RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12659
(1051 letters)
>d1tzya_ a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus),
erythrocytes [TaxId: 9031]}
Length = 106
Score = 69.1 bits (169), Expect = 9e-15
Identities = 28/42 (66%), Positives = 36/42 (85%)
Query: 892 HKKYRITPRYLLLAIKNDVELSQLLSDVTIAQGGVMPNIQSM 933
+KK RI PR+L LAI+ND EL++LL VTIAQGGV+PNIQ++
Sbjct: 61 NKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAV 102
>d1u35c1 a.22.1.1 (C:814-919) macro-H2A.1, histone domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 67.9 bits (166), Expect = 2e-14
Identities = 31/62 (50%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 872 ALNQLFEKIISLDVDERHLLHKKYRITPRYLLLAIKNDVELSQLLSDVTIAQGGVMPNIQ 931
L L +I+ L V+ +KK R+TPR++LLA+ ND EL+QLL VTIA GGV+PNI
Sbjct: 41 VLEYLTAEILELAVNAARD-NKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIH 99
Query: 932 SM 933
Sbjct: 100 PE 101
>d1f66c_ a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), variant
H2A.Z [TaxId: 9606]}
Length = 103
Score = 60.6 bits (147), Expect = 8e-12
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 872 ALNQLFEKIISLDVDERHLLHKKYRITPRYLLLAIKNDVELSQLLSDVTIAQGGVMPNIQ 931
L L +++ L + K RITPR+L LAI+ D EL L+ TIA GGV+P+I
Sbjct: 42 ILEYLTAEVLELAGNASKD-LKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIH 99
Query: 932 SM 933
Sbjct: 100 KS 101
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia
coli, RepD [TaxId: 562]}
Length = 306
Score = 48.6 bits (114), Expect = 2e-06
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 179 TPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNL--YHNFPHQRTLIVTHSNQALN 236
P Q +A+ P LV+ G+GKT V I++L + + VT +N+A
Sbjct: 3 NPGQQQAVEFVTGP--CLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAR 60
Query: 237 QLFEKIISLDVDE 249
++ E++ +
Sbjct: 61 EMKERVGQTLGRK 73
Score = 44.3 bits (103), Expect = 4e-05
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 815 KLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNL--YHNFPHQRTLIVTHSNQA 872
+L + +A+ P LV+ G+GKT V I++L + + VT +N+A
Sbjct: 1 RLNPGQQQAVEFVTGP--CLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKA 58
Query: 873 LNQLFEKIISLDVDE 887
++ E++ +
Sbjct: 59 AREMKERVGQTLGRK 73
>g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 623
Score = 46.5 bits (109), Expect = 2e-05
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 179 TPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNL--YHNFPHQRTLIVTHSNQALN 236
Q EA+R P L++ G+GKT V I+ L + L +T +N+A
Sbjct: 13 NKEQQEAVRTTEGP--LLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAR 70
Query: 237 QLFEKIISL 245
++ E++ SL
Sbjct: 71 EMRERVQSL 79
Score = 42.2 bits (98), Expect = 3e-04
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 822 EAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNL--YHNFPHQRTLIVTHSNQALNQLFEK 879
EA+R P L++ G+GKT V I+ L + L +T +N+A ++ E+
Sbjct: 18 EAVRTTEGP--LLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRER 75
Query: 880 IISL 883
+ SL
Sbjct: 76 VQSL 79
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 318
Score = 43.9 bits (102), Expect = 6e-05
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 179 TPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNL--YHNFPHQRTLIVTHSNQALN 236
Q EA+R P L++ G+GKT V I+ L + L +T +N+A
Sbjct: 13 NKEQQEAVRTTEGP--LLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAR 70
Query: 237 QLFEKIISLDVDERH 251
++ E++ SL
Sbjct: 71 EMRERVQSLLGGAAE 85
Score = 39.6 bits (91), Expect = 0.002
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 815 KLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNL--YHNFPHQRTLIVTHSNQA 872
L + EA+R P L++ G+GKT V I+ L + L +T +N+A
Sbjct: 11 HLNKEQQEAVRTTEGP--LLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKA 68
Query: 873 LNQLFEKIISLDVDERH 889
++ E++ SL
Sbjct: 69 AREMRERVQSLLGGAAE 85
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 43.0 bits (100), Expect = 9e-05
Identities = 17/75 (22%), Positives = 23/75 (30%), Gaps = 4/75 (5%)
Query: 184 EAIRAGMQPG-LTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKI 242
E G + L G GTGKT + + + N N S QL
Sbjct: 17 EMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEES---RAQLLRNA 73
Query: 243 ISLDVDERHLLRLGH 257
S +D + R
Sbjct: 74 YSWGMDFEEMERQNL 88
Score = 41.8 bits (97), Expect = 2e-04
Identities = 16/74 (21%), Positives = 23/74 (31%), Gaps = 4/74 (5%)
Query: 822 EAIRAGMQPG-LTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKI 880
E G + L G GTGKT + + + N N S QL
Sbjct: 17 EMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEES---RAQLLRNA 73
Query: 881 ISLDVDERHLLHKK 894
S +D + +
Sbjct: 74 YSWGMDFEEMERQN 87
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 41.5 bits (96), Expect = 2e-04
Identities = 22/90 (24%), Positives = 31/90 (34%), Gaps = 7/90 (7%)
Query: 173 KNTIPFTPTQIE----AIRAGMQPG-LTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLI 227
I T IE G+ G TLV G GTGKT ++Q + N F +
Sbjct: 2 HQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFV 61
Query: 228 VTHSNQALNQLFEKIISLDVDERHLLRLGH 257
+ + + S D L+ G
Sbjct: 62 TFE--ETPQDIIKNARSFGWDLAKLVDEGK 89
Score = 39.2 bits (90), Expect = 0.001
Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 3/90 (3%)
Query: 822 EAIRAGMQPG-LTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKI 880
+ G+ G TLV G GTGKT ++Q + N F + + + +
Sbjct: 17 DISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFE--ETPQDIIKNA 74
Query: 881 ISLDVDERHLLHKKYRITPRYLLLAIKNDV 910
S D L+ + +V
Sbjct: 75 RSFGWDLAKLVDEGKLFILDASPDPEGQEV 104
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 41.2 bits (95), Expect = 4e-04
Identities = 20/121 (16%), Positives = 41/121 (33%), Gaps = 12/121 (9%)
Query: 804 TDNPTKLVPPFKLTFHEIEAIRAGMQPG-LTLVVGPPGTGKTDVAVQIISNL-------Y 855
T P ++ F ++ + M G + +V P G GK+ +A+Q+ + +
Sbjct: 2 THKPINILEAFAAAPPPLDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLE 61
Query: 856 HNFPHQRTLIVTHSNQALNQLFEKIISL----DVDERHLLHKKYRITPRYLLLAIKNDVE 911
+I + + ++ +L +ER + I P L E
Sbjct: 62 VGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAVADGLLIQPLIGSLPNIMAPE 121
Query: 912 L 912
Sbjct: 122 W 122
Score = 38.5 bits (88), Expect = 0.003
Identities = 10/39 (25%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 179 TPTQIEAIRAGMQPG-LTLVVGPPGTGKTDVAVQIISNL 216
P ++ + M G + +V P G GK+ +A+Q+ + +
Sbjct: 15 APPPLDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQI 53
>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 172
Score = 39.0 bits (91), Expect = 0.001
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 892 HKKYRITPRYLLLAIKNDVELSQLL 916
+ Y IT + + +A+ D L +
Sbjct: 147 IRHYEITKQDIKVAMCADKVLMDMF 171
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 38.7 bits (89), Expect = 0.002
Identities = 15/102 (14%), Positives = 33/102 (32%), Gaps = 12/102 (11%)
Query: 822 EAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKII 881
+ R LT++ PG GKT + I RTLI+ + ++ E +
Sbjct: 4 DIFRKKR---LTIMDLHPGAGKTKRYLPAIVREAIK-RGLRTLILAPTRVVAAEMEEALR 59
Query: 882 SLDVDERHLLHKKYR--------ITPRYLLLAIKNDVELSQL 915
L + + + + + + + + +
Sbjct: 60 GLPIRYQTPAIRAEHTGREIVDLMCHATFTMRLLSPIRVPNY 101
Score = 35.7 bits (81), Expect = 0.022
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 184 EAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKI 242
