765554
No 135
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=96.60 E-value=0.0014 Score=80.34 Aligned_cols=65 Identities=18% Similarity=0.127 Sum_probs=56.6
Q ss_pred CCCHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHH
Q psy12659 815 KLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKII 881 (1051)
Q Consensus 815 ~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~ 881 (1051)
.+++.|.+++....++.-.+|+||+|+|||.++...+...+. .+.++++++|+...+.+..+++.
T Consensus 25 ~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~--~~~~~l~i~P~r~La~q~~~~~~ 89 (702)
T 2p6r_A 25 ELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAI--KGGKSLYVVPLRALAGEKYESFK 89 (702)
T ss_dssp CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHH--hCCcEEEEeCcHHHHHHHHHHHH
Confidence 567779999999888889999999999999998766665555 46899999999999999999884
No 136
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=96.60 E-value=0.002 Score=83.62 Aligned_cols=53 Identities=28% Similarity=0.321 Sum_probs=46.2
Q ss_pred CeEEEECCCCCChhHHHHHHHHHHHHh----------CCCCcEEEEecchHHHHHHHHHHHhc
Q psy12659 831 GLTLVVGPPGTGKTDVAVQIISNLYHN----------FPHQRTLIVTHSNQALNQLFEKIISL 883 (1051)
Q Consensus 831 ~~tlIqGPPGTGKT~ti~~iI~~ll~~----------~~~~riLV~a~SN~Ald~l~e~l~~~ 883 (1051)
+..+|..++|||||+|+++.+..|+.. ....+|||+|.||+|..++.+||.+.
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 557999999999999999999999863 12469999999999999999999654
No 137
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.58 E-value=0.0024 Score=65.13 Aligned_cols=35 Identities=29% Similarity=0.297 Sum_probs=28.0
Q ss_pred CeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEe
Q psy12659 193 GLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVT 229 (1051)
Q Consensus 193 ~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a 229 (1051)
...+|.||||||||+++..+...+... +.+++.+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~--~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR--NVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE
Confidence 678999999999999999888877655 55665543
No 138
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.56 E-value=0.0039 Score=64.32 Aligned_cols=52 Identities=13% Similarity=0.160 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHhc---CCCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecc
Q psy12659 816 LTFHEIEAIRAGM---QPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHS 869 (1051)
Q Consensus 816 Ln~~Q~~Ai~~~l---~~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~S 869 (1051)
.+....+.+.... .....+|.||||||||+++..+...+.. .+.++..+..+
T Consensus 35 ~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~--~~~~~~~~~~~ 89 (242)
T 3bos_A 35 GNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANE--LERRSFYIPLG 89 (242)
T ss_dssp CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEEGG
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEEHH
Confidence 3455555665554 3678999999999999999999888776 45666666543
No 139
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=96.56 E-value=0.0045 Score=73.21 Aligned_cols=68 Identities=19% Similarity=0.121 Sum_probs=54.1
Q ss_pred CCCHHHHHHHHHhc--CCCeEEEECCCCCChhHHHHHHHHHHHHhCC-----CCcEEEEecchHHHHHHHHHHHh
Q psy12659 815 KLTFHEIEAIRAGM--QPGLTLVVGPPGTGKTDVAVQIISNLYHNFP-----HQRTLIVTHSNQALNQLFEKIIS 882 (1051)
Q Consensus 815 ~Ln~~Q~~Ai~~~l--~~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~-----~~riLV~a~SN~Ald~l~e~l~~ 882 (1051)
.+++.|.+||..++ .+.-++|++|.|||||.+..-.+.+.+...+ +.++||++||..-+.++.+.+.+
T Consensus 94 ~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~ 168 (563)
T 3i5x_A 94 GLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKK 168 (563)
T ss_dssp SCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHH
Confidence 58899999999999 4568999999999999875554444443222 24899999999999999988876
No 140
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=96.54 E-value=0.002 Score=79.09 Aligned_cols=66 Identities=14% Similarity=0.228 Sum_probs=55.7
Q ss_pred CCCHHHHHHHHH-hcCCCeEEEECCCCCChhHHHH-HHHHHHHHhCCCCcEEEEecchHHHHHHHHHHHh
Q psy12659 815 KLTFHEIEAIRA-GMQPGLTLVVGPPGTGKTDVAV-QIISNLYHNFPHQRTLIVTHSNQALNQLFEKIIS 882 (1051)
Q Consensus 815 ~Ln~~Q~~Ai~~-~l~~~~tlIqGPPGTGKT~ti~-~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~~ 882 (1051)
.+++.|.+|+.. ...+.-++|+||.|+|||.++. .++..+.. .+.++++++|+...+.+..+++..
T Consensus 23 ~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~--~~~~~l~i~P~raLa~q~~~~~~~ 90 (720)
T 2zj8_A 23 SFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILT--QGGKAVYIVPLKALAEEKFQEFQD 90 (720)
T ss_dssp BCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHH--HCSEEEEECSSGGGHHHHHHHTGG
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHh--CCCEEEEEcCcHHHHHHHHHHHHH
Confidence 688999999998 5668899999999999999884 44455554 368999999999999999999853
No 141
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=96.51 E-value=0.0054 Score=74.42 Aligned_cols=70 Identities=21% Similarity=0.288 Sum_probs=59.1
Q ss_pred CCCCHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHHHHHHhCC---CCcEEEEecchHHHHHHHHHHHhc
Q psy12659 814 FKLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFP---HQRTLIVTHSNQALNQLFEKIISL 883 (1051)
Q Consensus 814 ~~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~---~~riLV~a~SN~Ald~l~e~l~~~ 883 (1051)
..+.+.|.++|..++.+.-++|++|.|+|||..+...+.+.+...+ +.++||++||..-+.+..+.+.+.
T Consensus 12 ~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~ 84 (696)
T 2ykg_A 12 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKY 84 (696)
T ss_dssp -CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHH
Confidence 4788999999999999888999999999999998888877666433 279999999988888888887665
No 142
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.50 E-value=0.0037 Score=65.16 Aligned_cols=53 Identities=23% Similarity=0.269 Sum_probs=42.6
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhCCC
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLDV 247 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~~~~ 247 (1051)
..+++|.||||+|||+++.+++..+... +.+++.++.... ..++.+++...++
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e~~-~~~~~~~~~~~g~ 75 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVALEEH-PVQVRQNMAQFGW 75 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEESSSC-HHHHHHHHHTTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccCC-HHHHHHHHHHcCC
Confidence 5689999999999999999999888865 678888875543 4677777776655
No 143
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.50 E-value=0.0037 Score=64.45 Aligned_cols=51 Identities=14% Similarity=0.180 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHhc---CCCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeC
Q psy12659 178 FTPTQIEAIRAGM---QPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTH 230 (1051)
Q Consensus 178 ln~~Q~~Ai~~~l---~~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~ 230 (1051)
-+....+.+.... .....+|.||||||||+++..+...+... +.+++.+..
T Consensus 35 ~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~ 88 (242)
T 3bos_A 35 GNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPL 88 (242)
T ss_dssp CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEG
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEH
Confidence 3455666665543 36779999999999999999998887765 556666654
No 144
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=96.49 E-value=0.0052 Score=73.35 Aligned_cols=69 Identities=19% Similarity=0.141 Sum_probs=54.4
Q ss_pred CCCHHHHHHHHHhc--CCCeEEEECCCCCChhHHHHHHHHH-HHHhC----CCCcEEEEecchHHHHHHHHHHHhc
Q psy12659 815 KLTFHEIEAIRAGM--QPGLTLVVGPPGTGKTDVAVQIISN-LYHNF----PHQRTLIVTHSNQALNQLFEKIISL 883 (1051)
Q Consensus 815 ~Ln~~Q~~Ai~~~l--~~~~tlIqGPPGTGKT~ti~~iI~~-ll~~~----~~~riLV~a~SN~Ald~l~e~l~~~ 883 (1051)
.+++.|.+||..++ .+.-.+|++|.|||||.+..-.+.. +.... .+.++||++||..-+.++.+.+.+.
T Consensus 43 ~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~ 118 (579)
T 3sqw_A 43 GLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKI 118 (579)
T ss_dssp SCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHH
Confidence 57889999999999 5678999999999999875554444 43321 1358999999999999998888763
No 145
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=96.48 E-value=0.0046 Score=80.10 Aligned_cols=70 Identities=26% Similarity=0.318 Sum_probs=58.3
Q ss_pred CCCCCCHHHHHHHHHhcC----CC--eEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHHhc
Q psy12659 812 PPFKLTFHEIEAIRAGMQ----PG--LTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISL 883 (1051)
Q Consensus 812 ~~~~Ln~~Q~~Ai~~~l~----~~--~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~~~ 883 (1051)
.+|.+++.|.+||..++. +. -.+|+||.|+|||.++...+..++. .+.++||++||..-+.+..+.+.+.
T Consensus 600 f~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~--~g~~vlvlvPt~~La~Q~~~~~~~~ 675 (1151)
T 2eyq_A 600 FPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD--NHKQVAVLVPTTLLAQQHYDNFRDR 675 (1151)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT--TTCEEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH--hCCeEEEEechHHHHHHHHHHHHHH
Confidence 456789999999998876 32 6899999999999988766655555 6789999999999999999888754
No 146
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=96.48 E-value=0.0047 Score=78.32 Aligned_cols=71 Identities=21% Similarity=0.301 Sum_probs=59.7
Q ss_pred CCCCCHHHHHHHHHhcCCCeEEEEccCCCChHHHHHHHHHHHHHcCC---CCeEEEEeCCHHHHHHHHHHHHhC
Q psy12659 175 TIPFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFP---HQRTLIVTHSNQALNQLFEKIISL 245 (1051)
Q Consensus 175 ~~~ln~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p---~~riLv~a~SN~Avd~l~~rl~~~ 245 (1051)
...+.+-|.+||..++...-.+|.+|.|+|||.+....+...+...+ +.++||++||..-+.+..+.+.+.
T Consensus 246 ~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~ 319 (936)
T 4a2w_A 246 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHH 319 (936)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 46789999999999988777999999999999988887777766655 779999999998888888777654
No 147
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=96.40 E-value=0.0041 Score=78.84 Aligned_cols=71 Identities=20% Similarity=0.287 Sum_probs=60.6
Q ss_pred CCCCCHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHHHHHHhCC---CCcEEEEecchHHHHHHHHHHHhc
Q psy12659 813 PFKLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFP---HQRTLIVTHSNQALNQLFEKIISL 883 (1051)
Q Consensus 813 ~~~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~---~~riLV~a~SN~Ald~l~e~l~~~ 883 (1051)
.+.+.+.|.+||..++.+.-.+|.+|.|+|||.+....+...+...+ +.++||++||..-+.+..+.+.+.
T Consensus 246 ~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~ 319 (936)
T 4a2w_A 246 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHH 319 (936)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 56889999999999999888999999999999998888877776544 789999999999999988877664
No 148
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.40 E-value=0.005 Score=60.64 Aligned_cols=39 Identities=21% Similarity=0.392 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcC---CCeEEEEccCCCChHHHHHHHHHHHHH
Q psy12659 180 PTQIEAIRAGMQ---PGLTLVVGPPGTGKTDVAVQIISNLYH 218 (1051)
Q Consensus 180 ~~Q~~Ai~~~l~---~~~~lI~GPPGTGKT~ti~~ii~~l~~ 218 (1051)
+.+.+.+...+. ++..+|.||||||||+++..+...+..
T Consensus 28 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 28 DEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp HHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 456666655543 467899999999999999999887765
No 149
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=96.31 E-value=0.0061 Score=78.93 Aligned_cols=69 Identities=28% Similarity=0.343 Sum_probs=56.5
Q ss_pred CCCCCHHHHHHHHHhcC----CC--eEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhC
Q psy12659 175 TIPFTPTQIEAIRAGMQ----PG--LTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISL 245 (1051)
Q Consensus 175 ~~~ln~~Q~~Ai~~~l~----~~--~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~~ 245 (1051)
.+.+++.|.+||..++. .. -.+|+||.|+|||.++...+..+... +.++||++||..-+.+..+.+.+.
T Consensus 601 ~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~--g~~vlvlvPt~~La~Q~~~~~~~~ 675 (1151)
T 2eyq_A 601 PFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN--HKQVAVLVPTTLLAQQHYDNFRDR 675 (1151)
T ss_dssp CSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh--CCeEEEEechHHHHHHHHHHHHHH
Confidence 45679999999988764 22 68999999999999877665555544 779999999999999999988753
No 150
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=96.31 E-value=0.0054 Score=78.08 Aligned_cols=70 Identities=19% Similarity=0.163 Sum_probs=60.1
Q ss_pred CCCCCCHHHHHHHHHhcC--CCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHHh
Q psy12659 812 PPFKLTFHEIEAIRAGMQ--PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIIS 882 (1051)
Q Consensus 812 ~~~~Ln~~Q~~Ai~~~l~--~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~~ 882 (1051)
+.+.|.+.|.+|+..++. ++-.++.+|.|+|||.++..++..++...+.+++||++|+ ..+.+....+.+
T Consensus 150 ~~~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~ 221 (968)
T 3dmq_A 150 QRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLR 221 (968)
T ss_dssp CSSCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHH
Confidence 446899999999999887 5578999999999999999999999986666799999999 777887777744
No 151
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.24 E-value=0.0064 Score=59.85 Aligned_cols=39 Identities=23% Similarity=0.380 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcC---CCeEEEECCCCCChhHHHHHHHHHHHH
Q psy12659 818 FHEIEAIRAGMQ---PGLTLVVGPPGTGKTDVAVQIISNLYH 856 (1051)
Q Consensus 818 ~~Q~~Ai~~~l~---~~~tlIqGPPGTGKT~ti~~iI~~ll~ 856 (1051)
..+.+.+...+. +...+|.||||||||+++..+...+..
T Consensus 28 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 28 DEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp HHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 445566655554 467899999999999999988887765
No 152
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.17 E-value=0.0047 Score=63.28 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=33.4
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecc
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHS 869 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~S 869 (1051)
..+.+|.||||+|||+++.+++..+.. .+.+++++.+.
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~--~g~~v~~~~~~ 40 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKL--GKKKVAVFKPK 40 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH--TTCEEEEEEEC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeec
Confidence 468899999999999999999998877 67889998765
No 153
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.15 E-value=0.0035 Score=70.03 Aligned_cols=53 Identities=11% Similarity=0.098 Sum_probs=35.8
Q ss_pred CCCeEEEEccCCCChHHHHHHHHHHHHHcCC-----CCe-EEEEeC----CHHHHHHHHHHHH
Q psy12659 191 QPGLTLVVGPPGTGKTDVAVQIISNLYHNFP-----HQR-TLIVTH----SNQALNQLFEKII 243 (1051)
Q Consensus 191 ~~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p-----~~r-iLv~a~----SN~Avd~l~~rl~ 243 (1051)
.++..+|.||||||||+++..++..+..... .-. +-|-|. ...+...|.+.|.
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~ 106 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAIS 106 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHS
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhc
Confidence 3677899999999999999999998875421 112 223333 2356666776664
No 154
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.13 E-value=0.0054 Score=62.82 Aligned_cols=38 Identities=18% Similarity=0.291 Sum_probs=33.3
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCC
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHS 231 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~S 231 (1051)
..+.+|.||||+||||++.+++..+... +.+++++.+.
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~--g~~v~~~~~~ 40 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLG--KKKVAVFKPK 40 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT--TCEEEEEEEC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeec
Confidence 4578999999999999999999888766 7889998776
No 155
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=96.03 E-value=0.015 Score=67.57 Aligned_cols=71 Identities=15% Similarity=0.102 Sum_probs=57.2
Q ss_pred CCCCCCHHHHHHHHHhc----CCCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhC
Q psy12659 174 NTIPFTPTQIEAIRAGM----QPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISL 245 (1051)
Q Consensus 174 ~~~~ln~~Q~~Ai~~~l----~~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~~ 245 (1051)
....|.+-|.+||.... ...-.++.-|.|+|||-++..++..+....+..++||+||+. .+.+..+.+.+.
T Consensus 34 ~~~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~-l~~qw~~e~~~~ 108 (500)
T 1z63_A 34 IKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLS-VLKNWEEELSKF 108 (500)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECST-THHHHHHHHHHH
T ss_pred hhccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccHH-HHHHHHHHHHHH
Confidence 34679999999997653 244467888999999999999999888776678999999976 568888887765
No 156
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=96.02 E-value=0.0098 Score=75.71 Aligned_cols=68 Identities=19% Similarity=0.202 Sum_probs=58.2
Q ss_pred CCCCHHHHHHHHHhcC--CCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHh
Q psy12659 176 IPFTPTQIEAIRAGMQ--PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIIS 244 (1051)
Q Consensus 176 ~~ln~~Q~~Ai~~~l~--~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~ 244 (1051)
+.|.+.|.+|+..++. .+-.+|.+|.|+|||.++..++..++...+..++||++|+ ..+.+-...+.+
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~ 221 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLR 221 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHH
Confidence 6899999999998775 4568999999999999999999999987666799999999 667777777743
No 157
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.97 E-value=0.0054 Score=68.50 Aligned_cols=28 Identities=11% Similarity=0.202 Sum_probs=25.1
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHHHHh
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNLYHN 857 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ll~~ 857 (1051)
++..+|.||||||||.++..++..+-..
T Consensus 45 ~~~lli~GpPGTGKT~~v~~v~~~L~~~ 72 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVNDVMDELITS 72 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 6788999999999999999999988753
No 158
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=95.96 E-value=0.0098 Score=76.37 Aligned_cols=67 Identities=18% Similarity=0.137 Sum_probs=56.4
Q ss_pred CCCCHHHHHHHHHhcCCCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhC
Q psy12659 176 IPFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISL 245 (1051)
Q Consensus 176 ~~ln~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~~ 245 (1051)
+.+ +-|.+|+..++...-.+|+||.|||||.+..-++..+... +.++||++||..-+.++.+.+.+.
T Consensus 56 ~~p-~iQ~~ai~~il~g~dvlv~apTGSGKTl~~lp~l~~~~~~--~~~~lil~PtreLa~Q~~~~l~~l 122 (1054)
T 1gku_B 56 EPR-AIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALK--GKRCYVIFPTSLLVIQAAETIRKY 122 (1054)
T ss_dssp SCC-HHHHHHHHHHHTTCCEECCCCBTSCSHHHHHHHHHHHHTT--SCCEEEEESCHHHHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHHhhc--CCeEEEEeccHHHHHHHHHHHHHH
Confidence 346 8999999999988789999999999998666666666544 779999999999999999888764
No 159
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.95 E-value=0.005 Score=60.71 Aligned_cols=39 Identities=21% Similarity=0.360 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcC---CCeEEEEccCCCChHHHHHHHHHHHHH
Q psy12659 180 PTQIEAIRAGMQ---PGLTLVVGPPGTGKTDVAVQIISNLYH 218 (1051)
Q Consensus 180 ~~Q~~Ai~~~l~---~~~~lI~GPPGTGKT~ti~~ii~~l~~ 218 (1051)
+.+.+.+...+. .+..+|.||||||||+++..+...+..
T Consensus 28 ~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 28 DTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp HHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 345555554432 556799999999999999999887765
No 160
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.94 E-value=0.0064 Score=61.31 Aligned_cols=41 Identities=29% Similarity=0.526 Sum_probs=30.7
Q ss_pred CHHHHHHHHHhcC---CCeEEEEccCCCChHHHHHHHHHHHHHc
Q psy12659 179 TPTQIEAIRAGMQ---PGLTLVVGPPGTGKTDVAVQIISNLYHN 219 (1051)
Q Consensus 179 n~~Q~~Ai~~~l~---~~~~lI~GPPGTGKT~ti~~ii~~l~~~ 219 (1051)
.+...+.+...+. .+..+|.||||||||+++..+...+...
T Consensus 22 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~ 65 (226)
T 2chg_A 22 QDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGE 65 (226)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred cHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 4566666665543 3358999999999999999988877654
No 161
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.93 E-value=0.013 Score=68.13 Aligned_cols=54 Identities=22% Similarity=0.321 Sum_probs=39.7
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEe-c--chHHHHHHHHHHHhcCC
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVT-H--SNQALNQLFEKIISLDV 885 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a-~--SN~Ald~l~e~l~~~~~ 885 (1051)
+.+.+|.||||+|||||++.+...+.. .+.+|++++ . ...|.+++...-...++
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~--~G~kVllv~~D~~R~aa~eqL~~~~~~~gv 156 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQK--RGYKVGVVCSDTWRPGAYHQLRQLLDRYHI 156 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEEECCCSSTHHHHHHHHHHGGGTC
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHH--CCCeEEEEeCCCcchhHHHHHHHHHHhcCC
Confidence 568999999999999999999988776 678887766 2 34566665544444444
No 162
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.93 E-value=0.011 Score=60.66 Aligned_cols=53 Identities=19% Similarity=0.303 Sum_probs=39.8
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhCCC
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLDV 247 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~~~~ 247 (1051)
..+++|.||||+|||+++..++..+... +.++++++.... .+++..++...+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~--~~~v~~~~~~~~-~~~~~~~~~~~~~ 75 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRD--GDPCIYVTTEES-RDSIIRQAKQFNW 75 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEESSSC-HHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEEcccC-HHHHHHHHHHhcc
Confidence 4689999999999999999999877765 667888775442 4556666655544
No 163
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=95.92 E-value=0.01 Score=76.21 Aligned_cols=65 Identities=15% Similarity=0.087 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHHhc
Q psy12659 816 LTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISL 883 (1051)
Q Consensus 816 Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~~~ 883 (1051)
+ +.|.+|+..++.+.-++|+||.|||||..+.-++..+.. .+.++||++||..-+.++.+.+.+.
T Consensus 58 p-~iQ~~ai~~il~g~dvlv~apTGSGKTl~~lp~l~~~~~--~~~~~lil~PtreLa~Q~~~~l~~l 122 (1054)
T 1gku_B 58 R-AIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLAL--KGKRCYVIFPTSLLVIQAAETIRKY 122 (1054)
T ss_dssp C-HHHHHHHHHHHTTCCEECCCCBTSCSHHHHHHHHHHHHT--TSCCEEEEESCHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHHhh--cCCeEEEEeccHHHHHHHHHHHHHH
Confidence 5 889999999999888999999999999866666666655 6789999999999999999988765
No 164
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.90 E-value=0.0077 Score=60.73 Aligned_cols=50 Identities=24% Similarity=0.365 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcC---CCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEe
Q psy12659 818 FHEIEAIRAGMQ---PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVT 867 (1051)
Q Consensus 818 ~~Q~~Ai~~~l~---~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a 867 (1051)
....+.+...+. .+..+|.||||||||+++..+...+........++.+.
T Consensus 23 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~ 75 (226)
T 2chg_A 23 DEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN 75 (226)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEE
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEec
Confidence 445556665554 23599999999999999998888776532233344443
No 165
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.86 E-value=0.0093 Score=58.76 Aligned_cols=38 Identities=21% Similarity=0.368 Sum_probs=28.3
Q ss_pred HHHHHHHHhcC---CCeEEEECCCCCChhHHHHHHHHHHHH
Q psy12659 819 HEIEAIRAGMQ---PGLTLVVGPPGTGKTDVAVQIISNLYH 856 (1051)
Q Consensus 819 ~Q~~Ai~~~l~---~~~tlIqGPPGTGKT~ti~~iI~~ll~ 856 (1051)
.+.+.+...+. ....+|.||||||||+++..+...+..
T Consensus 29 ~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 29 TEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp HHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34444444433 567899999999999999988887654
No 166
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.86 E-value=0.0094 Score=74.09 Aligned_cols=66 Identities=15% Similarity=0.117 Sum_probs=50.4
Q ss_pred CHHHHHHHHHhcC-CCeEEEEccCCCChHHHHHHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHHHh
Q psy12659 179 TPTQIEAIRAGMQ-PGLTLVVGPPGTGKTDVAVQIISNLYHNF-PHQRTLIVTHSNQALNQLFEKIIS 244 (1051)
Q Consensus 179 n~~Q~~Ai~~~l~-~~~~lI~GPPGTGKT~ti~~ii~~l~~~~-p~~riLv~a~SN~Avd~l~~rl~~ 244 (1051)
...|.++|..++. ....+|.||+|+|||+.+..++....... .+.++++++|+..++.++.+++.+
T Consensus 95 ~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~ 162 (773)
T 2xau_A 95 VHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAE 162 (773)
T ss_dssp GGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHH
Confidence 3478888888875 56899999999999997666643322111 256799999999999999988865
No 167
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.84 E-value=0.0076 Score=59.58 Aligned_cols=51 Identities=12% Similarity=0.181 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEec
Q psy12659 815 KLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTH 868 (1051)
Q Consensus 815 ~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~ 868 (1051)
..|.....++... .....+|.||||||||+++..+...+.. .+.+++.+..
T Consensus 22 g~n~~~~~~l~~~-~g~~~~l~G~~G~GKTtL~~~i~~~~~~--~g~~~~~~~~ 72 (149)
T 2kjq_A 22 TENAELVYVLRHK-HGQFIYVWGEEGAGKSHLLQAWVAQALE--AGKNAAYIDA 72 (149)
T ss_dssp CCTHHHHHHCCCC-CCSEEEEESSSTTTTCHHHHHHHHHHHT--TTCCEEEEET
T ss_pred CccHHHHHHHHhc-CCCEEEEECCCCCCHHHHHHHHHHHHHh--cCCcEEEEcH
Confidence 5677777777666 6778999999999999999888776654 4555555543
No 168
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.84 E-value=0.015 Score=63.92 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=29.7
Q ss_pred CeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecc
Q psy12659 831 GLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHS 869 (1051)
Q Consensus 831 ~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~S 869 (1051)
...+|.||||||||+++..+...+.. .+.+++.+..+
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~--~~~~~~~i~~~ 74 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKK--RGYRVIYSSAD 74 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHH--TTCCEEEEEHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHH--CCCEEEEEEHH
Confidence 57999999999999999988888776 35667666543
No 169
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.81 E-value=0.013 Score=60.23 Aligned_cols=53 Identities=19% Similarity=0.285 Sum_probs=39.0
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHHhcCC
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLDV 885 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~~~~~ 885 (1051)
+.+++|.||||+|||+++..+...+.. .+.+|++++.... .+.+..++...+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~--~~~~v~~~~~~~~-~~~~~~~~~~~~~ 75 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLR--DGDPCIYVTTEES-RDSIIRQAKQFNW 75 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHH--HTCCEEEEESSSC-HHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH--CCCeEEEEEcccC-HHHHHHHHHHhcc
Confidence 568999999999999999999987776 4667888775442 4455555554443
No 170
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.78 E-value=0.0079 Score=59.48 Aligned_cols=51 Identities=12% Similarity=0.191 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHhcCCCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeC
Q psy12659 177 PFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTH 230 (1051)
Q Consensus 177 ~ln~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~ 230 (1051)
..|.....++... .....+|.||||||||+++..+...+... +.+++.+..