+ R LT++ PG GKT + I RTLI+ + ++ E +
Sbjct: 4 DIFRKKR---LTIMDLHPGAGKTKRYLPAIVREAIK-RGLRTLILAPTRVVAAEMEEAL 58
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 37.9 bits (86), Expect = 0.004
Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 184 EAIRAGMQPG-LTLVVGPPGTGKTDVAVQIISNLYHNFPH 222
+ ++ G++ G +T + G TGKT + +
Sbjct: 14 KLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDR 53
Score = 37.9 bits (86), Expect = 0.004
Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 822 EAIRAGMQPG-LTLVVGPPGTGKTDVAVQIISNLYHNFPH 860
+ ++ G++ G +T + G TGKT + +
Sbjct: 14 KLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDR 53
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 37.8 bits (86), Expect = 0.004
Identities = 9/58 (15%), Positives = 20/58 (34%), Gaps = 5/58 (8%)
Query: 172 RKNTIPFTPTQI----EAIRAGMQPG-LTLVVGPPGTGKTDVAVQIISNLYHNFPHQR 224
R++ + T + G++ G +T + G TGK+ + +
Sbjct: 9 RRSELICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGG 66
Score = 36.2 bits (82), Expect = 0.012
Identities = 7/42 (16%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 822 EAIRAGMQPG-LTLVVGPPGTGKTDVAVQIISNLYHNFPHQR 862
+ G++ G +T + G TGK+ + +
Sbjct: 25 TLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGG 66
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 37.7 bits (86), Expect = 0.005
Identities = 8/41 (19%), Positives = 12/41 (29%), Gaps = 1/41 (2%)
Query: 818 FHEIEAIRAGMQPG-LTLVVGPPGTGKTDVAVQIISNLYHN 857
I G + G + +V G GK+ Q
Sbjct: 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA 62
Score = 37.3 bits (85), Expect = 0.006
Identities = 8/52 (15%), Positives = 16/52 (30%), Gaps = 4/52 (7%)
Query: 172 RKNTIPFTPTQIEAIRA---GMQPG-LTLVVGPPGTGKTDVAVQIISNLYHN 219
+ ++ + I G + G + +V G GK+ Q
Sbjct: 11 SEESVGLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA 62
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 36.4 bits (83), Expect = 0.010
Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 2/74 (2%)
Query: 172 RKNTIPFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHS 231
RK Q + ++ P G GKT + + L+ +R ++ +
Sbjct: 38 RKCVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMS--LFLALKGKRCYVIFPT 95
Query: 232 NQALNQLFEKIISL 245
+ + Q E I
Sbjct: 96 SLLVIQAAETIRKY 109
Score = 33.3 bits (75), Expect = 0.11
Identities = 10/70 (14%), Positives = 24/70 (34%), Gaps = 2/70 (2%)
Query: 814 FKLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQAL 873
+ + + ++ P G GKT + + L+ +R ++ ++ +
Sbjct: 42 GEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMS--LFLALKGKRCYVIFPTSLLV 99
Query: 874 NQLFEKIISL 883
Q E I
Sbjct: 100 IQAAETIRKY 109
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain
(RecD) {Escherichia coli [TaxId: 562]}
Length = 359
Score = 36.4 bits (83), Expect = 0.015
Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 2/91 (2%)
Query: 809 KLVPPFKLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNL--YHNFPHQRTLIV 866
KL P + A + ++++ G PGTGKT ++++ L + R +
Sbjct: 142 KLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLA 201
Query: 867 THSNQALNQLFEKIISLDVDERHLLHKKYRI 897
+ +A +L E + +K RI
Sbjct: 202 APTGKAAARLTESLGKALRQLPLTDEQKKRI 232
Score = 36.0 bits (82), Expect = 0.020
Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 179 TPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNL--YHNFPHQRTLIVTHSNQALN 236
Q A + ++++ G PGTGKT ++++ L + R + + +A
Sbjct: 150 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAA 209
Query: 237 QLFEKII 243
+L E +
Sbjct: 210 RLTESLG 216
>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB),
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 485
Score = 36.6 bits (83), Expect = 0.015
Identities = 31/231 (13%), Positives = 65/231 (28%), Gaps = 14/231 (6%)
Query: 831 GLTLVVGPPGTGKTDVAVQIISNL----------YHNFPHQRTLIVTHSNQALNQLFEKI 880
G L+ GTGKT + L + L+VT + A +L +I
Sbjct: 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRI 76
Query: 881 ISLDVDERHLLHKKYRITPRYLLLAIKNDVELSQLLSDVTIAQGGVMPNIQSMKFDKTLK 940
S + R ++ P L + +++ + + M +
Sbjct: 77 RSNIHELRIACLRETTDNP--LYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQ 134
Query: 941 TLLSPWKSEDGSPFFGGWARMAQPIVNFAVVEVAKPNIEEALET--EKDFSRYGRVNYVL 998
+L+ E G F + A + + + + F + +L
Sbjct: 135 RMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQALL 194
Query: 999 AKRLDLLQEVERLQKSLDVSGDVAYTCETAGHFFLYQVLARWEKFLATVRQ 1049
LQ + K+ + + + V +W + +
Sbjct: 195 RDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDA 245
Score = 32.8 bits (73), Expect = 0.22
Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 10/62 (16%)
Query: 193 GLTLVVGPPGTGKTDVAVQIISNL----------YHNFPHQRTLIVTHSNQALNQLFEKI 242
G L+ GTGKT + L + L+VT + A +L +I
Sbjct: 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRI 76
Query: 243 IS 244
S
Sbjct: 77 RS 78
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 36.1 bits (82), Expect = 0.018
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 820 EIEAIRAGM----QPGLTLVVGPPGTGKTDVAVQIISNLYHNF 858
+E + G P L+ G PG+GKT + I N
Sbjct: 18 NLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNV 60
Score = 35.3 bits (80), Expect = 0.029
Identities = 19/116 (16%), Positives = 31/116 (26%), Gaps = 4/116 (3%)
Query: 183 IEAIRAGM----QPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQL 238
+E + G P L+ G PG+GKT + I N + ++L
Sbjct: 19 LEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDEL 78
Query: 239 FEKIISLDVDERHLLRLGHGEEALETEKDFSRYGRVNYVLAKRLDLLQEVERLQKS 294
+ V E + D + +Q LQ
Sbjct: 79 VKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAK 134
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 35.4 bits (80), Expect = 0.023
Identities = 17/136 (12%), Positives = 42/136 (30%), Gaps = 9/136 (6%)
Query: 172 RKNTIPFTPTQI----EAIRAGMQPG-LTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTL 226
+++T+ T + G++ +T G G+GKT + Q NL + +
Sbjct: 9 QRSTVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQN---PEFLF 65
Query: 227 IVTHSNQALNQLFEKIISLDVDER-HLLRLGHGEEALETEKDFSRYGRVNYVLAKRLDLL 285
+ K + +D + R+ E + +
Sbjct: 66 YDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQM 125
Query: 286 QEVERLQKSLDVSGDV 301
E+++ + ++
Sbjct: 126 LFAEKIEDLIQEGNNI 141
Score = 34.3 bits (77), Expect = 0.055
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 822 EAIRAGMQPG-LTLVVGPPGTGKTDVAVQIISNL 854
+ G++ +T G G+GKT + Q NL
Sbjct: 25 SVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 58
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 34.6 bits (78), Expect = 0.033
Identities = 13/61 (21%), Positives = 23/61 (37%)
Query: 196 LVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLDVDERHLLRL 255
+ GPPG GKT + + L + Q ++ +++L L R+
Sbjct: 5 FLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRV 64
Query: 256 G 256
G
Sbjct: 65 G 65
Score = 33.8 bits (76), Expect = 0.053
Identities = 11/63 (17%), Positives = 20/63 (31%)
Query: 834 LVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLDVDERHLLHK 893
+ GPPG GKT + + L + Q ++ +++L L
Sbjct: 5 FLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRV 64
Query: 894 KYR 896
Sbjct: 65 GLE 67
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 34.4 bits (77), Expect = 0.039
Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Query: 172 RKNTIPFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHS 231