T Consensus 22 g~n~~~~~~l~~~-~g~~~~l~G~~G~GKTtL~~~i~~~~~~~--g~~~~~~~~ 72 (149)
T 2kjq_A 22 TENAELVYVLRHK-HGQFIYVWGEEGAGKSHLLQAWVAQALEA--GKNAAYIDA 72 (149)
T ss_dssp CCTHHHHHHCCCC-CCSEEEEESSSTTTTCHHHHHHHHHHHTT--TCCEEEEET
T ss_pred CccHHHHHHHHhc-CCCEEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEcH
Confidence 4677777776666 66788999999999999999888766643 555555543
No 171
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.77 E-value=0.0082 Score=61.14 Aligned_cols=40 Identities=25% Similarity=0.357 Sum_probs=29.9
Q ss_pred CHHHHHHHHHhcC----CCeEEEEccCCCChHHHHHHHHHHHHH
Q psy12659 179 TPTQIEAIRAGMQ----PGLTLVVGPPGTGKTDVAVQIISNLYH 218 (1051)
Q Consensus 179 n~~Q~~Ai~~~l~----~~~~lI~GPPGTGKT~ti~~ii~~l~~ 218 (1051)
.+...+.+...+. ++..+|.||||||||+++..+...+..
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 28 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4556666655543 357899999999999999988776653
No 172
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.74 E-value=0.018 Score=66.98 Aligned_cols=54 Identities=24% Similarity=0.285 Sum_probs=38.8
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEe-c--chHHHHHHHHHHHhcCC
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVT-H--SNQALNQLFEKIISLDV 885 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a-~--SN~Ald~l~e~l~~~~~ 885 (1051)
+.+.++.||||+|||||++.+...+-. .+.+|++++ . ...|.+++...-...++
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~--~G~kVllv~~D~~r~~a~eqL~~~~~~~gv 153 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKK--RGYKVGLVAADVYRPAAYDQLLQLGNQIGV 153 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHH--TTCCEEEEEECCSCHHHHHHHHHHHHTTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEecCccchhHHHHHHHHHHhcCC
Confidence 468899999999999999999988766 577887655 3 33555555544333344
No 173
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.74 E-value=0.012 Score=71.57 Aligned_cols=62 Identities=24% Similarity=0.360 Sum_probs=53.0
Q ss_pred CCCHHHHHHHHHhcC--CCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHH
Q psy12659 177 PFTPTQIEAIRAGMQ--PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKII 243 (1051)
Q Consensus 177 ~ln~~Q~~Ai~~~l~--~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~ 243 (1051)
.+|..|.+|+...+. .+..+|.|++|+|||+++--++..+. .+++|||||..|+..+++-..
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~-----~~~~vtAP~~~a~~~l~~~~~ 238 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA-----GRAIVTAPAKASTDVLAQFAG 238 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS-----SCEEEECSSCCSCHHHHHHHG
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH-----hCcEEECCCHHHHHHHHHHhh
Confidence 689999999998776 78899999999999988777777664 247999999999998887654
No 174
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.73 E-value=0.0055 Score=63.90 Aligned_cols=55 Identities=27% Similarity=0.276 Sum_probs=41.6
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHHhcCCC
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLDVD 886 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~~~~~~ 886 (1051)
+.+++|.||||+|||+++.+++.+...+ .++++++++-.. ..+.+.+++.+.+.+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~-~~~~v~~~s~E~-~~~~~~~~~~~~~~~ 84 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEE-YGEPGVFVTLEE-RARDLRREMASFGWD 84 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSS-CHHHHHHHHHTTTCC
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHh-cCCCceeecccC-CHHHHHHHHHHcCCC
Confidence 5789999999999999999998775542 367888887543 356677777666543
No 175
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.72 E-value=0.0091 Score=66.04 Aligned_cols=37 Identities=16% Similarity=0.173 Sum_probs=30.6
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHHH-HhCCCCcEEEEec
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNLY-HNFPHQRTLIVTH 868 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ll-~~~~~~riLV~a~ 868 (1051)
....++.||||||||+++..+...+. . .+.+++.+.-
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~--~g~~v~~~~~ 189 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEK--KGVSTTLLHF 189 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHH--SCCCEEEEEH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHh--cCCcEEEEEH
Confidence 36789999999999999999998888 6 5677776653
No 176
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.71 E-value=0.012 Score=68.58 Aligned_cols=54 Identities=22% Similarity=0.321 Sum_probs=40.6
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEe---CCHHHHHHHHHHHHhCCC
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVT---HSNQALNQLFEKIISLDV 247 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a---~SN~Avd~l~~rl~~~~~ 247 (1051)
+.+.+|.||||+|||||+..+...+... +.+|++++ +...|.+++...-...++
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~--G~kVllv~~D~~R~aa~eqL~~~~~~~gv 156 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKR--GYKVGVVCSDTWRPGAYHQLRQLLDRYHI 156 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEECCCSSTHHHHHHHHHHGGGTC
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCcchhHHHHHHHHHHhcCC
Confidence 5688999999999999999999887765 77777665 345666766655444544
No 177
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.71 E-value=0.014 Score=64.19 Aligned_cols=36 Identities=19% Similarity=0.232 Sum_probs=29.3
Q ss_pred CeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeC
Q psy12659 193 GLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTH 230 (1051)
Q Consensus 193 ~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~ 230 (1051)
+..+|.||||||||+++..+...+... +.+++.+..
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~--~~~~~~i~~ 73 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSA 73 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEEH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEH
Confidence 578999999999999999998887765 556666654
No 178
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.70 E-value=0.0084 Score=64.37 Aligned_cols=39 Identities=36% Similarity=0.493 Sum_probs=28.7
Q ss_pred CCCHHHHHHHHHhc----------------CCCeEEEEccCCCChHHHHHHHHHH
Q psy12659 177 PFTPTQIEAIRAGM----------------QPGLTLVVGPPGTGKTDVAVQIISN 215 (1051)
Q Consensus 177 ~ln~~Q~~Ai~~~l----------------~~~~~lI~GPPGTGKT~ti~~ii~~ 215 (1051)
.-.+.+++.+...+ .+.-.+|.||||||||+++..+...
T Consensus 20 ~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 20 GGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34567777776543 2456899999999999998877543
No 179
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.67 E-value=0.015 Score=67.62 Aligned_cols=54 Identities=24% Similarity=0.293 Sum_probs=39.1
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEe-C--CHHHHHHHHHHHHhCCC
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVT-H--SNQALNQLFEKIISLDV 247 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a-~--SN~Avd~l~~rl~~~~~ 247 (1051)
+.+.++.||||+||||++..+...+... +.+|++++ . ...|.+++...-...++
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~--G~kVllv~~D~~r~~a~eqL~~~~~~~gv 153 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKR--GYKVGLVAADVYRPAAYDQLLQLGNQIGV 153 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHT--TCCEEEEEECCSCHHHHHHHHHHHHTTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEecCccchhHHHHHHHHHHhcCC
Confidence 4678999999999999999999887765 67776654 3 34566665544444444
No 180
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.66 E-value=0.011 Score=66.16 Aligned_cols=62 Identities=23% Similarity=0.448 Sum_probs=44.8
Q ss_pred hcCCCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCcEE
Q psy12659 189 GMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLDVDERHLL 253 (1051)
Q Consensus 189 ~l~~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~~~~~~~~lv 253 (1051)
++.+++++|.||||||||+++.+++.+.....++.+++.+..-+.. +. .+..+.|++...++
T Consensus 25 Gl~~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~-~~--~ra~~lGvd~d~ll 86 (333)
T 3io5_A 25 GMQSGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGI-TP--AYLRSMGVDPERVI 86 (333)
T ss_dssp CBCSEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCC-CH--HHHHHTTCCGGGEE
T ss_pred CCcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchh-hH--HHHHHhCCCHHHeE
Confidence 4556789999999999999999999998876567788887654432 22 24555666544443
No 181
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.65 E-value=0.013 Score=65.35 Aligned_cols=28 Identities=32% Similarity=0.311 Sum_probs=24.2
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHHHHc
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNLYHN 219 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l~~~ 219 (1051)
++..+|.||||||||+++..+...+...
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~~~ 72 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEV 72 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 5679999999999999999988877654
No 182
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.64 E-value=0.018 Score=66.83 Aligned_cols=50 Identities=26% Similarity=0.364 Sum_probs=37.0
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHH
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKI 242 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl 242 (1051)
.+..+|.||||||||+++..+...+....|+.+++.+..+. ....+...+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~-~~~~~~~~~ 179 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK-FLNDLVDSM 179 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH-HHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH-HHHHHHHHH
Confidence 34789999999999999999988888877777877765443 234444333
No 183
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=95.62 E-value=0.018 Score=69.44 Aligned_cols=66 Identities=23% Similarity=0.318 Sum_probs=54.1
Q ss_pred CCCHHHHHHHHHhcCCCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhCCC
Q psy12659 177 PFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLDV 247 (1051)
Q Consensus 177 ~ln~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~~~~ 247 (1051)
.|++.|.+||..++...-.+|.+|+|+|||.... +-.+. . +.++||++|+..-+.+..+.+.+.|+
T Consensus 44 ~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~--lpal~-~--~g~~lVisP~~~L~~q~~~~l~~~gi 109 (591)
T 2v1x_A 44 KFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQ--LPALC-S--DGFTLVICPLISLMEDQLMVLKQLGI 109 (591)
T ss_dssp SCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHH--HHHHT-S--SSEEEEECSCHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHH--HHHHH-c--CCcEEEEeCHHHHHHHHHHHHHhcCC
Confidence 5778999999999987779999999999996432 22232 2 56999999999999999999988766
No 184
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.61 E-value=0.0096 Score=60.59 Aligned_cols=40 Identities=28% Similarity=0.378 Sum_probs=29.3
Q ss_pred CHHHHHHHHHhcC----CCeEEEECCCCCChhHHHHHHHHHHHH
Q psy12659 817 TFHEIEAIRAGMQ----PGLTLVVGPPGTGKTDVAVQIISNLYH 856 (1051)
Q Consensus 817 n~~Q~~Ai~~~l~----~~~tlIqGPPGTGKT~ti~~iI~~ll~ 856 (1051)
.....+.+...+. +...+|.||||||||+++..+...+..
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 28 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3445555555544 347999999999999999888876653
No 185
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.60 E-value=0.0091 Score=62.24 Aligned_cols=54 Identities=26% Similarity=0.315 Sum_probs=41.2
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhCCC
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLDV 247 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~~~~ 247 (1051)
..+++|.|+||+|||+++.+++.+...+. +.++++++-... .+++..++...+.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~-~~~v~~~s~E~~-~~~~~~~~~~~~~ 83 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY-GEPGVFVTLEER-ARDLRREMASFGW 83 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH-CCCEEEEESSSC-HHHHHHHHHTTTC
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhc-CCCceeecccCC-HHHHHHHHHHcCC
Confidence 56899999999999999999987755432 567888776543 4677888876654
No 186
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.60 E-value=0.011 Score=72.16 Aligned_cols=64 Identities=20% Similarity=0.264 Sum_probs=54.9
Q ss_pred CCCCHHHHHHHHHhcC--CCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHHh
Q psy12659 814 FKLTFHEIEAIRAGMQ--PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIIS 882 (1051)
Q Consensus 814 ~~Ln~~Q~~Ai~~~l~--~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~~ 882 (1051)
-.++..|.+|+...+. .+..+|.|++|+|||+++.-+++.+.. +++|||||..|+..+++-..+
T Consensus 174 ~~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~~-----~~~vtAP~~~a~~~l~~~~~~ 239 (671)
T 2zpa_A 174 GAPQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIAG-----RAIVTAPAKASTDVLAQFAGE 239 (671)
T ss_dssp SSCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSSS-----CEEEECSSCCSCHHHHHHHGG
T ss_pred CCCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHHh-----CcEEECCCHHHHHHHHHHhhC
Confidence 3689999999999888 788999999999999888888777642 479999999999999887643
No 187
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.60 E-value=0.01 Score=65.87 Aligned_cols=41 Identities=27% Similarity=0.425 Sum_probs=32.2
Q ss_pred CHHHHHHHHHhc-------CCCeEEEEccCCCChHHHHHHHHHHHHHc
Q psy12659 179 TPTQIEAIRAGM-------QPGLTLVVGPPGTGKTDVAVQIISNLYHN 219 (1051)
Q Consensus 179 n~~Q~~Ai~~~l-------~~~~~lI~GPPGTGKT~ti~~ii~~l~~~ 219 (1051)
.+.+.+.+...+ .++..+|.||||||||+++..+...+...
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~ 71 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEAR 71 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 456777776654 25679999999999999999998877543
No 188
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.60 E-value=0.0081 Score=58.57 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=19.4
Q ss_pred CCCeEEEECCCCCChhHHHHHHHH
Q psy12659 829 QPGLTLVVGPPGTGKTDVAVQIIS 852 (1051)
Q Consensus 829 ~~~~tlIqGPPGTGKT~ti~~iI~ 852 (1051)
.+.-.+|+||||||||+++..+-.
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHH
Confidence 356689999999999988876543
No 189
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.59 E-value=0.0098 Score=64.35 Aligned_cols=37 Identities=27% Similarity=0.421 Sum_probs=27.9
Q ss_pred CHHHHHHHHHhc---------------CCCeEEEEccCCCChHHHHHHHHHH
Q psy12659 179 TPTQIEAIRAGM---------------QPGLTLVVGPPGTGKTDVAVQIISN 215 (1051)
Q Consensus 179 n~~Q~~Ai~~~l---------------~~~~~lI~GPPGTGKT~ti~~ii~~ 215 (1051)
.+.+++++...+ .+...+|.||||||||+++..+...
T Consensus 26 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 26 QDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 556777766543 2467899999999999998877654
No 190
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=95.59 E-value=0.02 Score=76.90 Aligned_cols=69 Identities=20% Similarity=0.223 Sum_probs=58.1
Q ss_pred CCCCHHHHHHHHHhcC-CCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHh
Q psy12659 176 IPFTPTQIEAIRAGMQ-PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIIS 244 (1051)
Q Consensus 176 ~~ln~~Q~~Ai~~~l~-~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~ 244 (1051)
..||+-|.+|+...+. ..-.+|.+|.|+|||.++.-.|...+...++.++++++|+.+-+++....+.+
T Consensus 925 ~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~ 994 (1724)
T 4f92_B 925 PFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYE 994 (1724)
T ss_dssp SBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHH
Confidence 3589999999999875 55689999999999998876666666666788999999999999998887754
No 191
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=95.59 E-value=0.0053 Score=71.27 Aligned_cols=59 Identities=24% Similarity=0.259 Sum_probs=49.5
Q ss_pred HHHHhcC-CCeEEEECCCCCChhHH-HHHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHHhc
Q psy12659 823 AIRAGMQ-PGLTLVVGPPGTGKTDV-AVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISL 883 (1051)
Q Consensus 823 Ai~~~l~-~~~tlIqGPPGTGKT~t-i~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~~~ 883 (1051)
+|..++. .+.++|+||+|||||.. +..++..++. .+.++||++||...++++.+.+...
T Consensus 11 ~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~--~~~~~lvl~Ptr~La~Q~~~~l~g~ 71 (451)
T 2jlq_A 11 VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL--RRLRTLILAPTRVVAAEMEEALRGL 71 (451)
T ss_dssp CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHTTTS
T ss_pred HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh--cCCcEEEECCCHHHHHHHHHHhcCc
Confidence 5566676 67789999999999995 7788877777 6789999999999999999988543
No 192
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=95.59 E-value=0.019 Score=68.25 Aligned_cols=68 Identities=19% Similarity=0.307 Sum_probs=49.5
Q ss_pred CCCCCHHHHHHHHHh----cCCCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHHhcCC
Q psy12659 813 PFKLTFHEIEAIRAG----MQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLDV 885 (1051)
Q Consensus 813 ~~~Ln~~Q~~Ai~~~----l~~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~~~~~ 885 (1051)
.+.+-+.|.+++..+ ..+...+|+.|+|||||- +.++..+.. +.+|+|+++|+.-.+++.+.+...++
T Consensus 5 ~~~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~--~~l~~~~~~---~~~~~~~~~t~~l~~q~~~~~~~l~~ 76 (540)
T 2vl7_A 5 KLQLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTV--FVEVLGMQL---KKKVLIFTRTHSQLDSIYKNAKLLGL 76 (540)
T ss_dssp ----CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHH--HHHHHHHHH---TCEEEEEESCHHHHHHHHHHHGGGTC
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHH--HHHHHHHhC---CCcEEEEcCCHHHHHHHHHHHHhcCC
Confidence 345667899876543 347789999999999994 334444433 67999999999999999998877644
No 193
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=95.59 E-value=0.022 Score=67.70 Aligned_cols=73 Identities=19% Similarity=0.234 Sum_probs=51.6
Q ss_pred CCCCHHHHHHHHH---h-cCCCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCc
Q psy12659 176 IPFTPTQIEAIRA---G-MQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLDVDERH 251 (1051)
Q Consensus 176 ~~ln~~Q~~Ai~~---~-l~~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~~~~~~~~ 251 (1051)
+.+.+.|.+++.. + ......+|+.|+|||||. +.++-.+. . +.+++|++||+.-.+++.+.+...++ +
T Consensus 6 ~~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~--~~l~~~~~-~--~~~~~~~~~t~~l~~q~~~~~~~l~~---~ 77 (540)
T 2vl7_A 6 LQLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTV--FVEVLGMQ-L--KKKVLIFTRTHSQLDSIYKNAKLLGL---K 77 (540)
T ss_dssp ---CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHH--HHHHHHHH-H--TCEEEEEESCHHHHHHHHHHHGGGTC---C
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHH--HHHHHHHh-C--CCcEEEEcCCHHHHHHHHHHHHhcCC---c
Confidence 3566789997654 3 346789999999999995 33444433 3 57999999999999999998887644 3
Q ss_pred EEEec
Q psy12659 252 LLRLG 256 (1051)
Q Consensus 252 lvRlG 256 (1051)
++-++
T Consensus 78 ~~~l~ 82 (540)
T 2vl7_A 78 TGFLI 82 (540)
T ss_dssp EEEC-
T ss_pred EEEec
Confidence 44444
No 194
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.58 E-value=0.014 Score=72.53 Aligned_cols=64 Identities=14% Similarity=0.135 Sum_probs=49.5
Q ss_pred HHHHHHHHhcC-CCeEEEECCCCCChhHHHHHHHHHHHH-hCCCCcEEEEecchHHHHHHHHHHHh
Q psy12659 819 HEIEAIRAGMQ-PGLTLVVGPPGTGKTDVAVQIISNLYH-NFPHQRTLIVTHSNQALNQLFEKIIS 882 (1051)
Q Consensus 819 ~Q~~Ai~~~l~-~~~tlIqGPPGTGKT~ti~~iI~~ll~-~~~~~riLV~a~SN~Ald~l~e~l~~ 882 (1051)
.|+++|..++. +..++|+||+|+|||+.+..++..... ...+.+|++++|+..++.++.+++.+
T Consensus 97 ~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~ 162 (773)
T 2xau_A 97 AQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAE 162 (773)
T ss_dssp GGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHH
Confidence 48899988887 678999999999999966655432221 11256799999999999999888754
No 195
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.57 E-value=0.0086 Score=58.39 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=19.5
Q ss_pred CCCeEEEEccCCCChHHHHHHHHH
Q psy12659 191 QPGLTLVVGPPGTGKTDVAVQIIS 214 (1051)
Q Consensus 191 ~~~~~lI~GPPGTGKT~ti~~ii~ 214 (1051)
.....+|+||||||||+++..+-.
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHH
Confidence 455689999999999998876643
No 196
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=95.56 E-value=0.008 Score=73.60 Aligned_cols=61 Identities=25% Similarity=0.331 Sum_probs=48.5
Q ss_pred HHHHHhc------CCCeEEEEccCCCChHHH-HHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhCC
Q psy12659 184 EAIRAGM------QPGLTLVVGPPGTGKTDV-AVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLD 246 (1051)
Q Consensus 184 ~Ai~~~l------~~~~~lI~GPPGTGKT~t-i~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~~~ 246 (1051)
+||..++ ...-.+|+||+|||||.+ +..++..+... +.++||++||..-+.++.+.+...+
T Consensus 227 ~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~--~~~~lilaPTr~La~Q~~~~l~~~~ 294 (673)
T 2wv9_A 227 EPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK--RLRTAVLAPTRVVAAEMAEALRGLP 294 (673)
T ss_dssp ---CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTTTSC
T ss_pred cchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC--CCcEEEEccHHHHHHHHHHHHhcCC
Confidence 7887776 678899999999999998 46666666654 6799999999999999999987654
No 197
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=95.54 E-value=0.0083 Score=69.85 Aligned_cols=52 Identities=23% Similarity=0.312 Sum_probs=44.8
Q ss_pred cCCCeEEEEccCCCChHHH-HHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHH
Q psy12659 190 MQPGLTLVVGPPGTGKTDV-AVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKII 243 (1051)
Q Consensus 190 l~~~~~lI~GPPGTGKT~t-i~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~ 243 (1051)
.+....+|.||+|||||.. +..++..+... +.++||++||...++++.+++.
T Consensus 19 ~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~--~~~~lvl~Ptr~La~Q~~~~l~ 71 (459)
T 2z83_A 19 RKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ--RLRTAVLAPTRVVAAEMAEALR 71 (459)
T ss_dssp STTCEEEECCCTTSCTTTTHHHHHHHHHHHT--TCCEEEEECSHHHHHHHHHHTT
T ss_pred hcCCcEEEECCCCCCHHHHHHHHHHHHHHhC--CCcEEEECchHHHHHHHHHHhc
Confidence 3467899999999999998 66777777655 6799999999999999999986
No 198
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.54 E-value=0.011 Score=66.17 Aligned_cols=42 Identities=26% Similarity=0.564 Sum_probs=33.7
Q ss_pred hcCCCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEec
Q psy12659 827 GMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTH 868 (1051)
Q Consensus 827 ~l~~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~ 868 (1051)
++.+++++|.||||||||+++.+++.+.....++.+++.+..
T Consensus 25 Gl~~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~ 66 (333)
T 3io5_A 25 GMQSGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDS 66 (333)
T ss_dssp CBCSEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred CCcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 455568999999999999999999999887544666666654
No 199
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=95.53 E-value=0.029 Score=65.23 Aligned_cols=70 Identities=14% Similarity=0.065 Sum_probs=57.2
Q ss_pred CCCCHHHHHHHHHhc----CCCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHHhcC
Q psy12659 814 FKLTFHEIEAIRAGM----QPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLD 884 (1051)
Q Consensus 814 ~~Ln~~Q~~Ai~~~l----~~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~~~~ 884 (1051)
..|.+.|++||.... .+.-.++.-|.|+|||-++..++..+....+..++||++|+. .+.+..+.+.+..
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~-l~~qw~~e~~~~~ 109 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLS-VLKNWEEELSKFA 109 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECST-THHHHHHHHHHHC
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccHH-HHHHHHHHHHHHC
Confidence 368899999997663 345678889999999999999999988766678999999965 6788888887753
No 200
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.52 E-value=0.007 Score=66.27 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=20.9
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHH
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNL 216 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l 216 (1051)
+...++.||||||||+++..+...+
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4467899999999999988887665
No 201
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.52 E-value=0.025 Score=65.66 Aligned_cols=49 Identities=27% Similarity=0.392 Sum_probs=36.6
Q ss_pred CeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecchHHHHHHHHHH
Q psy12659 831 GLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKI 880 (1051)
Q Consensus 831 ~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l 880 (1051)
...+|.||||||||+++..+...+...+++.+++.+..+. ..+.+...+
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~-~~~~~~~~~ 179 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK-FLNDLVDSM 179 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH-HHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH-HHHHHHHHH
Confidence 5799999999999999998888887766778887776443 244444433
No 202
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.51 E-value=0.011 Score=63.60 Aligned_cols=24 Identities=46% Similarity=0.728 Sum_probs=20.2
Q ss_pred CCeEEEECCCCCChhHHHHHHHHH
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISN 853 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ 853 (1051)
+.-.+|.||||||||+++..+...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 567999999999999998877554
No 203
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.51 E-value=0.013 Score=61.67 Aligned_cols=24 Identities=42% Similarity=0.743 Sum_probs=20.0
Q ss_pred CCeEEEEccCCCChHHHHHHHHHH
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISN 215 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~ 215 (1051)
+...+|.||||||||+++..+...
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 445799999999999998887654
No 204
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.51 E-value=0.012 Score=65.07 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=29.5
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHHH-HcCCCCeEEEEe
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNLY-HNFPHQRTLIVT 229 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l~-~~~p~~riLv~a 229 (1051)
....+|.||||||||+++..+...+. .. +.+++.+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~--g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKK--GVSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHS--CCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhc--CCcEEEEE
Confidence 35789999999999999999988888 65 56676554
No 205
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=95.50 E-value=0.017 Score=68.43 Aligned_cols=66 Identities=26% Similarity=0.283 Sum_probs=54.2
Q ss_pred CCCHHHHHHHHHhcCCCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhCCC
Q psy12659 177 PFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLDV 247 (1051)
Q Consensus 177 ~ln~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~~~~ 247 (1051)
.|.+.|.+||..+++..-.+|.+|+|+|||... ++-.+.. +.++||++|+..-+.+..+++.+.|+
T Consensus 25 ~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~--~lp~l~~---~g~~lvi~P~~aL~~q~~~~l~~~gi 90 (523)
T 1oyw_A 25 QFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCY--QIPALLL---NGLTVVVSPLISLMKDQVDQLQANGV 90 (523)
T ss_dssp SCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHH--HHHHHHS---SSEEEEECSCHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHH--HHHHHHh---CCCEEEECChHHHHHHHHHHHHHcCC
Confidence 567889999999998778999999999999633 2333332 45899999999999999999998876
No 206
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.49 E-value=0.011 Score=62.61 Aligned_cols=38 Identities=18% Similarity=0.254 Sum_probs=33.6
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecc
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHS 869 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~S 869 (1051)
..+.+|.||||+|||+.+.+++..+.. .+.+|+++.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~--~g~kVli~~~~ 49 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEY--ADVKYLVFKPK 49 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH--TTCCEEEEEEC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHh--cCCEEEEEEec
Confidence 578999999999999999999999887 68899999653
No 207
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.49 E-value=0.017 Score=64.27 Aligned_cols=27 Identities=33% Similarity=0.349 Sum_probs=23.7
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHHHH
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNLYH 856 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ll~ 856 (1051)
+...+|.||||||||+++..+...+..
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~~ 71 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIEE 71 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 567999999999999999988887755
No 208
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.48 E-value=0.0061 Score=64.16 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=21.3
Q ss_pred CeEEEEccCCCChHHHHHHHHHHH
Q psy12659 193 GLTLVVGPPGTGKTDVAVQIISNL 216 (1051)
Q Consensus 193 ~~~lI~GPPGTGKT~ti~~ii~~l 216 (1051)
...+|.||||||||+++..++..+
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999887765
No 209
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.46 E-value=0.019 Score=63.42 Aligned_cols=42 Identities=33% Similarity=0.483 Sum_probs=32.8
Q ss_pred CHHHHHHHHHhcC-------CCeEEEEccCCCChHHHHHHHHHHHHHcC
Q psy12659 179 TPTQIEAIRAGMQ-------PGLTLVVGPPGTGKTDVAVQIISNLYHNF 220 (1051)
Q Consensus 179 n~~Q~~Ai~~~l~-------~~~~lI~GPPGTGKT~ti~~ii~~l~~~~ 220 (1051)
-+.+.+.+...+. +...+|.||||||||+++..+...+....