R++ I Q + L+V P G GKT +A+ I + + ++
Sbjct: 4 RRDLIQPRIYQEVIYAKCKETN-CLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTK 62
Query: 232 NQA 234
Sbjct: 63 PLV 65
Score = 28.6 bits (62), Expect = 3.4
Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 1/59 (1%)
Query: 814 FKLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQA 872
+ ++ + L+V P G GKT +A+ I + + ++
Sbjct: 8 IQPRIYQEVIYAKCKETN-CLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLV 65
>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain
{Escherichia coli [TaxId: 562]}
Length = 263
Score = 33.8 bits (77), Expect = 0.098
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 195 TLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLDVDERHLLR 254
+ GP +GKT + +Q+I+ +T + AL+ ++ + + +D+D +
Sbjct: 57 VEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQ 113
Query: 255 LGHGEEALETEKDFSRYGRV 274
GE+ALE +R G V
Sbjct: 114 PDTGEQALEICDALARSGAV 133
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 32.3 bits (72), Expect = 0.10
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Query: 833 TLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLDVDERHLLH 892
T++ PG GKT + I RTL++ + L+++ E LDV
Sbjct: 10 TVLDFHPGAGKTRRFLPQILA-ECARRRLRTLVLAPTRVVLSEMKEAFHGLDVKFHTQAF 68
Query: 893 KKYR 896
+
Sbjct: 69 SAHG 72
Score = 32.0 bits (71), Expect = 0.14
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 195 TLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFE 240
T++ PG GKT + I RTL++ + L+++ E
Sbjct: 10 TVLDFHPGAGKTRRFLPQILA-ECARRRLRTLVLAPTRVVLSEMKE 54
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB
{Bacillus caldotenax [TaxId: 1395]}
Length = 413
Score = 33.2 bits (75), Expect = 0.15
Identities = 21/136 (15%), Positives = 48/136 (35%), Gaps = 7/136 (5%)
Query: 180 PTQIEAIRAGMQPGLT--LVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQ 237
P I + G++ G+ ++G GTGKT +I+ + ++ TL++ H+ Q
Sbjct: 17 PQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQV-----NKPTLVIAHNKTLAGQ 71
Query: 238 LFEKIISLDVDERHLLRLGHGEEALETEKDFSRYGRVNYVLAKRLDLLQEVERLQKSLDV 297
L+ ++ + + + A + ++ + +L
Sbjct: 72 LYSELKEFFPHNAVEYFVSYYDYAQPEAYVPQTDTYIEKDAKINDEIDKLRHSATSALFE 131
Query: 298 SGDVAYTCETAGHFFL 313
DV + + L
Sbjct: 132 RRDVIIVASVSCIYGL 147
Score = 31.3 bits (70), Expect = 0.68
Identities = 20/98 (20%), Positives = 42/98 (42%), Gaps = 10/98 (10%)
Query: 809 KLVPPFKLTFHEIEAIRA---GMQPGLT--LVVGPPGTGKTDVAVQIISNLYHNFPHQRT 863
+LV P++ + +AI G++ G+ ++G GTGKT +I+ + ++ T
Sbjct: 5 QLVAPYEPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQV-----NKPT 59
Query: 864 LIVTHSNQALNQLFEKIISLDVDERHLLHKKYRITPRY 901
L++ H+ QL+ ++ Y +
Sbjct: 60 LVIAHNKTLAGQLYSELKEFFPHNAVEYFVSYYDYAQP 97
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 31.8 bits (71), Expect = 0.15
Identities = 7/48 (14%), Positives = 15/48 (31%), Gaps = 5/48 (10%)
Query: 195 TLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKI 242
+ P G+GK+ + + L++ S A +
Sbjct: 11 AHLHAPTGSGKSTKVPAAYAA-----QGYKVLVLNPSVAATLGFGAYM 53
Score = 31.8 bits (71), Expect = 0.15
Identities = 7/48 (14%), Positives = 15/48 (31%), Gaps = 5/48 (10%)
Query: 833 TLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKI 880
+ P G+GK+ + + L++ S A +
Sbjct: 11 AHLHAPTGSGKSTKVPAAYAA-----QGYKVLVLNPSVAATLGFGAYM 53
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli
[TaxId: 562]}
Length = 206
Score = 32.7 bits (73), Expect = 0.18
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 5/65 (7%)
Query: 178 FTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQ 237
F P Q E I + LVV P G GK+ + T++V+ +
Sbjct: 26 FRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPA-----LLLNGLTVVVSPLISLMKD 80
Query: 238 LFEKI 242
+++
Sbjct: 81 QVDQL 85
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 32.3 bits (72), Expect = 0.18
Identities = 28/190 (14%), Positives = 48/190 (25%), Gaps = 23/190 (12%)
Query: 190 MQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLDVDE 249
M P L GTGKT + ++I L + TH +DVD+
Sbjct: 1 MIP-LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH------------HDMDVDK 47
Query: 250 RHLLRLGHGEEALETEKDFSRYGRVNYVLAKRLDLLQEVERLQKSLDVSGDVAYTCETAG 309
+ S+ + L + D+
Sbjct: 48 PGKDSYELRKAGAAQTIVASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKH 107
Query: 310 HFFLYQVLARWEKFLATVRPSDGKTVPVKTIKTEFPFHGFFENAPKPLFKEKSYETDMEI 369
VL R + V + ++ P N L E +
Sbjct: 108 EEIAKIVLFRDGAGHRPEELVIDRH--VIAVASDVPL-----NLDVALLDINDVE---GL 157
Query: 370 AEGCFRYIEK 379
A+ +++K
Sbjct: 158 ADFVVEWMQK 167
Score = 30.3 bits (67), Expect = 0.77
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 828 MQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALN 874
M P L GTGKT + ++I L + TH + ++
Sbjct: 1 MIP-LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVD 46
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 32.7 bits (73), Expect = 0.20
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Query: 172 RKNTIPFTPTQI----EAIRAGMQPG-LTLVVGPPGTGKTDVAVQIISNLYHNFPHQR 224
++ TI T + + G++ +T V G G+GKT +A + +
Sbjct: 11 KRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGG 68
Score = 31.2 bits (69), Expect = 0.48
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 822 EAIRAGMQPG-LTLVVGPPGTGKTDVAVQIISNLYHNFPHQR 862
+ + G++ +T V G G+GKT +A + +
Sbjct: 27 KLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGG 68
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 202
Score = 31.9 bits (71), Expect = 0.30
Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 2/68 (2%)
Query: 178 FTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQ 237
P Q EA+ L+ P GKT + ++ + ++L V +
Sbjct: 26 LFPPQAEAVEKVFSGKNLLLAMPTAAGKTL--LAEMAMVREAIKGGKSLYVVPLRALAGE 83
Query: 238 LFEKIISL 245
+E
Sbjct: 84 KYESFKKW 91
Score = 28.0 bits (61), Expect = 4.7
Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 2/69 (2%)
Query: 815 KLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALN 874
+L + EA+ L+ P GKT + ++ + ++L V
Sbjct: 25 ELFPPQAEAVEKVFSGKNLLLAMPTAAGKTL--LAEMAMVREAIKGGKSLYVVPLRALAG 82
Query: 875 QLFEKIISL 883
+ +E
Sbjct: 83 EKYESFKKW 91
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 31.4 bits (70), Expect = 0.33
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 191 QPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTH 230
P + + VG PG GK+ + + + + ++ TL
Sbjct: 13 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQ 52
Score = 31.4 bits (70), Expect = 0.33
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 829 QPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTH 868
P + + VG PG GK+ + + + + ++ TL
Sbjct: 13 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQ 52
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 206
Score = 31.8 bits (71), Expect = 0.34
Identities = 33/166 (19%), Positives = 48/166 (28%), Gaps = 20/166 (12%)
Query: 120 IGFLLIQVLKKRTEEEENEDEDVEMENKDGKPIITVEPHVIPSRGPYLFNEPRKNTIPFT 179
G + R E E +E + PI T I
Sbjct: 28 SGTYRALAFRYRDIIEYFESNGIEFVDNAADPIPTPY---------------FDAEISLR 72
Query: 180 PTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLF 239
Q +A+ + +V P G+GKT VA+ I+ L TLIV + Q
Sbjct: 73 DYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTP-----TLIVVPTLALAEQWK 127
Query: 240 EKIISLDVDERHLLRLGHGEEALETEKDFSRYGRVNYVLAKRLDLL 285
E++ + E T + L R LL