T Consensus 25 r~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~ 73 (386)
T 2qby_A 25 REDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKF 73 (386)
T ss_dssp CHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 3567777766543 56799999999999999999888776553
No 210
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=95.45 E-value=0.011 Score=68.76 Aligned_cols=54 Identities=24% Similarity=0.322 Sum_probs=46.2
Q ss_pred cCCCeEEEECCCCCChhHH-HHHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHHhc
Q psy12659 828 MQPGLTLVVGPPGTGKTDV-AVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISL 883 (1051)
Q Consensus 828 l~~~~tlIqGPPGTGKT~t-i~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~~~ 883 (1051)
..+..++|+||+|||||.. +..++..++. .+.++||++|+...++++.+.+...
T Consensus 19 ~~~~~vlv~a~TGsGKT~~~~l~il~~~~~--~~~~~lvl~Ptr~La~Q~~~~l~g~ 73 (459)
T 2z83_A 19 RKRQMTVLDLHPGSGKTRKILPQIIKDAIQ--QRLRTAVLAPTRVVAAEMAEALRGL 73 (459)
T ss_dssp STTCEEEECCCTTSCTTTTHHHHHHHHHHH--TTCCEEEEECSHHHHHHHHHHTTTS
T ss_pred hcCCcEEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEECchHHHHHHHHHHhcCc
Confidence 3378899999999999998 6777777776 6789999999999999999998643
No 211
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.44 E-value=0.013 Score=62.31 Aligned_cols=38 Identities=18% Similarity=0.249 Sum_probs=33.6
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCC
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHS 231 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~S 231 (1051)
..+.+|.||||+||||.+..++.++... +.+++++.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~--g~kVli~~~~ 49 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYA--DVKYLVFKPK 49 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT--TCCEEEEEEC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEEec
Confidence 5689999999999999999999998877 8899999664
No 212
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=95.41 E-value=0.011 Score=72.40 Aligned_cols=62 Identities=26% Similarity=0.337 Sum_probs=49.8
Q ss_pred HHHHHhc------CCCeEEEECCCCCChhHH-HHHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHHhcCC
Q psy12659 822 EAIRAGM------QPGLTLVVGPPGTGKTDV-AVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLDV 885 (1051)
Q Consensus 822 ~Ai~~~l------~~~~tlIqGPPGTGKT~t-i~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~~~~~ 885 (1051)
++|..++ .+.-.+|+||+|||||.. +..++..+.. .+.++||++||...+.++.+.+...++
T Consensus 227 ~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~--~~~~~lilaPTr~La~Q~~~~l~~~~i 295 (673)
T 2wv9_A 227 EPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ--KRLRTAVLAPTRVVAAEMAEALRGLPV 295 (673)
T ss_dssp ---CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHTTTSCC
T ss_pred cchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh--CCCcEEEEccHHHHHHHHHHHHhcCCe
Confidence 7777777 688999999999999998 4666666666 678999999999999999999876644
No 213
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.39 E-value=0.012 Score=63.63 Aligned_cols=25 Identities=36% Similarity=0.558 Sum_probs=20.9
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHH
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNL 854 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~l 854 (1051)
+...+|.||||||||+++..+...+
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4678999999999999988776543
No 214
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.38 E-value=0.0077 Score=65.97 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=21.0
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHH
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNL 854 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~l 854 (1051)
+...+++||||||||+++..+...+
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568899999999999988877765
No 215
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.35 E-value=0.023 Score=59.81 Aligned_cols=25 Identities=40% Similarity=0.698 Sum_probs=20.6
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHH
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNL 854 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~l 854 (1051)
+...+|.||||||||+++..+...+
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999999988776653
No 216
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.34 E-value=0.022 Score=63.03 Aligned_cols=40 Identities=30% Similarity=0.409 Sum_probs=31.3
Q ss_pred CHHHHHHHHHhc-------CCCeEEEECCCCCChhHHHHHHHHHHHH
Q psy12659 817 TFHEIEAIRAGM-------QPGLTLVVGPPGTGKTDVAVQIISNLYH 856 (1051)
Q Consensus 817 n~~Q~~Ai~~~l-------~~~~tlIqGPPGTGKT~ti~~iI~~ll~ 856 (1051)
...+.+.+...+ .+...+|.||||||||+++..+...+..
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 455666666654 2578999999999999999988887755
No 217
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.32 E-value=0.015 Score=64.24 Aligned_cols=39 Identities=28% Similarity=0.428 Sum_probs=28.7
Q ss_pred CCCHHHHHHHHHhc---------------CCCeEEEEccCCCChHHHHHHHHHH
Q psy12659 177 PFTPTQIEAIRAGM---------------QPGLTLVVGPPGTGKTDVAVQIISN 215 (1051)
Q Consensus 177 ~ln~~Q~~Ai~~~l---------------~~~~~lI~GPPGTGKT~ti~~ii~~ 215 (1051)
.-.+.+++++..++ .+.-.|+.||||||||+++..+...
T Consensus 21 ~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 21 AGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 33567777776654 1345899999999999998887654
No 218
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=95.31 E-value=0.015 Score=67.08 Aligned_cols=49 Identities=24% Similarity=0.403 Sum_probs=41.6
Q ss_pred CeEEEEccCCCChHHHH-HHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHH
Q psy12659 193 GLTLVVGPPGTGKTDVA-VQIISNLYHNFPHQRTLIVTHSNQALNQLFEKII 243 (1051)
Q Consensus 193 ~~~lI~GPPGTGKT~ti-~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~ 243 (1051)
...+|+||+|||||.+. ..++..++.. +.++|+++||..-++++.+.+.
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l~~~~~~--g~~~lvl~Pt~~La~Q~~~~~~ 52 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLVREAVKK--RLRTVILAPTRVVASEMYEALR 52 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHhC--CCCEEEECcHHHHHHHHHHHhC
Confidence 56899999999999986 6666666665 6799999999999999988875
No 219
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=95.29 E-value=0.014 Score=67.72 Aligned_cols=55 Identities=27% Similarity=0.318 Sum_probs=45.1
Q ss_pred cCCCeEEEEccCCCChHHHH-HHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhCC
Q psy12659 190 MQPGLTLVVGPPGTGKTDVA-VQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLD 246 (1051)
Q Consensus 190 l~~~~~lI~GPPGTGKT~ti-~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~~~ 246 (1051)
+...-.+|+||+|||||.+. ..++..+... +.++||++||...+.++.+.+...+
T Consensus 6 ~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~--~~~~lil~Ptr~La~Q~~~~l~~~~ 61 (440)
T 1yks_A 6 KKGMTTVLDFHPGAGKTRRFLPQILAECARR--RLRTLVLAPTRVVLSEMKEAFHGLD 61 (440)
T ss_dssp STTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTTTSC
T ss_pred hCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc--CCeEEEEcchHHHHHHHHHHHhcCC
Confidence 34667999999999999985 5566666655 6799999999999999999987553
No 220
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.28 E-value=0.024 Score=62.83 Aligned_cols=60 Identities=15% Similarity=0.286 Sum_probs=45.7
Q ss_pred HHHHHHhcC-CCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHHhc
Q psy12659 821 IEAIRAGMQ-PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISL 883 (1051)
Q Consensus 821 ~~Ai~~~l~-~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~~~ 883 (1051)
.+.+..++. +.+++|.||||+|||+++.++..++.. .+.+|++++-- ...+++..++...
T Consensus 58 LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~--~g~~vl~~slE-~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 58 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD--NDDVVNLHSLE-MGKKENIKRLIVT 118 (315)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT--TTCEEEEEESS-SCHHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEECC-CCHHHHHHHHHHH
Confidence 334445666 679999999999999999999988876 45889988854 4456677777643
No 221
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=95.27 E-value=0.031 Score=75.09 Aligned_cols=68 Identities=16% Similarity=0.148 Sum_probs=58.2
Q ss_pred CCCHHHHHHHHHhcC-CCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHHh
Q psy12659 815 KLTFHEIEAIRAGMQ-PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIIS 882 (1051)
Q Consensus 815 ~Ln~~Q~~Ai~~~l~-~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~~ 882 (1051)
.+|+-|.+|+...+. +.-.+|.+|.|+|||.++.-.|...+...++.++++++|+..-+++....+.+
T Consensus 926 ~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~ 994 (1724)
T 4f92_B 926 FFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYE 994 (1724)
T ss_dssp BCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHH
Confidence 489999999999987 56799999999999998876666666655778999999999999998887754
No 222
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.27 E-value=0.0078 Score=63.38 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=21.2
Q ss_pred CeEEEECCCCCChhHHHHHHHHHH
Q psy12659 831 GLTLVVGPPGTGKTDVAVQIISNL 854 (1051)
Q Consensus 831 ~~tlIqGPPGTGKT~ti~~iI~~l 854 (1051)
...+|.||||||||+++..++..+
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999998888765
No 223
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.26 E-value=0.016 Score=62.81 Aligned_cols=37 Identities=32% Similarity=0.271 Sum_probs=26.8
Q ss_pred CeEEEEccCCCChHHHHHHHHHHHHHcCC--CCeEEEEe
Q psy12659 193 GLTLVVGPPGTGKTDVAVQIISNLYHNFP--HQRTLIVT 229 (1051)
Q Consensus 193 ~~~lI~GPPGTGKT~ti~~ii~~l~~~~p--~~riLv~a 229 (1051)
...+|.||||||||+++..+...+..... ...++.+.
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~ 106 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVT 106 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEEC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEc
Confidence 35899999999999999988877765421 23455554
No 224
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=95.24 E-value=0.015 Score=67.55 Aligned_cols=57 Identities=23% Similarity=0.249 Sum_probs=47.1
Q ss_pred HHHHhcC-CCeEEEEccCCCChHHH-HHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHH
Q psy12659 185 AIRAGMQ-PGLTLVVGPPGTGKTDV-AVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKII 243 (1051)
Q Consensus 185 Ai~~~l~-~~~~lI~GPPGTGKT~t-i~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~ 243 (1051)
+|..++. .+..+|+||+|||||.. +..++..+... +.++||++||...++++.+.+.
T Consensus 11 ~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~--~~~~lvl~Ptr~La~Q~~~~l~ 69 (451)
T 2jlq_A 11 VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR--RLRTLILAPTRVVAAEMEEALR 69 (451)
T ss_dssp CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTT
T ss_pred HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc--CCcEEEECCCHHHHHHHHHHhc
Confidence 3445554 67889999999999994 77777777765 6799999999999999999885
No 225
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.22 E-value=0.0081 Score=63.99 Aligned_cols=25 Identities=48% Similarity=0.736 Sum_probs=20.6
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHH
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNL 854 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~l 854 (1051)
+.-.++.||||||||+++..+...+
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 3447899999999999998877654
No 226
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=95.20 E-value=0.017 Score=68.51 Aligned_cols=67 Identities=21% Similarity=0.198 Sum_probs=54.5
Q ss_pred CCCHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHHhcCCC
Q psy12659 815 KLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLDVD 886 (1051)
Q Consensus 815 ~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~~~~~~ 886 (1051)
.+.+.|.+||..++.+.-++|.+|+|+|||... .+..+.. +.++||++|+..-+.+..+.+.+.++.
T Consensus 25 ~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~--~lp~l~~---~g~~lvi~P~~aL~~q~~~~l~~~gi~ 91 (523)
T 1oyw_A 25 QFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCY--QIPALLL---NGLTVVVSPLISLMKDQVDQLQANGVA 91 (523)
T ss_dssp SCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHH--HHHHHHS---SSEEEEECSCHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHH--HHHHHHh---CCCEEEECChHHHHHHHHHHHHHcCCc
Confidence 445679999999999888999999999999543 2333433 468999999999999999999887764
No 227
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.19 E-value=0.013 Score=65.80 Aligned_cols=26 Identities=35% Similarity=0.512 Sum_probs=20.8
Q ss_pred CCCeEEEEccCCCChHHHHHHHHHHH
Q psy12659 191 QPGLTLVVGPPGTGKTDVAVQIISNL 216 (1051)
Q Consensus 191 ~~~~~lI~GPPGTGKT~ti~~ii~~l 216 (1051)
.+...++.||||||||+++..+...+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 35568999999999999887775544
No 228
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=95.19 E-value=0.02 Score=66.14 Aligned_cols=51 Identities=24% Similarity=0.374 Sum_probs=43.1
Q ss_pred CCeEEEECCCCCChhHHH-HHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHHh
Q psy12659 830 PGLTLVVGPPGTGKTDVA-VQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIIS 882 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti-~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~~ 882 (1051)
+..++|+||+|+|||.++ ..++..++. .+.+++|++||..-++++.+.+..
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~--~g~~~lvl~Pt~~La~Q~~~~~~~ 53 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVK--KRLRTVILAPTRVVASEMYEALRG 53 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHTTT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHh--CCCCEEEECcHHHHHHHHHHHhCC
Confidence 356899999999999986 666666666 678999999999999999988853
No 229
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=95.16 E-value=0.027 Score=67.87 Aligned_cols=67 Identities=19% Similarity=0.243 Sum_probs=54.3
Q ss_pred CCCHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHHhcCCC
Q psy12659 815 KLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLDVD 886 (1051)
Q Consensus 815 ~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~~~~~~ 886 (1051)
.+.+.|.+||..++.+.-++|.+|.|+|||.... +..+. .+.++||++|+..-+.+..+.+.+.|+.
T Consensus 44 ~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~--lpal~---~~g~~lVisP~~~L~~q~~~~l~~~gi~ 110 (591)
T 2v1x_A 44 KFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQ--LPALC---SDGFTLVICPLISLMEDQLMVLKQLGIS 110 (591)
T ss_dssp SCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHH--HHHHT---SSSEEEEECSCHHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHH--HHHHH---cCCcEEEEeCHHHHHHHHHHHHHhcCCc
Confidence 4566799999999998889999999999996432 22233 3569999999999999999999887654
No 230
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.16 E-value=0.018 Score=61.31 Aligned_cols=39 Identities=18% Similarity=0.156 Sum_probs=26.0
Q ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecc
Q psy12659 829 QPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHS 869 (1051)
Q Consensus 829 ~~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~S 869 (1051)
.+...+|.||||||||+++..+...+-. .+.+++.+.-+
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~~--~~~~~~~v~~~ 66 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSSR--WQGPFISLNCA 66 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTSTT--TTSCEEEEEGG
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcCc--cCCCeEEEecC
Confidence 3677999999999999888766544322 23455555433
No 231
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.15 E-value=0.015 Score=62.72 Aligned_cols=26 Identities=35% Similarity=0.647 Sum_probs=21.5
Q ss_pred CCCeEEEEccCCCChHHHHHHHHHHH
Q psy12659 191 QPGLTLVVGPPGTGKTDVAVQIISNL 216 (1051)
Q Consensus 191 ~~~~~lI~GPPGTGKT~ti~~ii~~l 216 (1051)
.+...+|.||||||||+++..+...+
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 35668999999999999998876654
No 232
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=95.14 E-value=0.02 Score=66.36 Aligned_cols=56 Identities=29% Similarity=0.325 Sum_probs=46.1
Q ss_pred cCCCeEEEECCCCCChhHHH-HHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHHhcCC
Q psy12659 828 MQPGLTLVVGPPGTGKTDVA-VQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLDV 885 (1051)
Q Consensus 828 l~~~~tlIqGPPGTGKT~ti-~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~~~~~ 885 (1051)
+.+.-.+|+||+|||||.+. ..++..+.. .+.++||++||...+.++.+.+...++
T Consensus 6 ~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~--~~~~~lil~Ptr~La~Q~~~~l~~~~v 62 (440)
T 1yks_A 6 KKGMTTVLDFHPGAGKTRRFLPQILAECAR--RRLRTLVLAPTRVVLSEMKEAFHGLDV 62 (440)
T ss_dssp STTCEEEECCCTTSSTTTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHTTTSCE
T ss_pred hCCCCEEEEcCCCCCHHHHHHHHHHHHHHh--cCCeEEEEcchHHHHHHHHHHHhcCCe
Confidence 44678999999999999985 556666666 567999999999999999999976543
No 233
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.10 E-value=0.011 Score=61.69 Aligned_cols=24 Identities=38% Similarity=0.645 Sum_probs=20.5
Q ss_pred CeEEEECCCCCChhHHHHHHHHHH
Q psy12659 831 GLTLVVGPPGTGKTDVAVQIISNL 854 (1051)
Q Consensus 831 ~~tlIqGPPGTGKT~ti~~iI~~l 854 (1051)
-+++|.||||||||+.++..+..+
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH
Confidence 478999999999999998876554
No 234
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.09 E-value=0.028 Score=62.16 Aligned_cols=51 Identities=25% Similarity=0.391 Sum_probs=35.5
Q ss_pred CHHHHHHHHHhcC-------CCeEEEECCCCCChhHHHHHHHHHHHHhCC-CCcEEEEe
Q psy12659 817 TFHEIEAIRAGMQ-------PGLTLVVGPPGTGKTDVAVQIISNLYHNFP-HQRTLIVT 867 (1051)
Q Consensus 817 n~~Q~~Ai~~~l~-------~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~-~~riLV~a 867 (1051)
-..+.+.+...+. +...+|.||||||||+++..+...+-.... +..++.+.
T Consensus 25 r~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 25 REDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred hHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 3456666665554 568999999999999999988887665332 44444443
No 235
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.09 E-value=0.023 Score=62.94 Aligned_cols=59 Identities=17% Similarity=0.318 Sum_probs=45.2
Q ss_pred HHHHHHhcC-CCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHh
Q psy12659 183 IEAIRAGMQ-PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIIS 244 (1051)
Q Consensus 183 ~~Ai~~~l~-~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~ 244 (1051)
.+.+..++. ..+++|.|+||+|||+++.+++.++..+ +.++++++--. ..+++..|+..
T Consensus 58 LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~--g~~vl~~slE~-s~~~l~~R~~~ 117 (315)
T 3bh0_A 58 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEM-GKKENIKRLIV 117 (315)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTT--TCEEEEEESSS-CHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEECCC-CHHHHHHHHHH
Confidence 334445565 5589999999999999999999888765 57899988653 34677777764
No 236
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.09 E-value=0.019 Score=63.51 Aligned_cols=23 Identities=39% Similarity=0.674 Sum_probs=19.6
Q ss_pred CeEEEECCCCCChhHHHHHHHHH
Q psy12659 831 GLTLVVGPPGTGKTDVAVQIISN 853 (1051)
Q Consensus 831 ~~tlIqGPPGTGKT~ti~~iI~~ 853 (1051)
.-.++.||||||||+++..+...
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999998877654
No 237
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.06 E-value=0.023 Score=62.35 Aligned_cols=62 Identities=21% Similarity=0.305 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHHHhcC----CCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHH
Q psy12659 176 IPFTPTQIEAIRAGMQ----PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKI 242 (1051)
Q Consensus 176 ~~ln~~Q~~Ai~~~l~----~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl 242 (1051)
+--++...+.+...+. +.+.++.||||||||+++..+...+ +..++-+..++.-.+.+.+.+
T Consensus 28 ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l-----~~~~~~i~~~~~~~~~i~~~~ 93 (324)
T 3u61_B 28 CILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV-----NADMMFVNGSDCKIDFVRGPL 93 (324)
T ss_dssp SCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT-----TEEEEEEETTTCCHHHHHTHH
T ss_pred HhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh-----CCCEEEEcccccCHHHHHHHH
Confidence 3445666777766543 5678889999999999998886554 345666665544344444433
No 238
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.05 E-value=0.017 Score=62.52 Aligned_cols=35 Identities=29% Similarity=0.612 Sum_probs=25.9
Q ss_pred CeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEe
Q psy12659 831 GLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVT 867 (1051)
Q Consensus 831 ~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a 867 (1051)
+..++.||||||||+++..+...+.. .+..++.+.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~--~~~~~~~~~ 82 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFD--TEEAMIRID 82 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHS--CGGGEEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcC--CCcceEEee
Confidence 46899999999999998877776654 344455544
No 239
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.03 E-value=0.008 Score=58.54 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=18.0
Q ss_pred CCCeEEEECCCCCChhHHHHHH
Q psy12659 829 QPGLTLVVGPPGTGKTDVAVQI 850 (1051)
Q Consensus 829 ~~~~tlIqGPPGTGKT~ti~~i 850 (1051)
.+.-.+|.||||||||+++..+
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i 47 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYF 47 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGG
T ss_pred CCCcEEEECCCCccHHHHHHHH
Confidence 3566899999999999877654
No 240
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.03 E-value=0.02 Score=61.98 Aligned_cols=38 Identities=32% Similarity=0.269 Sum_probs=27.2
Q ss_pred CeEEEECCCCCChhHHHHHHHHHHHHhCC--CCcEEEEec
Q psy12659 831 GLTLVVGPPGTGKTDVAVQIISNLYHNFP--HQRTLIVTH 868 (1051)
Q Consensus 831 ~~tlIqGPPGTGKT~ti~~iI~~ll~~~~--~~riLV~a~ 868 (1051)
...+|.||||||||+++..+...+..... ...++.+..
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR 107 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence 45899999999999999888777655221 235555543
No 241
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.02 E-value=0.033 Score=61.81 Aligned_cols=54 Identities=22% Similarity=0.239 Sum_probs=38.4
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEec---chHHHHHHHHHHHhcCC
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTH---SNQALNQLFEKIISLDV 885 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~---SN~Ald~l~e~l~~~~~ 885 (1051)
+.+.+|.||||+||||++..+...+-. .+.+|++++. ...|.+++...+...++
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~--~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl 160 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVD--EGKSVVLAAADTFRAAAIEQLKIWGERVGA 160 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECTTCHHHHHHHHHHHHHHTC
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHh--cCCEEEEEccccccHHHHHHHHHHHHHcCC
Confidence 468899999999999999999887655 4677777653 33455665544444454
No 242
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.01 E-value=0.011 Score=61.56 Aligned_cols=23 Identities=39% Similarity=0.684 Sum_probs=19.9
Q ss_pred eEEEEccCCCChHHHHHHHHHHH
Q psy12659 194 LTLVVGPPGTGKTDVAVQIISNL 216 (1051)
Q Consensus 194 ~~lI~GPPGTGKT~ti~~ii~~l 216 (1051)
+++|.||||||||+.++.++...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 78999999999999988876554
No 243
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.98 E-value=0.018 Score=62.16 Aligned_cols=26 Identities=35% Similarity=0.647 Sum_probs=21.5
Q ss_pred CCCeEEEECCCCCChhHHHHHHHHHH
Q psy12659 829 QPGLTLVVGPPGTGKTDVAVQIISNL 854 (1051)
Q Consensus 829 ~~~~tlIqGPPGTGKT~ti~~iI~~l 854 (1051)
.+...++.||||||||+++..+...+
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999988776654
No 244
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.97 E-value=0.022 Score=61.78 Aligned_cols=64 Identities=22% Similarity=0.372 Sum_probs=39.5
Q ss_pred CHHHHHHHHHhcC---CCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEe-CCHHHHHHHHHHH
Q psy12659 179 TPTQIEAIRAGMQ---PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVT-HSNQALNQLFEKI 242 (1051)
Q Consensus 179 n~~Q~~Ai~~~l~---~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a-~SN~Avd~l~~rl 242 (1051)
.+...+.+...+. .+..+|.||||||||+++..+...+........++.+. .....++.+.+.+
T Consensus 30 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (327)
T 1iqp_A 30 QEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKV 97 (327)
T ss_dssp CHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHH
T ss_pred CHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHHHHH
Confidence 4566666665543 23589999999999999999988775431112344444 3444445444433
No 245
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.97 E-value=0.017 Score=64.81 Aligned_cols=26 Identities=35% Similarity=0.512 Sum_probs=20.7
Q ss_pred CCCeEEEECCCCCChhHHHHHHHHHH
Q psy12659 829 QPGLTLVVGPPGTGKTDVAVQIISNL 854 (1051)
Q Consensus 829 ~~~~tlIqGPPGTGKT~ti~~iI~~l 854 (1051)
.+.-.++.||||||||+++..+...+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 35668999999999999887765543
No 246
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=94.97 E-value=0.011 Score=71.72 Aligned_cols=59 Identities=24% Similarity=0.247 Sum_probs=50.6
Q ss_pred HHHHhcCCCeEEEECCCCCChhHH-HHHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHHhc
Q psy12659 823 AIRAGMQPGLTLVVGPPGTGKTDV-AVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISL 883 (1051)
Q Consensus 823 Ai~~~l~~~~tlIqGPPGTGKT~t-i~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~~~ 883 (1051)
++..++.+.-.++++|+|||||.. +..++..++. .+.++||++||...++++.+.+...
T Consensus 179 ~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~--~~~~vLvl~PtreLa~Qi~~~l~~~ 238 (618)
T 2whx_A 179 DEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK--RRLRTLILAPTRVVAAEMEEALRGL 238 (618)
T ss_dssp CGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHTTTS
T ss_pred CHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEcChHHHHHHHHHHhcCC
Confidence 466677789999999999999998 5778888777 6789999999999999999988643
No 247
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.96 E-value=0.014 Score=63.28 Aligned_cols=26 Identities=38% Similarity=0.765 Sum_probs=21.8
Q ss_pred CeEEEEccCCCChHHHHHHHHHHHHH
Q psy12659 193 GLTLVVGPPGTGKTDVAVQIISNLYH 218 (1051)
Q Consensus 193 ~~~lI~GPPGTGKT~ti~~ii~~l~~ 218 (1051)
+..+|.||||||||+++..+...+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 46899999999999999888776653
No 248
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=94.95 E-value=0.0091 Score=72.37 Aligned_cols=58 Identities=22% Similarity=0.236 Sum_probs=49.3
Q ss_pred HHHHhcCCCeEEEEccCCCChHHH-HHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHh
Q psy12659 185 AIRAGMQPGLTLVVGPPGTGKTDV-AVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIIS 244 (1051)
Q Consensus 185 Ai~~~l~~~~~lI~GPPGTGKT~t-i~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~ 244 (1051)
++...+...-.++++|+|||||.. +..++..+... +.++||++||...++++.+.+..
T Consensus 179 ~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~--~~~vLvl~PtreLa~Qi~~~l~~ 237 (618)
T 2whx_A 179 DEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR--RLRTLILAPTRVVAAEMEEALRG 237 (618)
T ss_dssp CGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTTT
T ss_pred CHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEcChHHHHHHHHHHhcC
Confidence 466667788899999999999998 57788777764 67999999999999999988863
No 249
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.93 E-value=0.018 Score=64.14 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.2
Q ss_pred eEEEEccCCCChHHHHHHHHHHHH
Q psy12659 194 LTLVVGPPGTGKTDVAVQIISNLY 217 (1051)
Q Consensus 194 ~~lI~GPPGTGKT~ti~~ii~~l~ 217 (1051)
..+|.||||||||+++..+...+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 799999999999999988876654
No 250
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.92 E-value=0.012 Score=57.28 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=18.1
Q ss_pred CCCeEEEEccCCCChHHHHHHH
Q psy12659 191 QPGLTLVVGPPGTGKTDVAVQI 212 (1051)
Q Consensus 191 ~~~~~lI~GPPGTGKT~ti~~i 212 (1051)
.....+|.||||||||+++..+
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i 47 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYF 47 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGG
T ss_pred CCCcEEEECCCCccHHHHHHHH
Confidence 4556899999999999987665
No 251
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=94.90 E-value=0.046 Score=66.29 Aligned_cols=65 Identities=23% Similarity=0.290 Sum_probs=48.7
Q ss_pred CHHHHHHHHH---hc-CCCeEEEEccCCCChHHHH-HHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhC
Q psy12659 179 TPTQIEAIRA---GM-QPGLTLVVGPPGTGKTDVA-VQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISL 245 (1051)
Q Consensus 179 n~~Q~~Ai~~---~l-~~~~~lI~GPPGTGKT~ti-~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~~ 245 (1051)
-+.|.+.+.. ++ +..-.+++.|+|||||-.. .-++..+... +.+|+++++|+.-..++.+.+...
T Consensus 5 R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~--~~kvli~t~T~~l~~Qi~~el~~l 74 (620)
T 4a15_A 5 RQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER--KLKVLYLVRTNSQEEQVIKELRSL 74 (620)
T ss_dssp CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc--CCeEEEECCCHHHHHHHHHHHHHH
Confidence 4678887764 33 4778999999999999654 4445555444 679999999999888888776543
No 252
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.88 E-value=0.022 Score=60.65 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=29.1
Q ss_pred EEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEec
Q psy12659 833 TLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTH 868 (1051)
Q Consensus 833 tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~ 868 (1051)
.++.||||+||||++.++...+.. .|.+|+++.-
T Consensus 9 I~~~~kgGvGKTt~a~~la~~l~~--~G~~V~v~d~ 42 (228)
T 2r8r_A 9 VFLGAAPGVGKTYAMLQAAHAQLR--QGVRVMAGVV 42 (228)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHH--TTCCEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH--CCCCEEEEEe
Confidence 678999999999999999999988 6778865543
No 253
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.88 E-value=0.026 Score=62.74 Aligned_cols=35 Identities=23% Similarity=0.312 Sum_probs=25.3
Q ss_pred eEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEe
Q psy12659 832 LTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVT 867 (1051)
Q Consensus 832 ~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a 867 (1051)
..+|.||||||||+++..+...+.... +..++.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEe
Confidence 799999999999999988777654311 34454443
No 254
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.86 E-value=0.029 Score=60.05 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=20.5
Q ss_pred CCeEEEEccCCCChHHHHHHHHHH
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISN 215 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~ 215 (1051)
+...+|.||||||||+++..+...
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 456899999999999999888665
No 255
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.82 E-value=0.015 Score=67.62 Aligned_cols=49 Identities=27% Similarity=0.351 Sum_probs=33.6
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEec----------chHHHHHHHHHHHhc
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTH----------SNQALNQLFEKIISL 883 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~----------SN~Ald~l~e~l~~~ 883 (1051)
+.-.|+.||||||||.++.++...+ +..++.+.. |...+..+++.....
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~-----~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~ 273 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQT-----NATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEK 273 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH-----TCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHh-----CCCEEEEehhhhhhcccchHHHHHHHHHHHHHhc
Confidence 4568999999999999988776653 334555544 345666666655443
No 256
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.79 E-value=0.015 Score=67.53 Aligned_cols=50 Identities=30% Similarity=0.395 Sum_probs=34.0
Q ss_pred CCCCHHHHHHHHHhc---------------C-CCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeC
Q psy12659 176 IPFTPTQIEAIRAGM---------------Q-PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTH 230 (1051)
Q Consensus 176 ~~ln~~Q~~Ai~~~l---------------~-~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~ 230 (1051)
+.--+.|++.+..++ . +.-.|+.||||||||.++.++...+ +..++.++.
T Consensus 183 igGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~-----~~~f~~v~~ 248 (434)
T 4b4t_M 183 VGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT-----NATFLKLAA 248 (434)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH-----TCEEEEEEG
T ss_pred cCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh-----CCCEEEEeh
Confidence 444568888776431 1 4558999999999999988776543 334555554
No 257
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.78 E-value=0.016 Score=67.34 Aligned_cols=25 Identities=40% Similarity=0.666 Sum_probs=20.5
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHH
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNL 216 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l 216 (1051)
+.-.|+.||||||||.++.++...+
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3448999999999999998876543
No 258
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.77 E-value=0.016 Score=67.33 Aligned_cols=49 Identities=24% Similarity=0.374 Sum_probs=34.2
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEec----------chHHHHHHHHHHHhc
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTH----------SNQALNQLFEKIISL 883 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~----------SN~Ald~l~e~l~~~ 883 (1051)
+.-.|+.||||||||.++.++...+ +..++.+.. |...+..++......
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~-----~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~ 264 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANST-----KAAFIRVNGSEFVHKYLGEGPRMVRDVFRLAREN 264 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHH-----TCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh-----CCCeEEEecchhhccccchhHHHHHHHHHHHHHc
Confidence 4558999999999999998877654 334555543 345677777766543
No 259
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.77 E-value=0.023 Score=60.50 Aligned_cols=26 Identities=27% Similarity=0.311 Sum_probs=20.9
Q ss_pred CCCeEEEEccCCCChHHHHHHHHHHH
Q psy12659 191 QPGLTLVVGPPGTGKTDVAVQIISNL 216 (1051)
Q Consensus 191 ~~~~~lI~GPPGTGKT~ti~~ii~~l 216 (1051)
.+...+|.||||||||+++..+...+
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 46678999999999999887775443
No 260
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.74 E-value=0.023 Score=60.20 Aligned_cols=24 Identities=54% Similarity=0.793 Sum_probs=19.9
Q ss_pred CCeEEEECCCCCChhHHHHHHHHH
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISN 853 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ 853 (1051)
+.-.+|.||||||||+++..+...
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 445899999999999988877654
No 261
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.74 E-value=0.021 Score=63.37 Aligned_cols=48 Identities=25% Similarity=0.432 Sum_probs=32.4
Q ss_pred CeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeC----------CHHHHHHHHHHHHh
Q psy12659 193 GLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTH----------SNQALNQLFEKIIS 244 (1051)
Q Consensus 193 ~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~----------SN~Avd~l~~rl~~ 244 (1051)
.-.||.||||||||+++..+...+ .+..++.+.. +...+..+++....
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~----~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~ 103 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA----NNSTFFSISSSDLVSKWLGESEKLVKNLFQLARE 103 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT----TSCEEEEEECCSSCCSSCCSCHHHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHHc----CCCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHHh
Confidence 568999999999999998887654 1334443332 45566666666554
No 262
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.73 E-value=0.011 Score=62.85 Aligned_cols=24 Identities=46% Similarity=0.661 Sum_probs=19.8
Q ss_pred CeEEEEccCCCChHHHHHHHHHHH
Q psy12659 193 GLTLVVGPPGTGKTDVAVQIISNL 216 (1051)
Q Consensus 193 ~~~lI~GPPGTGKT~ti~~ii~~l 216 (1051)
.-.+|.||||||||+++..+...+
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh
Confidence 347899999999999998886643
No 263
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.72 E-value=0.035 Score=60.86 Aligned_cols=58 Identities=24% Similarity=0.353 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHhcC----CCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecchHHHHHHHH
Q psy12659 816 LTFHEIEAIRAGMQ----PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFE 878 (1051)
Q Consensus 816 Ln~~Q~~Ai~~~l~----~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e 878 (1051)
-+....+.+...+. +.+.++.||||||||+++..+...+ +..++-+..++.-.+.+.+
T Consensus 30 g~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l-----~~~~~~i~~~~~~~~~i~~ 91 (324)
T 3u61_B 30 LPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV-----NADMMFVNGSDCKIDFVRG 91 (324)
T ss_dssp CCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT-----TEEEEEEETTTCCHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh-----CCCEEEEcccccCHHHHHH
Confidence 44556666666554 4678899999999999998876554 2345544444333444333
No 264
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=94.72 E-value=0.026 Score=72.26 Aligned_cols=69 Identities=13% Similarity=0.087 Sum_probs=54.8
Q ss_pred CCCHHHHHHHHHhcC--------------CCeEEEECCCCCChhHHHHHHHHHHHHhC-CCCcEEEEecchHHHHHHHHH
Q psy12659 815 KLTFHEIEAIRAGMQ--------------PGLTLVVGPPGTGKTDVAVQIISNLYHNF-PHQRTLIVTHSNQALNQLFEK 879 (1051)
Q Consensus 815 ~Ln~~Q~~Ai~~~l~--------------~~~tlIqGPPGTGKT~ti~~iI~~ll~~~-~~~riLV~a~SN~Ald~l~e~ 879 (1051)
.+.+.|.+||..++. +.-.+|+.|.|||||.++..++. ++... ...+|||++|++.-++++.+.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~-ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAAR-LATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHH-HHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHH-HHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 467789999998765 24579999999999999987774 44422 246999999999999999888
Q ss_pred HHhcC
Q psy12659 880 IISLD 884 (1051)
Q Consensus 880 l~~~~ 884 (1051)
+...+
T Consensus 350 f~~f~ 354 (1038)
T 2w00_A 350 YQRFS 354 (1038)
T ss_dssp HHTTS
T ss_pred HHHhc
Confidence 77654
No 265
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.72 E-value=0.022 Score=63.38 Aligned_cols=25 Identities=40% Similarity=0.638 Sum_probs=21.6
Q ss_pred CeEEEEccCCCChHHHHHHHHHHHH
Q psy12659 193 GLTLVVGPPGTGKTDVAVQIISNLY 217 (1051)
Q Consensus 193 ~~~lI~GPPGTGKT~ti~~ii~~l~ 217 (1051)
...+|.||||||||+++..+...+-
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4789999999999999988877653
No 266
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=94.67 E-value=0.03 Score=72.52 Aligned_cols=52 Identities=17% Similarity=0.352 Sum_probs=40.9
Q ss_pred CeEEEEccCCCChHHHHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHHHHHhC
Q psy12659 193 GLTLVVGPPGTGKTDVAVQIISNLYHNFPH-QRTLIVTHSNQALNQLFEKIISL 245 (1051)
Q Consensus 193 ~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~-~riLv~a~SN~Avd~l~~rl~~~ 245 (1051)
++.+|.|+||||||+++..-|..++.+.+. .+||+++|++..-. +.+++...
T Consensus 2 ~l~lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~TFt-~~~rl~~~ 54 (1166)
T 3u4q_B 2 GAEFLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQMTFL-MEYELAKT 54 (1166)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGGHHH-HHHHHTCC
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcccHH-HHHHHHHh
Confidence 367999999999999999999999877653 79999977554333 66677653
No 267
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=94.67 E-value=0.032 Score=72.35 Aligned_cols=52 Identities=17% Similarity=0.344 Sum_probs=40.9
Q ss_pred CeEEEECCCCCChhHHHHHHHHHHHHhCC-CCcEEEEecchHHHHHHHHHHHhc
Q psy12659 831 GLTLVVGPPGTGKTDVAVQIISNLYHNFP-HQRTLIVTHSNQALNQLFEKIISL 883 (1051)
Q Consensus 831 ~~tlIqGPPGTGKT~ti~~iI~~ll~~~~-~~riLV~a~SN~Ald~l~e~l~~~ 883 (1051)
++.+|.|+||||||+++++.|.+++.+.+ +.+||+++|++..-. +.+++...
T Consensus 2 ~l~lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~TFt-~~~rl~~~ 54 (1166)
T 3u4q_B 2 GAEFLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQMTFL-MEYELAKT 54 (1166)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGGHHH-HHHHHTCC
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcccHH-HHHHHHHh
Confidence 47899999999999999999999998655 489999977554443 55666543
No 268
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.66 E-value=0.027 Score=63.54 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=31.7
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEec
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTH 868 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~ 868 (1051)
..+++|.||||+|||+++.+++.++.. ++.+++.++.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~--~g~~vlyi~~ 97 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQA--AGGIAAFIDA 97 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEES
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEEC
Confidence 578999999999999999999998887 5667776664
No 269
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=94.63 E-value=0.025 Score=72.35 Aligned_cols=70 Identities=16% Similarity=0.168 Sum_probs=55.4
Q ss_pred CCCCHHHHHHHHHhcC--------------CCeEEEEccCCCChHHHHHHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHH
Q psy12659 176 IPFTPTQIEAIRAGMQ--------------PGLTLVVGPPGTGKTDVAVQIISNLYHNFP-HQRTLIVTHSNQALNQLFE 240 (1051)
Q Consensus 176 ~~ln~~Q~~Ai~~~l~--------------~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p-~~riLv~a~SN~Avd~l~~ 240 (1051)
+.+.+-|.+||..++. ..-.+|+.|.|||||.++..++. ++...+ ..++||++|++.-++++.+
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~-ll~~~~~~~rvLvlvpr~eL~~Q~~~ 348 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAAR-LATELDFIDKVFFVVDRKDLDYQTMK 348 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHH-HHTTCTTCCEEEEEECGGGCCHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHH-HHHhcCCCceEEEEeCcHHHHHHHHH
Confidence 4588999999988654 23579999999999999977764 444322 3699999999998899988
Q ss_pred HHHhCC
Q psy12659 241 KIISLD 246 (1051)
Q Consensus 241 rl~~~~ 246 (1051)
.+...+
T Consensus 349 ~f~~f~ 354 (1038)
T 2w00_A 349 EYQRFS 354 (1038)
T ss_dssp HHHTTS
T ss_pred HHHHhc
Confidence 887653
No 270
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.58 E-value=0.031 Score=57.80 Aligned_cols=37 Identities=19% Similarity=0.298 Sum_probs=33.7
Q ss_pred CeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCC
Q psy12659 193 GLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHS 231 (1051)
Q Consensus 193 ~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~S 231 (1051)
.+.++.||+|+||||.+..++.++... +.+|+++.|+
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~--g~kV~v~k~~ 45 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIA--KQKIQVFKPE 45 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEec
Confidence 488999999999999999999998876 8899999876
No 271
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.58 E-value=0.029 Score=59.81 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=28.7
Q ss_pred EEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEe
Q psy12659 195 TLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVT 229 (1051)
Q Consensus 195 ~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a 229 (1051)
.++.||||+||||++.++...+... |.+|+++.
T Consensus 9 I~~~~kgGvGKTt~a~~la~~l~~~--G~~V~v~d 41 (228)
T 2r8r_A 9 VFLGAAPGVGKTYAMLQAAHAQLRQ--GVRVMAGV 41 (228)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHT--TCCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHC--CCCEEEEE
Confidence 6789999999999999999999877 77887654
No 272
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.57 E-value=0.031 Score=63.22 Aligned_cols=37 Identities=19% Similarity=0.369 Sum_probs=32.0
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEec
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTH 868 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~ 868 (1051)
..+++|.||||+|||+++.+++.++.. .+.+++.++-
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~--~g~~vlyid~ 99 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDA 99 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEES
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeC
Confidence 578999999999999999999998887 5667777765
No 273
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.56 E-value=0.026 Score=62.59 Aligned_cols=38 Identities=37% Similarity=0.588 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcC-CCe--EEEECCCCCChhHHHHHHHHHHH
Q psy12659 818 FHEIEAIRAGMQ-PGL--TLVVGPPGTGKTDVAVQIISNLY 855 (1051)
Q Consensus 818 ~~Q~~Ai~~~l~-~~~--tlIqGPPGTGKT~ti~~iI~~ll 855 (1051)
....+.+...+. +.+ .++.||||||||+++..+...+.
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 334444555444 333 89999999999999988877764
No 274
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=94.55 E-value=0.032 Score=60.24 Aligned_cols=41 Identities=29% Similarity=0.477 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHhcC---CCeEEEEccCCCChHHHHHHHHHHHHH
Q psy12659 178 FTPTQIEAIRAGMQ---PGLTLVVGPPGTGKTDVAVQIISNLYH 218 (1051)
Q Consensus 178 ln~~Q~~Ai~~~l~---~~~~lI~GPPGTGKT~ti~~ii~~l~~ 218 (1051)
-.+...+.+...+. .+..+|.||||||||+++..+...+..
T Consensus 21 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~ 64 (319)
T 2chq_A 21 GQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG 64 (319)
T ss_dssp SCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcC
Confidence 35667777777664 224899999999999999999888753
No 275
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.54 E-value=0.019 Score=66.76 Aligned_cols=49 Identities=27% Similarity=0.437 Sum_probs=33.5
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEec----------chHHHHHHHHHHHhc
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTH----------SNQALNQLFEKIISL 883 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~----------SN~Ald~l~e~l~~~ 883 (1051)
+.-.|+.||||||||.++.++...+ +..++.+.. |...+..++......
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~-----~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~ 273 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATI-----GANFIFSPASGIVDKYIGESARIIREMFAYAKEH 273 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH-----TCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHS
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh-----CCCEEEEehhhhccccchHHHHHHHHHHHHHHhc
Confidence 4679999999999999988877653 234555443 345566666665443
No 276
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.53 E-value=0.035 Score=57.41 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=34.1
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecc
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHS 869 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~S 869 (1051)
..+.++.||+|+|||+.+..++.++.. .+++|+++.++
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~--~g~kV~v~k~~ 45 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKI--AKQKIQVFKPE 45 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEEEC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH--CCCEEEEEEec
Confidence 358999999999999999999999877 78999999876
No 277
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.53 E-value=0.019 Score=66.75 Aligned_cols=25 Identities=44% Similarity=0.733 Sum_probs=20.6
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHH
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNL 216 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l 216 (1051)
+.-.|+.||||||||.++.++...+
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4558999999999999988876543
No 278
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.49 E-value=0.019 Score=66.06 Aligned_cols=49 Identities=27% Similarity=0.409 Sum_probs=34.7
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEec----------chHHHHHHHHHHHhc
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTH----------SNQALNQLFEKIISL 883 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~----------SN~Ald~l~e~l~~~ 883 (1051)
+.-.|+.||||||||.++.++...+ +..++.+.. |...+..+++...+.
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~-----~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~ 240 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHT-----DCKFIRVSGAELVQKYIGEGSRMVRELFVMAREH 240 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHH-----TCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHT
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhh-----CCCceEEEhHHhhccccchHHHHHHHHHHHHHHh
Confidence 4568999999999999988776653 234554443 456777777776554
No 279
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.47 E-value=0.024 Score=62.97 Aligned_cols=25 Identities=40% Similarity=0.638 Sum_probs=21.5
Q ss_pred CeEEEECCCCCChhHHHHHHHHHHH
Q psy12659 831 GLTLVVGPPGTGKTDVAVQIISNLY 855 (1051)
Q Consensus 831 ~~tlIqGPPGTGKT~ti~~iI~~ll 855 (1051)
...+|.||||||||+++..+...+-
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4799999999999999888877653
No 280
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.46 E-value=0.022 Score=60.33 Aligned_cols=24 Identities=54% Similarity=0.793 Sum_probs=19.7
Q ss_pred CCeEEEEccCCCChHHHHHHHHHH
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISN 215 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~ 215 (1051)
+.-.+|.||||||||+++..+...
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 345899999999999998887654
No 281
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.45 E-value=0.027 Score=62.53 Aligned_cols=40 Identities=35% Similarity=0.565 Sum_probs=28.8
Q ss_pred CHHHHHHHHHhcC-CCe--EEEEccCCCChHHHHHHHHHHHHH
Q psy12659 179 TPTQIEAIRAGMQ-PGL--TLVVGPPGTGKTDVAVQIISNLYH 218 (1051)
Q Consensus 179 n~~Q~~Ai~~~l~-~~~--~lI~GPPGTGKT~ti~~ii~~l~~ 218 (1051)
++...+.+...+. ..+ .++.||||||||+++..+...+..
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3445555555443 223 899999999999999998887763
No 282
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.45 E-value=0.02 Score=65.97 Aligned_cols=25 Identities=40% Similarity=0.651 Sum_probs=20.3
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHH
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNL 216 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l 216 (1051)
+.-.|+.||||||||.++.++...+
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhh
Confidence 3458999999999999988876543
No 283
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=94.45 E-value=0.06 Score=65.24 Aligned_cols=66 Identities=21% Similarity=0.246 Sum_probs=49.0
Q ss_pred CCHHHHHHHHH---hc-CCCeEEEECCCCCChhHHH-HHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHHhc
Q psy12659 816 LTFHEIEAIRA---GM-QPGLTLVVGPPGTGKTDVA-VQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISL 883 (1051)
Q Consensus 816 Ln~~Q~~Ai~~---~l-~~~~tlIqGPPGTGKT~ti-~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~~~ 883 (1051)
.-+.|++.+.. ++ .+.-.+++.|.|||||-.. .-++..+.. .+.+|+|+++|+.-..++.+.+...
T Consensus 4 ~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~--~~~kvli~t~T~~l~~Qi~~el~~l 74 (620)
T 4a15_A 4 NRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE--RKLKVLYLVRTNSQEEQVIKELRSL 74 (620)
T ss_dssp -CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH--HTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh--cCCeEEEECCCHHHHHHHHHHHHHH
Confidence 34668777763 34 3788999999999999653 444555544 4689999999999999988877543
No 284
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.45 E-value=0.03 Score=62.03 Aligned_cols=39 Identities=26% Similarity=0.377 Sum_probs=28.3
Q ss_pred CHHHHHHHHHhcC----CCeEEEEccCCCChHHHHHHHHHHHH
Q psy12659 179 TPTQIEAIRAGMQ----PGLTLVVGPPGTGKTDVAVQIISNLY 217 (1051)
Q Consensus 179 n~~Q~~Ai~~~l~----~~~~lI~GPPGTGKT~ti~~ii~~l~ 217 (1051)
.+...+.+..++. +...+|.||||||||+++..+...+.
T Consensus 21 ~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3455555554432 45689999999999999988877664
No 285
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.44 E-value=0.034 Score=62.74 Aligned_cols=39 Identities=21% Similarity=0.318 Sum_probs=33.0
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCH
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSN 232 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN 232 (1051)
..+++|.||||+|||+++.+++..+... +.+++.++-.+
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~~E~ 99 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAA--GGIAAFIDAEH 99 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCC
Confidence 5679999999999999999999888865 67788777543
No 286
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.44 E-value=0.032 Score=61.40 Aligned_cols=51 Identities=27% Similarity=0.503 Sum_probs=33.5
Q ss_pred HHHHHHHHhcC-C--CeEEEEccCCCChHHHHHHHHHHHHHc-CCCCeEEEEeCC
Q psy12659 181 TQIEAIRAGMQ-P--GLTLVVGPPGTGKTDVAVQIISNLYHN-FPHQRTLIVTHS 231 (1051)
Q Consensus 181 ~Q~~Ai~~~l~-~--~~~lI~GPPGTGKT~ti~~ii~~l~~~-~p~~riLv~a~S 231 (1051)
...+.+..++. . +..+|.||||||||+++..+...+... .....++-+.++
T Consensus 44 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 98 (353)
T 1sxj_D 44 HAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNAS 98 (353)
T ss_dssp TTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSS
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccc
Confidence 44566666553 2 348999999999999999988877531 112345544443
No 287
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.41 E-value=0.029 Score=62.20 Aligned_cols=54 Identities=19% Similarity=0.292 Sum_probs=38.5
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHHHHhCC------CCcEEEEecchH-HHHHHHHHHHhcCC
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNLYHNFP------HQRTLIVTHSNQ-ALNQLFEKIISLDV 885 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~------~~riLV~a~SN~-Ald~l~e~l~~~~~ 885 (1051)
+.+++|.||||+|||+++.+++.+... + +.+++.++--+. -.+.+.+.+...++
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~--~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~ 167 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQL--PPEKGGLSGKAVYIDTEGTFRWERIENMAKALGL 167 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTS--CGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTC
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhc--ccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCC
Confidence 578999999999999999999887554 3 567777765543 13455555544444
No 288
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.41 E-value=0.044 Score=59.13 Aligned_cols=53 Identities=17% Similarity=0.332 Sum_probs=36.3
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHHHHhC--------CCCcEEEEecchHHHHHHHHHHHhc
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNLYHNF--------PHQRTLIVTHSNQALNQLFEKIISL 883 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ll~~~--------~~~riLV~a~SN~Ald~l~e~l~~~ 883 (1051)
..+++|.||||+|||+++..++..+.... .+.+++.++.-+. .+.+..++...
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~-~~~~~~r~~~~ 90 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP-PTAIHHRLHAL 90 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC-HHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCC-HHHHHHHHHHH
Confidence 67899999999999999999988654310 1357777665443 35555555443
No 289
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.41 E-value=0.039 Score=59.79 Aligned_cols=40 Identities=28% Similarity=0.493 Sum_probs=29.7
Q ss_pred CHHHHHHHHHhcC---CCeEEEECCCCCChhHHHHHHHHHHHH
Q psy12659 817 TFHEIEAIRAGMQ---PGLTLVVGPPGTGKTDVAVQIISNLYH 856 (1051)
Q Consensus 817 n~~Q~~Ai~~~l~---~~~tlIqGPPGTGKT~ti~~iI~~ll~ 856 (1051)
.+...+.+...+. .+..++.||||||||+++..+...+..
T Consensus 30 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~ 72 (327)
T 1iqp_A 30 QEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFG 72 (327)
T ss_dssp CHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred CHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcC
Confidence 3455666665554 235999999999999999988887654
No 290
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=94.40 E-value=0.052 Score=66.52 Aligned_cols=55 Identities=24% Similarity=0.324 Sum_probs=43.5
Q ss_pred HHhcCCCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhCCC
Q psy12659 187 RAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLDV 247 (1051)
Q Consensus 187 ~~~l~~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~~~~ 247 (1051)
..++.....+|+||+|||||+.+ +..+... .+.++++|+...+.++.+++.+.|+
T Consensus 150 ar~l~rk~vlv~apTGSGKT~~a---l~~l~~~---~~gl~l~PtR~LA~Qi~~~l~~~g~ 204 (677)
T 3rc3_A 150 ARAMQRKIIFHSGPTNSGKTYHA---IQKYFSA---KSGVYCGPLKLLAHEIFEKSNAAGV 204 (677)
T ss_dssp HHTSCCEEEEEECCTTSSHHHHH---HHHHHHS---SSEEEEESSHHHHHHHHHHHHHTTC
T ss_pred HHhcCCCEEEEEcCCCCCHHHHH---HHHHHhc---CCeEEEeCHHHHHHHHHHHHHhcCC
Confidence 34567788999999999999933 3334443 3458899999999999999998876
No 291
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=94.40 E-value=0.054 Score=66.15 Aligned_cols=66 Identities=23% Similarity=0.276 Sum_probs=53.5
Q ss_pred CCCCCHHHHHHHHHhc---CCC--eEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHHhc
Q psy12659 813 PFKLTFHEIEAIRAGM---QPG--LTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISL 883 (1051)
Q Consensus 813 ~~~Ln~~Q~~Ai~~~l---~~~--~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~~~ 883 (1051)
++.++..|.+||.... ..+ ..++.|.+|+|||.++++++..+ ++++||++|+...+.++.+.|...