Sbjct: 128 ERLGIFGEEYVGEFSGRIKELKPLTVSTYDSAYVNAEKLGNRFMLL 173
Score = 30.6 bits (68), Expect = 0.68
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 812 PPFKLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQ 871
L ++ +A+ + +V P G+GKT VA+ I+ L + + Q
Sbjct: 67 AEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPT-LIVVPTLALAEQ 125
Query: 872 ALNQL 876
+L
Sbjct: 126 WKERL 130
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB
{Thermus thermophilus [TaxId: 274]}
Length = 408
Score = 31.7 bits (71), Expect = 0.42
Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Query: 180 PTQIEAIRAGMQPGLT--LVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQ 237
P I + ++ G ++G GTGKT ++I L + L++ + Q
Sbjct: 14 PKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEAL-----GRPALVLAPNKILAAQ 68
Query: 238 LFEKIISLDVDERHLL 253
L + L +
Sbjct: 69 LAAEFRELFPENAVEY 84
Score = 29.1 bits (64), Expect = 3.7
Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 7/73 (9%)
Query: 821 IEAIRAGMQPGLT--LVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFE 878
I + ++ G ++G GTGKT ++I L + L++ + QL
Sbjct: 17 IAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEAL-----GRPALVLAPNKILAAQLAA 71
Query: 879 KIISLDVDERHLL 891
+ L +
Sbjct: 72 EFRELFPENAVEY 84
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 31.6 bits (70), Expect = 0.43
Identities = 12/98 (12%), Positives = 25/98 (25%), Gaps = 8/98 (8%)
Query: 822 EAIRAGMQPG-LTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFE-- 878
+ + G++ +T G TGKT ++ + N
Sbjct: 28 KLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDR 87
Query: 879 -----KIISLDVDERHLLHKKYRITPRYLLLAIKNDVE 911
++D D R + + + V
Sbjct: 88 LRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVA 125
Score = 31.2 bits (69), Expect = 0.54
Identities = 8/53 (15%), Positives = 19/53 (35%), Gaps = 5/53 (9%)
Query: 172 RKNTIPFTPTQI----EAIRAGMQPG-LTLVVGPPGTGKTDVAVQIISNLYHN 219
++ + T + + G++ +T G TGKT ++ +
Sbjct: 12 KRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLP 64
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 31.6 bits (70), Expect = 0.46
Identities = 23/114 (20%), Positives = 38/114 (33%), Gaps = 3/114 (2%)
Query: 196 LVVGPPGTGKTDVAVQIISNLYHNF-PHQRTLIVTHSNQALNQLFEKIISLDVDERHLLR 254
+G G GKT +A + + T+ + N I+SL V +
Sbjct: 50 GSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPI 109
Query: 255 LGHGEEALETEKDFSRYGRVNYVLAKRLDLLQEVERLQKSLDVSGDVAYTCETA 308
G AL+ K V L +L E + + S ++ + YT
Sbjct: 110 QVRGAPALDILKALVDNLYVEN--HYLLVILDEFQSMLSSPRIAAEDLYTLLRV 161
Score = 28.2 bits (61), Expect = 5.9
Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 1/79 (1%)
Query: 834 LVVGPPGTGKTDVAVQIISNLYHNF-PHQRTLIVTHSNQALNQLFEKIISLDVDERHLLH 892
+G G GKT +A + + T+ + N I+SL V +
Sbjct: 50 GSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPI 109
Query: 893 KKYRITPRYLLLAIKNDVE 911
+ +L A+ +++
Sbjct: 110 QVRGAPALDILKALVDNLY 128
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 31.2 bits (69), Expect = 0.48
Identities = 10/55 (18%), Positives = 16/55 (29%)
Query: 183 IEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQ 237
+ + +AG L+ PG G + + L P L Q
Sbjct: 15 VASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQ 69
Score = 31.2 bits (69), Expect = 0.48
Identities = 10/55 (18%), Positives = 16/55 (29%)
Query: 821 IEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQ 875
+ + +AG L+ PG G + + L P L Q
Sbjct: 15 VASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQ 69
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 31.3 bits (71), Expect = 0.58
Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 6/72 (8%)
Query: 148 DGKPIITVEPHVIPSRGPYLFNEPRKNTIPFTPTQIEAIRAGMQP----GLTLVVGPPGT 203
D + I + F E T I+ + + P G + G G
Sbjct: 22 DERGPIKTKQFAAIHAEAPEFVEMSVEQEIL-VTGIKVVDL-LAPYAKGGKIGLFGGAGV 79
Query: 204 GKTDVAVQIISN 215
GKT + +++I+N
Sbjct: 80 GKTVLIMELINN 91
Score = 28.9 bits (65), Expect = 3.1
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 834 LVVGPPGTGKTDVAVQIISN 853
+ G G GKT + +++I+N
Sbjct: 72 GLFGGAGVGKTVLIMELINN 91
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 31.3 bits (70), Expect = 0.59
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 184 EAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQR 224
E +R + P L++GP G GKT++A ++ F
Sbjct: 41 EPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 81
Score = 31.3 bits (70), Expect = 0.59
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 822 EAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQR 862
E +R + P L++GP G GKT++A ++ F
Sbjct: 41 EPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 81
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 30.9 bits (68), Expect = 0.78
Identities = 15/123 (12%), Positives = 31/123 (25%), Gaps = 9/123 (7%)
Query: 172 RKNTIPFTPTQIEAIRA---------GMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPH 222
+P Q++ + G ++G PGTGKT ++
Sbjct: 14 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTA 73
Query: 223 QRTLIVTHSNQALNQLFEKIISLDVDERHLLRLGHGEEALETEKDFSRYGRVNYVLAKRL 282
+ I + + +I L E + +++
Sbjct: 74 RFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDA 133
Query: 283 DLL 285
L
Sbjct: 134 FNL 136
Score = 29.8 bits (65), Expect = 1.8
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 827 GMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFP 859
G ++G PGTGKT ++
Sbjct: 40 GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT 72
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 30.5 bits (67), Expect = 0.83
Identities = 11/57 (19%), Positives = 22/57 (38%)
Query: 184 EAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFE 240
L+ GP GTGK + ++ +++ ++ + V A N+ E
Sbjct: 25 SLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLE 81
Score = 30.5 bits (67), Expect = 0.83
Identities = 11/57 (19%), Positives = 22/57 (38%)
Query: 822 EAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFE 878
L+ GP GTGK + ++ +++ ++ + V A N+ E
Sbjct: 25 SLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLE 81
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 30.5 bits (67), Expect = 0.90
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 820 EIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEK 879
EIE ++ P +TLV+G TGK+ + I+ L + L + + ++
Sbjct: 20 EIEKLKGLRAP-ITLVLGLRRTGKSSIIKIGINELNLPY---IYLDLRKFEERNYISYKD 75
Query: 880 IISLDVDERHLLHKKYRITPRYL 902
+ E + L K+ + L
Sbjct: 76 FLLELQKEINKLVKRLPSLLKAL 98
Score = 28.9 bits (63), Expect = 2.9
Identities = 21/114 (18%), Positives = 41/114 (35%), Gaps = 9/114 (7%)
Query: 182 QIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNL--------YHNFPHQRTLIVTHSNQ 233
+IE ++ P +TLV+G TGK+ + I+ L F + +
Sbjct: 20 EIEKLKGLRAP-ITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLL 78
Query: 234 ALNQLFEKIISLDVDERHLLRLGHGEEALETEKDFSRYGRVNYVLAKRLDLLQE 287
L + K++ L+ G + E F+ + A L+ ++
Sbjct: 79 ELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQ 132
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 30.5 bits (67), Expect = 0.95
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 173 KNTIPFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTH 230
+N+ + +G+ ++ GPPG GKT A + L ++ Q V
Sbjct: 34 ENSKKNSFKHAGKDGSGVFRAA-MLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRS 90
Score = 29.4 bits (64), Expect = 2.2