T Consensus 6 ~~~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~~~~~~-----~~~~lvv~~~~~~A~ql~~el~~~ 76 (664)
T 1c4o_A 6 GPSPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEAL-----GRPALVLAPNKILAAQLAAEFREL 76 (664)
T ss_dssp SCCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH-----TCCEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHHHHHHh-----CCCEEEEecCHHHHHHHHHHHHHH
Confidence 4567777888877543 333 45789999999999999988764 457999999999999999999876
No 292
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.40 E-value=0.067 Score=60.19 Aligned_cols=60 Identities=17% Similarity=0.341 Sum_probs=45.8
Q ss_pred HHHHHHHhcC-CCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHh
Q psy12659 182 QIEAIRAGMQ-PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIIS 244 (1051)
Q Consensus 182 Q~~Ai~~~l~-~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~ 244 (1051)
..+.+..++. ..+++|-|+||+|||+++.+++.++... +.+|++++--.. ..++..|+..
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~--g~~Vl~fSlEms-~~ql~~Rlls 95 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALND--DRGVAVFSLEMS-AEQLALRALS 95 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHT--TCEEEEEESSSC-HHHHHHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCCCC-HHHHHHHHHH
Confidence 3344445665 5699999999999999999999988874 789999987543 3566777654
No 293
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.39 E-value=0.032 Score=61.86 Aligned_cols=54 Identities=22% Similarity=0.255 Sum_probs=37.6
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEe-C--CHHHHHHHHHHHHhCCC
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVT-H--SNQALNQLFEKIISLDV 247 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a-~--SN~Avd~l~~rl~~~~~ 247 (1051)
+.+.+|.||+|+||||++..+...+... +.+|++++ . ...|.+++.......++
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~--g~kV~lv~~D~~r~~a~eqL~~~~~~~gl 160 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDE--GKSVVLAAADTFRAAAIEQLKIWGERVGA 160 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEECTTCHHHHHHHHHHHHHHTC
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhc--CCEEEEEccccccHHHHHHHHHHHHHcCC
Confidence 4578999999999999999998777654 66777664 3 34555555444433444
No 294
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.37 E-value=0.019 Score=62.84 Aligned_cols=24 Identities=42% Similarity=0.576 Sum_probs=20.1
Q ss_pred CCeEEEEccCCCChHHHHHHHHHH
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISN 215 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~ 215 (1051)
+...+|.||||||||+++..+...
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 456899999999999998877654
No 295
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.36 E-value=0.044 Score=55.74 Aligned_cols=40 Identities=23% Similarity=0.225 Sum_probs=33.3
Q ss_pred CeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecchHH
Q psy12659 831 GLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQA 872 (1051)
Q Consensus 831 ~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~SN~A 872 (1051)
.+..|.||+|+||||++..++..|-. .+.+|.++.+....
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~--~g~~v~~ik~~~~~ 44 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR--EGWRVGTVKHHGHG 44 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEECCC--
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh--cCCeeeEEEeCCCC
Confidence 57899999999999999999998776 67889998877664
No 296
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=94.34 E-value=0.037 Score=59.77 Aligned_cols=40 Identities=30% Similarity=0.515 Sum_probs=30.1
Q ss_pred CHHHHHHHHHhcCC---CeEEEECCCCCChhHHHHHHHHHHHH
Q psy12659 817 TFHEIEAIRAGMQP---GLTLVVGPPGTGKTDVAVQIISNLYH 856 (1051)
Q Consensus 817 n~~Q~~Ai~~~l~~---~~tlIqGPPGTGKT~ti~~iI~~ll~ 856 (1051)
.+...+.+...+.. +..++.||||||||+++..+...+..
T Consensus 22 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~ 64 (319)
T 2chq_A 22 QDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG 64 (319)
T ss_dssp CHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcC
Confidence 44566666666552 24899999999999999988887753
No 297
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.33 E-value=0.037 Score=62.62 Aligned_cols=38 Identities=18% Similarity=0.373 Sum_probs=32.8
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCC
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHS 231 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~S 231 (1051)
..+++|.||||+|||+++.+++.++... +.++++++-.
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~--g~~vlyid~E 100 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAE 100 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCC
Confidence 5689999999999999999999988876 6688887764
No 298
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.32 E-value=0.034 Score=61.19 Aligned_cols=37 Identities=30% Similarity=0.619 Sum_probs=28.1
Q ss_pred HHHHHHHhcC-C--CeEEEECCCCCChhHHHHHHHHHHHH
Q psy12659 820 EIEAIRAGMQ-P--GLTLVVGPPGTGKTDVAVQIISNLYH 856 (1051)
Q Consensus 820 Q~~Ai~~~l~-~--~~tlIqGPPGTGKT~ti~~iI~~ll~ 856 (1051)
..+.+..++. . +..++.||||||||+++..+...+..
T Consensus 45 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~ 84 (353)
T 1sxj_D 45 AVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYG 84 (353)
T ss_dssp THHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4555666555 2 45899999999999999888887653
No 299
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.32 E-value=0.03 Score=63.49 Aligned_cols=39 Identities=15% Similarity=0.244 Sum_probs=32.3
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCH
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSN 232 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN 232 (1051)
..+++|.||||+|||+++.+++..+... +.+++.++.-+
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~--gg~VlyId~E~ 99 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKM--GGVAAFIDAEH 99 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEeccc
Confidence 4579999999999999999999888765 66787776544
No 300
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.31 E-value=0.038 Score=64.27 Aligned_cols=59 Identities=15% Similarity=0.298 Sum_probs=45.2
Q ss_pred HHHHHHhcC-CCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHHh
Q psy12659 821 IEAIRAGMQ-PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIIS 882 (1051)
Q Consensus 821 ~~Ai~~~l~-~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~~ 882 (1051)
.+.+..++. +.+++|.|+||+|||+++.+++.++.. .+.+|++++-- ...+++..++..
T Consensus 187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~--~g~~vl~fSlE-ms~~ql~~R~~~ 246 (444)
T 3bgw_A 187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD--NDDVVNLHSLE-MGKKENIKRLIV 246 (444)
T ss_dssp HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHH--TTCEEEEECSS-SCTTHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHH--cCCEEEEEECC-CCHHHHHHHHHH
Confidence 344445676 679999999999999999999999887 47899998864 334456666654
No 301
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.31 E-value=0.021 Score=61.09 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=20.7
Q ss_pred CCeEEEECCCCCChhHHHHHHHHH
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISN 853 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ 853 (1051)
+...+|.||||||||+++..+...
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 467899999999999999877765
No 302
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.30 E-value=0.023 Score=56.36 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=20.1
Q ss_pred CCeEEEEccCCCChHHHHHHHHHH
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISN 215 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~ 215 (1051)
+.+.+|.||||+||||++..+...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457899999999999998887554
No 303
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.30 E-value=0.044 Score=55.75 Aligned_cols=40 Identities=23% Similarity=0.237 Sum_probs=32.8
Q ss_pred CeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCHHH
Q psy12659 193 GLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQA 234 (1051)
Q Consensus 193 ~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN~A 234 (1051)
.+..|.||+|+||||++..++..+-.. +.+|-++.+....
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~--g~~v~~ik~~~~~ 44 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVRE--GWRVGTVKHHGHG 44 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEECCC--
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhc--CCeeeEEEeCCCC
Confidence 578899999999999999999988765 7788888876654
No 304
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.28 E-value=0.02 Score=63.07 Aligned_cols=34 Identities=26% Similarity=0.341 Sum_probs=24.9
Q ss_pred HHHHHHHhcC-CCeEEEECCCCCChhHHHHHHHHH
Q psy12659 820 EIEAIRAGMQ-PGLTLVVGPPGTGKTDVAVQIISN 853 (1051)
Q Consensus 820 Q~~Ai~~~l~-~~~tlIqGPPGTGKT~ti~~iI~~ 853 (1051)
.++++..++. ++-.++.||||||||+++..+...
T Consensus 35 ~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~ 69 (331)
T 2r44_A 35 MINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKT 69 (331)
T ss_dssp HHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3444444443 678999999999999998877554
No 305
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.27 E-value=0.029 Score=63.59 Aligned_cols=37 Identities=16% Similarity=0.242 Sum_probs=30.0
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEec
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTH 868 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~ 868 (1051)
..+++|.||||+|||+++.+++..+.. .+.+|+.++.
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~--~gg~VlyId~ 97 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQK--MGGVAAFIDA 97 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEES
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEec
Confidence 568999999999999999999998776 4556655544
No 306
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.25 E-value=0.03 Score=62.95 Aligned_cols=25 Identities=36% Similarity=0.608 Sum_probs=20.6
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHH
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNL 216 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l 216 (1051)
....++.||||||||+++..+...+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999999888776544
No 307
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.22 E-value=0.021 Score=62.49 Aligned_cols=24 Identities=42% Similarity=0.576 Sum_probs=20.2
Q ss_pred CCeEEEECCCCCChhHHHHHHHHH
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISN 853 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ 853 (1051)
+...++.||||||||+++..+...
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 456899999999999998876654
No 308
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.22 E-value=0.033 Score=56.96 Aligned_cols=35 Identities=31% Similarity=0.305 Sum_probs=28.7
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecc
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHS 869 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~S 869 (1051)
+.+++|.||||+|||+++.++.. . ++.+++.++..
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~---~--~~~~v~~i~~~ 54 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL---L--SGKKVAYVDTE 54 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH---H--HCSEEEEEESS
T ss_pred CEEEEEECCCCCCHHHHHHHHHH---H--cCCcEEEEECC
Confidence 57899999999999999999887 3 46677777643
No 309
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.19 E-value=0.058 Score=63.85 Aligned_cols=44 Identities=23% Similarity=0.353 Sum_probs=34.7
Q ss_pred CeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEec---chHHHHHH
Q psy12659 831 GLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTH---SNQALNQL 876 (1051)
Q Consensus 831 ~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~---SN~Ald~l 876 (1051)
...+|.|+||+||||++.++...+-. .+++|++++. ...|.+++
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~--~G~kVllVd~D~~r~aa~~qL 148 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQR--KGWKTCLICADTFRAGAFDQL 148 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEEECCSSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEeccccchhHHHHH
Confidence 46788899999999999999988776 5788888775 44555554
No 310
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=94.19 E-value=0.095 Score=63.03 Aligned_cols=71 Identities=11% Similarity=0.101 Sum_probs=59.3
Q ss_pred CCCCCCHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHHh
Q psy12659 812 PPFKLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIIS 882 (1051)
Q Consensus 812 ~~~~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~~ 882 (1051)
.|+.|++-|+..+...-.....+|.+|.|+|||++++.++...+...++.+|+++++|...+..+++.+..
T Consensus 160 ~~~~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~ 230 (592)
T 3cpe_A 160 IKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQ 230 (592)
T ss_dssp BBCCCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred ccCcCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 45789999999988764467899999999999999998877666656778999999999988888887754
No 311
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.18 E-value=0.037 Score=61.38 Aligned_cols=38 Identities=29% Similarity=0.409 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcC----CCeEEEECCCCCChhHHHHHHHHHHH
Q psy12659 818 FHEIEAIRAGMQ----PGLTLVVGPPGTGKTDVAVQIISNLY 855 (1051)
Q Consensus 818 ~~Q~~Ai~~~l~----~~~tlIqGPPGTGKT~ti~~iI~~ll 855 (1051)
....+.+..++. +...+|.||||||||+++..+...+.
T Consensus 22 ~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 22 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp HHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 334444444443 44689999999999999988877663
No 312
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=94.18 E-value=0.077 Score=65.00 Aligned_cols=59 Identities=22% Similarity=0.261 Sum_probs=45.9
Q ss_pred HHHHHhcCCCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHHhcCCC
Q psy12659 822 EAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLDVD 886 (1051)
Q Consensus 822 ~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~~~~~~ 886 (1051)
.....++.+...+|+||+|+|||..+ +..+.. .++.++++|+...+.++.+++.+.|+.
T Consensus 147 ~p~ar~l~rk~vlv~apTGSGKT~~a---l~~l~~---~~~gl~l~PtR~LA~Qi~~~l~~~g~~ 205 (677)
T 3rc3_A 147 YPDARAMQRKIIFHSGPTNSGKTYHA---IQKYFS---AKSGVYCGPLKLLAHEIFEKSNAAGVP 205 (677)
T ss_dssp CHHHHTSCCEEEEEECCTTSSHHHHH---HHHHHH---SSSEEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CHHHHhcCCCEEEEEcCCCCCHHHHH---HHHHHh---cCCeEEEeCHHHHHHHHHHHHHhcCCc
Confidence 33456678889999999999999833 334444 245699999999999999999887653
No 313
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.18 E-value=0.04 Score=56.26 Aligned_cols=34 Identities=32% Similarity=0.317 Sum_probs=27.8
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeC
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTH 230 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~ 230 (1051)
..+++|.||||+|||+++..++. .. +.++++++.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~---~~--~~~v~~i~~ 53 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL---LS--GKKVAYVDT 53 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH---HH--CSEEEEEES
T ss_pred CEEEEEECCCCCCHHHHHHHHHH---Hc--CCcEEEEEC
Confidence 56899999999999999999987 33 567777664
No 314
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.17 E-value=0.018 Score=63.36 Aligned_cols=37 Identities=24% Similarity=0.346 Sum_probs=26.3
Q ss_pred HHHHHHHHHhc-CCCeEEEEccCCCChHHHHHHHHHHH
Q psy12659 180 PTQIEAIRAGM-QPGLTLVVGPPGTGKTDVAVQIISNL 216 (1051)
Q Consensus 180 ~~Q~~Ai~~~l-~~~~~lI~GPPGTGKT~ti~~ii~~l 216 (1051)
+...+++..++ ..+-.++.||||||||+++..+...+
T Consensus 33 ~~~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 33 KYMINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp HHHHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 34445554443 36678999999999999988775543
No 315
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.17 E-value=0.051 Score=59.17 Aligned_cols=25 Identities=44% Similarity=0.635 Sum_probs=21.1
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHH
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNL 216 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l 216 (1051)
....+|.||||||||+++..+...+
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999998886654
No 316
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.15 E-value=0.044 Score=60.39 Aligned_cols=38 Identities=18% Similarity=0.357 Sum_probs=30.5
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeC
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTH 230 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~ 230 (1051)
+.+.+|.||+|+||||++..+...+... .|.+|++++.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~-~G~~V~lv~~ 142 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLE-KHKKIAFITT 142 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCCEEEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh-cCCEEEEEec
Confidence 5688999999999999999998776642 2678887753
No 317
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.15 E-value=0.039 Score=61.98 Aligned_cols=24 Identities=50% Similarity=0.725 Sum_probs=20.3
Q ss_pred CCeEEEEccCCCChHHHHHHHHHH
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISN 215 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~ 215 (1051)
+...||.||||||||+++..+...
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999888554
No 318
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.14 E-value=0.041 Score=62.56 Aligned_cols=38 Identities=21% Similarity=0.344 Sum_probs=32.0
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecc
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHS 869 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~S 869 (1051)
..+++|.||||+|||+++.+++.++.. .+.+|+.++.-
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~--~g~~vlyi~~E 111 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQK--AGGTCAFIDAE 111 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESS
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHH--CCCeEEEEECC
Confidence 578999999999999999999999877 56677777643
No 319
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.14 E-value=0.022 Score=63.15 Aligned_cols=48 Identities=25% Similarity=0.436 Sum_probs=33.1
Q ss_pred CeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEe----------cchHHHHHHHHHHHh
Q psy12659 831 GLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVT----------HSNQALNQLFEKIIS 882 (1051)
Q Consensus 831 ~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a----------~SN~Ald~l~e~l~~ 882 (1051)
.-.++.||||||||+++..+...+ .+..++.+. .+...+..+++....
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~----~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~ 103 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA----NNSTFFSISSSDLVSKWLGESEKLVKNLFQLARE 103 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT----TSCEEEEEECCSSCCSSCCSCHHHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHHc----CCCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHHh
Confidence 568999999999999998877654 123333332 245677777776654
No 320
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.13 E-value=0.055 Score=63.03 Aligned_cols=23 Identities=43% Similarity=0.631 Sum_probs=19.3
Q ss_pred CeEEEEccCCCChHHHHHHHHHH
Q psy12659 193 GLTLVVGPPGTGKTDVAVQIISN 215 (1051)
Q Consensus 193 ~~~lI~GPPGTGKT~ti~~ii~~ 215 (1051)
+..+|+||||||||+++..+...
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999988776554
No 321
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.12 E-value=0.052 Score=61.10 Aligned_cols=60 Identities=15% Similarity=0.324 Sum_probs=46.6
Q ss_pred HHHHHHHhcC-CCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHHh
Q psy12659 820 EIEAIRAGMQ-PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIIS 882 (1051)
Q Consensus 820 Q~~Ai~~~l~-~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~~ 882 (1051)
..+.+..++. +.+++|.|+||+|||+++.++..++.. .+.+|++++--. ..+++..++..
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlEm-s~~ql~~Rlls 95 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLEM-SAEQLALRALS 95 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESSS-CHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCCC-CHHHHHHHHHH
Confidence 3444455666 679999999999999999999999887 688999998643 34566777654
No 322
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.11 E-value=0.049 Score=63.17 Aligned_cols=25 Identities=36% Similarity=0.535 Sum_probs=20.8
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHH
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNL 216 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l 216 (1051)
+.-.||.||||||||+++..+...+
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 3568999999999999988876654
No 323
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.11 E-value=0.042 Score=63.51 Aligned_cols=54 Identities=24% Similarity=0.436 Sum_probs=40.3
Q ss_pred CCCCCCHHHHHHHHHhcC--CCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEe
Q psy12659 174 NTIPFTPTQIEAIRAGMQ--PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVT 229 (1051)
Q Consensus 174 ~~~~ln~~Q~~Ai~~~l~--~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a 229 (1051)
..+.+...+..++..++. .++.+|.||+|+||||++..++..+-. ...+|++.-
T Consensus 147 ~~Lg~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l~~--~~g~I~~~e 202 (418)
T 1p9r_A 147 HSLGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNS--SERNILTVE 202 (418)
T ss_dssp GGSCCCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHHCC--TTSCEEEEE
T ss_pred HHcCCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhcCC--CCCEEEEec
Confidence 345678888888877653 578999999999999999998775432 245677654
No 324
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.10 E-value=0.022 Score=61.84 Aligned_cols=20 Identities=45% Similarity=0.793 Sum_probs=17.7
Q ss_pred EEEEccCCCChHHHHHHHHH
Q psy12659 195 TLVVGPPGTGKTDVAVQIIS 214 (1051)
Q Consensus 195 ~lI~GPPGTGKT~ti~~ii~ 214 (1051)
.+|.||||||||+++..+..
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 89999999999998887654
No 325
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.09 E-value=0.028 Score=65.23 Aligned_cols=35 Identities=23% Similarity=0.444 Sum_probs=30.7
Q ss_pred CeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEe
Q psy12659 193 GLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVT 229 (1051)
Q Consensus 193 ~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a 229 (1051)
.+.+|.||||+||||++..+...+... +.+|++++
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~--G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKR--GLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHH--HCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEe
Confidence 478899999999999999999888876 77888875
No 326
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.08 E-value=0.076 Score=61.72 Aligned_cols=59 Identities=25% Similarity=0.460 Sum_probs=45.0
Q ss_pred HHHHHHhcC-CCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHH
Q psy12659 821 IEAIRAGMQ-PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKII 881 (1051)
Q Consensus 821 ~~Ai~~~l~-~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~ 881 (1051)
.+.+..++. +.+++|.||||+|||+++.++..++... .+.+|++++.-..+ .++..++.
T Consensus 193 LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~s~-~~l~~r~~ 252 (454)
T 2r6a_A 193 LDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEMSA-QQLVMRML 252 (454)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSSCH-HHHHHHHH
T ss_pred HHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCCCH-HHHHHHHH
Confidence 444445666 6799999999999999999999988753 36789998865443 56777764
No 327
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.06 E-value=0.027 Score=55.87 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=20.2
Q ss_pred CCeEEEECCCCCChhHHHHHHHHH
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISN 853 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ 853 (1051)
+.+.+|.||||+||||++..+...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457899999999999998877654
No 328
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.05 E-value=0.027 Score=65.42 Aligned_cols=35 Identities=23% Similarity=0.433 Sum_probs=30.4
Q ss_pred CeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEe
Q psy12659 831 GLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVT 867 (1051)
Q Consensus 831 ~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a 867 (1051)
...+|.||||+||||++..+...+.. .+.+|++++
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~--~G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQK--RGLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHH--HHCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEe
Confidence 47889999999999999999988876 578888776
No 329
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.04 E-value=0.025 Score=63.31 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=21.4
Q ss_pred CCeEEEECCCCCChhHHHHHHHHH
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISN 853 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ 853 (1051)
+..++|.||||||||+++.++..+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 466899999999999999999876
No 330
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.04 E-value=0.029 Score=62.41 Aligned_cols=24 Identities=50% Similarity=0.751 Sum_probs=20.2
Q ss_pred CeEEEEccCCCChHHHHHHHHHHH
Q psy12659 193 GLTLVVGPPGTGKTDVAVQIISNL 216 (1051)
Q Consensus 193 ~~~lI~GPPGTGKT~ti~~ii~~l 216 (1051)
+..+|.|||||||||++..+...+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 679999999999999887776544
No 331
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.03 E-value=0.046 Score=64.63 Aligned_cols=24 Identities=38% Similarity=0.671 Sum_probs=20.8
Q ss_pred CeEEEEccCCCChHHHHHHHHHHH
Q psy12659 193 GLTLVVGPPGTGKTDVAVQIISNL 216 (1051)
Q Consensus 193 ~~~lI~GPPGTGKT~ti~~ii~~l 216 (1051)
...+|.||||||||+++..+...+
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 579999999999999998876654
No 332
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.02 E-value=0.03 Score=54.87 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=19.3
Q ss_pred eEEEEccCCCChHHHHHHHHHHH
Q psy12659 194 LTLVVGPPGTGKTDVAVQIISNL 216 (1051)
Q Consensus 194 ~~lI~GPPGTGKT~ti~~ii~~l 216 (1051)
+.+|.||||+||||++..+...+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999988776543
No 333
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.02 E-value=0.043 Score=62.22 Aligned_cols=37 Identities=27% Similarity=0.354 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHhc---------------CCCeEEEEccCCCChHHHHHHHHH
Q psy12659 178 FTPTQIEAIRAGM---------------QPGLTLVVGPPGTGKTDVAVQIIS 214 (1051)
Q Consensus 178 ln~~Q~~Ai~~~l---------------~~~~~lI~GPPGTGKT~ti~~ii~ 214 (1051)
-.+.+++.+...+ ...-.||.||||||||+++..+..
T Consensus 119 G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 119 GQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp SCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3566777776554 245689999999999999887744
No 334
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.02 E-value=0.044 Score=56.89 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=29.6
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHHHHhC----CCCcEEEEecch
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNLYHNF----PHQRTLIVTHSN 870 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ll~~~----~~~riLV~a~SN 870 (1051)
..+++|.||||+|||+++..++.+.+... .+.+++.++..+
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 57899999999999999999988643311 145666665433
No 335
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.00 E-value=0.058 Score=63.85 Aligned_cols=53 Identities=19% Similarity=0.299 Sum_probs=39.1
Q ss_pred CeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeC---CHHHHHHHHHHHHhCCC
Q psy12659 193 GLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTH---SNQALNQLFEKIISLDV 247 (1051)
Q Consensus 193 ~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~---SN~Avd~l~~rl~~~~~ 247 (1051)
.+.+|.|+||+||||++..+...+... +.++++++. .+.|++++...-...++
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~--G~kVllVd~D~~r~aa~~qL~~~~~~~~i 157 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQRK--GWKTCLICADTFRAGAFDQLKQNATKARI 157 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEECCSSSHHHHHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEeccccchhHHHHHHHHhhccCc
Confidence 367788999999999999999888765 778887764 56676665443333344
No 336
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.98 E-value=0.071 Score=55.47 Aligned_cols=51 Identities=27% Similarity=0.290 Sum_probs=33.7
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHHH-HhCCCCcEEEEecchHHHHHHHHHHHhc
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNLY-HNFPHQRTLIVTHSNQALNQLFEKIISL 883 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ll-~~~~~~riLV~a~SN~Ald~l~e~l~~~ 883 (1051)
+.++.|.||+|+||||++..++...+ . ++..++++..... ...+.++....
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~ 81 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEE--YGEPGVFVTLEER-ARDLRREMASF 81 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSSC-HHHHHHHHHTT
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEEccCC-HHHHHHHHHHc
Confidence 67999999999999999998886555 4 4455555554322 23444444333
No 337
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=93.98 E-value=0.12 Score=62.19 Aligned_cols=69 Identities=12% Similarity=0.141 Sum_probs=57.5
Q ss_pred CCCCHHHHHHHHHhcCCCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHh
Q psy12659 176 IPFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIIS 244 (1051)
Q Consensus 176 ~~ln~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~ 244 (1051)
+.|++-|+..+.........+|.+|.|+|||++++.++...+...|+.+|+++++|-..+..+++.+..
T Consensus 162 ~~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~ 230 (592)
T 3cpe_A 162 VQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQ 230 (592)
T ss_dssp CCCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 579999999887653457799999999999999998776666666778999999999888888877754
No 338
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.97 E-value=0.046 Score=60.23 Aligned_cols=55 Identities=20% Similarity=0.233 Sum_probs=38.2
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEec---chHHHHHHHHHHHhcCC
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTH---SNQALNQLFEKIISLDV 885 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~---SN~Ald~l~e~l~~~~~ 885 (1051)
+.+.+|.||+|+||||++..+...+-. ..|++|++++. ...|.+++.......++
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~-~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl 162 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISML-EKHKKIAFITTDTYRIAAVEQLKTYAELLQA 162 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHH-TTCCCEEEEECCCSSTTHHHHHHHHHTTTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH-hcCCEEEEEecCcccchHHHHHHHHHHhcCC
Confidence 568999999999999999998877653 24778888764 33455555443333333
No 339
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=93.95 E-value=0.073 Score=63.37 Aligned_cols=64 Identities=17% Similarity=0.318 Sum_probs=48.6
Q ss_pred CCCHHHHHHHHH---hc-CCCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhC
Q psy12659 177 PFTPTQIEAIRA---GM-QPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISL 245 (1051)
Q Consensus 177 ~ln~~Q~~Ai~~---~l-~~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~~ 245 (1051)
.+-+.|.+++.. ++ ...-.+|+.|+|||||-.. ++-.+. . +.+++|++||+.-.+++.+.+...
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~--l~p~l~-~--~~~v~i~~pt~~l~~q~~~~~~~l 70 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFS--LLVSLE-V--KPKVLFVVRTHNEFYPIYRDLTKI 70 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHH--HHHHHH-H--CSEEEEEESSGGGHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHH--HHHHHh-C--CCeEEEEcCCHHHHHHHHHHHHHH
Confidence 456889986654 33 4678999999999996544 333333 3 679999999999999999888765
No 340
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.95 E-value=0.03 Score=64.87 Aligned_cols=25 Identities=36% Similarity=0.566 Sum_probs=20.5
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHH
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNL 216 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l 216 (1051)
+.-.|+.||||||||.++.++...+
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHHHh
Confidence 3558999999999999988876543
No 341
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.95 E-value=0.03 Score=64.93 Aligned_cols=49 Identities=24% Similarity=0.299 Sum_probs=33.5
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEec----------chHHHHHHHHHHHhc
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTH----------SNQALNQLFEKIISL 883 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~----------SN~Ald~l~e~l~~~ 883 (1051)
+.-.|+.||||||||.++.++...+- ..++.+.. |...+..+++...+.
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~~-----~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~ 274 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQTS-----ATFLRIVGSELIQKYLGDGPRLCRQIFKVAGEN 274 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHHT-----CEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHT
T ss_pred CCCCceECCCCchHHHHHHHHHHHhC-----CCEEEEEHHHhhhccCchHHHHHHHHHHHHHhc
Confidence 46699999999999999887776532 34444443 445666777666543
No 342
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.94 E-value=0.08 Score=58.33 Aligned_cols=54 Identities=28% Similarity=0.270 Sum_probs=38.6
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecc---hHHHHHHHHHHHhcCC
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHS---NQALNQLFEKIISLDV 885 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~S---N~Ald~l~e~l~~~~~ 885 (1051)
+.+.++.||+|+||||++..+...+-. .+.+|+++..- +.|.+++.......++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~--~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v 154 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK--KGFKVGLVGADVYRPAALEQLQQLGQQIGV 154 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH--TTCCEEEEECCCSSSHHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEecCCCCHHHHHHHHHHhccCCe
Confidence 457888899999999999999887766 57788877653 4566555443333344
No 343
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.93 E-value=0.036 Score=55.31 Aligned_cols=26 Identities=31% Similarity=0.493 Sum_probs=21.6
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHHH
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNLY 217 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l~ 217 (1051)
+.+.+|.||||+||||++..+...+-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34789999999999999888876554
No 344
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.93 E-value=0.042 Score=60.73 Aligned_cols=42 Identities=19% Similarity=0.333 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHhc-C---CCeEEEEccCCCChHHHHHHHHHHHHHc
Q psy12659 178 FTPTQIEAIRAGM-Q---PGLTLVVGPPGTGKTDVAVQIISNLYHN 219 (1051)
Q Consensus 178 ln~~Q~~Ai~~~l-~---~~~~lI~GPPGTGKT~ti~~ii~~l~~~ 219 (1051)
-++...+++..++ . .+..+|.|||||||||++..+...++..
T Consensus 18 g~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~ 63 (354)
T 1sxj_E 18 HNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGP 63 (354)
T ss_dssp SCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCT
T ss_pred CCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 4667778888776 3 1238999999999999998888777643
No 345
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.92 E-value=0.049 Score=61.87 Aligned_cols=39 Identities=21% Similarity=0.341 Sum_probs=33.4
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCH
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSN 232 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN 232 (1051)
..+++|.||||+|||+++.+++.++... +.+++.++.-+
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E~ 112 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAEH 112 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSC
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECCC
Confidence 5689999999999999999999988866 67888887654
No 346
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.92 E-value=0.062 Score=58.26 Aligned_cols=57 Identities=14% Similarity=0.154 Sum_probs=39.6
Q ss_pred HHHHhcC-CCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHH
Q psy12659 823 AIRAGMQ-PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKII 881 (1051)
Q Consensus 823 Ai~~~l~-~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~ 881 (1051)
.+...+. +.+++|.||||+|||+++..+...+... .+.+|++++.... ..++..++.
T Consensus 27 ~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~-~G~~v~~~~~e~~-~~~~~~r~~ 84 (296)
T 1cr0_A 27 DKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA-MGKKVGLAMLEES-VEETAEDLI 84 (296)
T ss_dssp HHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT-SCCCEEEEESSSC-HHHHHHHHH
T ss_pred HHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH-cCCeEEEEeCcCC-HHHHHHHHH
Confidence 3444455 6799999999999999999988877652 3668888775432 234444543
No 347
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.88 E-value=0.041 Score=61.86 Aligned_cols=25 Identities=36% Similarity=0.608 Sum_probs=20.6
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHH
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNL 854 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~l 854 (1051)
....++.||||||||+++..+...+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999999888776554
No 348
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.87 E-value=0.063 Score=58.43 Aligned_cols=25 Identities=44% Similarity=0.635 Sum_probs=21.1
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHH
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNL 854 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~l 854 (1051)
....+|.||||||||+++..+...+
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHh
Confidence 3678999999999999998876654
No 349
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.85 E-value=0.049 Score=56.56 Aligned_cols=40 Identities=15% Similarity=0.204 Sum_probs=28.9
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHHHHcC----CCCeEEEEeCC
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNLYHNF----PHQRTLIVTHS 231 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l~~~~----p~~riLv~a~S 231 (1051)
..+++|.||||+|||+++..++.+..... .+.+++.++-.
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~ 67 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE 67 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC
Confidence 56899999999999999999987643311 14566666543
No 350
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=93.84 E-value=0.037 Score=61.54 Aligned_cols=24 Identities=50% Similarity=0.751 Sum_probs=19.9
Q ss_pred CeEEEECCCCCChhHHHHHHHHHH
Q psy12659 831 GLTLVVGPPGTGKTDVAVQIISNL 854 (1051)
Q Consensus 831 ~~tlIqGPPGTGKT~ti~~iI~~l 854 (1051)
..+++.|||||||||++..+...+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 679999999999999887665544
No 351
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.84 E-value=0.077 Score=57.54 Aligned_cols=56 Identities=14% Similarity=0.159 Sum_probs=38.9
Q ss_pred HHHhcC-CCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHH
Q psy12659 186 IRAGMQ-PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKII 243 (1051)
Q Consensus 186 i~~~l~-~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~ 243 (1051)
+...+. ..+++|.||||+||||++..+...+... .+.+|++++.... ..++..++.
T Consensus 28 i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~-~G~~v~~~~~e~~-~~~~~~r~~ 84 (296)
T 1cr0_A 28 KTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA-MGKKVGLAMLEES-VEETAEDLI 84 (296)
T ss_dssp HHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT-SCCCEEEEESSSC-HHHHHHHHH
T ss_pred HhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH-cCCeEEEEeCcCC-HHHHHHHHH
Confidence 333444 5689999999999999999998877654 2557888775432 234555554
No 352
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.83 E-value=0.029 Score=65.52 Aligned_cols=49 Identities=31% Similarity=0.398 Sum_probs=33.7
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEec----------chHHHHHHHHHHHhc
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTH----------SNQALNQLFEKIISL 883 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~----------SN~Ald~l~e~l~~~ 883 (1051)
+.-.|+.||||||||.++.++...+- ..++.+.. |...+..++......
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~e~~-----~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~~ 301 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVANRTD-----ATFIRVIGSELVQKYVGEGARMVRELFEMARTK 301 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHHHHT-----CEEEEEEGGGGCCCSSSHHHHHHHHHHHHHHHT
T ss_pred CCceEeeCCCCCcHHHHHHHHHhccC-----CCeEEEEhHHhhcccCCHHHHHHHHHHHHHHhc
Confidence 56799999999999998887766532 34554443 445667777666544
No 353
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.82 E-value=0.091 Score=54.67 Aligned_cols=52 Identities=27% Similarity=0.296 Sum_probs=34.0
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHHH-HcCCCCeEEEEeCCHHHHHHHHHHHHhCC
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNLY-HNFPHQRTLIVTHSNQALNQLFEKIISLD 246 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l~-~~~p~~riLv~a~SN~Avd~l~~rl~~~~ 246 (1051)
..++.|.||+|+||||++..++...+ .. +..++++..... ...+.++....+
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~g 82 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY--GEPGVFVTLEER-ARDLRREMASFG 82 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH--CCCEEEEESSSC-HHHHHHHHHTTT
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEEccCC-HHHHHHHHHHcC
Confidence 56899999999999999999886555 44 445555543322 234444444444
No 354
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.82 E-value=0.048 Score=61.24 Aligned_cols=24 Identities=50% Similarity=0.725 Sum_probs=20.5
Q ss_pred CCeEEEECCCCCChhHHHHHHHHH
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISN 853 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ 853 (1051)
+...+|.||||||||+++..+...
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 567899999999999999877654
No 355
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.81 E-value=0.038 Score=55.11 Aligned_cols=26 Identities=31% Similarity=0.493 Sum_probs=21.7
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHHH
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNLY 855 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ll 855 (1051)
+.+.+|.||||+||||++..+...+-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999888777654
No 356
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.80 E-value=0.029 Score=55.36 Aligned_cols=22 Identities=36% Similarity=0.671 Sum_probs=19.0
Q ss_pred CeEEEEccCCCChHHHHHHHHH
Q psy12659 193 GLTLVVGPPGTGKTDVAVQIIS 214 (1051)
Q Consensus 193 ~~~lI~GPPGTGKT~ti~~ii~ 214 (1051)
.+.+|.||||+||||++..+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3678999999999999888765
No 357
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.80 E-value=0.068 Score=62.23 Aligned_cols=23 Identities=43% Similarity=0.631 Sum_probs=19.1
Q ss_pred CeEEEECCCCCChhHHHHHHHHH
Q psy12659 831 GLTLVVGPPGTGKTDVAVQIISN 853 (1051)
Q Consensus 831 ~~tlIqGPPGTGKT~ti~~iI~~ 853 (1051)
...+++||||||||+++..+...
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999988766554
No 358
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.78 E-value=0.031 Score=54.42 Aligned_cols=20 Identities=35% Similarity=0.718 Sum_probs=17.6
Q ss_pred CeEEEEccCCCChHHHHHHH
Q psy12659 193 GLTLVVGPPGTGKTDVAVQI 212 (1051)
Q Consensus 193 ~~~lI~GPPGTGKT~ti~~i 212 (1051)
.+.+|.||||+||||++..+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36789999999999988877
No 359
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=93.78 E-value=0.033 Score=61.28 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=19.6
Q ss_pred CeEEEECCCCCChhHHHHHHHHH
Q psy12659 831 GLTLVVGPPGTGKTDVAVQIISN 853 (1051)
Q Consensus 831 ~~tlIqGPPGTGKT~ti~~iI~~ 853 (1051)
...+|.||||||||+++..+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 57899999999999998877544
No 360
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=93.77 E-value=0.042 Score=60.45 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=19.5
Q ss_pred CeEEEEccCCCChHHHHHHHHHH
Q psy12659 193 GLTLVVGPPGTGKTDVAVQIISN 215 (1051)
Q Consensus 193 ~~~lI~GPPGTGKT~ti~~ii~~ 215 (1051)
+..+|.||||||||+++..+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999999998887443
No 361
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.77 E-value=0.034 Score=62.55 Aligned_cols=24 Identities=38% Similarity=0.630 Sum_probs=20.3
Q ss_pred CeEEEEccCCCChHHHHHHHHHHH
Q psy12659 193 GLTLVVGPPGTGKTDVAVQIISNL 216 (1051)
Q Consensus 193 ~~~lI~GPPGTGKT~ti~~ii~~l 216 (1051)
.-.||.||||||||+++..+...+
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh
Confidence 347999999999999998887655
No 362
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=93.76 E-value=0.093 Score=64.08 Aligned_cols=65 Identities=25% Similarity=0.316 Sum_probs=52.7
Q ss_pred CCCCHHHHHHHHHh---cCCC--eEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhC
Q psy12659 176 IPFTPTQIEAIRAG---MQPG--LTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISL 245 (1051)
Q Consensus 176 ~~ln~~Q~~Ai~~~---l~~~--~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~~ 245 (1051)
+.++..|.+||... +..+ ..++.|.+|||||.+++.++..+ ++++||++|+...+.++.+.+...
T Consensus 7 ~~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~~~~~~-----~~~~lvv~~~~~~A~ql~~el~~~ 76 (664)
T 1c4o_A 7 PSPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEAL-----GRPALVLAPNKILAAQLAAEFREL 76 (664)
T ss_dssp CCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH-----TCCEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHHHHHHh-----CCCEEEEecCHHHHHHHHHHHHHH
Confidence 46778888888753 3333 46789999999999999987654 347999999999999999999876
No 363
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.76 E-value=0.052 Score=63.20 Aligned_cols=59 Identities=17% Similarity=0.309 Sum_probs=45.1
Q ss_pred HHHHHHhcC-CCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHh
Q psy12659 183 IEAIRAGMQ-PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIIS 244 (1051)
Q Consensus 183 ~~Ai~~~l~-~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~ 244 (1051)
.+.+..++. ..+++|.|+||+|||+++.+++.+...+ +.++++++--.. .+++..|+..
T Consensus 187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEms-~~ql~~R~~~ 246 (444)
T 3bgw_A 187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEMG-KKENIKRLIV 246 (444)
T ss_dssp HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSSC-TTHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCCC-HHHHHHHHHH
Confidence 344445565 5689999999999999999999999877 789999986533 3566666653
No 364
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.74 E-value=0.048 Score=64.06 Aligned_cols=55 Identities=11% Similarity=0.090 Sum_probs=42.9
Q ss_pred HhcC-CCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHHh
Q psy12659 826 AGMQ-PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIIS 882 (1051)
Q Consensus 826 ~~l~-~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~~ 882 (1051)
.++. ..+++|.||||+|||+++.+++.++... .+.+|++++--.. ..++..++..
T Consensus 237 gGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~s-~~~l~~r~~~ 292 (503)
T 1q57_A 237 LGARGGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEES-VEETAEDLIG 292 (503)
T ss_dssp CCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSSC-HHHHHHHHHH
T ss_pred cccCCCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccCC-HHHHHHHHHH
Confidence 4565 6799999999999999999999988762 2788999886443 4577777643
No 365
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.73 E-value=0.025 Score=62.19 Aligned_cols=25 Identities=36% Similarity=0.462 Sum_probs=20.7
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHH
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNL 216 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l 216 (1051)
.+..+|.||||||||+++..+...+
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred CceEEEECCCCccHHHHHHHHHHhC
Confidence 4559999999999999888776643
No 366
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=93.73 E-value=0.03 Score=62.74 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=21.3
Q ss_pred CCeEEEEccCCCChHHHHHHHHHH
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISN 215 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~ 215 (1051)
....+|.||||||||+++.++...
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 456799999999999999999776
No 367
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.71 E-value=0.037 Score=54.22 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=19.3
Q ss_pred eEEEECCCCCChhHHHHHHHHHH
Q psy12659 832 LTLVVGPPGTGKTDVAVQIISNL 854 (1051)
Q Consensus 832 ~tlIqGPPGTGKT~ti~~iI~~l 854 (1051)
+.+|.||||+||||++..+...+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999988776553
No 368
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=93.71 E-value=0.045 Score=63.62 Aligned_cols=25 Identities=48% Similarity=0.788 Sum_probs=21.1
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHH
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNL 854 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~l 854 (1051)
+.-.++.||||||||+++..+...+
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHh
Confidence 3569999999999999998777664
No 369
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.70 E-value=0.074 Score=61.82 Aligned_cols=59 Identities=25% Similarity=0.447 Sum_probs=44.3
Q ss_pred HHHHHHhcC-CCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHH
Q psy12659 183 IEAIRAGMQ-PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKII 243 (1051)
Q Consensus 183 ~~Ai~~~l~-~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~ 243 (1051)
.+.+..++. ..+++|.||||+|||+++.+++.++.... +.+|++++.-..+ .++..|+.
T Consensus 193 LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E~s~-~~l~~r~~ 252 (454)
T 2r6a_A 193 LDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLEMSA-QQLVMRML 252 (454)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESSSCH-HHHHHHHH
T ss_pred HHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCCCH-HHHHHHHH
Confidence 344444555 56899999999999999999999887642 6689998865433 67777764
No 370
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.68 E-value=0.04 Score=65.08 Aligned_cols=24 Identities=38% Similarity=0.671 Sum_probs=20.8
Q ss_pred CeEEEECCCCCChhHHHHHHHHHH
Q psy12659 831 GLTLVVGPPGTGKTDVAVQIISNL 854 (1051)
Q Consensus 831 ~~tlIqGPPGTGKT~ti~~iI~~l 854 (1051)
...+|.||||||||+++..+...+
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 679999999999999998776654
No 371
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.67 E-value=0.052 Score=61.53 Aligned_cols=24 Identities=38% Similarity=0.616 Sum_probs=19.9
Q ss_pred CCeEEEECCCCCChhHHHHHHHHH
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISN 853 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ 853 (1051)
..-.+|.||||||||+++..+...
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 467899999999999998877443
No 372
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.67 E-value=0.03 Score=65.41 Aligned_cols=39 Identities=38% Similarity=0.505 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHh---------------cC-CCeEEEEccCCCChHHHHHHHHHHH
Q psy12659 178 FTPTQIEAIRAG---------------MQ-PGLTLVVGPPGTGKTDVAVQIISNL 216 (1051)
Q Consensus 178 ln~~Q~~Ai~~~---------------l~-~~~~lI~GPPGTGKT~ti~~ii~~l 216 (1051)
=-+.|++.++.+ +. +.-.|+.||||||||.++.++...+
T Consensus 213 Gl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 213 GCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp TCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 345788777642 12 4558999999999999888776543
No 373
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.65 E-value=0.032 Score=61.37 Aligned_cols=25 Identities=36% Similarity=0.462 Sum_probs=20.7
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHH
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNL 854 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~l 854 (1051)
.+-.+|.||||||||+++..+...+
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred CceEEEECCCCccHHHHHHHHHHhC
Confidence 4569999999999999888776643
No 374
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.64 E-value=0.039 Score=55.03 Aligned_cols=33 Identities=27% Similarity=0.458 Sum_probs=24.7
Q ss_pred eEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEE
Q psy12659 194 LTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIV 228 (1051)
Q Consensus 194 ~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~ 228 (1051)
+.+|.||||+||||++..+...+-.. +..+.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~--g~~~~~~ 35 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQ--GINNKII 35 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTT--TCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc--CceEEEE
Confidence 57899999999999998887766433 4445544
No 375
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.63 E-value=0.066 Score=61.92 Aligned_cols=52 Identities=27% Similarity=0.466 Sum_probs=39.0
Q ss_pred CCCCHHHHHHHHHhcC--CCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEe
Q psy12659 814 FKLTFHEIEAIRAGMQ--PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVT 867 (1051)
Q Consensus 814 ~~Ln~~Q~~Ai~~~l~--~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a 867 (1051)
..+.+.+..++..++. .++++|.||+|+||||++..++..+-. ...+|++.-
T Consensus 149 Lg~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l~~--~~g~I~~~e 202 (418)
T 1p9r_A 149 LGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNS--SERNILTVE 202 (418)
T ss_dssp SCCCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHHCC--TTSCEEEEE
T ss_pred cCCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhcCC--CCCEEEEec
Confidence 3567778888887754 578999999999999999988775432 345666654
No 376
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.62 E-value=0.05 Score=57.44 Aligned_cols=37 Identities=24% Similarity=0.361 Sum_probs=31.8
Q ss_pred cCCCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEe
Q psy12659 190 MQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVT 229 (1051)
Q Consensus 190 l~~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a 229 (1051)
....++++.|+||+||||++..+...+. . +.+++++.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~-~--g~~v~vvd 48 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE-D--NYKVAYVN 48 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT-T--TSCEEEEE
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH-C--CCeEEEEe
Confidence 3467899999999999999999998877 5 78898886
No 377
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.60 E-value=0.084 Score=58.16 Aligned_cols=54 Identities=28% Similarity=0.274 Sum_probs=38.2
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeC---CHHHHHHHHHHHHhCCC
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTH---SNQALNQLFEKIISLDV 247 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~---SN~Avd~l~~rl~~~~~ 247 (1051)
+.+.+|.||+|+||||++..+...+... +.+|+++.. .+.|.+++.......++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~--g~~v~l~~~D~~r~~a~~ql~~~~~~~~v 154 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK--GFKVGLVGADVYRPAALEQLQQLGQQIGV 154 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT--TCCEEEEECCCSSSHHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEecCCCCHHHHHHHHHHhccCCe
Confidence 4467888999999999999998877665 678887754 25566655443333344
No 378
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=93.58 E-value=0.049 Score=63.27 Aligned_cols=25 Identities=48% Similarity=0.788 Sum_probs=20.5
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHH
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNL 216 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l 216 (1051)
+.-.|+.||||||||+++..+...+
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHh
Confidence 3568999999999999998776553
No 379
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.58 E-value=0.037 Score=62.27 Aligned_cols=24 Identities=38% Similarity=0.630 Sum_probs=20.2
Q ss_pred CeEEEECCCCCChhHHHHHHHHHH
Q psy12659 831 GLTLVVGPPGTGKTDVAVQIISNL 854 (1051)
Q Consensus 831 ~~tlIqGPPGTGKT~ti~~iI~~l 854 (1051)
.-.++.||||||||+++..+...+
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh
Confidence 448899999999999998777654
No 380
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.57 E-value=0.052 Score=58.71 Aligned_cols=39 Identities=21% Similarity=0.295 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcC---CCeEEEEccCCCChHHHHHHHHHHHHH
Q psy12659 180 PTQIEAIRAGMQ---PGLTLVVGPPGTGKTDVAVQIISNLYH 218 (1051)
Q Consensus 180 ~~Q~~Ai~~~l~---~~~~lI~GPPGTGKT~ti~~ii~~l~~ 218 (1051)
+...+.+...+. .+..+|.||||||||+++..+...+..
T Consensus 27 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~ 68 (323)
T 1sxj_B 27 KETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLG 68 (323)
T ss_dssp THHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcC
Confidence 345555555442 233899999999999999999888754
No 381
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=93.57 E-value=0.16 Score=63.23 Aligned_cols=82 Identities=15% Similarity=0.080 Sum_probs=59.5
Q ss_pred CCCCCCCHHHHHHHHHhc----CCCeEEEEccCCCChHHHHHHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHHhCCC
Q psy12659 173 KNTIPFTPTQIEAIRAGM----QPGLTLVVGPPGTGKTDVAVQIISNLYHN-FPHQRTLIVTHSNQALNQLFEKIISLDV 247 (1051)
Q Consensus 173 ~~~~~ln~~Q~~Ai~~~l----~~~~~lI~GPPGTGKT~ti~~ii~~l~~~-~p~~riLv~a~SN~Avd~l~~rl~~~~~ 247 (1051)
.....|-+.|.++|..++ ...-.++.-+.|+|||-++..++..++.. ....++||+||+. .+.+-.+.+.+..
T Consensus 232 ~~~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~s-ll~qW~~E~~~~~- 309 (800)
T 3mwy_W 232 IKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLS-TMPAWLDTFEKWA- 309 (800)
T ss_dssp CCSSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTT-THHHHHHHHHHHS-
T ss_pred cCCCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEECch-HHHHHHHHHHHHC-
Confidence 344688899999997654 45567899999999999999998877643 3457899999955 4677777776643
Q ss_pred CCCcEEEec
Q psy12659 248 DERHLLRLG 256 (1051)
Q Consensus 248 ~~~~lvRlG 256 (1051)
+...++.+.
T Consensus 310 p~~~v~~~~ 318 (800)
T 3mwy_W 310 PDLNCICYM 318 (800)
T ss_dssp TTCCEEECC
T ss_pred CCceEEEEe
Confidence 233444443
No 382
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.56 E-value=0.059 Score=60.05 Aligned_cols=37 Identities=24% Similarity=0.326 Sum_probs=30.7
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEec
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTH 868 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~ 868 (1051)
+.+.+|.||+|+||||++..+...+-. .+.+|+++..
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~--~g~kVllid~ 141 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAE--LGYKVLIAAA 141 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHH--TTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeC
Confidence 467889999999999999999887665 5778888753
No 383
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.54 E-value=0.032 Score=59.03 Aligned_cols=21 Identities=48% Similarity=0.887 Sum_probs=18.2
Q ss_pred EEEEccCCCChHHHHHHHHHH
Q psy12659 195 TLVVGPPGTGKTDVAVQIISN 215 (1051)
Q Consensus 195 ~lI~GPPGTGKT~ti~~ii~~ 215 (1051)
.+|.||||||||+++..+...
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999998877543
No 384
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.52 E-value=0.072 Score=61.71 Aligned_cols=59 Identities=19% Similarity=0.237 Sum_probs=44.6
Q ss_pred HHHHHHhcC-CCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHH
Q psy12659 821 IEAIRAGMQ-PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKII 881 (1051)
Q Consensus 821 ~~Ai~~~l~-~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~ 881 (1051)
.+.+..++. +.+++|.||||+|||+++.++..+.... .+.+|++++--.. ..++..++.
T Consensus 190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE~~-~~~l~~R~~ 249 (444)
T 2q6t_A 190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLEMP-AAQLTLRMM 249 (444)
T ss_dssp HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSSC-HHHHHHHHH
T ss_pred hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECCCC-HHHHHHHHH
Confidence 444445666 6799999999999999999999988762 3678998886443 446777764
No 385
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=93.51 E-value=0.066 Score=58.39 Aligned_cols=36 Identities=31% Similarity=0.489 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCCeEEEEccCCCChHHHHHHHHHHH
Q psy12659 180 PTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNL 216 (1051)
Q Consensus 180 ~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~~ii~~l 216 (1051)
+.+.+.+.. +..++.+|.||+|+|||+++.++...+
T Consensus 19 ~~el~~L~~-l~~~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 19 EKEIEKLKG-LRAPITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp HHHHHHHHH-TCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHH-hcCCcEEEECCCCCCHHHHHHHHHHhc
Confidence 467777777 766899999999999999999887654
No 386
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=93.50 E-value=0.053 Score=60.83 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=23.1
Q ss_pred CCeEEE--ECCCCCChhHHHHHHHHHHHH
Q psy12659 830 PGLTLV--VGPPGTGKTDVAVQIISNLYH 856 (1051)
Q Consensus 830 ~~~tlI--qGPPGTGKT~ti~~iI~~ll~ 856 (1051)
++..+| .||||||||+++..+...+-.
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 567888 999999999999988877654
No 387
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=93.50 E-value=0.04 Score=61.89 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=23.4
Q ss_pred CCCeEEE--EccCCCChHHHHHHHHHHHHH
Q psy12659 191 QPGLTLV--VGPPGTGKTDVAVQIISNLYH 218 (1051)
Q Consensus 191 ~~~~~lI--~GPPGTGKT~ti~~ii~~l~~ 218 (1051)
.++..+| .||||||||+++..+...+-.
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 3557888 999999999999998877654
No 388
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.49 E-value=0.06 Score=60.00 Aligned_cols=36 Identities=25% Similarity=0.336 Sum_probs=30.0
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEe
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVT 229 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a 229 (1051)
+.+.+|.||+|+||||++..+...+... +.+|+++.