Identities = 12/77 (15%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Query: 834 LVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLDVDERHLLHK 893
++ GPPG GKT A + L ++ Q V + + ++ V ++
Sbjct: 56 MLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNE 115
Query: 894 KY-RITPRYLLLAIKND 909
+ + ++ ++ +
Sbjct: 116 EAQNLNGKHFVIIMDEV 132
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 30.0 bits (66), Expect = 1.1
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 190 MQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPH 222
M + ++ G GK+ + + S L +
Sbjct: 1 MTTRMIILNGGSSAGKSGIVRCLQSVLPEPWLA 33
Score = 30.0 bits (66), Expect = 1.1
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 828 MQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPH 860
M + ++ G GK+ + + S L +
Sbjct: 1 MTTRMIILNGGSSAGKSGIVRCLQSVLPEPWLA 33
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 30.5 bits (67), Expect = 1.1
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 191 QPGLTLVVGPPGTGKTDVAVQIISNLYH 218
+ G+ L++G G+GK+ + I+ LY
Sbjct: 22 KEGINLIIGQNGSGKSSLLDAILVGLYW 49
Score = 30.5 bits (67), Expect = 1.1
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 829 QPGLTLVVGPPGTGKTDVAVQIISNLYH 856
+ G+ L++G G+GK+ + I+ LY
Sbjct: 22 KEGINLIIGQNGSGKSSLLDAILVGLYW 49
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 29.5 bits (65), Expect = 1.3
Identities = 16/163 (9%), Positives = 46/163 (28%), Gaps = 9/163 (5%)
Query: 828 MQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLDVDE 887
+ + L+ G PG+GK+ +A + + H + + + + + +
Sbjct: 2 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWG--YIKHGRIDPWLPQSHQQ 59
Query: 888 RHLLHKKYRITPRYLLLAIKNDVELSQLLSDVTIAQGGVMPNIQSMKFDKTLKTLLS--- 944
++ + + + D A + + + T +
Sbjct: 60 NRMIMQIAADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCL 119
Query: 945 ----PWKSEDGSPFFGGWARMAQPIVNFAVVEVAKPNIEEALE 983
S+ V+ V+ + ++AL+
Sbjct: 120 DRGGDSLSDPLVVADLHSQFADLGAFEHHVLPVSGKDTDQALQ 162
Score = 29.5 bits (65), Expect = 1.5
Identities = 8/74 (10%), Positives = 25/74 (33%), Gaps = 3/74 (4%)
Query: 190 MQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLDVDE 249
+ + L+ G PG+GK+ +A + + H + + + +
Sbjct: 2 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWG---YIKHGRIDPWLPQSHQ 58
Query: 250 RHLLRLGHGEEALE 263
++ + + +
Sbjct: 59 QNRMIMQIAADVAG 72
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 29.5 bits (65), Expect = 1.4
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 834 LVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLDVDERHLLHK 893
+++G PG GK A +I++ PH T + + +D L+
Sbjct: 4 VLMGLPGAGKGTQAEKIVAAY--GIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPD 61
Query: 894 KYRI 897
+ I
Sbjct: 62 EVTI 65
Score = 28.0 bits (61), Expect = 5.1
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 196 LVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLDVDERHLLR 254
+++G PG GK A +I++ PH T + + +D L+
Sbjct: 4 VLMGLPGAGKGTQAEKIVAAY--GIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVP 60
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 30.0 bits (67), Expect = 1.4
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 180 PTQIEAIRAGMQPGLTLVVGPPGTGKTDVA 209
P E G+ +V G +GKT +
Sbjct: 111 PVVAEFGGHRYASGMVIVTGKGNSGKTPLV 140
Score = 28.8 bits (64), Expect = 3.6
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 821 IEAIRAGMQPGLTLVVGPPGTGKTDVA 847
E G+ +V G +GKT +
Sbjct: 114 AEFGGHRYASGMVIVTGKGNSGKTPLV 140
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 28.9 bits (63), Expect = 1.9
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 194 LTLVVGPPGTGKTDVAVQIISNLYH 218
+ L +G PG+GK+ A + I+
Sbjct: 4 IILTIGCPGSGKSTWAREFIAKNPG 28
Score = 28.9 bits (63), Expect = 1.9
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 832 LTLVVGPPGTGKTDVAVQIISNLYH 856
+ L +G PG+GK+ A + I+
Sbjct: 4 IILTIGCPGSGKSTWAREFIAKNPG 28
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 29.2 bits (64), Expect = 1.9
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 196 LVVGPPGTGKTDVAVQIISNLYHNFPHQRTLI 227
+++G G+GK+ VA ++ L+ F L
Sbjct: 10 VLMGVSGSGKSAVASEVAHQLHAAFLDGDFLH 41
Score = 29.2 bits (64), Expect = 1.9
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 834 LVVGPPGTGKTDVAVQIISNLYHNFPHQRTLI 865
+++G G+GK+ VA ++ L+ F L
Sbjct: 10 VLMGVSGSGKSAVASEVAHQLHAAFLDGDFLH 41
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS
kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 29.3 bits (64), Expect = 2.1
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 182 QIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQ 223
Q+ R G + + G G GKT V++ + L +
Sbjct: 9 QVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPC 50
Score = 28.5 bits (62), Expect = 3.2
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 820 EIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQ 861
++ R G + + G G GKT V++ + L +
Sbjct: 9 QVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPC 50
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 29.5 bits (65), Expect = 2.3
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 195 TLVVGPPGTGKTDVAVQIISNLYHN 219
LV G GTGK+ + ++
Sbjct: 53 LLVNGATGTGKSVLLRELAYTGLLR 77
Score = 29.5 bits (65), Expect = 2.3
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 833 TLVVGPPGTGKTDVAVQIISNLYHN 857
LV G GTGK+ + ++
Sbjct: 53 LLVNGATGTGKSVLLRELAYTGLLR 77
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major
[TaxId: 5664]}
Length = 174
Score = 28.8 bits (63), Expect = 2.3
Identities = 19/107 (17%), Positives = 35/107 (32%), Gaps = 9/107 (8%)
Query: 196 LVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLDVDERHLLRL 255
L+ G PGTGKT +A I + L + +V ++ E + ++ L
Sbjct: 9 LITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHIIEEKDEDRLL 68
Query: 256 GHGEEALETEKDFSRYGRVNYVLAK---------RLDLLQEVERLQK 293
E + + + + + + ERL K
Sbjct: 69 DFMEPIMVSRGNHVVDYHSSELFPERWFHMVVVLHTSTEVLFERLTK 115
Score = 27.7 bits (60), Expect = 5.6
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 834 LVVGPPGTGKTDVAVQIISNLYHNFPH 860
L+ G PGTGKT +A ++I+ F H
Sbjct: 9 LITGTPGTGKTSMA-EMIAAELDGFQH 34
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia
coli [TaxId: 562]}
Length = 179
Score = 28.7 bits (63), Expect = 2.5
Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
Query: 834 LVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLDVDERHLLH 892
+++G P GK A I+ P T + + K +D L+
Sbjct: 4 ILLGAPVAGKGTQAQFIMEKY--GIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT 60
Score = 28.4 bits (62), Expect = 3.3
Identities = 11/57 (19%), Positives = 18/57 (31%), Gaps = 2/57 (3%)
Query: 196 LVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLDVDERHL 252
+++G P GK A I+ P T + + K +D L
Sbjct: 4 ILLGAPVAGKGTQAQFIMEKY--GIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKL 58
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 28.8 bits (63), Expect = 2.5
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 192 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSN 232
P L ++VG P GKT ++ ++ L NF T
Sbjct: 2 PTLIVMVGLPARGKTYISKKLTRYL--NFIGVPTREFNVGQ 40
Score = 28.8 bits (63), Expect = 2.5
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 830 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSN 870
P L ++VG P GKT ++ ++ L NF T