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~--g~kVllid 140 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAEL--GYKVLIAA 140 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHT--TCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEe
Confidence 5578899999999999999998877655 67888774
No 389
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.48 E-value=0.088 Score=56.70 Aligned_cols=52 Identities=15% Similarity=0.312 Sum_probs=34.4
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHHHHcC--------CCCeEEEEeCCHHHHHHHHHHHHh
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNLYHNF--------PHQRTLIVTHSNQALNQLFEKIIS 244 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l~~~~--------p~~riLv~a~SN~Avd~l~~rl~~ 244 (1051)
..+++|.||||+||||++..++..+.... .+.+++.++.-+. .+.+..++..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~-~~~~~~r~~~ 89 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP-PTAIHHRLHA 89 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC-HHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCC-HHHHHHHHHH
Confidence 56899999999999999999988554210 1346666654432 2455455543
No 390
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.47 E-value=0.054 Score=60.71 Aligned_cols=56 Identities=18% Similarity=0.192 Sum_probs=38.5
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHHHHhC----CCCcEEEEecchH-HHHHHHHHHHhcCC
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNLYHNF----PHQRTLIVTHSNQ-ALNQLFEKIISLDV 885 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ll~~~----~~~riLV~a~SN~-Ald~l~e~l~~~~~ 885 (1051)
+.+++|.||||+|||+++.+++.+..... .+.+++.++..+. ..+.+.+.+...++
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~ 182 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNV 182 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCC
Confidence 56899999999999999999988754311 2567777776543 24455555554444
No 391
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=93.46 E-value=0.05 Score=63.15 Aligned_cols=25 Identities=36% Similarity=0.535 Sum_probs=20.8
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHH
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNL 854 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~l 854 (1051)
+.-.++.||||||||+++..+...+
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 3568999999999999988776654
No 392
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.44 E-value=0.088 Score=60.98 Aligned_cols=59 Identities=19% Similarity=0.218 Sum_probs=44.2
Q ss_pred HHHHHHhcC-CCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHH
Q psy12659 183 IEAIRAGMQ-PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKII 243 (1051)
Q Consensus 183 ~~Ai~~~l~-~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~ 243 (1051)
.+.+..++. ..+++|.||||+|||+++.+++.+..... +.++++++--.. ..++..|+.
T Consensus 190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE~~-~~~l~~R~~ 249 (444)
T 2q6t_A 190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLEMP-AAQLTLRMM 249 (444)
T ss_dssp HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESSSC-HHHHHHHHH
T ss_pred hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECCCC-HHHHHHHHH
Confidence 344445565 56899999999999999999999887632 678998887543 356777764
No 393
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.39 E-value=0.038 Score=54.53 Aligned_cols=22 Identities=36% Similarity=0.671 Sum_probs=19.0
Q ss_pred CeEEEECCCCCChhHHHHHHHH
Q psy12659 831 GLTLVVGPPGTGKTDVAVQIIS 852 (1051)
Q Consensus 831 ~~tlIqGPPGTGKT~ti~~iI~ 852 (1051)
.+.+|.||||+||||++..+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3678999999999999887765
No 394
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.39 E-value=0.05 Score=54.41 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=20.7
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHH
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNL 216 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l 216 (1051)
....+|.||||+||||++..+...+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999988886654
No 395
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.37 E-value=0.055 Score=59.79 Aligned_cols=40 Identities=20% Similarity=0.324 Sum_probs=30.3
Q ss_pred CHHHHHHHHHhc-C---CCeEEEECCCCCChhHHHHHHHHHHHH
Q psy12659 817 TFHEIEAIRAGM-Q---PGLTLVVGPPGTGKTDVAVQIISNLYH 856 (1051)
Q Consensus 817 n~~Q~~Ai~~~l-~---~~~tlIqGPPGTGKT~ti~~iI~~ll~ 856 (1051)
+....+++..++ . .+..+|.||||||||+++..+...++.
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~ 62 (354)
T 1sxj_E 19 NEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFG 62 (354)
T ss_dssp CHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSC
T ss_pred CHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcC
Confidence 455667777766 3 123899999999999999888776654
No 396
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.34 E-value=0.04 Score=53.58 Aligned_cols=20 Identities=35% Similarity=0.718 Sum_probs=17.7
Q ss_pred CeEEEECCCCCChhHHHHHH
Q psy12659 831 GLTLVVGPPGTGKTDVAVQI 850 (1051)
Q Consensus 831 ~~tlIqGPPGTGKT~ti~~i 850 (1051)
.+.+|.||||+||||++..+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36789999999999998877
No 397
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.32 E-value=0.072 Score=58.23 Aligned_cols=24 Identities=38% Similarity=0.648 Sum_probs=20.3
Q ss_pred CCeEEEEccCCCChHHHHHHHHHH
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISN 215 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~ 215 (1051)
+.+.+|.||||+||||++..+...
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999999888654
No 398
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.32 E-value=0.043 Score=54.95 Aligned_cols=25 Identities=40% Similarity=0.736 Sum_probs=20.9
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHH
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNL 216 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l 216 (1051)
+.+.+|.||||+||||++..+...+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4468899999999999998887654
No 399
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.30 E-value=0.07 Score=53.14 Aligned_cols=33 Identities=27% Similarity=0.448 Sum_probs=25.2
Q ss_pred eEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEE
Q psy12659 832 LTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIV 866 (1051)
Q Consensus 832 ~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~ 866 (1051)
+.+|.||||+||||++..+...+-. .+..+.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~--~g~~~~~~ 35 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDN--QGINNKII 35 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT--TTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh--cCceEEEE
Confidence 5789999999999999888776543 35555555
No 400
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=93.30 E-value=0.062 Score=59.71 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=24.3
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHHHHc
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNLYHN 219 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l~~~ 219 (1051)
+...|+.||||||||+++..+...+...
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence 4569999999999999999998888743
No 401
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.29 E-value=0.037 Score=58.49 Aligned_cols=21 Identities=48% Similarity=0.887 Sum_probs=18.0
Q ss_pred EEEECCCCCChhHHHHHHHHH
Q psy12659 833 TLVVGPPGTGKTDVAVQIISN 853 (1051)
Q Consensus 833 tlIqGPPGTGKT~ti~~iI~~ 853 (1051)
.+|.||||||||+++..+...
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999988766553
No 402
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.28 E-value=0.067 Score=62.14 Aligned_cols=46 Identities=28% Similarity=0.416 Sum_probs=35.6
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHHHHhCC-CCcEEEEec---chHHHHHHH
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNLYHNFP-HQRTLIVTH---SNQALNQLF 877 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~-~~riLV~a~---SN~Ald~l~ 877 (1051)
+.+.+|.|++|+|||||++++...+-. . +++|++++- ...|.+++.
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~--~~G~kVllvd~D~~r~~a~~ql~ 149 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLRE--KHKKKVLVVSADVYRPAAIKQLE 149 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHH--TSCCCEEEEECCCSSTTHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--hcCCeEEEEecCCCCccHHHHHH
Confidence 356778899999999999999998877 5 788888754 345666543
No 403
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=93.28 E-value=0.18 Score=57.67 Aligned_cols=70 Identities=11% Similarity=0.115 Sum_probs=57.8
Q ss_pred CCCCCHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHHh
Q psy12659 813 PFKLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIIS 882 (1051)
Q Consensus 813 ~~~Ln~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~~ 882 (1051)
|+.|++-|+..+.........+|..|-+.|||++++.++.......++.+|+++|+|...+..+++++..
T Consensus 161 p~~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~ 230 (385)
T 2o0j_A 161 KVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQ 230 (385)
T ss_dssp ECCCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 4688999999988654567899999999999999998887655445788999999999888878777754
No 404
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.27 E-value=0.066 Score=59.98 Aligned_cols=56 Identities=18% Similarity=0.192 Sum_probs=38.7
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHHHHcC----CCCeEEEEeCCHH-HHHHHHHHHHhCCC
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNLYHNF----PHQRTLIVTHSNQ-ALNQLFEKIISLDV 247 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l~~~~----p~~riLv~a~SN~-Avd~l~~rl~~~~~ 247 (1051)
..+++|.||||+|||+++.+++.+..... .+.+++.++-.+. ..+.+..+....++
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~ 182 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNV 182 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCC
Confidence 45899999999999999999987654311 2567777776552 24556666555544
No 405
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.25 E-value=0.049 Score=55.26 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=21.5
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHHH
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNLY 217 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l~ 217 (1051)
+.+.+|.||||+||||++..+...+-
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 44688999999999999988876553
No 406
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.25 E-value=0.046 Score=54.59 Aligned_cols=25 Identities=32% Similarity=0.659 Sum_probs=20.3
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHH
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNL 216 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l 216 (1051)
+.+.+|.||||+||||++..+...+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4467899999999999988776543
No 407
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=93.24 E-value=0.12 Score=61.50 Aligned_cols=64 Identities=19% Similarity=0.339 Sum_probs=48.3
Q ss_pred CCCHHHHHHHHH---hc-CCCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHHhc
Q psy12659 815 KLTFHEIEAIRA---GM-QPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISL 883 (1051)
Q Consensus 815 ~Ln~~Q~~Ai~~---~l-~~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~~~ 883 (1051)
.+-+.|.+++.. ++ .+.-.+|+.|+|||||-.. ++..+. .+.+|+|+++|+.-.+++.+.+...
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~--l~p~l~---~~~~v~i~~pt~~l~~q~~~~~~~l 70 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFS--LLVSLE---VKPKVLFVVRTHNEFYPIYRDLTKI 70 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHH--HHHHHH---HCSEEEEEESSGGGHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHH--HHHHHh---CCCeEEEEcCCHHHHHHHHHHHHHH
Confidence 455789985554 33 4778999999999996543 444333 3679999999999999998887665
No 408
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.19 E-value=0.061 Score=58.14 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=27.2
Q ss_pred HHHHHHHhcC---CCeEEEECCCCCChhHHHHHHHHHHHH
Q psy12659 820 EIEAIRAGMQ---PGLTLVVGPPGTGKTDVAVQIISNLYH 856 (1051)
Q Consensus 820 Q~~Ai~~~l~---~~~tlIqGPPGTGKT~ti~~iI~~ll~ 856 (1051)
..+.+...+. .+..+|.||||||||+++..+...+..
T Consensus 29 ~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~ 68 (323)
T 1sxj_B 29 TIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLG 68 (323)
T ss_dssp HHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcC
Confidence 4444554443 233899999999999999988888754
No 409
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.18 E-value=0.082 Score=58.62 Aligned_cols=56 Identities=16% Similarity=0.195 Sum_probs=38.0
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHHHHcC----CCCeEEEEeCCHH-HHHHHHHHHHhCCC
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNLYHNF----PHQRTLIVTHSNQ-ALNQLFEKIISLDV 247 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l~~~~----p~~riLv~a~SN~-Avd~l~~rl~~~~~ 247 (1051)
..+++|.||||+|||+++.+++.+..... .+.+++.++-.+. -.+++..++...++
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~ 167 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGL 167 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTC
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCC
Confidence 56899999999999999999987654221 1467777765442 13455555555544
No 410
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=93.17 E-value=0.039 Score=59.93 Aligned_cols=21 Identities=43% Similarity=0.686 Sum_probs=17.8
Q ss_pred eEEEECCCCCChhHHHHHHHH
Q psy12659 832 LTLVVGPPGTGKTDVAVQIIS 852 (1051)
Q Consensus 832 ~tlIqGPPGTGKT~ti~~iI~ 852 (1051)
-.++.||||||||+++..+..
T Consensus 46 GvlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 389999999999998876654
No 411
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=93.11 E-value=0.24 Score=56.73 Aligned_cols=68 Identities=12% Similarity=0.142 Sum_probs=56.1
Q ss_pred CCCCHHHHHHHHHhcCCCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHH
Q psy12659 176 IPFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKII 243 (1051)
Q Consensus 176 ~~ln~~Q~~Ai~~~l~~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~ 243 (1051)
+.|++-|+..+.........+|..|-+.|||++++.++.......|+.+|+++|+|-..+..+++++.
T Consensus 162 ~~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~ 229 (385)
T 2o0j_A 162 VQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTK 229 (385)
T ss_dssp CCCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHH
Confidence 57899999998765456789999999999999999887665555678899999999987777777664
No 412
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.07 E-value=0.051 Score=54.26 Aligned_cols=24 Identities=33% Similarity=0.686 Sum_probs=20.1
Q ss_pred CCeEEEECCCCCChhHHHHHHHHH
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISN 853 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ 853 (1051)
+.+.+|.||||+||||++..+...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 456889999999999998877654
No 413
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.07 E-value=0.078 Score=59.57 Aligned_cols=37 Identities=19% Similarity=0.277 Sum_probs=31.5
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEec
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTH 868 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~ 868 (1051)
.....|.|+||+|||+++.+++..+.. .+++|+|+.-
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~--~g~kV~vi~~ 115 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIE--RGHRVAVLAV 115 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHh--CCCceEEEec
Confidence 347889999999999999999998876 6788888764
No 414
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.06 E-value=0.053 Score=55.00 Aligned_cols=27 Identities=22% Similarity=0.214 Sum_probs=22.2
Q ss_pred CCCeEEEECCCCCChhHHHHHHHHHHH
Q psy12659 829 QPGLTLVVGPPGTGKTDVAVQIISNLY 855 (1051)
Q Consensus 829 ~~~~tlIqGPPGTGKT~ti~~iI~~ll 855 (1051)
.+.+.+|.||||+||||++..+...+-
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 345788999999999999988877653
No 415
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.04 E-value=0.059 Score=53.82 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=20.7
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHH
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNL 854 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~l 854 (1051)
....+|.||||+||||++..+...+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4568899999999999998876654
No 416
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=93.04 E-value=0.08 Score=57.75 Aligned_cols=36 Identities=33% Similarity=0.480 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHHHH
Q psy12659 818 FHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNL 854 (1051)
Q Consensus 818 ~~Q~~Ai~~~l~~~~tlIqGPPGTGKT~ti~~iI~~l 854 (1051)
+.+.+.+.. +..++.+|.||+|+|||+++.++...+
T Consensus 19 ~~el~~L~~-l~~~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 19 EKEIEKLKG-LRAPITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp HHHHHHHHH-TCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHH-hcCCcEEEECCCCCCHHHHHHHHHHhc
Confidence 456677777 766899999999999999999887764
No 417
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.01 E-value=0.065 Score=53.47 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=20.8
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHH
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNL 216 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l 216 (1051)
..+.+|.||||+||||++..+...+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 5578999999999999888776544
No 418
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.99 E-value=0.092 Score=52.71 Aligned_cols=35 Identities=26% Similarity=0.412 Sum_probs=27.1
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEE
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIV 228 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~ 228 (1051)
+.+.+|.|+||+||||++..+...+-.. +.++.++
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~--~~~~~~~ 47 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKE--GYRVEVL 47 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhc--CCeEEEe
Confidence 4568899999999999998887776544 5566554
No 419
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.94 E-value=0.094 Score=52.60 Aligned_cols=32 Identities=16% Similarity=0.283 Sum_probs=23.7
Q ss_pred eEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEE
Q psy12659 194 LTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLI 227 (1051)
Q Consensus 194 ~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv 227 (1051)
+..|.||||+||||++..+...+-.. +..++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~--g~~v~~ 33 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKR--GKKVIL 33 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHC--CC-EEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEE
Confidence 46899999999999999887766543 445543
No 420
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.92 E-value=0.093 Score=52.68 Aligned_cols=36 Identities=25% Similarity=0.387 Sum_probs=27.9
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEe
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVT 867 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a 867 (1051)
+.+.+|.|+||+||||++..+...+-. .+.++.++.
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~--~~~~~~~~~ 48 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQK--EGYRVEVLD 48 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh--cCCeEEEee
Confidence 457889999999999999888777655 456665553
No 421
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.90 E-value=0.089 Score=56.34 Aligned_cols=36 Identities=22% Similarity=0.402 Sum_probs=26.8
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEe
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVT 229 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a 229 (1051)
..+.+|.|+||+||||++..+...+-.. +..+++++
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~--g~~~i~~~ 39 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKN--NIDVIVLG 39 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEC
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhC--CCEEEEEC
Confidence 3468899999999999999887776543 54555443
No 422
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=92.89 E-value=0.074 Score=59.11 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=23.9
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHHHH
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNLYH 856 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ll~ 856 (1051)
+...++.||||||||+++..+...+..
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 456999999999999999999988875
No 423
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=92.85 E-value=0.046 Score=58.81 Aligned_cols=21 Identities=48% Similarity=0.887 Sum_probs=18.2
Q ss_pred EEEEccCCCChHHHHHHHHHH
Q psy12659 195 TLVVGPPGTGKTDVAVQIISN 215 (1051)
Q Consensus 195 ~lI~GPPGTGKT~ti~~ii~~ 215 (1051)
.+|.||||||||+++..+...
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 899999999999998877553
No 424
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.82 E-value=0.052 Score=54.35 Aligned_cols=25 Identities=40% Similarity=0.736 Sum_probs=21.1
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHH
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNL 854 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~l 854 (1051)
+.+.+|.||||+||||++..+...+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578899999999999998877654
No 425
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.82 E-value=0.1 Score=52.29 Aligned_cols=33 Identities=15% Similarity=0.245 Sum_probs=24.5
Q ss_pred eEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEE
Q psy12659 832 LTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIV 866 (1051)
Q Consensus 832 ~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~ 866 (1051)
+.+|.||||+||||++..+...+-. .+-.++.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~--~g~~v~~~ 34 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK--RGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH--CCC-EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEe
Confidence 4689999999999999988776644 45555543
No 426
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.81 E-value=0.086 Score=59.24 Aligned_cols=37 Identities=19% Similarity=0.288 Sum_probs=31.3
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeC
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTH 230 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~ 230 (1051)
.....|.|+||+||||++..+...+... +.+|+++.-
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~--g~kV~vi~~ 115 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIER--GHRVAVLAV 115 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhC--CCceEEEec
Confidence 4468899999999999999999988765 788888764
No 427
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=92.79 E-value=0.067 Score=58.86 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=19.7
Q ss_pred CCeEEEECCCCCChhHHHHHHHHH
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISN 853 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ 853 (1051)
+...+|.||||||||+++..+-..
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEEEECCCCchHHHHHHHHHHh
Confidence 667899999999999887766543
No 428
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=92.72 E-value=0.054 Score=54.31 Aligned_cols=23 Identities=30% Similarity=0.637 Sum_probs=19.3
Q ss_pred CCeEEEEccCCCChHHHHHHHHH
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIIS 214 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~ 214 (1051)
..+..|.||||+||||++..+..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHh
Confidence 45789999999999998877654
No 429
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=92.69 E-value=0.052 Score=59.84 Aligned_cols=56 Identities=16% Similarity=0.201 Sum_probs=38.2
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHHHHh----------CCC----CcEEEEecchHH-HHHHHHHHHhcCC
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNLYHN----------FPH----QRTLIVTHSNQA-LNQLFEKIISLDV 885 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ll~~----------~~~----~riLV~a~SN~A-ld~l~e~l~~~~~ 885 (1051)
..+++|.||||+|||+++.+++.+.... ..+ .+++.++--+.. .+.+.+++...++
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~ 168 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGI 168 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCC
Confidence 5789999999999999999998874321 122 577777755431 4555555555444
No 430
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.64 E-value=0.073 Score=54.30 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=21.1
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHH
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNL 216 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l 216 (1051)
....+|.||||+||||++..+...+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4478999999999999988887655
No 431
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=92.64 E-value=0.27 Score=59.72 Aligned_cols=68 Identities=18% Similarity=0.242 Sum_probs=54.8
Q ss_pred CCCHHHHHHHHHhc---------CCCeEEEECCCCCChhHHHHHHHHHHHHhCC-----CCcEEEEecchHHHHHHHHHH
Q psy12659 815 KLTFHEIEAIRAGM---------QPGLTLVVGPPGTGKTDVAVQIISNLYHNFP-----HQRTLIVTHSNQALNQLFEKI 880 (1051)
Q Consensus 815 ~Ln~~Q~~Ai~~~l---------~~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~-----~~riLV~a~SN~Ald~l~e~l 880 (1051)
.|-+.|+++|.... ...-.++.-+.|+|||-++..+|..++...+ .+++||++|+ ..+.+..+.+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 67789999998864 2455788999999999999999999887543 3579999998 5677777777
Q ss_pred Hhc
Q psy12659 881 ISL 883 (1051)
Q Consensus 881 ~~~ 883 (1051)
.+.
T Consensus 134 ~~~ 136 (644)
T 1z3i_X 134 GKW 136 (644)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 432
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=92.64 E-value=0.066 Score=58.37 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=20.2
Q ss_pred CeEEEEccCCCChHHHHHHHHHH
Q psy12659 193 GLTLVVGPPGTGKTDVAVQIISN 215 (1051)
Q Consensus 193 ~~~lI~GPPGTGKT~ti~~ii~~ 215 (1051)
...++.||||||||.++..+...
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999988764
No 433
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.60 E-value=0.063 Score=52.92 Aligned_cols=22 Identities=32% Similarity=0.597 Sum_probs=18.2
Q ss_pred CeEEEEccCCCChHHHHHHHHH
Q psy12659 193 GLTLVVGPPGTGKTDVAVQIIS 214 (1051)
Q Consensus 193 ~~~lI~GPPGTGKT~ti~~ii~ 214 (1051)
.+..|.||||+||||++..+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999998766644
No 434
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.59 E-value=0.11 Score=55.70 Aligned_cols=35 Identities=20% Similarity=0.379 Sum_probs=26.4
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEE
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIV 866 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~ 866 (1051)
..+.+|.||||+||||++..+...|-. .+..++++
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~--~g~~~i~~ 38 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSK--NNIDVIVL 38 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHh--CCCEEEEE
Confidence 357899999999999999988877654 34455533
No 435
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.57 E-value=0.075 Score=52.99 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=21.2
Q ss_pred CCCeEEEECCCCCChhHHHHHHHHHH
Q psy12659 829 QPGLTLVVGPPGTGKTDVAVQIISNL 854 (1051)
Q Consensus 829 ~~~~tlIqGPPGTGKT~ti~~iI~~l 854 (1051)
.....+|.||||+||||++..+...+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 35678999999999999988776553
No 436
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.57 E-value=0.079 Score=62.24 Aligned_cols=55 Identities=11% Similarity=0.114 Sum_probs=41.9
Q ss_pred HhcC-CCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHh
Q psy12659 188 AGMQ-PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIIS 244 (1051)
Q Consensus 188 ~~l~-~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~ 244 (1051)
.++. ..+++|.||||+|||+++.+++.++.... +.++++++--.. ..++..|+..
T Consensus 237 gGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~-g~~vl~~s~E~s-~~~l~~r~~~ 292 (503)
T 1q57_A 237 LGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAM-GKKVGLAMLEES-VEETAEDLIG 292 (503)
T ss_dssp CCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTS-CCCEEEEESSSC-HHHHHHHHHH
T ss_pred cccCCCeEEEEeecCCCCchHHHHHHHHHHHHhc-CCcEEEEeccCC-HHHHHHHHHH
Confidence 3444 56899999999999999999998887542 678998886543 3577777643
No 437
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.56 E-value=0.074 Score=53.36 Aligned_cols=26 Identities=31% Similarity=0.630 Sum_probs=21.2
Q ss_pred CCCeEEEEccCCCChHHHHHHHHHHH
Q psy12659 191 QPGLTLVVGPPGTGKTDVAVQIISNL 216 (1051)
Q Consensus 191 ~~~~~lI~GPPGTGKT~ti~~ii~~l 216 (1051)
.+.+.+|.||||+||||++..+...+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 35578999999999999888876544
No 438
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.55 E-value=0.066 Score=57.30 Aligned_cols=23 Identities=48% Similarity=0.772 Sum_probs=19.7
Q ss_pred eEEEEccCCCChHHHHHHHHHHH
Q psy12659 194 LTLVVGPPGTGKTDVAVQIISNL 216 (1051)
Q Consensus 194 ~~lI~GPPGTGKT~ti~~ii~~l 216 (1051)
+.+|.|||||||||++..+...+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 57899999999999998886643
No 439
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=92.54 E-value=0.055 Score=58.25 Aligned_cols=21 Identities=48% Similarity=0.887 Sum_probs=18.0
Q ss_pred EEEECCCCCChhHHHHHHHHH
Q psy12659 833 TLVVGPPGTGKTDVAVQIISN 853 (1051)
Q Consensus 833 tlIqGPPGTGKT~ti~~iI~~ 853 (1051)
.+|.||||||||+++..+...
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 899999999999988766553
No 440
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=92.51 E-value=0.051 Score=64.27 Aligned_cols=34 Identities=21% Similarity=0.342 Sum_probs=24.6
Q ss_pred HHHHHHHh-cCCCeEEEEccCCCChHHHHHHHHHH
Q psy12659 182 QIEAIRAG-MQPGLTLVVGPPGTGKTDVAVQIISN 215 (1051)
Q Consensus 182 Q~~Ai~~~-l~~~~~lI~GPPGTGKT~ti~~ii~~ 215 (1051)
-.+++..+ ...+-.++.||||||||+++..+...
T Consensus 30 ~i~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 30 AIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp HHHHHHHHHHHTCEEEEECCSSSSHHHHHHHGGGG
T ss_pred HHHHHHHHHhcCCeeEeecCchHHHHHHHHHHHHH
Confidence 33444433 45678899999999999988877553
No 441
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.51 E-value=0.091 Score=55.43 Aligned_cols=37 Identities=24% Similarity=0.335 Sum_probs=31.1
Q ss_pred cCCCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEe
Q psy12659 828 MQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVT 867 (1051)
Q Consensus 828 l~~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a 867 (1051)
....++++.|+||+||||++.++...+. .+++|+|+.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~---~g~~v~vvd 48 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE---DNYKVAYVN 48 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT---TTSCEEEEE
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH---CCCeEEEEe
Confidence 3457899999999999999999988765 477888886
No 442
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.50 E-value=0.075 Score=53.12 Aligned_cols=24 Identities=29% Similarity=0.613 Sum_probs=19.5
Q ss_pred CeEEEEccCCCChHHHHHHHHHHH
Q psy12659 193 GLTLVVGPPGTGKTDVAVQIISNL 216 (1051)
Q Consensus 193 ~~~lI~GPPGTGKT~ti~~ii~~l 216 (1051)
.+.+|.||||+||||++..+...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 457899999999999887775543
No 443
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=92.48 E-value=0.094 Score=57.70 Aligned_cols=25 Identities=32% Similarity=0.380 Sum_probs=20.2
Q ss_pred CCCeEEEEccCCCChHHHHHHHHHH
Q psy12659 191 QPGLTLVVGPPGTGKTDVAVQIISN 215 (1051)
Q Consensus 191 ~~~~~lI~GPPGTGKT~ti~~ii~~ 215 (1051)
.....+|.||||||||+++..+-..
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEECCCCchHHHHHHHHHHh
Confidence 4667899999999999987776543
No 444
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.48 E-value=0.13 Score=52.18 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=31.6
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecch
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSN 870 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~SN 870 (1051)
-++..|.||+|+|||+++..++..+-. .+.++-++.+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~--~g~~v~~i~~~~ 44 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA--RGIRPGLIKHTH 44 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEEEECC
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc--cCCceeEEeeCC
Confidence 467899999999999999999988665 566777776644
No 445
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=92.47 E-value=0.057 Score=63.86 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=21.3
Q ss_pred cCCCeEEEECCCCCChhHHHHHHHHH
Q psy12659 828 MQPGLTLVVGPPGTGKTDVAVQIISN 853 (1051)
Q Consensus 828 l~~~~tlIqGPPGTGKT~ti~~iI~~ 853 (1051)
..++-.++.||||||||+++..+...
T Consensus 39 ~~~~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 39 LSGESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp HHTCEEEEECCSSSSHHHHHHHGGGG
T ss_pred hcCCeeEeecCchHHHHHHHHHHHHH
Confidence 44788999999999999988766543
No 446
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.40 E-value=0.079 Score=53.25 Aligned_cols=25 Identities=20% Similarity=0.549 Sum_probs=20.8
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHH
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNL 216 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l 216 (1051)
+.+.+|.||||+||||++..+...+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999888776644
No 447
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=92.39 E-value=0.29 Score=60.92 Aligned_cols=70 Identities=17% Similarity=0.117 Sum_probs=56.0
Q ss_pred CCCCHHHHHHHHHhc----CCCeEEEECCCCCChhHHHHHHHHHHHH-hCCCCcEEEEecchHHHHHHHHHHHhcC
Q psy12659 814 FKLTFHEIEAIRAGM----QPGLTLVVGPPGTGKTDVAVQIISNLYH-NFPHQRTLIVTHSNQALNQLFEKIISLD 884 (1051)
Q Consensus 814 ~~Ln~~Q~~Ai~~~l----~~~~tlIqGPPGTGKT~ti~~iI~~ll~-~~~~~riLV~a~SN~Ald~l~e~l~~~~ 884 (1051)
..|-+.|.++|..++ .+.-.++.-|.|+|||-++..++..++. .....++||++| ...+.+..+.+.+..
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~ 309 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWA 309 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHS
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHC
Confidence 467889999998665 4667899999999999999999988764 334678999999 455778888887653
No 448
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.38 E-value=0.081 Score=53.97 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=21.1
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHH
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNL 854 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~l 854 (1051)
....+|.||||+||||++..+...+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4578999999999999988877654
No 449
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.38 E-value=0.077 Score=52.93 Aligned_cols=23 Identities=35% Similarity=0.720 Sum_probs=19.2
Q ss_pred eEEEEccCCCChHHHHHHHHHHH
Q psy12659 194 LTLVVGPPGTGKTDVAVQIISNL 216 (1051)
Q Consensus 194 ~~lI~GPPGTGKT~ti~~ii~~l 216 (1051)
+.+|.||||+||||++..+...+
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999988876543
No 450
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.34 E-value=0.076 Score=52.79 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=18.9
Q ss_pred eEEEEccCCCChHHHHHHHHHHH
Q psy12659 194 LTLVVGPPGTGKTDVAVQIISNL 216 (1051)
Q Consensus 194 ~~lI~GPPGTGKT~ti~~ii~~l 216 (1051)
..+|.||||+||||++..+...+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 47889999999999888776543
No 451
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.33 E-value=0.079 Score=53.94 Aligned_cols=25 Identities=36% Similarity=0.624 Sum_probs=20.9
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHH
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNL 216 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l 216 (1051)
..+.+|.||||+||||++..+...+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999988876654
No 452
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.32 E-value=0.07 Score=52.59 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=18.5
Q ss_pred CCeEEEECCCCCChhHHHHHHHH
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIIS 852 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~ 852 (1051)
+.+..|.||||+||||++..+..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999998765544
No 453
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=92.27 E-value=0.11 Score=56.77 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=20.2
Q ss_pred CeEEEECCCCCChhHHHHHHHHH
Q psy12659 831 GLTLVVGPPGTGKTDVAVQIISN 853 (1051)
Q Consensus 831 ~~tlIqGPPGTGKT~ti~~iI~~ 853 (1051)
.-.++.||||||||.++..+...
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHhh
Confidence 36999999999999999988765
No 454
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.23 E-value=0.072 Score=54.59 Aligned_cols=26 Identities=27% Similarity=0.521 Sum_probs=21.7
Q ss_pred CCCeEEEEccCCCChHHHHHHHHHHH
Q psy12659 191 QPGLTLVVGPPGTGKTDVAVQIISNL 216 (1051)
Q Consensus 191 ~~~~~lI~GPPGTGKT~ti~~ii~~l 216 (1051)
.+.+.+|.||||+||||++..+...+
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 46678999999999999888876644
No 455
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.23 E-value=0.15 Score=53.86 Aligned_cols=37 Identities=11% Similarity=0.245 Sum_probs=33.3
Q ss_pred CeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCC
Q psy12659 193 GLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHS 231 (1051)
Q Consensus 193 ~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~S 231 (1051)
.+.++.||.|+||||.+..++.+.... +.+++++.|.
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~--g~kVli~k~~ 65 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFA--KQHAIVFKPC 65 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEec
Confidence 478899999999999999999998877 8899999875
No 456
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=92.21 E-value=0.11 Score=60.54 Aligned_cols=39 Identities=21% Similarity=0.447 Sum_probs=28.6
Q ss_pred HHHHHHHHHhc---CCCeEEEEccCCCChHHHHHHHHHHHHH
Q psy12659 180 PTQIEAIRAGM---QPGLTLVVGPPGTGKTDVAVQIISNLYH 218 (1051)
Q Consensus 180 ~~Q~~Ai~~~l---~~~~~lI~GPPGTGKT~ti~~ii~~l~~ 218 (1051)
+...+.+...+ ..+-.||.||||||||+++..+...+..
T Consensus 186 ~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 186 SKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp HHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 44555555544 3556799999999999999888777654
No 457
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.19 E-value=0.14 Score=51.06 Aligned_cols=25 Identities=32% Similarity=0.385 Sum_probs=20.6
Q ss_pred eEEEEccCCCChHHHHHHHHHHHHH
Q psy12659 194 LTLVVGPPGTGKTDVAVQIISNLYH 218 (1051)
Q Consensus 194 ~~lI~GPPGTGKT~ti~~ii~~l~~ 218 (1051)
+.+|.|+||+||||++..+...+-.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4679999999999998888776643
No 458
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.17 E-value=0.079 Score=56.67 Aligned_cols=23 Identities=48% Similarity=0.772 Sum_probs=19.9
Q ss_pred eEEEECCCCCChhHHHHHHHHHH
Q psy12659 832 LTLVVGPPGTGKTDVAVQIISNL 854 (1051)
Q Consensus 832 ~tlIqGPPGTGKT~ti~~iI~~l 854 (1051)
+.+|.|||||||||++..+...+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 57899999999999998887653
No 459
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.17 E-value=0.14 Score=52.03 Aligned_cols=38 Identities=26% Similarity=0.315 Sum_probs=29.6
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCC
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHS 231 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~S 231 (1051)
-++..|.||+|+||||++..++..+-.. +.++-++.+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~--g~~v~~i~~~ 43 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCAR--GIRPGLIKHT 43 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHT--TCCEEEEEEC
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcccc--CCceeEEeeC
Confidence 4678999999999999999999876654 5566555543
No 460
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.17 E-value=0.12 Score=57.93 Aligned_cols=54 Identities=26% Similarity=0.353 Sum_probs=37.3
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEe-CC--HHHHHHHHHHHHhCCC
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVT-HS--NQALNQLFEKIISLDV 247 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a-~S--N~Avd~l~~rl~~~~~ 247 (1051)
+.+..|.||+|+||||++..+...+-.. +.+|++.+ .+ ..|.+++...-...++
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~~--~g~V~l~g~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKNH--GFSVVIAASDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc--CCEEEEEeecccccchHHHHHHHHHHcCc
Confidence 5689999999999999999887765544 55666654 33 3466666554444544
No 461
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.17 E-value=0.082 Score=53.78 Aligned_cols=25 Identities=40% Similarity=0.684 Sum_probs=20.3
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHH
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNL 216 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l 216 (1051)
+-+.+|.||||+||||++..+...+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468899999999999988776544
No 462
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.15 E-value=0.092 Score=53.61 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=21.2
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHH
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNL 216 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l 216 (1051)
..+..|.||||+||||++..+...+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 5688999999999999988876654
No 463
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.13 E-value=0.084 Score=52.54 Aligned_cols=23 Identities=30% Similarity=0.692 Sum_probs=19.3
Q ss_pred CeEEEEccCCCChHHHHHHHHHH
Q psy12659 193 GLTLVVGPPGTGKTDVAVQIISN 215 (1051)
Q Consensus 193 ~~~lI~GPPGTGKT~ti~~ii~~ 215 (1051)
.+.+|.||||+||||++..+...
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999988877654
No 464
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.10 E-value=0.087 Score=53.03 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=19.1
Q ss_pred eEEEEccCCCChHHHHHHHHHHH
Q psy12659 194 LTLVVGPPGTGKTDVAVQIISNL 216 (1051)
Q Consensus 194 ~~lI~GPPGTGKT~ti~~ii~~l 216 (1051)
+.+|.||||+||||++..+...+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 46899999999999888776544
No 465
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=92.10 E-value=0.087 Score=58.04 Aligned_cols=56 Identities=16% Similarity=0.211 Sum_probs=37.3
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHHHHc----------CCC----CeEEEEeCCHH-HHHHHHHHHHhCCC
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNLYHN----------FPH----QRTLIVTHSNQ-ALNQLFEKIISLDV 247 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l~~~----------~p~----~riLv~a~SN~-Avd~l~~rl~~~~~ 247 (1051)
..+++|.||||+|||+++.+++.+.... ..+ .+++.++-.+. -.+++.+++...++
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~ 168 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGI 168 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCC
Confidence 5689999999999999999998764311 112 57877775543 13555555544444
No 466
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.10 E-value=0.087 Score=52.82 Aligned_cols=25 Identities=32% Similarity=0.635 Sum_probs=21.1
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHH
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNL 854 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~l 854 (1051)
+.+.+|.||||+||||++..+...+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999988776643
No 467
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=92.09 E-value=0.065 Score=53.75 Aligned_cols=23 Identities=30% Similarity=0.637 Sum_probs=19.4
Q ss_pred CCeEEEECCCCCChhHHHHHHHH
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIIS 852 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~ 852 (1051)
+.+.+|.||||+||||++..+..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHh
Confidence 56899999999999998876644
No 468
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.09 E-value=0.13 Score=57.59 Aligned_cols=54 Identities=26% Similarity=0.335 Sum_probs=37.2
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEec-c--hHHHHHHHHHHHhcCC
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTH-S--NQALNQLFEKIISLDV 885 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~-S--N~Ald~l~e~l~~~~~ 885 (1051)
+.+..|.||+|+||||++..+...+-. .+.+|++.+. + ..|.+++...-...++
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~--~~g~V~l~g~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKN--HGFSVVIAASDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh--cCCEEEEEeecccccchHHHHHHHHHHcCc
Confidence 678999999999999999988775544 4566776653 2 3456665554444443
No 469
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=92.08 E-value=0.045 Score=66.82 Aligned_cols=49 Identities=14% Similarity=0.117 Sum_probs=39.7
Q ss_pred CCCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHh
Q psy12659 191 QPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIIS 244 (1051)
Q Consensus 191 ~~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~ 244 (1051)
.....+++||.|||||..+... ++.. +.++||++||...+.++.+++.+
T Consensus 231 ~~~~vlv~ApTGSGKT~a~~l~---ll~~--g~~vLVl~PTReLA~Qia~~l~~ 279 (666)
T 3o8b_A 231 SFQVAHLHAPTGSGKSTKVPAA---YAAQ--GYKVLVLNPSVAATLGFGAYMSK 279 (666)
T ss_dssp SCEEEEEECCTTSCTTTHHHHH---HHHT--TCCEEEEESCHHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCchhHHHHHHHH---HHHC--CCeEEEEcchHHHHHHHHHHHHH
Confidence 4667999999999999765543 3334 66999999999999999998865
No 470
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.00 E-value=0.095 Score=53.34 Aligned_cols=35 Identities=17% Similarity=0.318 Sum_probs=26.0
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEE
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIV 228 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~ 228 (1051)
+.+.+|.|||||||||++..+...+-.. +-.+.++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~--~~~v~~~ 43 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA--GHRAELL 43 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEe
Confidence 4578899999999999999887766433 4445333
No 471
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=91.96 E-value=0.15 Score=55.35 Aligned_cols=54 Identities=13% Similarity=0.139 Sum_probs=46.0
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHHhCCCC
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLDVD 248 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~SN~Avd~l~~rl~~~~~~ 248 (1051)
...+||.|+||||||+++.+++.+-+.+ ++++++++.. ...+++..+....|++
T Consensus 21 gs~~li~g~p~~~~~~l~~qfl~~g~~~--Ge~~~~~~~~-e~~~~l~~~~~~~G~d 74 (260)
T 3bs4_A 21 SLILIHEEDASSRGKDILFYILSRKLKS--DNLVGMFSIS-YPLQLIIRILSRFGVD 74 (260)
T ss_dssp CEEEEEECSGGGCHHHHHHHHHHHHHHT--TCEEEEEECS-SCHHHHHHHHHHTTCC
T ss_pred CcEEEEEeCCCccHHHHHHHHHHHHHHC--CCcEEEEEEe-CCHHHHHHHHHHcCCC
Confidence 4568899999999999999999999988 8999999885 3458888888888874
No 472
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.96 E-value=0.085 Score=54.11 Aligned_cols=22 Identities=41% Similarity=0.653 Sum_probs=18.3
Q ss_pred EEEEccCCCChHHHHHHHHHHH
Q psy12659 195 TLVVGPPGTGKTDVAVQIISNL 216 (1051)
Q Consensus 195 ~lI~GPPGTGKT~ti~~ii~~l 216 (1051)
.+|.||||+||||++..+...+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999988876543
No 473
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=91.94 E-value=0.068 Score=58.43 Aligned_cols=24 Identities=38% Similarity=0.648 Sum_probs=20.4
Q ss_pred CCeEEEECCCCCChhHHHHHHHHH
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISN 853 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ 853 (1051)
+.+.+|.||||+||||++..+...
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999887664
No 474
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.93 E-value=0.094 Score=52.39 Aligned_cols=23 Identities=26% Similarity=0.582 Sum_probs=19.2
Q ss_pred CeEEEECCCCCChhHHHHHHHHH
Q psy12659 831 GLTLVVGPPGTGKTDVAVQIISN 853 (1051)
Q Consensus 831 ~~tlIqGPPGTGKT~ti~~iI~~ 853 (1051)
...+|.||||+||||++..+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999998877654
No 475
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=91.93 E-value=0.11 Score=56.36 Aligned_cols=58 Identities=10% Similarity=0.098 Sum_probs=48.6
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHHhcCCCcccc
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLDVDERHL 890 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~~~~~~~~~l 890 (1051)
...++|.|+||||||+++.+.+.+-+. .++++++++. ....+++..+....|++....
T Consensus 21 gs~~li~g~p~~~~~~l~~qfl~~g~~--~Ge~~~~~~~-~e~~~~l~~~~~~~G~dl~~~ 78 (260)
T 3bs4_A 21 SLILIHEEDASSRGKDILFYILSRKLK--SDNLVGMFSI-SYPLQLIIRILSRFGVDVIKY 78 (260)
T ss_dssp CEEEEEECSGGGCHHHHHHHHHHHHHH--TTCEEEEEEC-SSCHHHHHHHHHHTTCCHHHH
T ss_pred CcEEEEEeCCCccHHHHHHHHHHHHHH--CCCcEEEEEE-eCCHHHHHHHHHHcCCCHHHH
Confidence 567899999999999999999999888 7899999997 566778888888888764443
No 476
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=91.91 E-value=0.26 Score=60.16 Aligned_cols=68 Identities=25% Similarity=0.414 Sum_probs=54.8
Q ss_pred CCCCCCCHHHHHHHHHhc---CCC--eEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEecchHHHHHHHHHHHhc
Q psy12659 811 VPPFKLTFHEIEAIRAGM---QPG--LTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISL 883 (1051)
Q Consensus 811 ~~~~~Ln~~Q~~Ai~~~l---~~~--~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~SN~Ald~l~e~l~~~ 883 (1051)
..+|..+..|..||.... ..+ ..++.|.+|+|||.++++++..+ ++++||++++..-+.++.+.|...
T Consensus 8 ~~~~~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~~~~~~-----~~~~lvv~~~~~~A~~l~~el~~~ 80 (661)
T 2d7d_A 8 VSKYQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEV-----NKPTLVIAHNKTLAGQLYSEFKEF 80 (661)
T ss_dssp CCSCCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH-----CCCEEEECSSHHHHHHHHHHHHHH
T ss_pred ecCCCCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHHHHHHh-----CCCEEEEECCHHHHHHHHHHHHHH
Confidence 356677778888877543 333 46788999999999999988754 457999999999999999999877
No 477
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=91.91 E-value=0.17 Score=59.11 Aligned_cols=39 Identities=23% Similarity=0.440 Sum_probs=27.9
Q ss_pred HHHHHHHHHhc---CCCeEEEECCCCCChhHHHHHHHHHHHH
Q psy12659 818 FHEIEAIRAGM---QPGLTLVVGPPGTGKTDVAVQIISNLYH 856 (1051)
Q Consensus 818 ~~Q~~Ai~~~l---~~~~tlIqGPPGTGKT~ti~~iI~~ll~ 856 (1051)
....+.+...+ ..+-.++.||||||||+++..+...+..
T Consensus 186 ~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 186 SKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp HHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 34444455544 3566799999999999999887776643
No 478
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.85 E-value=0.096 Score=52.63 Aligned_cols=25 Identities=20% Similarity=0.549 Sum_probs=20.9
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHH
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNL 854 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~l 854 (1051)
+.+.+|.||||+||||++..+...+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999988776653
No 479
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=91.83 E-value=0.1 Score=53.22 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=21.2
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHH
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNL 854 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~l 854 (1051)
+.+..|.||||+||||++..+...+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 5789999999999999988776654
No 480
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=91.83 E-value=0.097 Score=52.19 Aligned_cols=23 Identities=30% Similarity=0.648 Sum_probs=19.3
Q ss_pred CeEEEECCCCCChhHHHHHHHHH
Q psy12659 831 GLTLVVGPPGTGKTDVAVQIISN 853 (1051)
Q Consensus 831 ~~tlIqGPPGTGKT~ti~~iI~~ 853 (1051)
.+.+|.||||+||||++..+...
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999998877654
No 481
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=91.82 E-value=0.12 Score=56.22 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcC-CCeEEEECCCCCChhHHHHHHHHH
Q psy12659 818 FHEIEAIRAGMQ-PGLTLVVGPPGTGKTDVAVQIISN 853 (1051)
Q Consensus 818 ~~Q~~Ai~~~l~-~~~tlIqGPPGTGKT~ti~~iI~~ 853 (1051)
+.+.+.+..++. +++.+|.||+|+|||+++.++...
T Consensus 18 ~~el~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 18 EEESRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp HHHHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEECCCcCCHHHHHHHHHHH
Confidence 345666666654 589999999999999999887765
No 482
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.81 E-value=0.1 Score=53.11 Aligned_cols=27 Identities=15% Similarity=0.227 Sum_probs=22.4
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHHHH
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNLYH 218 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l~~ 218 (1051)
+.+.+|.||||+||||++..+...+-.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 457889999999999999888776543
No 483
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.79 E-value=0.14 Score=56.64 Aligned_cols=46 Identities=26% Similarity=0.406 Sum_probs=33.5
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeC-C--HHHHHHHH
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTH-S--NQALNQLF 239 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~-S--N~Avd~l~ 239 (1051)
+.+..|.||.|+||||++..+...+-.. +.+|++.+. + ..|.+++.
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~--~g~V~l~g~d~~r~~a~~ql~ 148 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNE--GTKVLMAAGDTFRAAASDQLE 148 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHT--TCCEEEECCCCSCHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHc--CCeEEEEeecccchhHHHHHH
Confidence 4588999999999999999987765544 567877753 2 34455544
No 484
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.78 E-value=0.17 Score=50.50 Aligned_cols=32 Identities=25% Similarity=0.237 Sum_probs=23.6
Q ss_pred eEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEE
Q psy12659 832 LTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLI 865 (1051)
Q Consensus 832 ~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV 865 (1051)
+.+|.||||+||||++..+...+-. .+-.++-
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~--~g~~~i~ 33 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ--KGYFVSL 33 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH--TTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEE
Confidence 4689999999999999888776543 3444443
No 485
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=91.75 E-value=0.096 Score=52.04 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=19.0
Q ss_pred eEEEECCCCCChhHHHHHHHHHH
Q psy12659 832 LTLVVGPPGTGKTDVAVQIISNL 854 (1051)
Q Consensus 832 ~tlIqGPPGTGKT~ti~~iI~~l 854 (1051)
..+|.||||+||||++..+...+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 47889999999999988776543
No 486
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=91.74 E-value=0.1 Score=51.66 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=19.3
Q ss_pred CeEEEEccCCCChHHHHHHHHHH
Q psy12659 193 GLTLVVGPPGTGKTDVAVQIISN 215 (1051)
Q Consensus 193 ~~~lI~GPPGTGKT~ti~~ii~~ 215 (1051)
.+.+|.||||+||||++..+...
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 46889999999999988877554
No 487
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.74 E-value=0.14 Score=56.50 Aligned_cols=37 Identities=22% Similarity=0.295 Sum_probs=28.8
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEeC
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTH 230 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a~ 230 (1051)
+.+..|.||.|+||||++..+...+-.. +.+|++.+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~--~g~V~l~g~ 138 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNL--GKKVMFCAG 138 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEECC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEee
Confidence 5688999999999999999887655433 567877753
No 488
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.74 E-value=0.15 Score=56.40 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=29.0
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEEec
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTH 868 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~a~ 868 (1051)
+.++.|.||.|+||||++..+...+-. .+.+|++.+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~--~~g~V~l~g~ 138 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQN--LGKKVMFCAG 138 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHT--TTCCEEEECC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHh--cCCEEEEEee
Confidence 568999999999999999877665433 4667887764
No 489
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=91.73 E-value=0.1 Score=53.18 Aligned_cols=25 Identities=36% Similarity=0.624 Sum_probs=20.9
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHH
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNL 854 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~l 854 (1051)
..+.+|.||||+||||++..+...+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999988776654
No 490
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=91.73 E-value=0.36 Score=58.62 Aligned_cols=69 Identities=17% Similarity=0.248 Sum_probs=53.3
Q ss_pred CCCCHHHHHHHHHhc---------CCCeEEEEccCCCChHHHHHHHHHHHHHcCC-----CCeEEEEeCCHHHHHHHHHH
Q psy12659 176 IPFTPTQIEAIRAGM---------QPGLTLVVGPPGTGKTDVAVQIISNLYHNFP-----HQRTLIVTHSNQALNQLFEK 241 (1051)
Q Consensus 176 ~~ln~~Q~~Ai~~~l---------~~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p-----~~riLv~a~SN~Avd~l~~r 241 (1051)
..|-+.|+++|.... ...-.++.-+.|+|||-++..++..++...| ..++||+||+ ..+.+-.+.
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E 132 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNE 132 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHH
Confidence 368899999998753 2344788889999999999999999987653 2579999998 456666666
Q ss_pred HHhC
Q psy12659 242 IISL 245 (1051)
Q Consensus 242 l~~~ 245 (1051)
+.+.
T Consensus 133 ~~~~ 136 (644)
T 1z3i_X 133 VGKW 136 (644)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 491
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=91.73 E-value=0.14 Score=59.49 Aligned_cols=47 Identities=28% Similarity=0.400 Sum_probs=35.1
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHHHHcCCCCeEEEEe---CCHHHHHHHH
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVT---HSNQALNQLF 239 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l~~~~p~~riLv~a---~SN~Avd~l~ 239 (1051)
+.+.+|.|++|+||||+++.+...+... .+.+|++++ +.+.|.+++.
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~-~G~kVllvd~D~~r~~a~~ql~ 149 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREK-HKKKVLVVSADVYRPAAIKQLE 149 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHT-SCCCEEEEECCCSSTTHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHh-cCCeEEEEecCCCCccHHHHHH
Confidence 4567788999999999999999887764 266787764 3456666654
No 492
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.70 E-value=0.099 Score=51.40 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=19.1
Q ss_pred eEEEEccCCCChHHHHHHHHHHH
Q psy12659 194 LTLVVGPPGTGKTDVAVQIISNL 216 (1051)
Q Consensus 194 ~~lI~GPPGTGKT~ti~~ii~~l 216 (1051)
+.+|.||||+||||++..+...+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999888776543
No 493
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.69 E-value=0.11 Score=53.81 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=20.3
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHH
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNL 216 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l 216 (1051)
+.+.+|.||||+||||++..+...+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468899999999999888876543
No 494
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=91.66 E-value=0.12 Score=60.17 Aligned_cols=25 Identities=36% Similarity=0.672 Sum_probs=20.1
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHH
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNL 216 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l 216 (1051)
++-.++.||||||||+++..+...+
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHc
Confidence 4568999999999999887765543
No 495
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.66 E-value=0.11 Score=52.77 Aligned_cols=24 Identities=42% Similarity=0.728 Sum_probs=20.1
Q ss_pred CeEEEECCCCCChhHHHHHHHHHH
Q psy12659 831 GLTLVVGPPGTGKTDVAVQIISNL 854 (1051)
Q Consensus 831 ~~tlIqGPPGTGKT~ti~~iI~~l 854 (1051)
-+.+|.||||+||||++..+...+
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478899999999999988776654
No 496
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=91.66 E-value=0.16 Score=59.95 Aligned_cols=23 Identities=48% Similarity=0.754 Sum_probs=19.1
Q ss_pred CCeEEEEccCCCChHHHHHHHHH
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIIS 214 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~ 214 (1051)
+.-.||.||||||||+++..+..
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEECcCCCCHHHHHHHHHH
Confidence 45589999999999998877744
No 497
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.65 E-value=0.096 Score=55.24 Aligned_cols=25 Identities=24% Similarity=0.594 Sum_probs=20.6
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHH
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISNL 216 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~l 216 (1051)
+.+.+|.||||+||||.+..|...+
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 5678899999999999887776543
No 498
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.62 E-value=0.17 Score=51.40 Aligned_cols=35 Identities=17% Similarity=0.323 Sum_probs=26.9
Q ss_pred CCeEEEECCCCCChhHHHHHHHHHHHHhCCCCcEEEE
Q psy12659 830 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIV 866 (1051)
Q Consensus 830 ~~~tlIqGPPGTGKT~ti~~iI~~ll~~~~~~riLV~ 866 (1051)
+.+.+|.||||+||||++..+...+-. .+-.+.++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~--~~~~v~~~ 43 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA--AGHRAELL 43 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEe
Confidence 567899999999999999988877644 44555443
No 499
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=91.60 E-value=0.12 Score=56.24 Aligned_cols=36 Identities=17% Similarity=0.323 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcC-CCeEEEEccCCCChHHHHHHHHHH
Q psy12659 180 PTQIEAIRAGMQ-PGLTLVVGPPGTGKTDVAVQIISN 215 (1051)
Q Consensus 180 ~~Q~~Ai~~~l~-~~~~lI~GPPGTGKT~ti~~ii~~ 215 (1051)
+.+.+.+..++. .++.+|.||+|+|||+++.++...
T Consensus 18 ~~el~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 18 EEESRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp HHHHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEECCCcCCHHHHHHHHHHH
Confidence 455666666553 489999999999999999988654
No 500
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.58 E-value=0.1 Score=53.77 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=20.3
Q ss_pred CCeEEEEccCCCChHHHHHHHHHH
Q psy12659 192 PGLTLVVGPPGTGKTDVAVQIISN 215 (1051)
Q Consensus 192 ~~~~lI~GPPGTGKT~ti~~ii~~ 215 (1051)
..+.+|.||+|+||||++..+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 567899999999999998877553
Done!