Sbjct: 2 PTLIVMVGLPARGKTYISKKLTRYL--NFIGVPTREFNVGQ 40
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 28.8 bits (63), Expect = 2.6
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 191 QPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRT 225
+P + V+G PG+GK I+ + + H
Sbjct: 5 KPNVVFVLGGPGSGKGTQCANIVRDF--GWVHLSA 37
Score = 28.8 bits (63), Expect = 2.6
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 829 QPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRT 863
+P + V+G PG+GK I+ + + H
Sbjct: 5 KPNVVFVLGGPGSGKGTQCANIVRDF--GWVHLSA 37
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III,
N-domain {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 28.9 bits (64), Expect = 2.7
Identities = 4/26 (15%), Positives = 12/26 (46%)
Query: 196 LVVGPPGTGKTDVAVQIISNLYHNFP 221
L+ G + +V++++ + P
Sbjct: 19 LINGEDLSYPREVSLELPEYVEKFPP 44
Score = 28.9 bits (64), Expect = 2.7
Identities = 4/26 (15%), Positives = 12/26 (46%)
Query: 834 LVVGPPGTGKTDVAVQIISNLYHNFP 859
L+ G + +V++++ + P
Sbjct: 19 LINGEDLSYPREVSLELPEYVEKFPP 44
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 28.8 bits (63), Expect = 2.9
Identities = 25/90 (27%), Positives = 33/90 (36%), Gaps = 4/90 (4%)
Query: 183 IEAIRAGMQ-PGLTLVVGPPGTGKTDVAVQIISNLYHNFPH---QRTLIVTHSNQALNQL 238
+EA +A + L+ GPPG GKT +A I L N L
Sbjct: 25 LEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANS 84
Query: 239 FEKIISLDVDERHLLRLGHGEEALETEKDF 268
E+ L +DE H L E +DF
Sbjct: 85 LEEGDILFIDEIHRLSRQAEEHLYPAMEDF 114
Score = 28.8 bits (63), Expect = 3.1
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 821 IEAIRAGMQ-PGLTLVVGPPGTGKTDVAVQIISNLYHNF 858
+EA +A + L+ GPPG GKT +A I L N
Sbjct: 25 LEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL 63
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 28.4 bits (62), Expect = 3.3
Identities = 14/87 (16%), Positives = 32/87 (36%), Gaps = 6/87 (6%)
Query: 194 LTLVVGPPGTGKTDVAVQIISNL---YHNFPHQR---TLIVTHSNQALNQLFEKIISLDV 247
+ +V G PG GK+ V ++ L N ++ T + +++ L V
Sbjct: 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSV 62
Query: 248 DERHLLRLGHGEEALETEKDFSRYGRV 274
+++ L++ + E +
Sbjct: 63 EKQKKLQIDAAKGIAEEARAGGEGYLF 89
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho,
ATPase domain {Escherichia coli [TaxId: 562]}
Length = 289
Score = 28.8 bits (64), Expect = 3.4
Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 789 DHLRSSFPQAEIRVKTDNPTKLVPPFKLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAV 848
++L + +R++ N + LT ++ + L+V PP GKT +
Sbjct: 6 ENLTPLHANSRLRMERGNGS----TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQ 61
Query: 849 QIISNLYHNFP 859
I ++ +N P
Sbjct: 62 NIAQSIAYNHP 72
Score = 28.8 bits (64), Expect = 3.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 196 LVVGPPGTGKTDVAVQIISNLYHNFP 221
L+V PP GKT + I ++ +N P
Sbjct: 47 LIVAPPKAGKTMLLQNIAQSIAYNHP 72
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 28.3 bits (62), Expect = 3.6
Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 2/64 (3%)
Query: 834 LVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLDVDERHLLHK 893
L++GPPG GK AV++ L P T + N +D L+
Sbjct: 4 LLLGPPGAGKGTQAVKLAEKL--GIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPS 61
Query: 894 KYRI 897
Sbjct: 62 DLTN 65
Score = 27.6 bits (60), Expect = 5.7
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 196 LVVGPPGTGKTDVAVQIISNLYHNFPH 222
L++GPPG GK AV++ L P
Sbjct: 4 LLLGPPGAGKGTQAVKLAEKL--GIPQ 28
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 28.9 bits (64), Expect = 3.8
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 196 LVVGPPGTGKTDVAVQIISNLYHNF 220
L GP +GKT +A ++
Sbjct: 158 LFKGPIDSGKTTLAAALLELCGGKA 182
Score = 28.9 bits (64), Expect = 3.8
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 834 LVVGPPGTGKTDVAVQIISNLYHNF 858
L GP +GKT +A ++
Sbjct: 158 LFKGPIDSGKTTLAAALLELCGGKA 182
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 28.4 bits (62), Expect = 4.1
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 196 LVVGPPGTGKTDVAVQIISNLYHNFPHQ 223
L+ GPP +GKT +A +I F
Sbjct: 44 LLEGPPHSGKTALAAKIAEESNFPFIKI 71
Score = 28.4 bits (62), Expect = 4.1
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 834 LVVGPPGTGKTDVAVQIISNLYHNFPHQ 861
L+ GPP +GKT +A +I F
Sbjct: 44 LLEGPPHSGKTALAAKIAEESNFPFIKI 71
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 28.0 bits (61), Expect = 4.1
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 196 LVVGPPGTGKTDVAVQIISNLYHNFPH 222
+++GPPG GK A + + H
Sbjct: 6 VLIGPPGAGKGTQAPNLQERF--HAAH 30
Score = 28.0 bits (61), Expect = 4.1
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 834 LVVGPPGTGKTDVAVQIISNLYHNFPH 860
+++GPPG GK A + + H
Sbjct: 6 VLIGPPGAGKGTQAPNLQERF--HAAH 30
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 28.3 bits (62), Expect = 4.3
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 196 LVVGPPGTGKTDVAVQIISNLYHNFPH 222
++G PG+GK V+ +I + H
Sbjct: 10 AIMGAPGSGKGTVSSRITKHF--ELKH 34
Score = 28.3 bits (62), Expect = 4.3
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 834 LVVGPPGTGKTDVAVQIISNLYHNFPH 860
++G PG+GK V+ +I + H
Sbjct: 10 AIMGAPGSGKGTVSSRITKHF--ELKH 34
>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain
{Deinococcus radiodurans [TaxId: 1299]}
Length = 268
Score = 28.3 bits (63), Expect = 4.4
Identities = 22/92 (23%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 190 MQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQR---TLIVTHSNQALNQLFEKIISLD 246
+ +T + GP GKT +A+ I++ Q+ T + AL+ ++ + + ++
Sbjct: 55 PRGRITEIYGPESGGKTTLALAIVAQA------QKAGGTCAFIDAEHALDPVYARALGVN 108
Query: 247 VDERHLLRLGHGEEALETEKDFSRYGRVNYVL 278
DE + + +GE+ALE + R G ++ V+
Sbjct: 109 TDELLVSQPDNGEQALEIMELLVRSGAIDVVV 140
>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma
(Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}
Length = 78
Score = 26.3 bits (58), Expect = 4.5
Identities = 8/45 (17%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 875 QLFEKIISLDVDERHLLHKKYRITPRYLLLAIKNDVELSQLLSDV 919
Q+F ++L +K+ + + +AI + L D+
Sbjct: 32 QIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQF-DFLIDI 75
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 194
Score = 28.0 bits (61), Expect = 4.6
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 196 LVVGPPGTGKTDVAVQIISNLYHNFPH 222
V+G PG GK +I+ + H
Sbjct: 5 FVLGGPGAGKGTQCARIVEKY--GYTH 29
Score = 28.0 bits (61), Expect = 4.6
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 834 LVVGPPGTGKTDVAVQIISNLYHNFPH 860
V+G PG GK +I+ + H
Sbjct: 5 FVLGGPGAGKGTQCARIVEKY--GYTH 29
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
{Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 28.4 bits (62), Expect = 4.8
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 820 EIEAIRAGMQPGLTLVVGPPGTGKT 844
+ A+ G+ G LV G GTGK+
Sbjct: 20 LLTAVDPGI--GGVLVFGDRGTGKS 42
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 28.3 bits (61), Expect = 4.9
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 192 PGLTLVVGPPGTGKT 206
G+ L++G G+GK+
Sbjct: 23 EGINLIIGQNGSGKS 37
Score = 28.3 bits (61), Expect = 4.9
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 830 PGLTLVVGPPGTGKT 844
G+ L++G G+GK+
Sbjct: 23 EGINLIIGQNGSGKS 37
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 28.1 bits (61), Expect = 5.0
Identities = 24/180 (13%), Positives = 46/180 (25%), Gaps = 12/180 (6%)
Query: 196 LVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLDVDERHLLRL 255
L GPPGTGKT + + LY + LN E+ IS+ ++
Sbjct: 37 LFYGPPGTGKTSTILALTKELYGPDLMK------SRILELNASDERGISIVREKVKNFAR 90
Query: 256 GHGEEALETEKDFSRYGRVNYVLAKRLDLLQEVERLQKSLDVSGDVAYTCETAGHFFLYQ 315
+ + + + ++ +L E + + + + F
Sbjct: 91 LTVSKPSKHDLENYPCP------PYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLI 144
Query: 316 VLARWEKFLATVRPSDGKTVPVKTIKTEFPFHGFFENAPKPLFKEKSYETDMEIAEGCFR 375
F + E ++I+ G R
Sbjct: 145 CNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLR 204
Score = 27.8 bits (60), Expect = 6.6
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 834 LVVGPPGTGKTDVAVQIISNLYHNFPHQ 861
L GPPGTGKT + + LY +
Sbjct: 37 LFYGPPGTGKTSTILALTKELYGPDLMK 64
>d1vkya_ e.53.1.1 (A:) Queuosine biosynthesis protein queA
{Thermotoga maritima [TaxId: 2336]}
Length = 332
Score = 28.5 bits (63), Expect = 5.1
Identities = 13/115 (11%), Positives = 32/115 (27%), Gaps = 2/115 (1%)
Query: 446 DLCSQISRHEKRSSQLEALNSMPLYPTQEIIWNENIVPTEYFSGEGCLALPKLNLQF--L 503
D + + + PL P + T Y EG +A P L F
Sbjct: 120 DGTRILKFQPQDDRLIFEKGRTPLPPYIKNEVPLERYQTVYAKEEGSVAAPTAGLHFTPE 179
Query: 504 TLHDYLLRNFNLFRLESTCRVNYVLAKRLDLLQEVERLQKSLDVSGDVAYTCETA 558
+ + + + +++ +++ + ++ V +
Sbjct: 180 LIEKLKKKGVQFAEVVLHVGIGTFRPVKVEEVEKHKMHEEFYQVPKETVRKLRET 234
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 27.5 bits (60), Expect = 5.5
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 197 VVGPPGTGKTDVAVQIISNL 216
VVG +GKT + + ++
Sbjct: 6 VVGYKHSGKTTLMEKWVAAA 25
Score = 27.5 bits (60), Expect = 5.5
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 835 VVGPPGTGKTDVAVQIISNL 854
VVG +GKT + + ++
Sbjct: 6 VVGYKHSGKTTLMEKWVAAA 25
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 27.8 bits (61), Expect = 5.6
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 191 QPGLTLVVGPPGTGKT 206
+ + LVVG G GKT
Sbjct: 5 KGRVVLVVGVNGVGKT 20
Score = 27.8 bits (61), Expect = 5.6
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 829 QPGLTLVVGPPGTGKT 844
+ + LVVG G GKT
Sbjct: 5 KGRVVLVVGVNGVGKT 20
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 28.2 bits (62), Expect = 5.6
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 184 EAIRAGMQPGLTLVVGPPGTGKTDVAVQI 212
E +R + P L++GP G GKT++A ++
Sbjct: 41 EPLRHEVTPKNILMIGPTGVGKTEIARRL 69
Score = 28.2 bits (62), Expect = 5.6
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 822 EAIRAGMQPGLTLVVGPPGTGKTDVAVQI 850
E +R + P L++GP G GKT++A ++
Sbjct: 41 EPLRHEVTPKNILMIGPTGVGKTEIARRL 69
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 27.6 bits (60), Expect = 5.6
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 196 LVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLDVDERHLLRL 255
L+ G PG GKT + ++ S + + Q + E+ +DE ++
Sbjct: 8 LLTGTPGVGKTTLGKELASKS--GLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDE 65
Query: 256 GH 257
Sbjct: 66 LD 67
Score = 27.6 bits (60), Expect = 6.1
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 834 LVVGPPGTGKTDVAVQIISNLYHNF 858
L+ G PG GKT + ++ S +
Sbjct: 8 LLTGTPGVGKTTLGKELASKSGLKY 32
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 27.5 bits (60), Expect = 5.8
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 196 LVVGPPGTGKTDVAVQIISNLYHNFPH 222
+++G PG GK A I Y PH
Sbjct: 4 VLMGLPGAGKGTQA-DRIVEKY-GTPH 28
Score = 27.5 bits (60), Expect = 5.8
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 834 LVVGPPGTGKTDVAVQIISNLYHNFPH 860
+++G PG GK A I Y PH
Sbjct: 4 VLMGLPGAGKGTQA-DRIVEKY-GTPH 28
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 28.1 bits (61), Expect = 6.0
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 191 QPGLTLVVGPPGTGKT 206
+ T ++GP G+GK+
Sbjct: 24 ESNFTSIIGPNGSGKS 39
Score = 28.1 bits (61), Expect = 6.0
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 829 QPGLTLVVGPPGTGKT 844
+ T ++GP G+GK+
Sbjct: 24 ESNFTSIIGPNGSGKS 39
>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 269
Score = 28.0 bits (62), Expect = 6.0
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
Query: 185 AIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIIS 244
I + + + GP +GKT VA+ ++N + AL+ + K +
Sbjct: 53 GIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAA---GGVAAFIDAEHALDPDYAKKLG 109
Query: 245 LDVDERHLLRLGHGEEALETEKDFSRYGRVNYVL 278
+D D + + GE+ALE R G ++ V+
Sbjct: 110 VDTDSLLVSQPDTGEQALEIADMLIRSGALDIVV 143
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco
(Nicotiana tabacum) [TaxId: 4097]}
Length = 147
Score = 27.4 bits (60), Expect = 6.1
Identities = 7/38 (18%), Positives = 11/38 (28%)
Query: 412 AMTCTHAALKRKELVDMGFSFSISPIWVSFNTVSDLCS 449
A + + + F S SP V +L
Sbjct: 100 AEDGMVGSSGDAQECEEYFKGSKSPFSALNIAVHELSD 137
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 27.9 bits (62), Expect = 6.6
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 192 PGLTLVVGPPGTGKTDVAVQIISNLYHNF-----PHQRTLIVTHSNQALNQLFEK 241
P L+VGPPGTGKT +A I F + V + +FE+
Sbjct: 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQ 99
Score = 27.9 bits (62), Expect = 6.6
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 830 PGLTLVVGPPGTGKTDVAVQIISNLYHNF-----PHQRTLIVTHSNQALNQLFEK 879
P L+VGPPGTGKT +A I F + V + +FE+
Sbjct: 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQ 99
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 27.5 bits (60), Expect = 6.6
Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 834 LVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLDVDERHLLHK 893
++ G P +GK ++I Y H + + A K +++ L+
Sbjct: 7 MISGAPASGKGTQC-ELIKTKY-QLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPD 64
Query: 894 KYRI 897
+ +
Sbjct: 65 EIVV 68
Score = 27.5 bits (60), Expect = 7.0
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 196 LVVGPPGTGKTDVAVQIISNLYHNFPH 222
++ G P +GK ++I Y H
Sbjct: 7 MISGAPASGKGTQC-ELIKTKY-QLAH 31
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis
elegans [TaxId: 6239]}
Length = 277
Score = 27.9 bits (61), Expect = 7.0
Identities = 25/202 (12%), Positives = 55/202 (27%), Gaps = 24/202 (11%)
Query: 169 NEPRKNTIPFTPTQIEAIR------AGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPH 222
N P++ T ++ + + + G G+GK+ +A Q +S
Sbjct: 15 NVPKQMTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGI 74
Query: 223 QRTLIVTHSNQALNQLFEKIISLDVDERHLLRLGHGEEALETEKDFSRYGRVNYVLAKRL 282
IV + + D+ LL L ++ L + +
Sbjct: 75 NYDSIVWLKDSG----TAPKSTFDLFTDILLMLKSEDDLLNFPSV-----EHVTSVVLKR 125
Query: 283 DLLQEVERLQKSLDVSGDVA---YTCETAGHFFLYQVLARWEKFLATVRPSDGKTVPVKT 339
+ + +L V DV V R + + + V +
Sbjct: 126 MICNALIDRPNTLFVFDDVVQEETIRWAQELRLRCLVTTRDVEISNAAS-QTCEFIEVTS 184
Query: 340 IKTE-----FPFHGFFENAPKP 356
++ + +G +
Sbjct: 185 LEIDECYDFLEAYGMPMPVGEK 206
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 27.2 bits (59), Expect = 7.5
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 196 LVVGPPGTGKTDVAVQIISNLYHNFPH 222
+++GPPG GK A ++ N H
Sbjct: 7 VLLGPPGAGKGTQAPKLAKNF--CVCH 31
Score = 27.2 bits (59), Expect = 7.5
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 834 LVVGPPGTGKTDVAVQIISNLYHNFPH 860
+++GPPG GK A ++ N H
Sbjct: 7 VLLGPPGAGKGTQAPKLAKNF--CVCH 31
>d1bifa2 c.60.1.4 (A:250-468)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
phosphatase domain {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 219
Score = 27.5 bits (60), Expect = 7.8
Identities = 15/154 (9%), Positives = 38/154 (24%), Gaps = 11/154 (7%)
Query: 109 LTTTPPRQAIIIGFLLIQVLKKRTEEEENEDEDVEMENKDGKPIITVEPHVIPSRGPYLF 168
L+ + + Q + + ++ ++V
Sbjct: 24 LSPRGREFSKHLA----QFISDQNIKDLKVFTSQMKRTIQTAEALSVPYEQFKVLNEIDA 79
Query: 169 NEPRKNTIPFTPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIV 228
+ T A P G D+ ++ + + L++
Sbjct: 80 GVCEEMTYEEIQDHYPLEFALRDQDKYRYRYPKGESYEDLVQRLEPVIMELERQENVLVI 139
Query: 229 THSN-------QALNQLFEKIISLDVDERHLLRL 255
H L++ E++ L +L+L
Sbjct: 140 CHQAVMRCLLAYFLDKAAEELPYLKCPLHTVLKL 173
Score = 27.2 bits (59), Expect = 8.9
Identities = 18/135 (13%), Positives = 40/135 (29%), Gaps = 11/135 (8%)
Query: 773 PNEIATMDFNDTFLNMDHLRSSFPQAEIRVKTDNPTKLVPPFKLTFHEIEAIRAGMQPGL 832
++ T T + L + Q ++ + D ++ A
Sbjct: 46 DLKVFTSQMKRTIQTAEALSVPYEQFKVLNEIDAGVCEEMTYEEIQDHYPLEFALRDQDK 105
Query: 833 TLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSN-------QALNQLFEKIISLDV 885
P G D+ ++ + + L++ H L++ E++ L
Sbjct: 106 YRYRYPKGESYEDLVQRLEPVIMELERQENVLVICHQAVMRCLLAYFLDKAAEELPYLKC 165
Query: 886 DERHLLHKKYRITPR 900
LH ++TP
Sbjct: 166 P----LHTVLKLTPV 176
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 27.0 bits (58), Expect = 8.0
Identities = 20/159 (12%), Positives = 40/159 (25%), Gaps = 15/159 (9%)
Query: 834 LVVGPPGTGKTDVAVQIISNLY-----HNFPHQRTLIVTHSNQALNQLFEKIISLDVDER 888
+VVG GK+ + + ++ N +L + +
Sbjct: 6 VVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFD 65
Query: 889 HLLHKKYRITPRYLLLAIKNDVELSQLLSDVTIAQGGVMPNIQSMKFDKTLKTLLSPWKS 948
+ YR +L+ D E + +S + +I +
Sbjct: 66 AITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQN-------KIDL 118
Query: 949 EDGSPFFGGWARMAQPIVNFAVVEV-AKP--NIEEALET 984
D S A + K N+ E +
Sbjct: 119 LDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKY 157
>d1eiwa_ c.23.3.1 (A:) Hypothetical protein MTH538 {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 111
Score = 26.4 bits (58), Expect = 8.1
Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 17/75 (22%)
Query: 84 VLKKRTEEEENEDEDVEMENKDANVLTTTPPRQAIIIGFLLIQVLKKRTEEEENEDEDVE 143
V +R E+ E E+ DA + ++ G + V+
Sbjct: 19 VFLERLEQSGLEWRPATPEDADAVI---------VLAG--------LWGTRRDEILGAVD 61
Query: 144 MENKDGKPIITVEPH 158
+ K KPIITV P+
Sbjct: 62 LARKSSKPIITVRPY 76
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain
{Human papillomavirus type 18 [TaxId: 333761]}
Length = 205
Score = 27.5 bits (61), Expect = 8.2
Identities = 16/99 (16%), Positives = 32/99 (32%), Gaps = 34/99 (34%)
Query: 126 QVLKKRTEEEENEDEDVEMENKDGKPIIT------VEP-HVIPSRGPYLFNEPRKNTIPF 178
Q ++ R + + D +PI+ +E + + +L P+KN +
Sbjct: 7 QWIRFRCSKIDEG--------GDWRPIVQFLRYQQIEFITFLGALKSFLKGTPKKNCL-- 56
Query: 179 TPTQIEAIRAGMQPGLTLVVGPPGTGKTDVAVQIISNLY 217
+ GP TGK+ + I +
Sbjct: 57 -----------------VFCGPANTGKSYFGMSFIHFIQ 78
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli
[TaxId: 562]}
Length = 222
Score = 27.3 bits (59), Expect = 8.2
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 818 FHEIEAIRAGMQPGLTLVVGPPGTGKT 844
++ A + +T + G G GK+
Sbjct: 12 WNGFFARTFDLDELVTTLSGGNGAGKS 38
>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal
domain {Clostridium acetobutylicum [TaxId: 1488]}
Length = 141
Score = 27.0 bits (59), Expect = 8.4
Identities = 7/38 (18%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 194 LTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHS 231
+ ++VGP +GK++ ++ I Q+ +
Sbjct: 9 VEVIVGPMYSGKSEELIRRIRRAKIA--KQKIQVFKPE 44
Score = 27.0 bits (59), Expect = 8.4
Identities = 7/38 (18%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 832 LTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHS 869
+ ++VGP +GK++ ++ I Q+ +
Sbjct: 9 VEVIVGPMYSGKSEELIRRIRRAKIA--KQKIQVFKPE 44
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 27.5 bits (60), Expect = 8.5
Identities = 9/38 (23%), Positives = 20/38 (52%)
Query: 191 QPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIV 228
P GP G+GK+ ++QI ++L + ++++
Sbjct: 26 CPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGY 63
Score = 27.5 bits (60), Expect = 8.5
Identities = 9/38 (23%), Positives = 20/38 (52%)
Query: 829 QPGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIV 866
P GP G+GK+ ++QI ++L + ++++
Sbjct: 26 CPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGY 63
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 27.3 bits (59), Expect = 8.6
Identities = 13/112 (11%), Positives = 39/112 (34%), Gaps = 4/112 (3%)
Query: 196 LVVGPPGTGKTDVAVQIISNLYHNFPHQRT-LIVTHSNQALNQLFEKIISLDVDERHLLR 254
V+G PG GK +++ + +F H ++ + ++I + E ++
Sbjct: 12 FVLGGPGAGKGTQCEKLVKDY--SFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVP 69
Query: 255 LGHGEEALETEK-DFSRYGRVNYVLAKRLDLLQEVERLQKSLDVSGDVAYTC 305
L D + + +++ + + ++ + S + +
Sbjct: 70 QEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFD 121
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 27.0 bits (59), Expect = 8.9
Identities = 19/115 (16%), Positives = 41/115 (35%), Gaps = 7/115 (6%)
Query: 830 PGLTLVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIV--THSNQALNQLFEKIISLDVDE 887
P + ++VG GTGK A + ++ Y + L+ + AL QL + + V
Sbjct: 12 PYVIMLVGVQGTGKATTAGK-LAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPV 70
Query: 888 RHLLHKKYRITPRYLLLAIKNDVELSQLLSDVTIAQGGVMPNIQSMKFDKTLKTL 942
+K + + ++ ++ D G + + +K +
Sbjct: 71 YGEPGEKDVVGIAKRGVEKFLSEKMEIIIVDT----AGRHGYGEEAALLEEMKNI 121
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 27.2 bits (59), Expect = 9.1
Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 2/73 (2%)
Query: 196 LVVGPPGTGKTDVAVQIISNLYHNFPHQRTLIVTHSNQALNQLFEKIISLDVDERHLLRL 255
+V G PG G T + + NL +V+ + E+ + D D+ +
Sbjct: 5 VVTGVPGVGSTTSSQLAMDNL--RKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDP 62
Query: 256 GHGEEALETEKDF 268
+ +
Sbjct: 63 ETQKRIQKMAGRK 75
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 27.2 bits (60), Expect = 9.2
Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 4/68 (5%)
Query: 812 PPFKLTFHEIEAIRAGMQPGLTLVVGPPGTGKTDVAVQI--ISNLYHNFPHQRTLIVTHS 869
P K +I+ I P L+ G G GK VA I +S+ +
Sbjct: 7 PKMKEILEKIKKISCAECP--VLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPR 64
Query: 870 NQALNQLF 877
+ +LF
Sbjct: 65 DIFEAELF 72
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 27.2 bits (59), Expect = 9.5
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 196 LVVGPPGTGKTDVAVQIISNLYHNFPH 222
VVG PG+GK +I+ + H
Sbjct: 12 FVVGGPGSGKGTQCEKIVQKY--GYTH 36
Score = 27.2 bits (59), Expect = 9.5
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 834 LVVGPPGTGKTDVAVQIISNLYHNFPH 860
VVG PG+GK +I+ + H
Sbjct: 12 FVVGGPGSGKGTQCEKIVQKY--GYTH 36
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.402
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,963,749
Number of extensions: 194764
Number of successful extensions: 1036
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1033
Number of HSP's successfully gapped: 191
Length of query: 1051
Length of database: 2,407,596
Length adjustment: 95
Effective length of query: 956
Effective length of database: 1,103,246
Effective search space: 1054703176
Effective search space used: 1054703176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)